Query 000338
Match_columns 1639
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1883 Cofactor required for 100.0 1E-275 3E-280 2411.0 43.1 1400 1-1635 1-1511(1517)
2 PF11573 Med23: Mediator compl 100.0 3E-217 7E-222 1995.4 64.1 987 459-1581 276-1341(1341)
3 KOG1883 Cofactor required for 100.0 3.3E-68 7.1E-73 637.0 32.6 946 464-1618 296-1378(1517)
4 PF07719 TPR_2: Tetratricopept 30.6 41 0.00089 25.8 2.2 18 457-474 16-33 (34)
5 PF04782 DUF632: Protein of un 28.3 30 0.00066 41.3 1.6 52 329-384 244-310 (312)
6 PF00515 TPR_1: Tetratricopept 23.7 68 0.0015 25.0 2.3 18 457-474 16-33 (34)
7 PF09759 Atx10homo_assoc: Spin 22.6 65 0.0014 33.2 2.5 41 116-159 17-61 (102)
8 smart00028 TPR Tetratricopepti 20.6 92 0.002 21.3 2.3 18 457-474 16-33 (34)
9 COG1168 MalY Bifunctional PLP- 19.9 28 0.0006 42.7 -0.8 33 102-144 139-171 (388)
10 PF06371 Drf_GBD: Diaphanous G 18.0 1.7E+02 0.0036 31.0 4.5 91 356-482 12-104 (187)
No 1
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=1.5e-275 Score=2411.02 Aligned_cols=1400 Identities=23% Similarity=0.241 Sum_probs=1291.3
Q ss_pred CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCccCCCCchhhhHhhhccccccCcchhhHH
Q 000338 1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVE 80 (1639)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1639)
|||++ | .+.++.. +||.++|||+|++++|+|+||+|+.+|+|++.++|+++
T Consensus 1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~----------------------- 51 (1517)
T KOG1883|consen 1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIG----------------------- 51 (1517)
T ss_pred CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCC-----------------------
Confidence 45554 7 6667777 88999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHhhccCCCCCCcchhhhhHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhccc
Q 000338 81 EFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGY 160 (1639)
Q Consensus 81 ~~~~~~~~~krv~a~~~~~~p~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~ 160 (1639)
||||+||++-|+++||+||||++||+-++.+|.+.+|.|.++|++|+++|.||++||||++|++| .||++||
T Consensus 52 -----d~t~~r~~~~n~~~qe~~eQ~ll~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~l 123 (1517)
T KOG1883|consen 52 -----DETALRIQFGNMMMQEKEEQSLLKELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGL 123 (1517)
T ss_pred -----chhhHHHhcCCCCCCchhHHHHHHHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred ccccccHHHHhhhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccccc
Q 000338 161 INWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETS 240 (1639)
Q Consensus 161 ~~wd~~l~~ll~~~~~~e~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~ 240 (1639)
|+ ++|+++.|+++.+|.+..|++++.....+ ...++|. -|.|+||+ +|..+..|+-
T Consensus 124 i~--t~l~~l~s~i~ae~~kli~~vi~~vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V 179 (1517)
T KOG1883|consen 124 IM--TSLFRLCSRIWAEKFKLINDVIPKVDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQV 179 (1517)
T ss_pred hh--cchHHHHHHHHHHHHHHHhhhhhhhchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHH
Confidence 99 99999999999999999999998544433 2233432 46788888 7776554432
Q ss_pred ccccccccccCCCcCCCC---cccccccccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccC
Q 000338 241 VCAAMSPVKSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG 317 (1639)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~~l~c~i~l~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g 317 (1639)
- .|-.+|+ ....|++...+. ++.|++|+.|.+. ||++|++++++|.+|+|+| ++..|
T Consensus 180 ~----------Qi~~a~~vir~i~dRns~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~ 239 (1517)
T KOG1883|consen 180 N----------QILAAENVIRHIVDRNSCLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTAD 239 (1517)
T ss_pred H----------HHHHHHHHHHHHHhccccccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-ccccc
Confidence 1 3444555 556788877776 8999999999998 9999999999999999999 88889
Q ss_pred CCccCCccccchhHHHHHHHHHHHHHHHHhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhh
Q 000338 318 IDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQML 397 (1639)
Q Consensus 318 ~~~~~~~~~~~~~~~~~w~~~cl~viw~lv~e~~~rvpfy~ll~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~l 397 (1639)
+++.=+++|++++.+++| .+|||++|.|+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.
T Consensus 240 ~~~i~Gr~~~~pi~l~~~-~~~l~~~W~l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~ 317 (1517)
T KOG1883|consen 240 LSSICGRGSVLPIVLHPG-FYPLTNSWELDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHK 317 (1517)
T ss_pred chhhcccccccccccccC-cccchhhheecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCc
Confidence 988889999999999999 99999999998888 9999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccccccCcccccccccccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhh
Q 000338 398 DQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDW 477 (1639)
Q Consensus 398 dqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~ 477 (1639)
|||+|||||++|||.++.+.++-.||+.++|.|||+ +|.||+++++|.+|+| ++++|+||++|++|
T Consensus 318 ~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~---- 383 (1517)
T KOG1883|consen 318 PQKQRCPTLEEQLISLMICAMEMAEAESLPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH---- 383 (1517)
T ss_pred hhhhcCCcHHHHhHHHhhhccccccccccccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH----
Confidence 999999999999999999999999999999999999 9999999999999999 99999999999998
Q ss_pred hhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHH
Q 000338 478 WKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLV 542 (1639)
Q Consensus 478 w~~vl~~ap~~~~~~~-~~~~~~~f~~~mi~ea~i~r~~~ll~~~~--------------~~~~~w~eWl~fsd~f~fl~ 542 (1639)
++|+++||||...| ++.+|+||+++|+|+|.+||++|++|++| +.-+||++|+.|+|+|+||+
T Consensus 384 --~~L~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~ 461 (1517)
T KOG1883|consen 384 --NKLKRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLE 461 (1517)
T ss_pred --HHHhhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhh
Confidence 99999999999999 99999999999999999999999999832 22389999999999999999
Q ss_pred hcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCCCCCCCcchh
Q 000338 543 KSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSIL 622 (1639)
Q Consensus 543 ~~~~~df~~fi~kL~~r~~~gd~~~~~~nhv~wllaqii~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~d~n~pqs~~ 622 (1639)
|.||.||.|++++| +|++|+ |+ |+|+|++|.+++| +|..|++++++|+ |++|+..|+++|++.|
T Consensus 462 Kka~~Df~d~~~pl--------nh~Lr~-H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~L 525 (1517)
T KOG1883|consen 462 KKACTDFADKMPPL--------NHTLRS-HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQL 525 (1517)
T ss_pred hhhccchhhccCcc--------cHHHHH-HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHH
Confidence 99999999999999 889998 88 9999999999999 7899999999999 9999999999999999
Q ss_pred hhhhccccceEEEeeccchHHhhcHHHhhhhhhHHHHHHHhhcccccccccccCccceeeeeeehhcccchhhhHHHHhh
Q 000338 623 LDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWL 702 (1639)
Q Consensus 623 ~df~~s~q~l~iw~~n~~~~~~L~~~~~q~~k~~~eWw~~~~kg~~~~d~~n~DD~~iamL~vlssT~a~P~~Dtvm~~l 702 (1639)
||+++||||+|||.+.+++|++++++++-+++ +|+||... ||||+++||+.++++|++..++|||.|+...+|.
