BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000341
(1634 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I4P3|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis
thaliana GN=MED23 PE=1 SV=1
Length = 1615
Score = 2438 bits (6319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1198/1653 (72%), Positives = 1373/1653 (83%), Gaps = 79/1653 (4%)
Query: 4 NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGL 63
+QSQR+ A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPP
Sbjct: 2 DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPP------ 51
Query: 64 VACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTE 123
NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QLR++TE
Sbjct: 52 -----------------NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITE 94
Query: 124 SVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM 183
SVLIS+VVQC +H PRAEF+LFALR+LC I YINWDTFLPSLLSSVS+AE S QG QA
Sbjct: 95 SVLISLVVQCSNHAPRAEFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAA 154
Query: 184 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPV 243
A + +S S S S NP S LPS HGIGSP+ S ++ S
Sbjct: 155 AATAGSSATSS----------QSVVPVSVNPTSLLPSAHGIGSPSASEVK-------SVE 197
Query: 244 KSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHML 300
++ GQ + R + +R A++SLRQL CKIIL G+E SLKPVTHA+IF +M+
Sbjct: 198 NGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMM 257
Query: 301 NWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQ 360
NWLV WD++ G ++S GKSWR +K L EWL SCLDVIWLLV+E R+PFYELLR+GLQ
Sbjct: 258 NWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQ 317
Query: 361 FIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG 420
FIENIPDDEALFTLI+EIHRRRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+ EA
Sbjct: 318 FIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVP 377
Query: 421 NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVA 480
+LR+SPITYPSVLGEPL+GEDLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VA
Sbjct: 378 HLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVA 437
Query: 481 PCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNS-------------------EV 520
PCYR Q GP PGAVFT DMI EA+IDRIVELLKLTNS +
Sbjct: 438 PCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADA 497
Query: 521 NCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVEL 580
NCW +WL+FSD+FFFL+KSGC DFVDF+DKLV RL DNHILRTNHVTWLLAQIIRVEL
Sbjct: 498 NCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVEL 557
Query: 581 VMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYL 640
VM ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YL
Sbjct: 558 VMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYL 617
Query: 641 NNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSA 700
NNEQL KGKQIDEWWR SKG+RMMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSA
Sbjct: 618 NNEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSA 675
Query: 701 GVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIA 760
G+ EL PG L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F QVV SIA
Sbjct: 676 GMAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIA 732
Query: 761 MVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTK 820
MVETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+K
Sbjct: 733 MVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSK 792
Query: 821 TLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRI 880
TLMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRI
Sbjct: 793 TLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRI 852
Query: 881 TVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDK 940
T++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DK
Sbjct: 853 TIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDK 912
Query: 941 RGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPE 1000
RGL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH E
Sbjct: 913 RGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAE 972
Query: 1001 NINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVL 1060
NINS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF
Sbjct: 973 NINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFW 1032
Query: 1061 THELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFK 1120
THE+LPLDI LLALIDRDDDPHAL I ++LL +L R+K YC NRG PEHWL + +FK
Sbjct: 1033 THEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFK 1092
Query: 1121 RVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFL 1180
R ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L +S FL
Sbjct: 1093 RNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFL 1152
