Your job contains 1 sequence.
>000341
MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLI
RGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRS
VTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGS
QAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAM
SPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHML
NWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQ
FIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG
NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVA
PCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSG
CIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILS
FHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSK
GDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVM
REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL
FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDH
RVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHV
LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCT
QLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVT
SNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDD
PHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPT
FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGH
LPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYN
SKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSL
PVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRST
PSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLA
DGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKH
LRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASE
IADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSS
IYAATHPKMVQNPS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000341
(1634 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028040 - symbol:AT1G23230 "AT1G23230" species... 5706 0. 2
DICTYBASE|DDB_G0270434 - symbol:med23 "putative mediator ... 214 1.2e-13 4
FB|FBgn0034795 - symbol:MED23 "Mediator complex subunit 2... 203 6.4e-10 2
ZFIN|ZDB-GENE-040724-82 - symbol:med23 "mediator complex ... 147 4.5e-07 3
UNIPROTKB|F1N8H3 - symbol:MED23 "Uncharacterized protein"... 156 3.9e-05 4
RGD|1307671 - symbol:Med23 "mediator complex subunit 23" ... 134 0.00034 3
UNIPROTKB|Q5EB59 - symbol:Med23 "Mediator of RNA polymera... 134 0.00034 3
UNIPROTKB|Q9ULK4 - symbol:MED23 "Mediator of RNA polymera... 143 0.00036 4
>TAIR|locus:2028040 [details] [associations]
symbol:AT1G23230 "AT1G23230" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006487 "protein N-linked
glycosylation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355
GO:GO:0006351 EMBL:AC005292 GO:GO:0016592 EMBL:AC002311
IPI:IPI00522318 IPI:IPI00542820 IPI:IPI00992463 PIR:F86366
RefSeq:NP_001185071.1 RefSeq:NP_173737.1 UniGene:At.41562
PRIDE:F4I4P3 EnsemblPlants:AT1G23230.1 GeneID:838932
KEGG:ath:AT1G23230 TAIR:At1g23230 eggNOG:NOG305557
InParanoid:Q9LR38 KO:K15166 OMA:DILAYFY ArrayExpress:F4I4P3
InterPro:IPR021629 Pfam:PF11573 Uniprot:F4I4P3
Length = 1615
Score = 5706 (2013.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 1113/1573 (70%), Positives = 1277/1573 (81%)
Query: 81 NKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRA 140
NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRA
Sbjct: 52 NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRA 111
Query: 141 EFILFALRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTS 200
EF+LFALR+LC I YINWDTF AE S QG QA A + +S S
Sbjct: 112 EFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----Q 166
Query: 201 SGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVN 260
S +P S NP S LPS HGIGSP+ S ++ SV ++ + ++ R +
Sbjct: 167 SVVP-----VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNS 217
Query: 261 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKS 320
+R A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++ G ++S GKS
Sbjct: 218 QRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKS 277
Query: 321 WRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHR 380
WR +K L EWL SCLDVIWLLV+E R+PFYELLR+GLQFIENIPDDEALFTLI+EIHR
Sbjct: 278 WRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHR 337
Query: 381 RRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGE 440
RRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+ EA +LR+SPITYPSVLGEPL+GE
Sbjct: 338 RRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGE 397
Query: 441 DLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD 499
DLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR Q GP PGAVFT D
Sbjct: 398 DLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSD 457
Query: 500 MISEAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSG 540
MI EA+IDRIVELLKLTNS + NCW +WL+FSD+FFFL+KSG
Sbjct: 458 MICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSG 517