T Consensus 526 Le~i~~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~ 599 (1517)
T KOG1883|consen 526 LESISSNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACE 599 (1517)
T ss_pred HHHHhcCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccc
Confidence 99999999999999999999999999999999 99999966 8999999999999999999999999998899999
Q ss_pred ccCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhhcCCccCChhHHHHHHHhhhcccc-hh
Q 000338 703 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SL 781 (1639)
Q Consensus 703 ~~~~v~e~ipG~~~~pn~~i~a~~~~~PLpmsLLDsLTvh~KmsLi~qI~~~lf~~~~vPSPAlVETYsRLLvyte~-sL 781 (1639)
++++..+ .+ .+|||+|+++|+|+ ++
T Consensus 600 s~~~~~~-~~-----------------------------------------------------~le~~arllv~~ei~sl 625 (1517)
T KOG1883|consen 600 SEDYEMA-VA-----------------------------------------------------LLETYARLLVYVEIESL 625 (1517)
T ss_pred cchhhhh-hc-----------------------------------------------------ccchhhhhheeeeeecc
Confidence 7776665 33 45666666666666 45
Q ss_pred hHhh------------hhhhhhcCchhhh--hcchhhHHHHHhhccc---cccccccCcchhHHHHHHHHHHhhccccch
Q 000338 782 FRSL------------FSHLAQRNPSLLA--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGD 844 (1639)
Q Consensus 782 ~~k~------------f~~LsQ~~psv~k--a~giL~~LLEilSYRL---~p~YRyqlks~~llhsL~~ii~~~~nq~q~ 844 (1639)
++|+ | ++|.+|+|++ +|+.+|+++|++|||+ +++||+|+.+. +|.+..+ ++.|++|.
T Consensus 626 ~isg~~~~~~~~~~~~F--lsqllptv~~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~ 699 (1517)
T KOG1883|consen 626 GISGEHQNVQAKDQCYF--LSQLLPTVFKHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGL 699 (1517)
T ss_pred ccCchhhhhhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhh
Confidence 5555 6 8999999999 9999999999999999 89999999996 9988777 89999999
Q ss_pred hHHHHHHHHHHHHHHHhhcc---------ccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 000338 845 HRVLRLAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI 915 (1639)
Q Consensus 845 H~llr~lEs~~LRLIlsL~s---------f~~vq~~~~~ps~~SEELNR~LILTLARsiKitGiad~~~g~~~k~~L~~I 915 (1639)
|. |+|++++|+|+++|+ ||..|.||++|++|||||||++|+||||++||||++|.++|+|||+||++|
T Consensus 700 h~---ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tI 776 (1517)
T KOG1883|consen 700 HL---CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTI 776 (1517)
T ss_pred hh---hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHH
Confidence 98 999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCchhhhccCc-HHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhhhhcccCCCCCcchHH
Q 000338 916 MATSQHTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCA 994 (1639)
Q Consensus 916 m~ntph~WpekTLr~FP-~~Lre~f~~~~D~~~l~~q~~qql~ttV~ee~rq~~Sms~E~~~V~~yi~hf~p~~~~fLC~ 994 (1639)
+++|||+||+||++||| ..|.++|.+| |.++++|||++|+|+||||+|+||+|||+||..|+.|. .||+|||+
T Consensus 777 i~~t~h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCl 850 (1517)
T KOG1883|consen 777 INTTPHGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCL 850 (1517)
T ss_pred HhcCCCCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHH
Confidence 99999999999999999 6777777766 89999999999999999999999999995555555553 46999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhccccCCchhHHHHHHHhHhhhhhhhccccchhh
Q 000338 995 GAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDI 1074 (1639)
Q Consensus 995 l~~ml~e~~~e~I~~~~lyrVLe~isprevta~ir~fvDyLv~e~~~elq~g~~~Q~lv~kcv~~LndmIWkynIVpLDR 1074 (1639)
++...|.+++||||+++ |||||++||||+++|+||||||||++++ .++++|++++||+++||+||||||++|+||
T Consensus 851 l~~~~m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~----t~~~~e~~l~k~~~~la~mvwkf~vl~lDr 925 (1517)
T KOG1883|consen 851 LFAYKMVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK----TSDCGEKTLKKCAKALALMVWKFNVLTLDR 925 (1517)
T ss_pred HHHHHhcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh----cccchHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 96666766799999999 9999999999999999999999999887 577899999999999999999999999999
Q ss_pred hhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCccccccc------hhhhhhHHH---HhccC--C
Q 000338 1075 LLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNHL--S 1138 (1639)
Q Consensus 1075 LLL~LalR~dEgn-----aliIqlLLL~~~EFqqRV~~Fv~~~~spEHW~qs~~------fhrkfPEk~---lg~~l--s 1138 (1639)
||||||+|++||+ ++|||++|+++ |||+||++||++ |+||||+ ++| ||++|||++ ++++. +
T Consensus 926 llL~Limr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~ 1002 (1517)
T KOG1883|consen 926 LLLCLIMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSS 1002 (1517)
T ss_pred HHHHHhcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCc
Confidence 9999999998887 55556666555 999999999997 9999999 888 899999965 55553 4
Q ss_pred CCCCCCcchhhHHHhhcCchhHHHHHHHhcCc-hhhHHHHHHhhccccccCCccchhhhHhHHhhhcCCch-----HHHH
Q 000338 1139 WKERYPTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG-----KLIV 1212 (1639)
Q Consensus 1139 ~~~~lPvYFGNVcLR~LPViDiVIhR~LE~~~-~k~letLL~~~g~LYkYHd~PvTFvY~tLhYy~~~L~~-----kLV~ 1212 (1639)
.++|||+||||||+|||||+|+|+|||||+++ .|.+++||+|+|.||||||+|+|||||||||||+||++ |||.
T Consensus 1003 ~~~~lPtyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~ 1082 (1517)
T KOG1883|consen 1003 SNVHLPTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVL 1082 (1517)
T ss_pred cccCCccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHH
Confidence 47899999999999999999999999999999 69999999999999999999999999999999999944 8999
Q ss_pred HHHhhcccCCCCCCcchhhhccCCCCCCCCChhHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCC
Q 000338 1213 RILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPS 1292 (1639)
Q Consensus 1213 ~ILg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~~~p~ 1292 (1639)
+|.++|++ ++|||+|.+|+++++..|||+++|||.||+||||++.+ ++ +|
T Consensus 1083 a~~~~lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~--------------~l--------------~~ 1132 (1517)
T KOG1883|consen 1083 AIATQLSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG--------------KL--------------TP 1132 (1517)
T ss_pred HHhhhhhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC--------------CC--------------CC
Confidence 99999988 66999999999999999999999999999999988843 21 23
Q ss_pred CCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhhhcc-----------------------------
Q 000338 1293 NVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNI----------------------------- 1343 (1639)
Q Consensus 1293 ~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLVdvvv~~----------------------------- 1343 (1639)
+|+.+||||+||+||++||+|| +|||+|++|++|..++++|+|++++.