Query: 1181 AYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLD 1240
AY+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS + +CPPLD
Sbjct: 1153 AYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLD 1212
Query: 1241 YFATLLLGLVNNVIPALNYNSKS-------GSTMDASLRAPHNKSPMTSQSGPSNVSEGR 1293
YFA+LLL LVNNVIP L+ +S +++S R PH K+P TSQ GP+N SEG+
Sbjct: 1213 YFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQ 1272
Query: 1294 KEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGAS 1353
K FYQ QDPGTYTQLVLETAVIEILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+
Sbjct: 1273 KAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAA 1332
Query: 1354 NSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLL 1413
N VGQGSVLPTSPSGGSTDS+ ASRST + GINT+SFVSRSGYTCQQLSCLLIQACGLL
Sbjct: 1333 NGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLL 1392
Query: 1414 LAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 1473
LAQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIG
Sbjct: 1393 LAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIG 1452
Query: 1474 NIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNK 1533
NIVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNK
Sbjct: 1453 NIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNK 1512
Query: 1534 TLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLV 1593
TL LLL+ + DV+GK APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L
Sbjct: 1513 TLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILA 1572
Query: 1594 LTGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1626
L GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1573 LIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605
>sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila
melanogaster GN=MED23 PE=1 SV=1
Length = 1439
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 144/677 (21%), Positives = 274/677 (40%), Gaps = 113/677 (16%)
Query: 753 GQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLLAKVGVTPL--VLEIVNYRL 809
GQV A+ A++ETY RL++ SL + L+Q P++ L ++E+ +YRL
Sbjct: 559 GQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQLMPTVFKNHAWAMLHTLMEMFSYRL 615
Query: 810 LPL---YRYQGKTKTLMYDITKIISALKVKRG-DHRVLRLAENLCMNLILSQ-RDFFSLK 864
+ YR Q + + +++ + LRL ++ Q +F+ K
Sbjct: 616 HHVPTHYRVQLLSLLHSLSSVPQTNKMQLNLCFESTALRLITSIGSAEFQPQFSRYFNDK 675
Query: 865 REGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLR 924
G ++ +E LNR+ ++ LA + G D + + + L I+ + H+W +L
Sbjct: 676 SPGAVASNESEELNRVLILTLARSMHVHGGGD-EMQGWCKDFLSNIIQHTPHSWPMHSLA 734
Query: 925 YFPSLLRDALIGR----IDKRGL--TIQAWQQAETTVINQ---CTQLLSPSADPTYVKTY 975
FP L + +K+ L ++ + T++ N+ L P+ +P +
Sbjct: 735 CFPPALNEYFTQNNQPPENKQQLKKAVEEEYRTWTSMTNENDIIAHFLRPTTNPLF---- 790
Query: 976 LSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIH 1035
LC I+ + ENI S ++L S +++++ D L+
Sbjct: 791 -----------LCLLFKIIWET--ENI-SPVAYKILEGISARALSTHLRKFCDYLV---- 832
Query: 1036 VELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA-----LRIVITL 1090
E+ +D + K I+ + ++ +D ++L L R + + L I + L
Sbjct: 833 AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRTHEGNEAQVCFLIIQLLL 892
Query: 1091 LDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY-----------P 1139
L EL+ RV+ +C + P +HW S K L H + E++ P
Sbjct: 893 LKASELRNRVQEFCKDNNP-DHWKQSNW-----QDKHLSFHQKYPEKFALDESASQIPLP 946
Query: 1140 TFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAY 1196
+F ++ R LPV+ ++V+R IE + +L S ++ +++ + L Y
Sbjct: 947 VYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHDRPITYLYNTLHY 1006
Query: 1197 FYG------HLPGKLIVRILNVFDLSKIP---FSESFPQHISSSNPVMCPPLDYFATLLL 1247
+ L KL+ I + F + P SE + ++ S + + P L Y+ +L+
Sbjct: 1007 YERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLWTPELSYYMSLIR 1066
Query: 1248 GLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQ 1307
L + + SG + S N+ P + P++
Sbjct: 1067 RLADTI---------SGKNVFYSTDWRFNEFP----NAPTH------------------- 1094
Query: 1308 LVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQG-SVLPTSP 1366
L +E+L LPV+ + S+L+ ++V+ + Q Y N+VG + LP
Sbjct: 1095 -ALYVTCVELLGLPVAPPLVASNLIDVIVSGYAVIPQKDIHSY--INAVGIVLAALPEPY 1151
Query: 1367 SGGSTDSLGASRSTPSV 1383
G D L +TP++
Sbjct: 1152 WSGIYDRLQDMLNTPNM 1168
>sp|Q55BN0|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23
OS=Dictyostelium discoideum GN=med23 PE=3 SV=1
Length = 1662
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/467 (22%), Positives = 202/467 (43%), Gaps = 60/467 (12%)
Query: 500 MISEAVIDRIVELL-KLTNS------EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLV 552
+I+EA I + ++LL K N E N W +WL+FS+ F+FL ++G +D F+ L