Query: 541 CIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILS 600
C DFVDF+DKLV RL DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILS
Sbjct: 518 CTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILS 577
Query: 601 FHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSK 660
FHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR SK
Sbjct: 578 FHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SK 635
Query: 661 GXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVM 720
G S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG L PN+R+M+
Sbjct: 636 GERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMT 692
Query: 721 REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL 780
+EV PLPMSLL+GFS+NLCLKLALQME+++F QVV SIAMVETYTRL+L++PHS+FRS
Sbjct: 693 QEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSH 752
Query: 781 FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDH 840
FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDH
Sbjct: 753 FSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDH 812
Query: 841 RVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHV 900
R+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH+
Sbjct: 813 RIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHM 872
Query: 901 LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCT 960
+YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCT
Sbjct: 873 VYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCT 932
Query: 961 QLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVT 1020
QLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT
Sbjct: 933 QLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVT 992
Query: 1021 SNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXX 1080
+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF THE
Sbjct: 993 ANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDD 1052
Query: 1081 XHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPT 1140
HAL I ++LL +L R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPT
Sbjct: 1053 PHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPT 1112
Query: 1141 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGH 1200
FFDDIAARLLPVIPL++YRLIEN+AM+ AD +L +S FLAY+PLRF+FVRDILAYFYGH
Sbjct: 1113 FFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGH 1172
Query: 1201 LPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL--- 1257
LPGKL++R+L V DLSKIPFSESFPQ+IS + +CPPLDYFA+LLL LVNNVIP L
Sbjct: 1173 LPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSS 1232
Query: 1258 -NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETA 1313
N +S+SGS D +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETA
Sbjct: 1233 SNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETA 1292
Query: 1314 VIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDS 1373
VIEILSLP TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS
Sbjct: 1293 VIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDS 1352
Query: 1374 LGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRII 1433
+ ASRST + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+
Sbjct: 1353 MSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVT 1412
Query: 1434 KESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEG 1493
+E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+G
Sbjct: 1413 RETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDG 1472
Query: 1494 THVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPP 1553
T+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK
Sbjct: 1473 TNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTT 1532
Query: 1554 APVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHL 1613
APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HL
Sbjct: 1533 APVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHL 1592
Query: 1614 KPDVNSSIYAATH 1626
K + NSSIYAA H
Sbjct: 1593 KTNPNSSIYAAAH 1605
Score = 164 (62.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 34/54 (62%), Positives = 37/54 (68%)
Query: 4 NQSQRXXXXXXXXXXXXXXXYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPP 57
+QSQR YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPP
Sbjct: 2 DQSQRTVAATPSSSRS----YQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPP 51
>DICTYBASE|DDB_G0270434 [details] [associations]
symbol:med23 "putative mediator complex subunit 23"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0270434 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0030587 GO:GO:0005667
InterPro:IPR021629 Pfam:PF11573 RefSeq:XP_646801.1
EnsemblProtists:DDB0266935 GeneID:8617774 KEGG:ddi:DDB_G0270434
eggNOG:KOG1883 OMA:LYCPLER Uniprot:Q55BN0
Length = 1662