T Consensus 1133 ~f~ncdwR~~e~~n~~a~al~~---~cvelma~~~sgp~~asalinv~~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l 1209 (1517)
T KOG1883|consen 1133 PFVNCDWRFNEFPNPGAHALYV---TCVELMALPVSGPTVASALINVMQMKQHARPFNQLIVNATGLLITALPEPYWNAL 1209 (1517)
T ss_pred CCcccccccccCCCcccccccc---chhhhcCCCCCcHhHHHHHHHHHhhCCCCCchhHHHHHHHHHHHhcCCcHHHHHH
Confidence 5666999999999999999985 77999999999998888877766544
Q ss_pred -----------CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHH
Q 000338 1344 -----------QPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLI 1412 (1639)
Q Consensus 1344 -----------~~~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~I 1412 (1639)
+.+.+|+++|+||.-+|+|+++++|++||+|.|++ +.++|+-.|+|||.-+|+||+ |||++++|..+
T Consensus 1210 ~d~lv~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkt 1287 (1517)
T KOG1883|consen 1210 HDRLVAVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-AISHSVWLHCSISLLSFFSRE-YTERLLPCVKT 1287 (1517)
T ss_pred HHHHHHHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-HHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHH
Confidence 44567889999999999999999999999999999 999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcc-CccccCCCCCcccccccccccccCCcccccccCc-chhHHHHH-HHHHHHh
Q 000338 1413 QACGLLLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS-TAIGNIVA-LLHSFFS 1489 (1639)
Q Consensus 1413 NAiGLLLAaLP~~f~~~Ly~ei~~vik~-~w~l~d~k~s~~elDs~~~y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~ 1489 (1639)
+++||.+++||.+|+..+|.|..|..-+ .||++|++.+.+|.| +||...||.|+.++|+. +.+|++++ .+|++|.
T Consensus 1288 e~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~ 1365 (1517)
T KOG1883|consen 1288 EKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCKYFFAGDIVKNTAEAIFA 1365 (1517)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--CceeecchHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999998 899999999999988 99999999999999988 99999999 9999999
Q ss_pred cCChhhhhhHHHHHhhcCccchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhh
Q 000338 1490 NLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADL 1569 (1639)
Q Consensus 1490 h~~~~~L~~~~~~i~~LrPv~TeaqL~~~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~I 1569 (1639)
+++.+|..++.-++.+.||+++.++...+++.+||.+||.....+.+.++...+.--..+++||..|..+.++....++.
T Consensus 1366 nLp~~l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~ 1445 (1517)
T KOG1883|consen 1366 NLPPKLRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLLPSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSN 1445 (1517)
T ss_pred cCCHHHHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccCchhhhCCCccCCchhhhhhhhhHHHHHHHHhc
Confidence 99999999999888999999999999999999999999999998999999888888888999999888888999999999
Q ss_pred hhhhceeeEEeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcccCCCCCCchhhccCcccc
Q 000338 1570 IDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMV 1635 (1639)
Q Consensus 1570 CDFLYHIYMFVG~g~~~qd~~K~~vE~l~l~~kiI~~LrP~LQ~rLrHL~~d~~ss~~aa~h~~~~ 1635 (1639)
.|+.+|+-+++||||.||.++|+.+.+|+++|+|-+-++|.+||.+.|.+..+++++||+.|..+.
T Consensus 1446 ~~~qqqlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1446 HPTQQQLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQHPHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred chHHHHHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhccCCCccccCCcchhccCc
Confidence 999999999999999999999999999999999999999999999999999999999999997653
No 2
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=100.00 E-value=3e-217 Score=1995.36 Aligned_cols=987 Identities=29% Similarity=0.438 Sum_probs=867.9
Q ss_pred HHHHHHHHHHhhcCCChhhhhhhheeccccCCCCCCCCCcceeccchhhHHHHHHHHHHccc-----ccccccchhhhHh
Q 000338 459 ERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKL-----TNSEVNCWHDWLI 533 (1639)
Q Consensus 459 e~a~rc~~~~~r~~~s~d~w~~vl~~ap~~~~~~~~~~~~~~f~~~mi~ea~i~r~~~ll~~-----~~~~~~~w~eWl~ 533 (1639)
+.=.|.++..||..=|.|-=--+| +.++|..+ ....=|..++=|+|+|.. ++++.++|+ |++
T Consensus 276 ~~q~~lL~~vL~Qp~srd~v~~~l------~~~~~k~~------~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~-W~h 342 (1341)
T PF11573_consen 276 EPQTRLLYYVLRQPYSRDMVCSML------GLQQQKQR------CPALEELLVDLIIEAMEESESEDENEPINRWQ-WLH 342 (1341)
T ss_pred chHHHHHHHHHcCcchHHHHHHHh------cccccCcc------chHHHHHHHHHHHHHHHHHhcCCCCCCccchH-HHH
Confidence 456789999999988888544443 33322221 111224445555666665 345669999 999
Q ss_pred hhhHHHHHHhcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCC
Q 000338 534 FSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCT 613 (1639)
Q Consensus 534 fsd~f~fl~~~~~~df~~fi~kL~~r~~~gd~~~~~~nhv~wllaqii~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~ 613 (1639)
||||++|||++||+||.+|++||.+++++.+ ++.++|||||+|+|+|+++++||.|++|.++|.+..++|.+++++...
T Consensus 343 ls~~viy~~l~~~i~F~~~v~~L~~kL~~~~-~~r~Rd~vMWvllQ~is~~i~~n~lsd~~~~v~~L~~~Ly~e~e~l~~ 421 (1341)
T PF11573_consen 343 LSSQVIYFMLFQFISFPDFVKKLHEKLTGRN-YRRGRDHVMWVLLQFISGSIQKNPLSDDFQPVLDLYNLLYPEKEPLPV 421 (1341)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-eeeccchhHHHHHHHHhhhhccccchhhHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999855 788999999999999999999999999999999999999999999877
Q ss_pred CCCCCcchhhhhhccccceEEEe-eccch--HHhhcHHHhhh-hhhHHHHHHHhhcccccccccccCccceeeeeeehh-
Q 000338 614 DPNNPQSILLDFISSCQNLRIWS-LNTST--REYLNNEQLQK-GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSY- 688 (1639)
Q Consensus 614 d~n~pqs~~~df~~s~q~l~iw~-~n~~~--~~~L~~~~~q~-~k~~~eWw~~~~kg~~~~d~~n~DD~~iamL~vlss- 688 (1639)
...||++...+|+++| ||. |||++ +.+..++++.+ .|+++|||++..+|.+ +.|||+++.||+|+++|
T Consensus 422 pd~~~~~~v~~~aaaC----iWi~L~kk~~~~~~~~~~~i~~~lk~~~e~l~~~~~~~~---~~n~d~~~~~~lavl~Na 494 (1341)
T PF11573_consen 422 PDDNPPSCVRFFAAAC----IWIHLSKKAQSKNYEINRQIPEHLKQIHEFLQHLTSPNN---IMNLDMRSDYMLAVLCNA 494 (1341)
T ss_pred CCCCcHHHHHHHHHHH----HHHHHHhhccccccccccCCcHHHHHHHHHHHHHhcCcc---ccccccccchhhhhhhhh
Confidence 7777999999999999 775 67766 55568899988 4999999999876555 89999999999999986
Q ss_pred -cccchhhhHHHHhhccCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhh----cCCccC-
Q 000338 689 -TMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF----GGQVVA- 762 (1639)
Q Consensus 689 -T~a~P~~Dtvm~~l~~~~v~e~ipG~~~~pn~~i~a~~~~~PLpmsLLDsLTvh~KmsLi~qI~~~lf----~~~~vP- 762 (1639)
++++|.++++|+|+...+..+.-+++...++.+++|+++++||||++||+||+|+||+|++||+++++ +|+.+|
T Consensus 495 Ys~~~~~~~~vm~~l~~~i~g~~~~~~~~~~~~~~~a~~~~~Plpm~lLd~LT~h~k~sL~~~i~~~l~~~a~~k~~~P~ 574 (1341)
T PF11573_consen 495 YSTDQPYFDRVMNWLVEAIDGEPDPSQPFELSYGRMAFNKTSPLPMSLLDSLTVHSKMSLIHSIVTHLFKFAQSKQPVPA 574 (1341)
T ss_pred hccCcHHHHHHHHHHHHHhccCCCCCCCCCCCccccccCCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCc
Confidence 58999999999999888888755554446688999999999999999999999999999999999875 478999
Q ss_pred ----ChhHHHHHHHhhhcccc-hhhHhhhhhhhhcCc-----hhhh--hcchhhHHHHHhhccccccccccCcchhHHHH
Q 000338 763 ----SIAMVETYTRLMLLAPH-SLFRSLFSHLAQRNP-----SLLA--KVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYD 830 (1639)
Q Consensus 763 ----SPAlVETYsRLLvyte~-sL~~k~f~~LsQ~~p-----sv~k--a~giL~~LLEilSYRL~p~YRyqlks~~llhs 830 (1639)
+||+||||+|+|+|+|+ +||.|.| .+|..| .++| +||++|+|||||||||+++++| +|.+.|+|.