Sbjct: 455 IITEATISKTMQLLNKYPNQIIENQIENNSWKEWLLFSEQFYFLCENGLVDLEQFIVTLS 514
Query: 553 -SRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRK------ILSFHRED 605
R+ +GD ++ N V L+++ I ++ V + V + +LSF D
Sbjct: 515 EKRMNNGDP--IKDNMVVLLISKTIIIQDVKTLFKQHLQNVNSNHYGHLIPLVLSFVNND 572
Query: 606 RCTDPNNPQSILLDFISSCQNLRIWSLNTST---------REYLNNEQLQKG--KQIDEW 654
P Q+I L F + +NT+T ++ L+N Q +Q W
Sbjct: 573 -SNYPIISQNISLYFF-------LMRINTNTENPEIIAHIKKLLDNFNFQFTLFQQYRNW 624
Query: 655 WRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTEL-FPGSNLPP 713
W + + + D + F ++ + ++ + S+ + FPG
Sbjct: 625 WESEKVKQKPEFFTTIQD--ITYFSIICNVIPTEGEMELIRFQSNGSDQSIQFPGVG--- 679
Query: 714 NERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAP 773
+V ++ P+ +L SL KL + + +V S +E Y R + P
Sbjct: 680 GIGTVVTGKIKPVSNLILLNLSLRCRRKLIQESVLLLLDKEVPISPGFLEDYCRTVHYTP 739
Query: 774 HSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKI---- 829
+ LFS+ + ++ V+E V++RLL + + + L+ + I
Sbjct: 740 GPVSPFLFSYFKK-----FHRLAPIHAVIESVSHRLLKVLKSNKELAVLLRALQDIQTQK 794
Query: 830 -ISALKVKRG-DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAI 887
I +++ R D+ +L+ + +L ++LI + +E S + NR + ++A
Sbjct: 795 PIQNIQLSRSIDYLLLKASISLPVDLISA--------KEIWKSLDLGLFNNRRLITSIAR 846
Query: 888 IIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDAL 934
+IK +GI D + + + +E ++ + +S+ TL +FP +L++
Sbjct: 847 LIKLKGIQDFNRISDVPVFIENCFKSNPYCFSKSTLEFFPDILKNEF 893
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 30/172 (17%)
Query: 1059 VLTHELLPLDILLLALIDRDDDPHALRIVIT-LLDRQELQQRVKLYCMNRGPPEHWLYSG 1117
+ T+++L L+ +LLAL+DRDD P I+ T L E+Q R++ + P + S
Sbjct: 1052 IFTYKILTLNSVLLALLDRDDHPSMPTILDTFLFSSAEIQNRLQFFS---TYPSDFFISQ 1108
Query: 1118 LFKRVELQKALGNHLSWKERY-----------------------PTFFDDIAARLLPVIP 1154
F+ + + + R+ P ++ + +RL+P++
Sbjct: 1109 SFRNDD--NYFIKNCEFNNRFNDLIPTVIDPNTLIEQSTQDTILPIYYSNSISRLMPIVE 1166
Query: 1155 LIVYRLIENDAMDSADRVLATYSSFLAYY-PLRFSFVRDILAYFYGHLPGKL 1205
+I+ + IE + D ++ + ++ YY + + ++D L Y+Y KL
Sbjct: 1167 IIISKSIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYYYDSQLFKL 1218
>sp|Q16HH9|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes
aegypti GN=MED23 PE=3 SV=1
Length = 1409
Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 141/680 (20%), Positives = 266/680 (39%), Gaps = 124/680 (18%)
Query: 760 AMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLL--AKVGVTPLVLEIVNYRL---LPLY 813
A+VETY+RL++ SL F L Q P + A G+ +LE+ +YR+ P Y
Sbjct: 577 ALVETYSRLLVYTEIESLGIKGF--LGQLLPQVFKSAAWGILYTLLEMFSYRMHHIQPHY 634
Query: 814 RYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREG 867
R Q L+ + + S + + LRL L + +Q + +++
Sbjct: 635 RVQ-----LLSHLHSLASVPHTNQMQLHSCVESTALRLITGLGSVEVQAQMSRYVTEQKA 689
Query: 868 KGS--TEFTETLNRITVIALAIIIKTRGIA-DADHVLYLQTMLEQIMATSQHTWSEKTLR 924
G+ + +E LNR ++ LA ++ G D + + +L IM + HTWS+ TL+
Sbjct: 690 PGNIVSAESEELNRALILTLARSMQITGTGNDPQSTTWCKELLNSIMQNTPHTWSQHTLQ 749
Query: 925 YFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVK-TYLSHSFPQH 983
FP +L D ++ + V + QLL S D Y T +S+
Sbjct: 750 CFPPVLNDLVV----------------QHNVPKENKQLLKKSVDEEYRNWTSMSNENDII 793
Query: 984 RQYLCAGA--------WILMQGHPE-NINSANLLRVLREFSPEEVTSNIYTMVDVLLHHI 1034
+ AG +L + E + S ++L +++++ + D L+ +
Sbjct: 794 GHFGTAGTPGTPPLFLCLLFKMIVETDTISPVAYKILERIGARALSAHLRKLCDYLVFEV 853
Query: 1035 HVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALR-----IVIT 1089
H + K I+ + + ++ +D L+L L R + + + I +
Sbjct: 854 SNSGDGAH-----VNKCVDTINDMIWKYNIITIDRLVLCLSLRTLEGNEAQVSFCIIQLL 908
Query: 1090 LLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY----------- 1138
LL E + R++ + ++ PEHW + +R L H + E++
Sbjct: 909 LLKTSEFRNRLQEF-VSINSPEHWKQNNWHER-----HLAFHQKFPEKFTPDESVSHPSL 962
Query: 1139 PTFFDDIAARLLPVIPLIVYRLIENDAMDSA--DRVLATYSSFLAYYPLRFSFVRDILAY 1196
P +F ++ R LPV+ + ++R +E A S D +L ++ +++ + L Y
Sbjct: 963 PVYFGNVCLRFLPVLDITIHRYLEVPAAMSKTLDVLLDHLGPLYKFHDRPITYLYNTLHY 1022
Query: 1197 F----------YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL 1246
+ L G +I + +V +E + ++S + +
Sbjct: 1023 YERMLRDRPQLKKRLVGTVIGSLKDVRP-DNWAVTEQYQSYMSKKDDAV----------- 1070
Query: 1247 LGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRK-EFYQNQDPGTY 1305
N +P LNY M ++ +N+ G F + +P +
Sbjct: 1071 -----NWMPDLNYYIYLVRRMQDTIDG-------------TNIFPGTDWRFNEFPNPPAH 1112
Query: 1306 TQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQ-GSVLPT 1364
L +E+L LPV + +SL+ +VV P + S + N++G + LP
Sbjct: 1113 A---LYVTCVELLGLPVGPQGVANSLIDVVVKGYPVI--PSQSVHNWINTIGLIMAALPE 1167
Query: 1365 SPSGGSTDSLGASRSTPSVS 1384
S G + L S P ++
Sbjct: 1168 SYWGVIYERLREVISCPQMT 1187
>sp|Q5RIW8|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio
