Query 000338
Match_columns 1639
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 16:43:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000338.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_117-121//hhsearch_scop/000338hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 13.4 20 0.0015 11.1 0.1 13 799-811 22-34 (145)
2 d1ey1a_ a.79.1.1 (A:) Antiterm 4.0 91 0.0067 6.7 2.8 102 1209-1342 11-113 (139)
3 d1v8da_ c.140.1.1 (A:) Hypothe 4.0 80 0.0059 7.1 -0.3 21 125-145 59-79 (193)
4 d1qhda1 a.115.1.2 (A:1-148,A:3 3.8 98 0.0071 6.5 0.1 56 585-640 66-133 (213)
5 d1tuza_ a.39.1.7 (A:) Diacylgl 3.7 1E+02 0.0075 6.4 1.4 13 545-557 92-104 (118)
6 d1om2a_ a.23.4.1 (A:) Mitochon 3.6 1.1E+02 0.0078 6.3 1.8 12 888-899 41-52 (95)
7 d1g7oa1 a.45.1.1 (A:76-215) Gl 3.5 1.1E+02 0.0081 6.2 5.5 73 102-177 50-129 (140)
8 d1bu2a2 a.74.1.1 (A:149-250) V 3.0 1.3E+02 0.0097 5.7 2.0 20 1421-1440 16-35 (102)
9 d2pyqa1 a.279.1.1 (A:1-113) Un 2.9 1.4E+02 0.0099 5.6 3.3 43 309-362 60-104 (113)
10 d1bm9a_ a.4.5.7 (A:) Replicati 2.9 1.4E+02 0.0099 5.6 4.4 43 1158-1202 17-62 (120)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.40 E-value=20 Score=11.09 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.0
Q ss_pred HCCHHHHHHHHHH
Q ss_conf 0260358999863
Q 000338 799 KVGVTPLVLEIVN 811 (1639)
Q Consensus 799 a~giL~~LLEilS 811 (1639)
.|+...-++|+++
T Consensus 22 dw~~il~icD~I~ 34 (145)
T d1dvpa1 22 DWPSILLICDEIN 34 (145)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999995
No 2
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=91 Score=6.73 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983114689888930001004999988999568999999998600444446898888665565788999988778
Q 000338 1209 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1288 (1639)
Q Consensus 1209 kLV~~ILg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~LI~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~ 1288 (1639)
.++..++-+.+...-.+.+...++....+ .-..|..|+..|+.+...+. ...|....
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~-----------~~id~~I~----------- 67 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT-----------AYLDGLMK----------- 67 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHH-----------HHHHHHHT-----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-----------
T ss_conf 99999999998369999999999988345-43145899999999999837-----------88999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCC-CCHHHHHHHHHHHHHC
Q ss_conf 99998888894212379973036665300100101588-8978999888876440
Q 000338 1289 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 1342 (1639)
Q Consensus 1289 ~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLP-vsp~~Vv~aLIdvvv~ 1342 (1639)
.+ .+|.+...+ +--.+++ ..++.|++-++ +|+..+++.-|+++-+
T Consensus 68 ----~~--l~~~~~r~~-~~~~~IL--r~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 68 ----PY--LSRLLEELG-QVEKAVL--RIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp ----TC--CCSCTTTSC-HHHHHHH--HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred ----HH--HHHHHHHCC-HHHHHHH--HHHHHHHHHCCCCCCEEHHHHHHHHHHH
T ss_conf ----98--886487537-6789999--9999999971377761259999999999
No 3
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=4.01 E-value=80 Score=7.10 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCH
Q ss_conf 777988765432237888612
Q 000338 125 SVTESVLISMVVQCCSHVPRA 145 (1639)
Q Consensus 125 ~~te~~~~~~~~qc~~h~p~~ 145 (1639)
.+.+.-=|.|.+|||-|--||
T Consensus 59 ~~~~~~gi~lA~Q~CEHlNRA 79 (193)
T d1v8da_ 59 PPLLERGVHVAVQACEHLNRA 79 (193)
T ss_dssp HHHHTTTCEEEEECCGGGTTC
T ss_pred HHHHHCCEEEEEECHHHHHHH
T ss_conf 998751808987345565788
No 4
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=3.82 E-value=98 Score=6.52 Aligned_cols=56 Identities=32% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHC--------CCCCCCCC--CCC--CCCHHHHHHCCCCCEEEEEECCC
Q ss_conf 7785410143000001344400--------24457899--999--72112232202452479865032
Q 000338 585 LVMGALNSDSRKVETTRKILSF--------HREDRCTD--PNN--PQSILLDFISSCQNLRIWSLNTS 640 (1639)
Q Consensus 585 ~v~~~~~~~~~~v~t~~~ilsf--------~~~d~~~d--~n~--pqs~~~df~~s~q~l~iw~~n~~ 640 (1639)
+-+++|+-|.--||++|-++-| |+.+-+-+ -|. |||--|--.+++.--||.+=|.+
T Consensus 66 LGTTLLNLD~NYVe~aR~~Idy~~~Fid~VC~DEivREsqRNG~~PQS~~L~~Ls~~kfk~Inf~NsS 133 (213)