T Consensus 575 ~~~~s~alvETY~rlL~~~eiesL~~r~l--~s~~~~~~~~~~~~k~~a~~~l~~LlEilsYRL~~l~~~-~k~~~L~~l 651 (1341)
T PF11573_consen 575 VFETSPALVETYSRLLVYKEIESLGIRSL--ASQLVPDRSPNTVQKSQAWGQLHTLLEILSYRLHHLQPY-YKVQLLSHL 651 (1341)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHh--HHhhcccccccccccccchHHHHHHHHHHHhcccccCcc-chHHHHHHH
Confidence 99999999999999999 5899988 677777 7777 9999999999999999665555 887776777
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---------cccc-ccCCCCcchhhHhHHHHHHHHHHHHHHhcccc
Q 000338 831 ITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSL-KREGKGSTEFTETLNRITVIALAIIIKTRGIA 900 (1639)
Q Consensus 831 L~~ii~~~~nq~q~H~llr~lEs~~LRLIlsL~s---------f~~v-q~~~~~ps~~SEELNR~LILTLARsiKitGia 900 (1639)
.+.+ ..+++|+||+++|+||+|||||+++++ |+.. |.++...+++||||||++|+||||+|||||++
T Consensus 652 ~~~~---~~~~~~n~qL~~~~E~~~Lrli~~Lgs~~~~~~~~~~~~~~k~Pk~~~~~~seELNR~lIltLARsikitg~~ 728 (1341)
T PF11573_consen 652 HTLI---SVNQPNNHQLYRLLENTCLRLITGLGSSEKQPQLSRFFNECKNPKTFTSQESEELNRILILTLARSIKITGIG 728 (1341)
T ss_pred HHHh---ccCccccHHHHHHHHHHHHHHHHHcCccccchHHHHHHHhccCccccccccCHHHHHHHHHHHHHHHhccccc
Confidence 6544 457888999999999999999999987 2322 23555668899999999999999999999866
Q ss_pred cch-hhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhh
Q 000338 901 DAD-HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKT 979 (1639)
Q Consensus 901 d~~-~g~~~k~~L~~Im~ntph~WpekTLr~FP~~Lre~f~~~~D~~~l~~q~~qql~ttV~ee~rq~~Sms~E~~~V~~ 979 (1639)
+.. ++.||+++|++||+++||+||+||++|||++|+++|+++.+++ ++|||++++|++||++|+++++|++||+.
T Consensus 729 ~~~~~~~~~~e~L~~i~~~t~h~Wp~~Tl~~FP~~l~~~~~~~~~~~----~~~~~~~~~ve~e~~~~~~~~~e~~~v~~ 804 (1341)
T PF11573_consen 729 ADSQSQEWCKEFLEQIMANTPHGWPEKTLRCFPDFLREFFEQNNDTR----EPKQQQKKQVEEEYRQWLSMSNENQIVMH 804 (1341)
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCchHHHHhCCHHHHHHHHhCCCCC----cccHHHHHhHHHHHHHHHccCChHHHHHH
Confidence 544 7799999999999999999999999999999999999984443 89999999999999999999999977777
Q ss_pred hhcccCCCCCcchHHHHHHHhhCC--CCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhccccCCchhHHHHHHH
Q 000338 980 YLSHSFPQHRQYLCAGAWILMQGH--PENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 1057 (1639)
Q Consensus 980 yi~hf~p~~~~fLC~l~~ml~e~~--~e~I~~~~lyrVLe~isprevta~ir~fvDyLv~e~~~elq~g~~~Q~lv~kcv 1057 (1639)
|++| ++|++|||++|||+|+++ +++|++++ |||||+||||++++|+||||||||+|+++ .+++++ ++||+
T Consensus 805 f~~~--~~~~~fLC~i~~~l~~~~~~~~~i~~~~-y~vLe~i~p~~l~~~i~~fvDylv~e~~~----~~~~~~-~~k~v 876 (1341)
T PF11573_consen 805 FSDH--NTHPLFLCVIWKMLMENQDETENISSVF-YKVLERISPRELTAHIRTFVDYLVYEFKV----SQDGQQ-LFKCV 876 (1341)
T ss_pred hccC--CCCceeHHHHHHHHHhhhcccccccHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcHHH-HHHHH
Confidence 7766 679999999999999433 67899987 99999999999999999999999999985 234556 89999
Q ss_pred hHhhhhhhhccccchhhhhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCccccccc------hhh
Q 000338 1058 ANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKR 1126 (1639)
Q Consensus 1058 ~~LndmIWkynIVpLDRLLL~LalR~dEgn-----aliIqlLLL~~~EFqqRV~~Fv~~~~spEHW~qs~~------fhr 1126 (1639)
++||+|||||||||||||||||++|++||+ ++|||++|++++||||||++||++ ++||||+++|| ||+
T Consensus 877 ~~L~~~iw~~~ivplDrllL~L~~r~~~d~~a~i~~~Ii~~lll~~~ef~~Rv~~F~~~-~~~ehw~~~~~~~k~~~yh~ 955 (1341)
T PF11573_consen 877 DTLNDMIWKYNIVPLDRLLLALALRPHDDNDAQICFQIIQLLLLKSPEFQNRVQWFVKI-NPPEHWTQSDWFKKHLEYHS 955 (1341)
T ss_pred HHHHHHHHHhceeeHHHHHHHHhccCCCchhhHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCHhhcccchHHHHHHHHHH
Confidence 999999999999999999999999997776 467899999999999999999999 99999999999 689
Q ss_pred hhhHHH----HhccC-----CCCCCCCcchhhHHHhhcCchhHHHHHHHhcCc---hhhHHHHHHhhccccccCCccchh
Q 000338 1127 VELQKA----LGNHL-----SWKERYPTFFDDIAARLLPVIPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSF 1194 (1639)
Q Consensus 1127 kfPEk~----lg~~l-----s~~~~lPvYFGNVcLR~LPViDiVIhR~LE~~~---~k~letLL~~~g~LYkYHd~PvTF 1194 (1639)
||||++ +++++ +++++|||||||+|+|||||+||||||+||+++ .|+||++|++|||||||||+|+||
T Consensus 956 kfPE~f~~e~~~~~~~~~~~~~~~~lPvYfgn~~lR~LPVlDivi~R~lE~~~~~~~~~le~lL~~~~~LyryH~~P~tf 1035 (1341)
T PF11573_consen 956 KFPEKFYFEALGSHTSSEESSQNPHLPVYFGNVCLRLLPVLDIVIHRFLELPAPPLSKSLETLLDHYGPLYRYHDRPVTF 1035 (1341)
T ss_pred hCCcccCchhhccccCcccCCCCCCCCchhccHHHHHhhhHHHHHHHHHHhcchhhHHHHHHHHHHhhHHHHcCCcchHH
Confidence 999965 55553 468899999999999999999999999999993 888999999999999999999999
Q ss_pred hhHhHHhhhcCCchH----HHHHHHhhcccCCC---CCCcchhhhccCCCC--CCCCChhHHHHHHHHHHhccccccccC
Q 000338 1195 VRDILAYFYGHLPGK----LIVRILNVFDLSKI---PFSESFPQHISSSNP--VMCPPLDYFATLLLGLVNNVIPALNYN 1265 (1639)
Q Consensus 1195 vY~tLhYy~~~L~~k----LV~~ILg~Ld~~r~---plSEsF~~y~~~~~~--~~~P~~~Yy~~Ll~RLvnnvlp~~~~~ 1265 (1639)
||+|||||||+|+++ ||++|+|+++++|+ +|||+|.+|+++++. +|+||++||++||+|||+++