GN=med23 PE=2 SV=2
Length = 1376
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 182/882 (20%), Positives = 340/882 (38%), Gaps = 144/882 (16%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 390 G-DFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDN 440
Query: 643 EQLQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQ----PACETV 693
+LQ K E+ +Q + + M D + + T ++ P V
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSL----PMTDYKIALLCNAYSTNSECFTLPMGVLV 496
Query: 694 MNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG- 752
+ + PG+N M V PLPM+LL +++ + L + +
Sbjct: 497 ETIYGNGSMRITLPGTNC------MASGSVTPLPMNLLDSLTVHAKMSLIHSIATRVIKL 550
Query: 753 ----GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIV 805
+ + A+VETY+RL++ + SL + ++Q P++ G+ +LE+
Sbjct: 551 AHAKSSLALAPALVETYSRLLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMF 608
Query: 806 NYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS----- 856
+YR+ P YR Q ++ + S V + + L L E+ + LI +
Sbjct: 609 SYRMHHIQPHYRVQL--------LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSE 660
Query: 857 -QRDFFSLKREGKG--STEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQI 910
Q F + K S E +E LNR ++ LA +D+ + + +L+ I
Sbjct: 661 VQPQFTRFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTI 719
Query: 911 MATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 970
M + H W+ TL FP+ L+ + + ++ + V + + S + +
Sbjct: 720 MNFTPHNWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNEND 775
Query: 971 YVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVL 1030
+ + P +LC +L++ ++IN RVL + +++ T D L
Sbjct: 776 IITHFSMQGSPP--LFLCLLWKMLLET--DHINQIG-FRVLERIGARALVAHVRTFADFL 830
Query: 1031 LHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV--- 1087
++ G L K ++ V + ++ LD L+L L R + + ++
Sbjct: 831 VYEFSTS-AGGQQLN----KCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFI 885
Query: 1088 --ITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK--------- 1135
+ LL + + RV + + PEHWL S K + K L ++
Sbjct: 886 IQLLLLKPNDFRNRVSDF-VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNPP 944
Query: 1136 -----ERYPTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFSF 1189
+ P +F ++ R LPV ++++R +E S + +L ++ ++
Sbjct: 945 IQLQSQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTY 1004
Query: 1190 VRDILAYFYGH------LPGKLIVRILNVFDLSKIP---FSESFPQ--HISSSNPVMCPP 1238
+ + L Y+ H L KL+ I++ ++ P SE++ + + + V P
Sbjct: 1005 LYNTLHYYERHLRDRTNLKRKLVHAIMSSLKDNRTPGWCLSETYLKCGMNAREDNVWIPD 1064
Query: 1239 LDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQ 1298
Y+ L+ LV+ + KSP GP + R F +
Sbjct: 1065 DTYYCKLIGRLVDTMA---------------------GKSP-----GPFPNCDWR--FNE 1096
Query: 1299 NQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1340
+P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1097 FPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q5EB59|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus
norvegicus GN=Med23 PE=2 SV=2
Length = 1367
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 179/890 (20%), Positives = 342/890 (38%), Gaps = 160/890 (17%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
+D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDN 440
Query: 643 EQLQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWL 697
+LQ K E+ +Q + + M+D + + T ++ C T L
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSL----QMNDYKIALLCNAYSTNSE--CFT----L 490
Query: 698 SSAGVTELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG- 752
+ E G+ + P + V PLPM+LL +++ + L + +
Sbjct: 491 PMGALVETIYGNGIMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKL 550
Query: 753 ----GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIV 805
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+
Sbjct: 551 AHTKSSVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMF 608
Query: 806 NYRL---LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILS 856
++R+ P YR Q L+ + + + + + + LRL L + +
Sbjct: 609 SHRMHHIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQP 663
Query: 857 QRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMAT 913
Q F + S E +E LNR ++ LA +D+ + + +L+ IM
Sbjct: 664 QFTRFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTF 722
Query: 914 SQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVK 973
+ H W+ TL FP+ L+ + + ++ + V + + S + + +
Sbjct: 723 TPHNWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIIT 778
Query: 974 TYLSHSFPQHRQYLCAGAWILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLH 1032
+ FP +LC +L++ H I +VL + +++ T D L++
Sbjct: 779 QFSMQGFPP--LFLCLLWKMLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVY 832