Score = 214 (80.4 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 107/458 (23%), Positives = 202/458 (44%)
Query: 500 MISEAVIDRIVELL-KLTNS------EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLV 552
+I+EA I + ++LL K N E N W +WL+FS+ F+FL ++G +D F+ L
Sbjct: 455 IITEATISKTMQLLNKYPNQIIENQIENNSWKEWLLFSEQFYFLCENGLVDLEQFIVTLS 514
Query: 553 S-RLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRK------ILSFHRED 605
R+ +GD ++ N V L+++ I ++ V + V + +LSF D
Sbjct: 515 EKRMNNGDP--IKDNMVVLLISKTIIIQDVKTLFKQHLQNVNSNHYGHLIPLVLSFVNND 572
Query: 606 RCTDPNNPQSILLDFISSCQNLRIWS--LNTSTREYLNNEQLQKG--KQIDEWWRQVSKG 661
P Q+I L F N + + ++ L+N Q +Q WW S+
Sbjct: 573 S-NYPIISQNISLYFFLMRINTNTENPEIIAHIKKLLDNFNFQFTLFQQYRNWWE--SEK 629
Query: 662 XXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTEL-FPGSNLPPNERLMVM 720
+ F ++ + ++ + S+ + FPG +V
Sbjct: 630 VKQKPEFFTTIQDITYFSIICNVIPTEGEMELIRFQSNGSDQSIQFPGVG---GIGTVVT 686
Query: 721 REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL 780
++ P+ +L SL KL + + +V S +E Y R + P + L
Sbjct: 687 GKIKPVSNLILLNLSLRCRRKLIQESVLLLLDKEVPISPGFLEDYCRTVHYTPGPVSPFL 746
Query: 781 FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLM---YDIT--KIISALKV 835
FS+ + + LA + V+E V++RLL + + + L+ DI K I +++
Sbjct: 747 FSYFKKFHR--LAPIHA---VIESVSHRLLKVLKSNKELAVLLRALQDIQTQKPIQNIQL 801
Query: 836 KRG-DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI 894
R D+ +L+ + +L ++LI ++ + SL G F NR + ++A +IK +GI
Sbjct: 802 SRSIDYLLLKASISLPVDLISAKEIWKSLDL---GL--FN---NRRLITSIARLIKLKGI 853
Query: 895 ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 932
D + + + +E ++ + +S+ TL +FP +L++
Sbjct: 854 QDFNRISDVPVFIENCFKSNPYCFSKSTLEFFPDILKN 891
Score = 83 (34.3 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 1139 PTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYP-LRFSFVRDILAYF 1197
P ++ + +RL+P++ +I+ + IE + D ++ + ++ YY + + ++D L Y+
Sbjct: 1151 PIYYSNSISRLMPIVEIIISKSIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYY 1210
Query: 1198 YGHLPGKL-------IVRILNVFDLSKIPFSESFPQHISSS 1231
Y KL +++LN D+ FS F Q + SS
Sbjct: 1211 YDSQLFKLNPELKLLFLKLLNQSDIDN-RFSNIFNQFLKSS 1250
Score = 61 (26.5 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 30/143 (20%), Positives = 58/143 (40%)
Query: 1141 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYF--- 1197
++D +L P + L+ +L+ +D+ R ++ FL + + AYF
Sbjct: 1210 YYDSQLFKLNPELKLLFLKLLNQSDIDN--RFSNIFNQFLKSSRIEDITMVGSTAYFNDL 1267
Query: 1198 YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLL------GLVN 1251
L + + NVFD +F I SNP+ + +LL + N
Sbjct: 1268 ISPLAEMMDLTNQNVFDTFSFKTENTFSS-IDISNPLELKLNNIILEILLLPLDSNWIAN 1326
Query: 1252 NVIPALNYNSKSGSTMDASLRAP 1274
++ LNY++++ + D + P
Sbjct: 1327 GLVSLLNYSNRNKNFSDRKIDPP 1349
Score = 45 (20.9 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 181 QAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETS 235
Q + VS T+ S +++ P +SN SS+ S G S + + T+
Sbjct: 198 QHIKMVSTTTTPTSTPTTSTTNTPQNSNTSSSSSTGTSSSTIGSSSSSTTTSTTN 252
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1280 MTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP 1321
+T+Q+ S + + + D +L L ++EIL LP
Sbjct: 1277 LTNQNVFDTFSFKTENTFSSIDISNPLELKLNNIILEILLLP 1318
Score = 37 (18.1 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 1007 LLRVLREFSP 1016
LLR+++EF P
Sbjct: 1643 LLRIVKEFKP 1652
>FB|FBgn0034795 [details] [associations]
symbol:MED23 "Mediator complex subunit 23" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0016592 "mediator complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] EMBL:AE013599 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG305557 KO:K15166
InterPro:IPR021629 Pfam:PF11573 GeneTree:ENSGT00390000010380
EMBL:BT029934 RefSeq:NP_611735.1 UniGene:Dm.2311 STRING:Q9W1X7
PaxDb:Q9W1X7 PRIDE:Q9W1X7 EnsemblMetazoa:FBtr0071903 GeneID:37639
KEGG:dme:Dmel_CG3695 CTD:9439 FlyBase:FBgn0034795 InParanoid:Q9W1X7
OrthoDB:EOG41JWSZ PhylomeDB:Q9W1X7 GenomeRNAi:37639 NextBio:804687
Uniprot:Q9W1X7
Length = 1439
Score = 203 (76.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 118/558 (21%), Positives = 233/558 (41%)
Query: 729 SLLTGFSLNLCLKLALQM-EDSIFGGQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQ 786
SL ++L QM + + GQV A+ A++ETY RL++ SL + L+Q
Sbjct: 534 SLTVHSKMSLIHSFVTQMLKQAQSKGQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQ 590
Query: 787 RNPSLLAKVGVTPL--VLEIVNYRL--LPLYRYQGKTKTLMYDITKIISALKVKRG---D 839
P++ L ++E+ +YRL +P + Y+ + +L++ ++ + K++ +
Sbjct: 591 LMPTVFKNHAWAMLHTLMEMFSYRLHHVPTH-YRVQLLSLLHSLSSVPQTNKMQLNLCFE 649
Query: 840 HRVLRLAENLCMNLILSQRD-FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADAD 898
LRL ++ Q +F+ K G ++ +E LNR+ ++ LA + G D +
Sbjct: 650 STALRLITSIGSAEFQPQFSRYFNDKSPGAVASNESEELNRVLILTLARSMHVHGGGD-E 708