T Consensus 1036 ~y~tL~yy~~~l~~~~kk~Lv~~i~g~l~~~~~~~~~lSe~f~~~~~~~~~~~~~~P~~~Y~~~Li~rL~~~~------- 1108 (1341)
T PF11573_consen 1036 LYSTLHYYEGKLRGRPKKKLVSAILGSLDESRPPGWPLSESFQQYLHQKSSPEVWVPDLDYYMELIDRLVDTI------- 1108 (1341)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHhhcccccCCCcccCHHHHHHhcccCCCCCCCCcHHHHHHHHHHHHHhc-------
Confidence 999999999999996 99999999999996 499999999997763 69999999999999999776
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhhhccCc
Q 000338 1266 SKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1345 (1639)
Q Consensus 1266 ~~~~~~~dgs~~~~~~~~p~~s~~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLVdvvv~~~~ 1345 (1639)
+++ .+|+.|+.+||||+|||||++|||| ++||||||||++|++||+||||||++.++
T Consensus 1109 -------~~~-------------~~~~~f~~~dwrf~Ef~np~a~aL~---~~ciElmalP~~p~~v~~aLidvv~~~~~ 1165 (1341)
T PF11573_consen 1109 -------DGI-------------NPPPPFVATDWRFNEFPNPAAHALY---VTCIELMALPVSPEDVANALIDVVVKGYS 1165 (1341)
T ss_pred -------ccc-------------CCCCCCCCCCcchhcCCCHHHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Confidence 333 2355788899999999999999998 58899999999999999999999998776
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChh
Q 000338 1346 TLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPD 1425 (1639)
Q Consensus 1346 ~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~INAiGLLLAaLP~~ 1425 (1639)
.+ |.+ . +..||||||||||+||++
T Consensus 1166 ~~--------------------P~~------------------------~------------i~~~iNaigLiltaLP~~ 1189 (1341)
T PF11573_consen 1166 VI--------------------PRE------------------------Q------------IHSWINAIGLILTALPES 1189 (1341)
T ss_pred CC--------------------CHH------------------------H------------HHHHHHHHHHHHHhCcHH
Confidence 66 442 1 237999999999999999
Q ss_pred HHHHHHHHHHHHhccCccccCCCCCcccccccccccccCCcccccccCc---chhHHHHHHHHHHHhcCChhhhhhHHHH
Q 000338 1426 FHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS---TAIGNIVALLHSFFSNLPQEWLEGTHVI 1502 (1639)
Q Consensus 1426 f~~~Ly~ei~~vik~~w~l~d~k~s~~elDs~~~y~l~d~t~a~q~~t~---t~~~~ilAL~Ha~~~h~~~~~L~~~~~~ 1502 (1639)
||+++|+|+++++++..+.. .++. ..||+.|||+...+..++ +.+.+++||+||+|||+++|+|+.++++
T Consensus 1190 Y~~~l~~~ii~~l~s~~~~~-~~~~------~~pf~~~~F~~~~~~~l~~~~~~~~~~lal~ha~w~H~~i~qL~~lp~~ 1262 (1341)
T PF11573_consen 1190 YWNVLHDRIIEVLTSPEMTN-LTYR------CSPFELFNFDNYEESMLEKMTNPYSYILALAHAYWHHCNIGQLTSLPQF 1262 (1341)
T ss_pred HHHHHHHHHHHHhCCccccc-cccC------CChhHhhccchHHHHHHHhhhhhHHHHHHHHHHHHHhcCHHHHHHhHHH
Confidence 99999999999999987543 2211 368999999999999888 9999999999999999999999999999
Q ss_pred H-hhcCc-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhcee-eEE
Q 000338 1503 I-KHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHV-VHY 1579 (1639)
Q Consensus 1503 i-~~LrP-v~TeaqL~~~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~ICDFLYHI-YMF 1579 (1639)
+ ++++| |+||+||+|+|||||||||||+.||++++.++++++|+|++.|||+.. +++++|+|+|||||||| |||
T Consensus 1263 ~~e~l~p~VkTE~Qlly~chLV~PfL~Rf~~er~~~~~~i~i~ly~~l~~vd~~~~---~~~l~~~d~ICDllYhiKYmf 1339 (1341)
T PF11573_consen 1263 LKEKLKPHVKTEEQLLYLCHLVGPFLQRFMRERTRCLMDITIELYELLKQVDKAQE---GVELKYEDPICDLLYHIKYMF 1339 (1341)
T ss_pred HHHhhcchhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc---CccceehhhHHHHhhhheeee
Confidence 7 99999 999999999999999999999999999999999999999999999633 46999999999999999 999
Q ss_pred ec
Q 000338 1580 EG 1581 (1639)
Q Consensus 1580 VG 1581 (1639)
||
T Consensus 1340 vG 1341 (1341)
T PF11573_consen 1340 VG 1341 (1341)
T ss_pred cC
Confidence 99
No 3
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=3.3e-68 Score=637.01 Aligned_cols=946 Identities=18% Similarity=0.193 Sum_probs=573.0
Q ss_pred HHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHcccccccccchhhhHhhhhHHHHHH
Q 000338 464 CIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLV 542 (1639)
Q Consensus 464 c~~~~~r~~~s~d~w~~vl~~ap~~~~~~~-~~~~~~~f~~~mi~ea~i~r~~~ll~~~~~~~~~w~eWl~fsd~f~fl~ 542 (1639)
.+|-.|+---|.| =-..|-+ ..++-| -|+=|----+.|||+-.-....+++. .++.+.|+ |.+.|.+..|++
T Consensus 296 ll~~Ileqp~~RD-v~~Ml~L---~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~--~spi~~l~-w~~Ls~~liygv 368 (1517)
T KOG1883|consen 296 LLRYILEQPYSRD-VMAMLSL---HKPQKQRCPTLEEQLISLMICAMEMAEAESLPE--TSPIPRLQ-WDHLSSQLIYGV 368 (1517)
T ss_pred HHHHHHhhhcchh-HHHHhhc---CchhhhcCCcHHHHhHHHhhhcccccccccccc--CCCCChhH-HHHHHHHHHHHH
Confidence 4555566555555 2222222 222223 67777777788888876666665544 34445886 999999999999
Q ss_pred hcccccHHHHH----HHHHHh-hccCCccccccchHHHHHHHHHHHHHHHhhhhcc-ccccchhhhhhhccccc---CCC
Q 000338 543 KSGCIDFVDFV----DKLVSR-LQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD-SRKVETTRKILSFHRED---RCT 613 (1639)
Q Consensus 543 ~~~~~df~~fi----~kL~~r-~~~gd~~~~~~nhv~wllaqii~~~~v~~~~~~~-~~~v~t~~~ilsf~~~d---~~~ 613 (1639)