Query: 1033 HIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV----- 1087
G L K ++ V + ++ LD L+L L R + + ++
Sbjct: 833 EFSTS-AGGQQLN----KCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQ 887
Query: 1088 ITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY--------- 1138
+ LL + + RV + + PEHWL S + H+S+ ++Y
Sbjct: 888 LLLLKPNDFRNRVSDF-VKENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGL 937
Query: 1139 ---------------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAY 1182
P +F ++ R LPV ++++R +E S + +L +
Sbjct: 938 AEQVDPPVPIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKF 997
Query: 1183 YPLRFSFVRDILAYF------YGHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS-- 1231
+ +++ + L Y+ HL KL+ I+ ++ S+++ +H ++
Sbjct: 998 HDRPVTYLYNTLHYYEMCLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNARE 1057
Query: 1232 -NPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVS 1290
NP + P Y+ L+ LV+ + KSP GP
Sbjct: 1058 DNPWV-PEDSYYCKLIGRLVDTMA---------------------GKSP-----GPFPNC 1090
Query: 1291 EGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1340
+ R F + +P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1091 DWR--FNEFPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo
sapiens GN=MED23 PE=1 SV=2
Length = 1368
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 175/875 (20%), Positives = 340/875 (38%), Gaps = 130/875 (14%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHRED-RCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQ 644
+D V +L +E D N PQS F +C IW ++ + + +N +
Sbjct: 390 -ADFLPVMKLFDLLYPEKEYIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDNSK 442
Query: 645 LQ----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSA 700
LQ ++ + Q S ++ + M+D + + T ++ C T L
Sbjct: 443 LQIPIPHSLRLHHEFLQQSLRNKSL---QMNDYKIALLCNAYSTNSE--CFT----LPMG 493
Query: 701 GVTELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG---- 752
+ E G+ + P M + PLPM+LL +++ + L + +
Sbjct: 494 ALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHA 553
Query: 753 -GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYR 808
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR
Sbjct: 554 KSSVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYR 611
Query: 809 L---LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRD 859
+ P YR Q L+ + + + + + + LRL L + + Q
Sbjct: 612 MHHIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFT 666
Query: 860 FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQH 916
F + S E +E LNR ++ LA +D+ + + +L+ IM+ + H
Sbjct: 667 RFLSDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPH 725
Query: 917 TWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYL 976
W+ TL FP L+ + + ++ + V + + S S + + +
Sbjct: 726 NWASHTLSCFPGPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNENDIITHFS 781
Query: 977 SHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHV 1036
P +LC +L++ ++IN RVL + +++ T D L++
Sbjct: 782 MQGSPP--LFLCLLWKMLLET--DHINQIG-YRVLERIGARALVAHVRTFADFLVYEFST 836
Query: 1037 ELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLL 1091
G L K ++ V + ++ LD L+L L R + + ++ + LL
Sbjct: 837 S-AGGQQLN----KCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLL 891
Query: 1092 DRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY------------- 1138
+ + RV + + PEHWL + + H+++ ++Y
Sbjct: 892 KPNDFRNRVSDF-VKENSPEHWLQNDWHTK---------HMNYHKKYPEKLYFEGLAEQV 941
Query: 1139 -----------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLR 1186
P +F ++ R LPV ++++R +E S + +L ++
Sbjct: 942 DPPVQIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRP 1001
Query: 1187 FSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL 1246
+++ + L Y+ HL + ++ V + ++ PQ S+ + ++
Sbjct: 1002 VTYLYNTLHYYEMHLRDRAFLKRKLVHAIIG-SLKDNRPQGWCLSDTYLKCAMNAREE-- 1058
Query: 1247 LGLVNNVIPALNYNSK-SGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTY 1305
N +P Y + G +D KSP GP + R F + +P +
Sbjct: 1059 ----NPWVPDDTYYCRLIGRLVDTMA----GKSP-----GPFPNCDWR--FNEFPNPAAH 1103
Query: 1306 TQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1340
L +E+++L VS ++ ++L+ +V+ QP
Sbjct: 1104 A---LHVTCVELMALAVSGKEVGNALLNVVLKSQP 1135
>sp|Q80YQ2|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus
musculus GN=Med23 PE=1 SV=2
Length = 1367
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 179/889 (20%), Positives = 339/889 (38%), Gaps = 158/889 (17%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIW-SLNTSTREYLN 641
+D V +L + E C D N PQS F +C IW LN + +
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IWIHLNRKAQNGDS 441