Query: 899 HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQ 958
+ + L I+ + H+W +L FP L + + + QQ + V +
Sbjct: 709 MQGWCKDFLSNIIQHTPHSWPMHSLACFPPALNEYFT----QNNQPPENKQQLKKAVEEE 764
Query: 959 CTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEE 1018
S + + + +L + + +LC I+ + ENI+ ++L S
Sbjct: 765 YRTWTSMTNENDIIAHFLRPT--TNPLFLCLLFKIIWE--TENISPV-AYKILEGISARA 819
Query: 1019 VTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANIS-----FFVLTHEXXXXXXXXXX 1073
+++++ D L+ E+ +D + K I+ F V+T +
Sbjct: 820 LSTHLRKFCDYLV----AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRT 875
Query: 1074 XXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHL 1132
L I + LL EL+ RV+ +C + P +HW S K + +
Sbjct: 876 HEGNEAQVCFLIIQLLLLKASELRNRVQEFCKDNNP-DHWKQSNWQDKHLSFHQKYPEKF 934
Query: 1133 SWKER-----YPTFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYP 1184
+ E P +F ++ R LPV+ ++V+R IE + +L S ++
Sbjct: 935 ALDESASQIPLPVYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHD 994
Query: 1185 LRFSFVRDILAYFYGHL---PG---KLIVRILNVFDLSKIP---FSESFPQHISSSNPVM 1235
+++ + L Y+ L P KL+ I + F + P SE + ++ S + +
Sbjct: 995 RPITYLYNTLHYYERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLW 1054
Query: 1236 CPPLDYFATLLLGLVNNV 1253
P L Y+ +L+ L + +
Sbjct: 1055 TPELSYYMSLIRRLADTI 1072
Score = 39 (18.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 265 DNAISSLRQLCCKIILTG-LEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDE-----SDG 318
D + + R LC K+++ L+F + + F + +V D K G+ E D
Sbjct: 87 DAHVITARMLCDKVLMCEKLDFEHRTFW-IESFRLIKRVIVQVDYK--GVREIMKVCRDK 143
Query: 319 KSW---RLDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
W ++ + L + D++ + D + C +P Y
Sbjct: 144 AQWFPLNVNVTYMPQLLAVEDILRFIFDRNNCLLPAY 180
>ZFIN|ZDB-GENE-040724-82 [details] [associations]
symbol:med23 "mediator complex subunit 23"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] ZFIN:ZDB-GENE-040724-82 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 HOVERGEN:HBG051122
HOGENOM:HOG000043810 EMBL:BX072559 IPI:IPI00864380 UniGene:Dr.34224
Ensembl:ENSDART00000141595 Uniprot:B8A4G4
Length = 1387
Score = 147 (56.8 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 143/717 (19%), Positives = 269/717 (37%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 342 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 400
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 401 G-DFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDN 451
Query: 643 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 697
+LQ K E+ +Q + + S P V
Sbjct: 452 SKLQIPIPHSLKLHHEFLQQSLRNKSLPMTDYKIALLCNAYSTNSECFTLPMGVLVETIY 511
Query: 698 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA 757
+ + PG+N + + + +N L SL ++L +A ++ +A
Sbjct: 512 GNGSMRITLPGTNCMASGSVTPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSLA 569
Query: 758 -SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLY 813
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ +
Sbjct: 570 LAPALVETYSRLLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMFSYRM---H 624
Query: 814 RYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKRE 866
Q + + ++ + S V + + L L E+ + LI + Q F +
Sbjct: 625 HIQPHYRVQL--LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLND 682
Query: 867 GKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEK 921
K S E +E LNR ++ LA T +D + + + +L+ IM + H W+
Sbjct: 683 PKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASH 741
Query: 922 TLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFP 981
TL FP+ L+ + + ++ + V + + S + + + + P
Sbjct: 742 TLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSP 797
Query: 982 QHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRG 1041
+LC W ++ ++IN RVL + +++ T D L++ G
Sbjct: 798 P--LFLCL-LWKMLL-ETDHINQIGF-RVLERIGARALVAHVRTFADFLVYEFSTSAG-G 851
Query: 1042 HSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRV 1100
L + + + ++T + I + LL + + RV
Sbjct: 852 QQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRV 911
Query: 1101 KLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFDDI 1145
+ + PEHWL S K + K L ++ +Y P +F ++
Sbjct: 912 SDF-VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNPPIQLQSQYLPIYFGNV 970
Query: 1146 AARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1201
R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 971 CLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1027
Score = 75 (31.5 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 50/213 (23%), Positives = 91/213 (42%)
Query: 1407 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQD 1466
+ A GL++ LP + + L+ +I + L+ G LG + LLD T Q
Sbjct: 1157 MNAIGLVITALPEPYWIVLHDRIVSVISSAV-LSSGSDWLG-----YPFQLLDFTACHQS 1210