.+.+..|.+|| .||+++ +..| +++++|.+.|+|...+.+|++..- ..-|+-+- +-|--+= ..+
T Consensus 369 l~~~~~~~h~v~~l~~~L~~~~~~r~------rdq~mwI~~qviss~i~~~al~D~~lev~kL~n--~lf~~dlv~~~~p 440 (1517)
T KOG1883|consen 369 LFQFLSFKHFVLVLHNKLKRCKLTRG------RDQLMWILLQVISSSIQKNALDDAFLEVVKLFN--LLFPGDLVWMGAP 440 (1517)
T ss_pred HHHHHhHHHHHHHHHHHHhhcCcccc------cchhheeeHHHhhhhhhhhhHHHHHHHHHHHHH--hhcCcceeeecCC
Confidence 99999999995 667766 8888 899999999999999999988651 11122121 2222111 256
Q ss_pred CCCCCcchhhhhhccccceEEEe-eccchHHhhcHHHhhh-----hhhHHHHHHHhhcccccccccccCccceeeeeeeh
Q 000338 614 DPNNPQSILLDFISSCQNLRIWS-LNTSTREYLNNEQLQK-----GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVS 687 (1639)
Q Consensus 614 d~n~pqs~~~df~~s~q~l~iw~-~n~~~~~~L~~~~~q~-----~k~~~eWw~~~~kg~~~~d~~n~DD~~iamL~vls 687 (1639)
|.|+++.... ++.+| ||+ |+|+ +..|+-+++. .|.=-++.+|..+.+-+| +||+.++.+||.+
T Consensus 441 din~~~~~r~-la~~~----iwi~L~Kk--a~~Df~d~~~plnh~Lr~H~~fLqq~vr~~~~m----~n~~kia~l~niy 509 (1517)
T KOG1883|consen 441 DINKALFARF-LAAAC----IWIHLEKK--ACTDFADKMPPLNHTLRSHIKFLQQGVRNFDSM----SNDAKIALLCNIY 509 (1517)
T ss_pred CcCHHHHHHH-HHHhh----hhhhhhhh--hccchhhccCcccHHHHHHHHHHHHHHHhhhhc----cchHHHHHHHHHH
Confidence 7898999988 99999 999 6887 5555555443 343335566665555543 6999999999999
Q ss_pred --hc----ccchhhhHHHHhhccCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHH--hhhcCC
Q 000338 688 --YT----MAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMED--SIFGGQ 759 (1639)
Q Consensus 688 --sT----~a~P~~Dtvm~~l~~~~v~e~ipG~~~~pn~~i~a~~~~~PLpmsLLDsLTvh~KmsLi~qI~~--~lf~~~ 759 (1639)
+| +..|+| .+.++++|+|... +|. ++..++|.+.++|||+++||+||+|+||+|+||... +.|...
T Consensus 510 ~~~t~~~~~~~Pm~-~LLe~i~~~~t~r-i~~----lst~~~A~~~~t~lpv~~lDslt~~skmsli~~~~~~l~sf~tv 583 (1517)
T KOG1883|consen 510 RTSTNMEKFIVPMG-QLLESISSNGTKR-IPE----LSTKRMAVNSFTALPVEFLDSLTVHSKMSLIHQCFQPLRSFSTV 583 (1517)
T ss_pred hccccccccCCcHH-HHHHHHhcCCccc-cCC----CCcceeeecccchhhHHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence 55 889998 8999999999988 663 577899999999999999999999999999999987 468999
Q ss_pred ccCChhHHHHHHHhhhcccchhhHhhhhhhhhcCchhhh-------------hcchhhHHHHHhhccccccccccCcchh
Q 000338 760 VVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLA-------------KVGVTPLVLEIVNYRLLPLYRYQGKTKT 826 (1639)
Q Consensus 760 ~vPSPAlVETYsRLLvyte~sL~~k~f~~LsQ~~psv~k-------------a~giL~~LLEilSYRL~p~YRyqlks~~ 826 (1639)
.+++++..||.+..+.+.++++..++++..+|++-++-- +++.++++.+++-||+..| .| .+.++
T Consensus 584 ~l~~aq~~~~va~~~~s~~~~~~~~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~Flsqllptv~~~h-ay-~~l~t 661 (1517)
T KOG1883|consen 584 RLKSAQVKETVAKACESEDYEMAVALLETYARLLVYVEIESLGISGEHQNVQAKDQCYFLSQLLPTVFKHH-AY-SKLHT 661 (1517)
T ss_pred EecccccchhhhhccccchhhhhhcccchhhhhheeeeeeccccCchhhhhhhHHhhhHHHHHHHHHHHHH-HH-HHHHH
Confidence 999999999999999999999999999999998766521 6789999999999999763 46 66666
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhh
Q 000338 827 LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVL 906 (1639)
Q Consensus 827 llhsL~~ii~~~~nq~q~H~llr~lEs~~LRLIlsL~sf~~vq~~~~~ps~~SEELNR~LILTLARsiKitGiad~~~g~ 906 (1639)
++....+-..++++..+.|+++++.|.+.++++... . ++.|+-.+--|.|.--|.+|
T Consensus 662 l~~~~syr~hhiq~~~r~~ll~~l~~~~lvp~~~~~-g-----------------~h~ci~s~a~rliTalk~ae----- 718 (1517)
T KOG1883|consen 662 LVEMFSYRTHHIQNHYRVQLLSRLHELFLVPQTNWA-G-----------------LHLCIESTALRLITALKSAE----- 718 (1517)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhhHHHHhh-h-----------------hhhhHHHHHHHHHHHhcccc-----
Confidence 777777888888988889999999999999988322 1 23334444444433333322
Q ss_pred hHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhcccCCCCcchhhHHHHHHHHHHH-HHhcc--C----CCC--ChhhH
Q 000338 907 YLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQ-CTQLL--S----PSA--DPTYV 977 (1639)
Q Consensus 907 ~~k~~L~~Im~ntph~WpekTLr~FP~~Lre~f~~~~D~~~l~~q~~qql~ttV~ee-~rq~~--S----ms~--E~~~V 977 (1639)
+=+.++.||.-.+++.+ +.+.-+++....+=. .|-.+ . ++. +..++
T Consensus 719 ------------------------~~~q~~~ffs~k~pg~~-psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml 773 (1517)
T KOG1883|consen 719 ------------------------MQPQFARFFSDKVPGQV-PSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTML 773 (1517)
T ss_pred ------------------------hhHhHhhhcccCCCCcC-cccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHH
Confidence 12223333332222211 112222322222111 11111 0 111 12333
Q ss_pred hhhhcccC---CCCCcchHHH-H--HHHhhCCCCCCChhhH----------HHHHhhcChhHHHHhhhhhhcceeeehhh
Q 000338 978 KTYLSHSF---PQHRQYLCAG-A--WILMQGHPENINSANL----------LRVLREFSPEEVTSNIYTMVDVLLHHIHV 1041 (1639)
Q Consensus 978 ~~yi~hf~---p~~~~fLC~l-~--~ml~e~~~e~I~~~~l----------yrVLe~isprevta~ir~fvDyLv~e~~~ 1041 (1639)
.++|+|.- |.+.+- |-= | +-++++ ++.+.+|+ ||.+..+|+|- ||+.+...