Query: 642 NEQL---QKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLS 698
Q+ K E+ +Q + + M+D + + T ++ C T L
Sbjct: 442 TLQIPIPHSLKLHHEFLQQSLRNKSL----QMNDYKIALLCNAYSTNSE--CFT----LP 491
Query: 699 SAGVTELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-- 752
+ E G+ + P + V PLPM+LL +++ + L + +
Sbjct: 492 MGALVETIYGNGIMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLA 551
Query: 753 ---GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVN 806
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +
Sbjct: 552 HTKSSVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFS 609
Query: 807 YRL---LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQ 857
+R+ P YR Q L+ + + + + + + LRL L + + Q
Sbjct: 610 HRMHHIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQ 664
Query: 858 RDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATS 914
F + S E +E LNR ++ LA +D+ + + +L+ IM +
Sbjct: 665 FTRFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFT 723
Query: 915 QHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKT 974
H W+ TL FP+ L+ + + ++ + V + + S + + +
Sbjct: 724 PHNWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQ 779
Query: 975 YLSHSFPQHRQYLCAGAWILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHH 1033
+ FP +LC +L++ H I +VL + +++ T D L++
Sbjct: 780 FSVQGFPP--LFLCLLWKMLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVYE 833
Query: 1034 IHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV-----I 1088
G L K ++ V + ++ LD L+L L R + + ++ +
Sbjct: 834 FSTS-AGGQQLN----KCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQL 888
Query: 1089 TLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY---------- 1138
LL + + RV + + PEHWL S + H+S+ ++Y
Sbjct: 889 LLLKPNDFRNRVSDF-VKENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGLA 938
Query: 1139 --------------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYY 1183
P +F ++ R LPV ++++R +E S + +L ++
Sbjct: 939 EQVDPPVPIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFH 998
Query: 1184 PLRFSFVRDILAYF------YGHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS--- 1231
+++ + L Y+ HL KL+ I+ ++ S+++ +H ++
Sbjct: 999 DRPVTYLYNTLHYYEMCLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNARED 1058
Query: 1232 NPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSE 1291
NP + P Y+ L+ LV+ + KSP GP +
Sbjct: 1059 NPWV-PEDSYYCKLIGRLVDTMA---------------------GKSP-----GPFPNCD 1091
Query: 1292 GRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1340
R F + +P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1092 WR--FNEFPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q6P423|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus
laevis GN=med23 PE=2 SV=1
Length = 1369
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 145/692 (20%), Positives = 266/692 (38%), Gaps = 101/692 (14%)
Query: 526 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 585
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 586 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 642
+D V +L + E C D PQS F +C IW ++ + + +N
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDITKPQSTH-SFAMTC----IW-IHLNRKAQNDN 440
Query: 643 EQLQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQ----PACETV 693
+LQ K E+ +Q + + M D + + T ++ P V
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSL----QMTDYKIALLCNAYSTNSECFTLPMGVLV 496
Query: 694 MNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGG 753
+ V PGSN M + PLPM+LL +++ + L + +
Sbjct: 497 ETIYGNGNVNIPLPGSNC------MASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKM 550
Query: 754 QVVASI-----AMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIV 805
S A+VETY+RL++ + SL + ++Q P++ G+ +LE+
Sbjct: 551 AQAKSTFALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMF 608
Query: 806 NYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS----- 856
+YR+ P YR Q ++ + S V + + L L E+ + LI +
Sbjct: 609 SYRMHHIQPHYRVQL--------LSHLHSLAGVPQTNQNQLHLCVESTALRLITALGSSE 660
Query: 857 -QRDFFSLKREGKG--STEFTETLNRITVIALAIIIKTRGIADADHVL---YLQTMLEQI 910
Q F + K S E +E LNR ++ +A + + + +L+ I
Sbjct: 661 VQPQFTRFLSDPKTVLSAE-SEELNRALILTIARATHVTDFFTGSESIQGTWCKDILQTI 719
Query: 911 MATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 970
++ + H W+ TL FP+ L+ + + ++ + V + + S + +
Sbjct: 720 ISFTPHNWALHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNEND 775
Query: 971 YVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVL 1030
+ + P +LC +L++ + IN RVL + +++ T D L
Sbjct: 776 IITHFSLQGSPP--LFLCLLWKMLLET--DQINQIG-YRVLERIGARALVAHVRTFADFL 830
Query: 1031 LHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV--- 1087