Query: 1467 NTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLLPR 1523
+ ++AL H+ + S++ Q L + + L+PI L V+ ++GP L R
Sbjct: 1211 YSEMHCSYVLALAHAVWHHSSIGQLSLI-PKFLSEVLKPIVKTEFQLLYVYHLVGPFLQR 1269
Query: 1524 LVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQA 1583
T + + M +++ A ++ + DFL+H+ Y G V
Sbjct: 1270 FQQERTRCMLEIGVAFYEMLQAVDQHSNHLAYMDP-----ICDFLYHI-KYMFTGDSV-- 1321
Query: 1584 SSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKP 1615
K + E ++ + R A LR + H+ S ++P
Sbjct: 1322 --KDQVERIICSLRPAMRLRLRFITHI-SKMEP 1351
Score = 43 (20.2 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 323 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
+ A+++ L + +V+ ++D + C +P Y
Sbjct: 163 VSSAVVQQLLAAREVVEYILDRNACLLPAY 192
>UNIPROTKB|F1N8H3 [details] [associations]
symbol:MED23 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
GO:GO:0006355 GO:GO:0005667 GO:GO:0016592 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 OMA:QHKQRCP
EMBL:AADN02049814 EMBL:AADN02049813 IPI:IPI00589763
Ensembl:ENSGALT00000004401 Uniprot:F1N8H3
Length = 1392
Score = 156 (60.0 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 145/719 (20%), Positives = 273/719 (37%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 352 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 410
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
+D V +L + E C D N PQS F +C IW ++ + + + +N
Sbjct: 411 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAHSDN 461
Query: 643 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 697
+LQ K E+ +Q + + S P V
Sbjct: 462 SKLQIPIPHSLKHHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGVLVETIY 521
Query: 698 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA 757
+ + PG+N + + + +N L SL ++L +A ++ VA
Sbjct: 522 GNGNMRISLPGTNCMASGSITPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSVA 579
Query: 758 -SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---L 810
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+
Sbjct: 580 LAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQ 637
Query: 811 PLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLK 864
P YR Q L+ + + A +R +++ E+ + LI + Q F
Sbjct: 638 PHYRVQ-----LLSHLHSL--AAVPQRNQNQLHLCVESTALRLITALGSSEVQPQFTRFL 690
Query: 865 REGKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWS 919
+ K S E +E LNR ++ LA T +D + + + +L+ IM+ + H W+
Sbjct: 691 SDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWA 749
Query: 920 EKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHS 979
TL FP+ L+ + + ++ + V + + S + + + +
Sbjct: 750 SHTLSCFPAPLQVFF----KQNNVPQESRFNLKKNVEEEYRKWKSMTNENEIITRFSVQG 805
Query: 980 FPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQ 1039
P +LC W ++ ++IN RVL + +++ T D L++
Sbjct: 806 SPP--LFLCL-LWKMLL-ETDHINQIGY-RVLERIGARALVAHVRTFADFLVYEFSTSAG 860
Query: 1040 RGHSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQ 1098
G L + + + ++T + I + LL + +
Sbjct: 861 -GQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRN 919
Query: 1099 RVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFD 1143
RV + + PEHWL + K + K L ++ +Y P +F
Sbjct: 920 RVSDF-VKENSPEHWLQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFG 978
Query: 1144 DIAARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1201
++ R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 979 NVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1037
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 55/220 (25%), Positives = 88/220 (40%)
Query: 1407 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 1464
+ A GL++ LP + + L+ +I SL VGY L D T
Sbjct: 1168 MNAIGLIITALPEPYWIVLHDHIVSVINSP--------SLTSETEWVGYPFQLFDFTACH 1219
Query: 1465 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 1521
Q + + +AL H+ + S++ Q L + + L PI L V+ ++GP L
Sbjct: 1220 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLIPIVKTEFQLLYVYHLVGPFL 1278
Query: 1522 PRLVNAHT--LFNKTLA---LLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG 1576
R T + +A +LLN D Y + P+ DFL+H+ Y
Sbjct: 1279 QRFQQERTRCMIEIGVAFYEMLLNA--DQYSSHLNYMDPI--------CDFLYHM-KYMF 1327
Query: 1577 QGGPVQASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKP 1615
G V K + E ++ R A LR + H+ S ++P
Sbjct: 1328 TGDSV----KDQVEKIICNLRPALKLRLRFITHI-SKMEP 1362
Score = 39 (18.8 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 323 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
+ A+++ L + +V+ +++ + C +P Y
Sbjct: 172 VSSAVVQQLLAAREVVAYILERNACLLPAY 201
Score = 39 (18.8 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 370 ALFTLILEIHRRRDMMAMHMQMLDQHLH-CP 399
AL +LE RDM+ + + QH CP
Sbjct: 289 ALLRYVLEQPYSRDMVCNMLGLNKQHKQRCP 319
>RGD|1307671 [details] [associations]
symbol:Med23 "mediator complex subunit 23" species:10116 "Rattus