T Consensus 774 ~tIi~~t~h~W~ektls-~FP~~aL~a~~~q--~~~~~en~qql~~~V~ne~r~~tSmsnen---------~~V~~yl~- 840 (1517)
T KOG1883|consen 774 PTIINTTPHGWPEKTLS-CFPKWALDAIFAQ--NNSPAENTQQLKKDVENEYRMWTSMSNEN---------DIVIHYLE- 840 (1517)
T ss_pred HHHHhcCCCCCchhhhh-hCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhcCCCCcc---------hhhhhhcc-
Confidence 45555321 222111 221 1 122442 34555552 44444444221 33333322
Q ss_pred ccccCCchhHHHHHHHhHhhhhhhh-cccc--------------------chhhhhhhhccCCCCCc-------------
Q 000338 1042 ELQRGHSLQDLLFKACANISFFVLT-HELL--------------------PLDILLLALIDRDDDPH------------- 1087 (1639)
Q Consensus 1042 elq~g~~~Q~lv~kcv~~LndmIWk-ynIV--------------------pLDRLLL~LalR~dEgn------------- 1087 (1639)
++ ... ...|.-.--.|+|. +||= +|=-+|++=+.-.++|.
T Consensus 841 ---~~--~p~-~~lCll~~~~m~~~teNIns~~yrVLe~isprelva~~~tlvDyLvad~~t~~~~e~~l~k~~~~la~m 914 (1517)
T KOG1883|consen 841 ---DR--DPP-LFLCLLFAYKMVDETENINSEFYRVLEKISPRELVAHGRTLVDYLVADAKTSDCGEKTLKKCAKALALM 914 (1517)
T ss_pred ---CC--Cch-hHHHHHHHHHhcccccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHHHH
Confidence 22 111 22344433344443 1211 11111222122223332
Q ss_pred -----hh---hHhhhhcCc----HHHHHH---HHHHHHcCCCCCccccccchh-hhhhHHHHhcc----CCCCCCCCc-c
Q 000338 1088 -----AL---RIVITLLDR----QELQQR---VKLYCMNRGPPEHWLYSGLFK-RVELQKALGNH----LSWKERYPT-F 1146 (1639)
Q Consensus 1088 -----al---iIqlLLL~~----~EFqqR---V~~Fv~~~~spEHW~qs~~fh-rkfPEk~lg~~----ls~~~~lPv-Y 1146 (1639)
.+ |..+.|+.+ +|=+=. ++.++. .||.=..=.||+ +.-||..+.+. +.....||= |
T Consensus 915 vwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLl---tpdf~~RI~~yck~nsPeHwl~~~~~k~~~yhka~pe~~ 991 (1517)
T KOG1883|consen 915 VWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLL---TPDFRNRIRWYCKQNSPEHWLTEWIKKHVKYHKAYPEKE 991 (1517)
T ss_pred HHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhc---CHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcchHH
Confidence 11 112224444 333322 233333 334444444775 77888665443 222233444 4
Q ss_pred hhhHHHhh-------cCc-hhHHHHHHHhcCchhhHHHHHHhhccccccCCccchhhhHhHHhhhcCCchHHHH-HHHhh
Q 000338 1147 FDDIAARL-------LPV-IPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIV-RILNV 1217 (1639)
Q Consensus 1147 FGNVcLR~-------LPV-iDiVIhR~LE~~~~k~letLL~~~g~LYkYHd~PvTFvY~tLhYy~~~L~~kLV~-~ILg~ 1217 (1639)
+.-..-|. ||+ +|=|+-|+|-.- +.-+-++|+--+ +| +.++--|-. .++=.
T Consensus 992 ~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~-d~vlhr~lE~~~----~~---------------k~~~~lL~hls~lyk 1051 (1517)
T KOG1883|consen 992 ACELARQYDSSSNVHLPTYFGNVCLRLLPVM-DQVLHRFLELQG----VE---------------KLLPQLLDHLSMLYK 1051 (1517)
T ss_pred HHHHHHhcCCccccCCccHHHHHHHHHhccH-HHHHHHHHHHhh----HH---------------HHHHHHHHHHHHHHh
Confidence 44455555 576 577888887421 222222222221 11 111111111 11111
Q ss_pred cccCCCCCCcchhhhccCCCCCCCCChhHHHHHH------HHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCC
Q 000338 1218 FDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL------LGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGP 1291 (1639)
Q Consensus 1218 Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll------~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~~~p 1291 (1639)
+.+.++ + |.- | .+.||-.-+ +.||-++.--+++.+-| ++ | .|+.. |+|.
T Consensus 1052 fH~~pi--t--fly-----n-----tl~y~~~hL~~~p~kk~lv~a~~~~lsei~lS----E~---f--~k~~~--q~~a 1106 (1517)
T KOG1883|consen 1052 FHDRPI--T--FLY-----N-----TLHYYEHHLRDRPLKKKLVLAIATQLSEIRLS----EA---F--EKFNH--QKGA 1106 (1517)
T ss_pred cCCCce--e--hhH-----H-----HHHHHHhhhhcCcchhhHHHHHhhhhhhCccc----hh---H--HHHhc--cCCC
Confidence 222211 1 211 0 144444322 23343443333333211 11 1 12222 3455
Q ss_pred CCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHH-HHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCCCC
Q 000338 1292 SNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQ-IVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTS 1370 (1639)
Q Consensus 1292 ~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~-Vv~aLVdvvv~~~~~l~q~~~~~~~~~~~~~~~~~~Pts 1370 (1639)
|...+.|. |.+ +.. =.+.-|+-|.+|.- -++.= .+.-|.. |.|..--.-|--..+|.+
T Consensus 1107 p~~pel~y-~~s---------Li~--rLvdt~~~~l~~~f~ncdwR----~~e~~n~-----~a~al~~~cvelma~~~s 1165 (1517)
T KOG1883|consen 1107 PWSPELDY-YMS---------LID--RLVDTLDGKLTPPFVNCDWR----FNEFPNP-----GAHALYVTCVELMALPVS 1165 (1517)
T ss_pred CCCCcHHH-HHH---------HHH--HHHhhcCCCCCCCCcccccc----cccCCCc-----cccccccchhhhcCCCCC
Confidence 55444443 111 111 11222333333211 00000 0000000 001000001111122332
Q ss_pred CCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCccccCCCCC
Q 000338 1371 PSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRS 1450 (1639)
Q Consensus 1371 ps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~INAiGLLLAaLP~~f~~~Ly~ei~~vik~~w~l~d~k~s 1450 (1639)
|+ +-...+||. + -.++..--.--+|+||+||+++|||++||.+||+|++.||.+.-.+.... .