++ G L K ++ V + ++ LD L+L L R + + ++
Sbjct: 831 VYEFSTS-AGGQQLN----KCIEMLNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFI 885
Query: 1088 --ITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK--------- 1135
+ LL + + RV + + PEHWL + K + K L ++
Sbjct: 886 IQLLLLKPNDFRNRVSDF-VKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVNPP 944
Query: 1136 -----ERYPTFFDDIAARLLPVIPLIVYRLIE 1162
+ P +F ++ R LPV ++++R +E
Sbjct: 945 VQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLE 976
>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3
Length = 1589
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 28/307 (9%)
Query: 916 HTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTY 975
+ W EK+ +FP + I + D + L + TT ++ ++ + YV Y
Sbjct: 779 YGWPEKSTTFFPKWALEE-IKKTDVKKLAPNYAEILSTT--DEAFRMNTLLTGGQYVIRY 835
Query: 976 LSHSFPQHRQYLCAGAWILMQ--GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHH 1033
P Y C A I Q PE ++ +V+ + SP+++ M + L+
Sbjct: 836 ADD--PNPITYHCMLAVIFKQLCSKPEQDLTSEYYQVMEKKSPKDIV----VMGNYLVDF 889
Query: 1034 IHVELQRGHSLQDLLFKACANISFFVLTH-ELLPLDILLLALI---DRDDDPH-ALRIVI 1088
I +++ + FK A + + H + D LL+LI D+D ++I
Sbjct: 890 IIADVKNNQDCNEQTFKTIAKTAALMCFHFNIHRADRFLLSLIMHPSTDEDAQICIQIAN 949
Query: 1089 TLLDRQELQQRVKLYCMNRGP-----PEHWL-----YSGLFKRVELQKAL--GNHLSWKE 1136
L + Q+R+K + N P P ++ Y F E + + +
Sbjct: 950 EFLLTPKFQERIKWFYENDVPRKEKDPYEYIKAIVKYHDAFPEFEACQLVPKNDDTGTNV 1009
Query: 1137 RYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAY 1196
PT++ + RLLP++ VY +E ++ +L S F Y+P+ F+ +L
Sbjct: 1010 HMPTYYGCLIERLLPILDQYVYVALEQQGYKMSNALLQLVSMFYRYHPMPIHFMYSVLFV 1069
Query: 1197 FYGHLPG 1203
+G + G
Sbjct: 1070 SHGKMAG 1076
>sp|Q5HT53|PPK_CAMJR Polyphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ppk
PE=3 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 905 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 962
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 963 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 1017
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 1018 EVTSNIYTMVDVLLHHIHVELQRGHSL 1044
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A1W0X7|PPK_CAMJJ Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=ppk PE=3 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 905 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 962
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 963 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 1017
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 1018 EVTSNIYTMVDVLLHHIHVELQRGHSL 1044
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q9PMU0|PPK_CAMJE Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=ppk PE=3 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 905 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 962
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 963 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 1017
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 1018 EVTSNIYTMVDVLLHHIHVELQRGHSL 1044
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A8FN39|PPK_CAMJ8 Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=ppk PE=3 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 905 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 962
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 963 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 1017
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 1018 EVTSNIYTMVDVLLHHIHVELQRGHSL 1044
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis elegans GN=sur-2 PE=1 SV=1
Length = 1587
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 116/302 (38%), Gaps = 24/302 (7%)
Query: 918 WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT-YVKTYL 976
W EK+ YFP DA+ K T A E + T + S P +V Y
Sbjct: 774 WPEKSTSYFPKWALDAI-----KASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYG 828
Query: 977 SHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHV 1036
P C A + + ++ N+ E ++ I M + L+ +I +
Sbjct: 829 EDRDPATSH--CMLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYI-I 885
Query: 1037 ELQRGHSLQDLLFKACANIS-FFVLTHELLPLDILLLALI----DRDDDPHALRIVITLL 1091
+ + FK A + V ++L D LLL+LI +D ++I +
Sbjct: 886 ADAKTQDCNEKTFKNIAKAAALLVFQFQVLRADRLLLSLIMHPATDEDALICIQIANEFI 945
Query: 1092 DRQELQQRVKLYCMNRGPPEHW---------LYSGLFKRVELQKALGNHLSWKERY-PTF 1141
E Q+R++ Y N +H+ Y F E + + ++ S + PT+
Sbjct: 946 LTPEFQERIRWYHQNVPKKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTY 1005
Query: 1142 FDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1201
+ + RLLP++ ++ +E ++L + S ++ + F+ +L +G +