norvegicus" [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0016592 "mediator complex"
evidence=IEA;ISO] RGD:1307671 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 eggNOG:NOG305557 InterPro:IPR021629 Pfam:PF11573
GeneTree:ENSGT00390000010380 HOVERGEN:HBG051122
HOGENOM:HOG000043810 EMBL:AABR03000314 EMBL:BC090022
IPI:IPI00368254 UniGene:Rn.6604 STRING:Q5EB59 PhosphoSite:Q5EB59
PRIDE:Q5EB59 Ensembl:ENSRNOT00000032424 InParanoid:Q5EB59
NextBio:660982 ArrayExpress:Q5EB59 Genevestigator:Q5EB59
Uniprot:Q5EB59
Length = 1367
Score = 134 (52.2 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 151/781 (19%), Positives = 301/781 (38%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
+D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDN 440
Query: 643 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 697
+LQ K E+ +Q + + S P ++ +
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPM-GALVETI 499
Query: 698 SSAGVTEL-FPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVV 756
G+ + PG++ + + + +N L SL ++L +A ++ V
Sbjct: 500 YGNGIMRVPLPGTSCLASASVTPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHTKSSV 557
Query: 757 A-SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPL 812
A + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ ++R+
Sbjct: 558 ALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRM--- 612
Query: 813 YRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLKRE 866
+ Q + + ++A+ + +++ E+ + LI + Q F +
Sbjct: 613 HHIQPHYRVQLLSHLHTLAAV-AQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLND 671
Query: 867 GKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEK 921
K S E +E LNR ++ LA T +D + + + +L+ IM + H W+
Sbjct: 672 PKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASH 730
Query: 922 TLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFP 981
TL FP+ L+ + + ++ + V + + S + + + + FP
Sbjct: 731 TLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFP 786
Query: 982 QHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRG 1041
+LC W ++ ++I+ +VL + +++ T D L++ G
Sbjct: 787 P--LFLCL-LWKMLL-ETDHISQIGY-KVLERIGARALVAHVRTFADFLVYEFSTSAG-G 840
Query: 1042 HSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRV 1100
L + + + ++T + I + LL + + RV
Sbjct: 841 QQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRV 900
Query: 1101 KLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK---ER----------Y-PTFFDDI 1145
+ + PEHWL S K + K L ++ E+ Y P +F ++
Sbjct: 901 SDF-VKENSPEHWLQSDWHTKHMSYHKKYPEKLYFEGLAEQVDPPVPIQSPYLPIYFGNV 959
Query: 1146 AARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFY------ 1198
R LPV ++++R +E S + +L ++ +++ + L Y+
Sbjct: 960 CLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMCLRNR 1019
Query: 1199 GHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS---NPVMCPPLDYFATLLLGLVNN 1252
HL KL+ I+ ++ S+++ +H ++ NP + P Y+ L+ LV+
Sbjct: 1020 DHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWV-PEDSYYCKLIGRLVDT 1078
Query: 1253 V 1253
+
Sbjct: 1079 M 1079
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 50/227 (22%), Positives = 88/227 (38%)
Query: 1407 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 1464
+ A GL++ LP + + L+ +I S SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLHDRIVSVISSS--------SLTSETEWVGYPFRLFDFTACH 1197
Query: 1465 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 1521
Q + + +AL H+ + S++ Q L + + L P+ L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPVVKTEFQLLYVYHLVGPFL 1256
Query: 1522 PRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV 1581
R T + + M + + + + DFL+H+ Y G V
Sbjct: 1257 QRFQQERTRCMIEIGVAFYDM-----LLNVDQCSTHLNYMDPICDFLYHM-KYMFTGDSV 1310
Query: 1582 QASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKPDVNSSIYAATHP 1627
K + E ++ + A LR + H+ S ++P V ++ P
Sbjct: 1311 ----KEQVEKIICNLKPALKLRLRFITHI-SKMEPAVPPQALSSGSP 1352
Score = 43 (20.2 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 339 WLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLH- 397
W L D R P LL E P AL +LE RDM+ + + QH
Sbjct: 241 WKL-DPATLRFPLKGLLPYDKDLFE--PQT-ALLRYVLEQPYSRDMVCNMLGLNKQHKQR 296
Query: 398 CP 399
CP
Sbjct: 297 CP 298
Score = 40 (19.1 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 323 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
+ A+++ L + +VI +++ + C +P Y
Sbjct: 152 VSSAVVQQLLAAREVIAYILERNACLLPAY 181
>UNIPROTKB|Q5EB59 [details] [associations]
symbol:Med23 "Mediator of RNA polymerase II transcription
subunit 23" species:10116 "Rattus norvegicus" [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] RGD:1307671
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 eggNOG:NOG305557
InterPro:IPR021629 Pfam:PF11573 GeneTree:ENSGT00390000010380