T Consensus 1166 gp------------~~asalinv---~-~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~-~ 1228 (1517)
T KOG1883|consen 1166 GP------------TVASALINV---M-QMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETA-N 1228 (1517)
T ss_pred cH------------hHHHHHHHH---H-hhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhh-c
Confidence 22 111122331 1 11111111124799999999999999999999999999999843222111 1
Q ss_pred cccccccccccccCCcccccccCcchhHHHH-HHHHHHHhcCChhhhhhHHHHH-hhcCc-cchHHHHHHHHHHHhcchh
Q 000338 1451 LGELDSAVGYALLDPTWAAQDNTSTAIGNIV-ALLHSFFSNLPQEWLEGTHVII-KHLRP-ITSVAMLRIVFRIMGPLLP 1527 (1639)
Q Consensus 1451 ~~elDs~~~y~l~d~t~a~q~~t~t~~~~il-AL~Ha~~~h~~~~~L~~~~~~i-~~LrP-v~TeaqL~~~~rLvGP~L~ 1527 (1639)
.+ |+|.+||+.-.+...++...++++ |++|++|+|++++.|+.++++. +++.| |+||+||+|+||++||||+
T Consensus 1229 ~g-----f~~~~fd~~~~s~l~~~ps~a~Tl~a~s~s~~lh~si~~lsf~sr~yt~~ll~cvkte~~llyl~~L~~pfl~ 1303 (1517)
T KOG1883|consen 1229 LG-----FEFILFDFYEESLLLNEPSRARTLNAISHSVWLHCSISLLSFFSREYTERLLPCVKTEKQLLYLLHLVGPFLQ 1303 (1517)
T ss_pred CC-----CceeeccccchhccccCCccchhhHHHHhHHHhhcchHHHHhhhHHhHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 12 788999999999999999999999 9999999999999999999996 99999 9999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhcee-eEEeccCCCCCCCCCCchhhhhhhhHhhhh
Q 000338 1528 RLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHV-VHYEGQGGPVQASSKPRPEVLVLTGRAAES 1606 (1639)
Q Consensus 1528 R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~ICDFLYHI-YMFVG~g~~~qd~~K~~vE~l~l~~kiI~~ 1606 (1639)
|++.|++|++.+++.++|.++..+|+.+ |++.|||+||||+||| |+|+| |.+|+.+| +++.+
T Consensus 1304 r~qle~~r~~~e~~~~l~d~l~s~~e~~-----v~l~ymdpicd~~yn~ky~~~G------divkn~~~------a~f~n 1366 (1517)
T KOG1883|consen 1304 RKQLESQRENFEIVVLLYDKLGSVDEEG-----VELVYMDPICDFLYNCKYFFAG------DIVKNTAE------AIFAN 1366 (1517)
T ss_pred HHHHHhhhhhhhhHHHHHHHhhhhhhcC-----CceeecchHHHHHhhhhhhhhh------HHHHHHHH------HHHHc
Confidence 9999999999999999999999989876 5999999999999999 99999 99999999 99999
Q ss_pred CCHhHHHHhccc
Q 000338 1607 LRPEVQHLLSHL 1618 (1639)
Q Consensus 1607 LrP~LQ~rLrHL 1618 (1639)
|+|.+|.|||++
T Consensus 1367 Lp~~l~drlrfi 1378 (1517)
T KOG1883|consen 1367 LPPKLRDRLRFI 1378 (1517)
T ss_pred CCHHHHhhhhhh
Confidence 999999999965
No 4
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=30.63 E-value=41 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000338 457 DWERAMRCIRHAIRATPS 474 (1639)
Q Consensus 457 ~~e~a~rc~~~~~r~~~s 474 (1639)
+|++|++|++.|++-.|.
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 799999999999998874
No 5
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=28.33 E-value=30 Score=41.31 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC------------CcccchHHHhhccccccccCCChhHHHH---HHHHHh
Q 000338 329 DKALIEWLHSCLDVIWLLVDED------------RCRVPFYELLRTGLQFIENIPDDEALFT---LILEIH 384 (1639)
Q Consensus 329 ~~~~~~w~~~cl~viw~lv~e~------------~~rvpfy~ll~~~~q~~e~~pddeal~~---l~~e~h 384 (1639)
.++|..||+.|+-- ..|. .+--|.|.+.++=.+-++++||.|++-+ +...||
T Consensus 244 V~aLn~WL~~~l~~----~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~ 310 (312)
T PF04782_consen 244 VKALNGWLKLCLMQ----EPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVH 310 (312)
T ss_pred HHHHHHHHHHhccc----cccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 57889999999833 2221 2345889999999999999999987654 344444
No 6
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=23.66 E-value=68 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000338 457 DWERAMRCIRHAIRATPS 474 (1639)
Q Consensus 457 ~~e~a~rc~~~~~r~~~s 474 (1639)
+|++|+.|.+.||+..|.
T Consensus 16 ~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPD 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHHCcC
Confidence 799999999999998885
No 7
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=22.63 E-value=65 Score=33.17 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=31.7
Q ss_pred cCCChhHHhHHHHHHHhhhhhhcCCCCcch----hHHHHHHHHhhhcc
Q 000338 116 QFPDQDQLRSVTESVLISMVVQCCSHVPRA----EFILFALRSLCSIG 159 (1639)
Q Consensus 116 qf~~~~ql~~~te~~~~~~~~qc~~h~p~~----~fll~~~~~l~~~~ 159 (1639)
....||++|...- |.++++||+.-++. ||-+||+|-||.-.
T Consensus 17 ~~~~Qd~vr~~~G---i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 17 NKEVQDLVRELGG---IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred CHHHHHHHHHcCC---hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 3456777776554 89999999987775 67799999999754
No 8
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=20.60 E-value=92 Score=21.32 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000338 457 DWERAMRCIRHAIRATPS 474 (1639)
Q Consensus 457 ~~e~a~rc~~~~~r~~~s 474 (1639)
++++|..|++.+++..|+
T Consensus 16 ~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 16 DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 589999999999987764
No 9
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=19.87 E-value=28 Score=42.74 Aligned_cols=33 Identities=27% Similarity=0.696 Sum_probs=28.9
Q ss_pred CcchhhhhHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcc
Q 000338 102 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPR 144 (1639)
Q Consensus 102 ~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~ 144 (1639)
.|+.|..||++|+.-|-+.. .-+++.|+-|-|-
T Consensus 139 ~~~~y~iD~~~LE~~~~~~~----------vkl~iLCnPHNP~ 171 (388)
T COG1168 139 DDGRYEIDFDALEKAFVDER----------VKLFILCNPHNPT 171 (388)
T ss_pred cCCcEEecHHHHHHHHhcCC----------ccEEEEeCCCCCC
Confidence 79999999999999998854 4588999999994
No 10
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=18.04 E-value=1.7e+02 Score=31.00 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=48.9
Q ss_pred hHHHhhccccccccCCChh--HHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCccccccccccccccccc
Q 000338 356 FYELLRTGLQFIENIPDDE--ALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPIT 433 (1639)
Q Consensus 356 fy~ll~~~~q~~e~~pdde--al~~l~~e~hrrrd~~~~hm~~ldqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~t 433 (1639)
|-++|.+. |+|++. .+.+ +-..+++.|+..|.++-.++. .++..
T Consensus 12 F~~ll~~~-----~~~~~~r~~l~~--~~~ekKw~li~~~~~~~~~~~---------------------------~~~~~ 57 (187)
T PF06371_consen 12 FEELLEEL-----NLPEEKRKELRN--LPPEKKWQLIQQHRQKQAKHS---------------------------SSSSK 57 (187)
T ss_dssp HHHHHHHT-----T--HHHHHHHHT--S-HHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHhc-----CCCHHHHHHHHC--CCHHHHHHHHHhHHHhccccc---------------------------hhhhh
Confidence 55666654 677653 2333 467788999999998877765 22333
Q ss_pred CCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhh
Q 000338 434 YPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVL 482 (1639)
Q Consensus 434 y~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~w~~vl 482 (1639)
+...-.....=|.....+..++.+. +.++.|+-+|||.| .+|.+..+
T Consensus 58 ~~~~~~~~~~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~-~~Wv~~Fl 104 (187)
T PF06371_consen 58 SKSKASAKSSPEWYIKKLKSRPSTS-KILKSLRVSLRTNP-ISWVQEFL 104 (187)
T ss_dssp -------CHHHHHHHHHHTTT--HH-HHHHHHHHHHHHS--HHHHHHH-
T ss_pred hhhhhhhhhhHHHHHHHHHccCccH-HHHHHHHHHhccCC-chHHHHhc
Confidence 3333334444456677777777776 89999999999965 57988765
Done!