Sbjct: 1006 YGCLIERLLPIMDQYLHVALEQQGYKLNPQILQSVSMLYKFHAMPIHFMYSVLFTSHGLM 1065
Query: 1202 PG 1203
G
Sbjct: 1066 SG 1067
>sp|A7H220|PPK_CAMJD Polyphosphate kinase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=ppk PE=3 SV=1
Length = 694
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 905 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 962
T L+Q+ A ++ EK L YF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLEHYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 963 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 1017
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKIFDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 1018 EVTSNIYTMVDVLLHHIHVELQRGHSL 1044
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q4R989|PDZD9_MACFA PDZ domain-containing protein 9 OS=Macaca fascicularis GN=PDZD9 PE=2
SV=1
Length = 264
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 1376 ASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQ--ACGLLLAQLPPDFHMQLYMEASRII 1433
ASR G++ S + Q + L + GL++ Q P Y++ + +I
Sbjct: 4 ASRKNKKERGVSIKVKTSVHNLSKTQQTKLTVGRLGLGLIIIQHGP------YLQITHLI 57
Query: 1434 KESWWLADGKRSLGELDSAVGYA-LLDPTWAA--QDNTSTAIGNIVAL-LHSFFSNLPQE 1489
++ DGK G++ +VGYA +L T Q +G ++ + ++ F N+P+E
Sbjct: 58 RKGAAANDGKLQPGDVLISVGYANVLGYTLREFLQLLQHITVGTVLQIKVYRDFINIPEE 117
Query: 1490 WLEGTHVIIKHLRPITS 1506
WLE +I + P+TS
Sbjct: 118 WLEIYDLIPEAKFPVTS 134
>sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens
GN=DNHD1 PE=2 SV=2
Length = 4753
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 609 DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYM 668
D + Q L + + +C +R + + + + QK KQ + WW Q+ K R++DYM
Sbjct: 468 DTYHMQQCLQERVQNCDRIRTGQGSIYLQRVQHKQLEQKLKQAEAWWLQLGKFARLVDYM 527
>sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (strain E) PE=3 SV=1
Length = 3255
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 1521 LPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVV-----HYE 1575
LPR++ H KT ++ D YG T ++A+ + L+ F H + HY
Sbjct: 841 LPRILVDHA--TKTFHVI-----DSYGSITTGYHILKANTVTQLVKFAHESLESEMQHYR 893
Query: 1576 GQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQN 1632
G P +A KP V L ++L E ++ ++P++ I A P+M+++
Sbjct: 894 VGGEPDKAPRKPAGNVPTLGISDLKNLGVESENEEHSIRPNLQRLIKAIYRPRMMRS 950
>sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (strain 0 / isolate
French) PE=2 SV=3
Length = 3255
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 1521 LPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVV-----HYE 1575
LPR++ H KT ++ D YG T ++A+ + L+ F H + HY
Sbjct: 841 LPRILVDHA--TKTFHVI-----DSYGSITTGFHILKANTVTQLVKFAHESLESEMQHYR 893
Query: 1576 GQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQN 1632
G P +A KP V L L E+++ ++P++ I A P+M+++
Sbjct: 894 VGGEPDKAPRKPAGSVPTLGISDLRDLGVELENEEHSIRPNLQRLIKAIYRPRMMRS 950
>sp|Q9EQS9|IGDC4_MOUSE Immunoglobulin superfamily DCC subclass member 4 OS=Mus musculus
GN=Igdcc4 PE=2 SV=1
Length = 1252
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 610 PNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQL-------QKGKQID--EWWRQVSK 660
P+ P + +SS L W R L++EQ+ QK + +D E+ V+
Sbjct: 428 PSAPTRVTATPLSSSSVLVAWE-----RPELHSEQIIGFSLHYQKARGVDNVEYQFAVNN 482
Query: 661 GDRMMDYMNMDDRSVGMFWVVSYTM------AQPACETVMNWLSSAGVTELFPGSNLPPN 714
+ +++ + F+VV+Y+ + PA ++ + SA +L S P +
Sbjct: 483 DTTELQVRDLEPNTDYEFYVVAYSQLGASRTSSPALVHTLDDVPSA-APQLTLSSPNPSD 541
Query: 715 ERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH 774
R+ + PLP SL G L ++ L ED +F +V + ET L L P+
Sbjct: 542 IRVAWL----PLPSSLSNGQVLKYKIEYGLGKEDQVFSTEVPGN----ETQLTLNSLQPN 593
Query: 775 SLFR 778
++R
Sbjct: 594 KVYR 597
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2
Length = 1105
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 208 NYQSSNPASPLPSVHGIGSPAQSAIET--SVCAAMSPVKSSDVSCTGQQFTTRVNSSVRD 265
N + +NP + +G+G AQ + S+C+ P+ + C + T+ N +
Sbjct: 921 NMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSK--TKKNVIATE 978
Query: 266 NAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGI 313
N IS++ ++ L+F V ++ H L+WL + K++ I
Sbjct: 979 NCISAIGKI--------LKFKPNCVNVDEVLPHWLSWLPLHEDKEEAI 1018
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,538,696
Number of Sequences: 539616
Number of extensions: 24535274
Number of successful extensions: 62297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 61942
Number of HSP's gapped (non-prelim): 351
length of query: 1634
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1503
effective length of database: 120,879,763
effective search space: 181682283789
effective search space used: 181682283789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)