HOVERGEN:HBG051122 HOGENOM:HOG000043810 EMBL:AABR03000314
EMBL:BC090022 IPI:IPI00368254 UniGene:Rn.6604 STRING:Q5EB59
PhosphoSite:Q5EB59 PRIDE:Q5EB59 Ensembl:ENSRNOT00000032424
InParanoid:Q5EB59 NextBio:660982 ArrayExpress:Q5EB59
Genevestigator:Q5EB59 Uniprot:Q5EB59
Length = 1367
Score = 134 (52.2 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 151/781 (19%), Positives = 301/781 (38%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
+D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDN 440
Query: 643 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 697
+LQ K E+ +Q + + S P ++ +
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPM-GALVETI 499
Query: 698 SSAGVTEL-FPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVV 756
G+ + PG++ + + + +N L SL ++L +A ++ V
Sbjct: 500 YGNGIMRVPLPGTSCLASASVTPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHTKSSV 557
Query: 757 A-SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPL 812
A + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ ++R+
Sbjct: 558 ALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRM--- 612
Query: 813 YRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLKRE 866
+ Q + + ++A+ + +++ E+ + LI + Q F +
Sbjct: 613 HHIQPHYRVQLLSHLHTLAAV-AQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLND 671
Query: 867 GKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEK 921
K S E +E LNR ++ LA T +D + + + +L+ IM + H W+
Sbjct: 672 PKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASH 730
Query: 922 TLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFP 981
TL FP+ L+ + + ++ + V + + S + + + + FP
Sbjct: 731 TLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFP 786
Query: 982 QHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRG 1041
+LC W ++ ++I+ +VL + +++ T D L++ G
Sbjct: 787 P--LFLCL-LWKMLL-ETDHISQIGY-KVLERIGARALVAHVRTFADFLVYEFSTSAG-G 840
Query: 1042 HSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRV 1100
L + + + ++T + I + LL + + RV
Sbjct: 841 QQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRV 900
Query: 1101 KLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK---ER----------Y-PTFFDDI 1145
+ + PEHWL S K + K L ++ E+ Y P +F ++
Sbjct: 901 SDF-VKENSPEHWLQSDWHTKHMSYHKKYPEKLYFEGLAEQVDPPVPIQSPYLPIYFGNV 959
Query: 1146 AARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFY------ 1198
R LPV ++++R +E S + +L ++ +++ + L Y+
Sbjct: 960 CLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMCLRNR 1019
Query: 1199 GHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS---NPVMCPPLDYFATLLLGLVNN 1252
HL KL+ I+ ++ S+++ +H ++ NP + P Y+ L+ LV+
Sbjct: 1020 DHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWV-PEDSYYCKLIGRLVDT 1078
Query: 1253 V 1253
+
Sbjct: 1079 M 1079
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 50/227 (22%), Positives = 88/227 (38%)
Query: 1407 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 1464
+ A GL++ LP + + L+ +I S SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLHDRIVSVISSS--------SLTSETEWVGYPFRLFDFTACH 1197
Query: 1465 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 1521
Q + + +AL H+ + S++ Q L + + L P+ L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPVVKTEFQLLYVYHLVGPFL 1256
Query: 1522 PRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV 1581
R T + + M + + + + DFL+H+ Y G V
Sbjct: 1257 QRFQQERTRCMIEIGVAFYDM-----LLNVDQCSTHLNYMDPICDFLYHM-KYMFTGDSV 1310
Query: 1582 QASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKPDVNSSIYAATHP 1627
K + E ++ + A LR + H+ S ++P V ++ P
Sbjct: 1311 ----KEQVEKIICNLKPALKLRLRFITHI-SKMEPAVPPQALSSGSP 1352
Score = 43 (20.2 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 339 WLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLH- 397
W L D R P LL E P AL +LE RDM+ + + QH
Sbjct: 241 WKL-DPATLRFPLKGLLPYDKDLFE--PQT-ALLRYVLEQPYSRDMVCNMLGLNKQHKQR 296
Query: 398 CP 399
CP
Sbjct: 297 CP 298
Score = 40 (19.1 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 323 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
+ A+++ L + +VI +++ + C +P Y
Sbjct: 152 VSSAVVQQLLAAREVIAYILERNACLLPAY 181
>UNIPROTKB|Q9ULK4 [details] [associations]
symbol:MED23 "Mediator of RNA polymerase II transcription
subunit 23" species:9606 "Homo sapiens" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_111045 EMBL:CH471051
GO:GO:0006357 GO:GO:0005667 GO:GO:0003713 GO:GO:0006367
EMBL:AL121575 Orphanet:88616 GO:GO:0016592 eggNOG:NOG305557
KO:K15166 InterPro:IPR021629 Pfam:PF11573 CTD:9439 EMBL:AF105332
EMBL:AF135022 EMBL:AF104255 EMBL:AB033042 EMBL:AL136776
EMBL:BC060759 IPI:IPI00413272 IPI:IPI00472333 IPI:IPI00646226
IPI:IPI00844220 IPI:IPI00867654 RefSeq:NP_001257450.1
RefSeq:NP_001257451.1 RefSeq:NP_004821.2 RefSeq:NP_057063.2