T d1qhda1 66 LGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSS 133 (213)
T ss_dssp CCCCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTTSCCSHHHHHHTSGGGGGGCCCCCS
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 01211146268888888899999999998737999999873688999878999853542476447806
No 5
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=1e+02 Score=6.40 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2666799899999
Q 000338 545 GCIDFVDFVDKLV 557 (1639)
Q Consensus 545 ~~~df~~fi~kL~ 557 (1639)
|.|||.+||..|+
T Consensus 92 g~I~f~efv~~LS 104 (118)
T d1tuza_ 92 DVVCLNDVSCYFS 104 (118)
T ss_dssp CCEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHH
T ss_conf 6461999999999
No 6
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.57 E-value=1.1e+02 Score=6.28 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999775254
Q 000338 888 IALAIIIKTRGI 899 (1639)
Q Consensus 888 LTLARsiKitGi 899 (1639)
.-|++++.+.|+
T Consensus 41 ~h~~nAi~Vc~q 52 (95)
T d1om2a_ 41 DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998278
No 7
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=3.46 E-value=1.1e+02 Score=6.17 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHHH---CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86023212999860099946776777988765---4322---37888612479999-99864205434310178896544
Q 000338 102 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLIS---MVVQ---CCSHVPRAEFILFA-LRSLCSIGYINWDTFLPSLLSSV 174 (1639)
Q Consensus 102 ~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~---~~~q---c~~h~p~~~fll~~-~~~l~~~~~~~wd~~l~~ll~~~ 174 (1639)
|.|+++.||+++..+-+ |+-.--|..|-- ++.. +.+.---.|+++|. ||+|+..--|.|++=+-..+..+
T Consensus 50 kKe~~~g~f~~~l~~t~---~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~ 126 (140)
T d1g7oa1 50 KKEASAGNFADLLAHSD---GLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNM 126 (140)
T ss_dssp TTTTTCTHHHHHHHHHH---HHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66641179999987579---999999999999999982735558876699999999986457516787888899999999
Q ss_pred HHH
Q ss_conf 320
Q 000338 175 SSA 177 (1639)
Q Consensus 175 ~~~ 177 (1639)
|..
T Consensus 127 s~~ 129 (140)
T d1g7oa1 127 AKQ 129 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 8
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=2.99 E-value=1.3e+02 Score=5.65 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 19935799999999998605
Q 000338 1421 QLPPDFHMQLYMEASRIIKE 1440 (1639)
Q Consensus 1421 aLP~~f~~~Ly~ei~~vik~ 1440 (1639)
..|++||-++|+.....|+.
T Consensus 16 kipe~~wpql~e~~s~tick 35 (102)
T d1bu2a2 16 KIPEDLWPQLYEAASTTICK 35 (102)
T ss_dssp TCCTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 69677849999998999999
No 9
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=2.94 E-value=1.4e+02 Score=5.59 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHC
Q ss_conf 71001124877567864410157999999889998887--5399765416998620
Q 000338 309 VTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLL--VDEDRCRVPFYELLRT 362 (1639)
Q Consensus 309 ~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~cl~viw~l--v~e~~~rvpfy~ll~~ 362 (1639)
.||=.+-.|+.|++ +-...--.|+=.. -+-+|+|+.||-||--
T Consensus 60 ~nfl~KKLGl~D~~-----------~ld~aI~~V~e~~g~s~r~K~R~~~YYllak 104 (113)
T d2pyqa1 60 KNFLMKKLGLADSE-----------SLMGGIQSVIETYGRSERNKYRAVVYYMLTK 104 (113)
T ss_dssp HHTTTTTSCCCSSH-----------HHHHHHHHHHHHHCTTCSCCBHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCH-----------HHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
T ss_conf 80899970899748-----------7999999999997035577530220678788
No 10
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=2.93 E-value=1.4e+02 Score=5.59 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4699999870583---11499999861000003876404466768753
Q 000338 1158 IPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSFVRDILAYF 1202 (1639)
Q Consensus 1158 iDiVIhR~LE~~~---~k~letLL~~lg~LYkYHd~PvTFlY~tLhYy 1202 (1639)
+-+++.+.+|++. .++++-|=+-|+|+ -||| |-|=+|.+||-.
T Consensus 17 lKlYlit~~eq~r~YG~q~L~~Lr~eFk~~-Gy~P-~hsEiYraLHeL 62 (120)
T d1bm9a_ 17 LKLYMITMTEQERLYGLKLLEVLRSEFKEI-GFKP-NHTEVYRSLHEL 62 (120)
T ss_dssp HHHHHHHHHHTTCCBSTTHHHHHHHHHTTT-TCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
T ss_conf 876541103502112799999999987853-8899-778999999999
Done!