UniGene:Hs.29679 ProteinModelPortal:Q9ULK4 DIP:DIP-31461N
IntAct:Q9ULK4 MINT:MINT-4719443 STRING:Q9ULK4 PhosphoSite:Q9ULK4
DMDM:28558074 PaxDb:Q9ULK4 PRIDE:Q9ULK4 DNASU:9439
Ensembl:ENST00000354577 Ensembl:ENST00000368053
Ensembl:ENST00000368060 Ensembl:ENST00000368068 GeneID:9439
KEGG:hsa:9439 UCSC:uc003qcq.3 UCSC:uc003qcs.1 UCSC:uc003qct.1
GeneCards:GC06M131895 HGNC:HGNC:2372 MIM:605042 MIM:614249
neXtProt:NX_Q9ULK4 PharmGKB:PA162395499 HOVERGEN:HBG051122
BindingDB:Q9ULK4 ChEMBL:CHEMBL4146 ChiTaRS:MED23 GenomeRNAi:9439
NextBio:35344 ArrayExpress:Q9ULK4 Bgee:Q9ULK4 Genevestigator:Q9ULK4
GermOnline:ENSG00000112282 Uniprot:Q9ULK4
Length = 1368
Score = 143 (55.4 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 144/723 (19%), Positives = 275/723 (38%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHRED-RCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQ 644
+D V +L +E D N PQS F +C IW ++ + + +N +
Sbjct: 390 -ADFLPVMKLFDLLYPEKEYIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDNSK 442
Query: 645 LQ----KGKQID-EWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSS 699
LQ ++ E+ +Q + + S P ++ +
Sbjct: 443 LQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPM-GALVETIYG 501
Query: 700 AGVTEL-FPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA- 757
G+ + PG+N + + + +N L SL ++L +A ++ VA
Sbjct: 502 NGIMRIPLPGTNCMASGSITPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSVAL 559
Query: 758 SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---LP 811
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ P
Sbjct: 560 APALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQP 617
Query: 812 LYRYQGKTKTLMYDITKIISALKVKRGD-H-----RVLRLAENLCMNLILSQRDFFSLKR 865
YR Q L+ + + + + + H LRL L + + Q F
Sbjct: 618 HYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDP 672
Query: 866 EGKGSTEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKT 922
+ S E +E LNR ++ LA T +D + + + +L+ IM+ + H W+ T
Sbjct: 673 KTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHT 731
Query: 923 LRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQ 982
L FP L+ + + ++ + V + + S S + + + P
Sbjct: 732 LSCFPGPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNENDIITHFSMQGSPP 787
Query: 983 HRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGH 1042
+LC W ++ ++IN RVL + +++ T D L++ G
Sbjct: 788 --LFLCL-LWKMLL-ETDHINQIGY-RVLERIGARALVAHVRTFADFLVYEFSTSAG-GQ 841
Query: 1043 SLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVK 1101
L + + + ++T + I + LL + + RV
Sbjct: 842 QLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVS 901
Query: 1102 LYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK---ER----------Y-PTFFDDIA 1146
+ + PEHWL + K + K L ++ E+ Y P +F ++
Sbjct: 902 DF-VKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFGNVC 960
Query: 1147 ARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKL 1205
R LPV ++++R +E S + +L ++ +++ + L Y+ HL +
Sbjct: 961 LRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHLRDRA 1020
Query: 1206 IVR 1208
++
Sbjct: 1021 FLK 1023
Score = 54 (24.1 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 33/128 (25%), Positives = 52/128 (40%)
Query: 1407 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 1464
+ A GL++ LP + + L+ RI+ SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLH---DRIVS-----VISSPSLTSETEWVGYPFRLFDFTACH 1197
Query: 1465 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 1521
Q + + +AL H+ + S++ Q L + + L PI L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPIVKTEFQLLYVYHLVGPFL 1256
Query: 1522 PRLVNAHT 1529
R T
Sbjct: 1257 QRFQQERT 1264
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 339 WLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLH- 397
W L D R P LL E P AL +LE RDM+ + + QH
Sbjct: 241 WKL-DPATLRFPLKGLLPYDKDLFE--PQT-ALLRYVLEQPYSRDMVCNMLGLNKQHKQR 296
Query: 398 CP 399
CP
Sbjct: 297 CP 298
Score = 41 (19.5 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 1600 ESLRPEVQHLLSHLKPDVNSSIYAATH 1626
+S++ +V+ ++ +LKP + + TH
Sbjct: 1308 DSVKEQVEKIICNLKPALKLRLRFITH 1334
Score = 40 (19.1 bits), Expect = 0.00069, Sum P(4) = 0.00069
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 323 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 352
+ A+++ L + +VI +++ + C +P Y
Sbjct: 152 VSSAVVQQLLAAREVIAYILERNACLLPAY 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1634 1561 0.00080 125 3 11 22 0.36 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 634 (67 KB)
Total size of DFA: 672 KB (2292 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 133.03u 0.12s 133.15t Elapsed: 00:00:06
Total cpu time: 133.04u 0.12s 133.16t Elapsed: 00:00:06
Start: Sat May 11 01:58:26 2013 End: Sat May 11 01:58:32 2013