Query 000341
Match_columns 1634
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 18:30:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000341.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_117-121//hhsearch_scop/000341hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 13.7 20 0.0014 11.3 0.1 13 794-806 22-34 (145)
2 d1ey1a_ a.79.1.1 (A:) Antiterm 4.1 90 0.0066 6.9 2.8 102 1204-1337 11-113 (139)
3 d1v8da_ c.140.1.1 (A:) Hypothe 4.0 80 0.0058 7.3 -0.3 21 120-140 59-79 (193)
4 d1qhda1 a.115.1.2 (A:1-148,A:3 3.9 96 0.007 6.7 0.1 56 580-635 66-133 (213)
5 d1tuza_ a.39.1.7 (A:) Diacylgl 3.8 1E+02 0.0073 6.6 1.4 13 540-552 92-104 (118)
6 d1om2a_ a.23.4.1 (A:) Mitochon 3.6 1.1E+02 0.0077 6.5 1.8 12 883-894 41-52 (95)
7 d1g7oa1 a.45.1.1 (A:76-215) Gl 3.5 1.1E+02 0.0079 6.4 5.5 73 97-172 50-129 (140)
8 d1bu2a2 a.74.1.1 (A:149-250) V 3.0 1.3E+02 0.0096 5.8 2.0 20 1416-1435 16-35 (102)
9 d2pyqa1 a.279.1.1 (A:1-113) Un 3.0 1.3E+02 0.0097 5.8 3.3 43 304-357 60-104 (113)
10 d1bm9a_ a.4.5.7 (A:) Replicati 3.0 1.3E+02 0.0097 5.8 4.4 43 1153-1197 17-62 (120)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.68 E-value=20 Score=11.32 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.0
Q ss_pred HCCHHHHHHHHHH
Q ss_conf 0260358999863
Q 000341 794 KVGVTPLVLEIVN 806 (1634)
Q Consensus 794 a~giL~~LLEilS 806 (1634)
.|+...-++|+++
T Consensus 22 dw~~il~icD~I~ 34 (145)
T d1dvpa1 22 DWPSILLICDEIN 34 (145)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999995
No 2
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=90 Score=6.92 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983114689888930001004999988999568999999998600444446898888665565788999988778
Q 000341 1204 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1283 (1634)
Q Consensus 1204 kLV~~ILg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~LI~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~ 1283 (1634)
.++..++-+.+...-.+.+...++....+ .-..|..|+..|+.+...+. ...|....
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~-----------~~id~~I~----------- 67 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT-----------AYLDGLMK----------- 67 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHH-----------HHHHHHHT-----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-----------
T ss_conf 99999999998369999999999988345-43145899999999999837-----------88999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCC-CCHHHHHHHHHHHHHC
Q ss_conf 99998888894212379973036665300100101588-8978999888876440
Q 000341 1284 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 1337 (1634)
Q Consensus 1284 ~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLP-vsp~~Vv~aLIdvvv~ 1337 (1634)
.+ .+|.+...+ +--.+++ ..++.|++-++ +|+..+++.-|+++-+
T Consensus 68 ----~~--l~~~~~r~~-~~~~~IL--r~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 68 ----PY--LSRLLEELG-QVEKAVL--RIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp ----TC--CCSCTTTSC-HHHHHHH--HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred ----HH--HHHHHHHCC-HHHHHHH--HHHHHHHHHCCCCCCEEHHHHHHHHHHH
T ss_conf ----98--886487537-6789999--9999999971377761259999999999
No 3
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=4.05 E-value=80 Score=7.28 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCH
Q ss_conf 777988765432237888612
Q 000341 120 SVTESVLISMVVQCCSHVPRA 140 (1634)
Q Consensus 120 ~~te~~~~~~~~qc~~h~p~~ 140 (1634)
.+.+.-=|.|.+|||-|--||
T Consensus 59 ~~~~~~gi~lA~Q~CEHlNRA 79 (193)
T d1v8da_ 59 PPLLERGVHVAVQACEHLNRA 79 (193)
T ss_dssp HHHHTTTCEEEEECCGGGTTC
T ss_pred HHHHHCCEEEEEECHHHHHHH
T ss_conf 998751808987345565788
No 4
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=3.90 E-value=96 Score=6.75 Aligned_cols=56 Identities=32% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHC--------CCCCCCCC--CCC--CCCHHHHHHCCCCCEEEEEECCC
Q ss_conf 7785410143000001344400--------24457899--999--72112232202452479865032
Q 000341 580 LVMGALNSDSRKVETTRKILSF--------HREDRCTD--PNN--PQSILLDFISSCQNLRIWSLNTS 635 (1634)
Q Consensus 580 ~v~~~~~~~~~~v~t~~~ilsf--------~~~d~~~d--~n~--pqs~~~df~~s~q~l~iw~~n~~ 635 (1634)
+-+++|+-|.--||++|-++-| |+.+-+-+ -|. |||--|--.+++.--||.+=|.+
T Consensus 66 LGTTLLNLD~NYVe~aR~~Idy~~~Fid~VC~DEivREsqRNG~~PQS~~L~~Ls~~kfk~Inf~NsS 133 (213)
T d1qhda1 66 LGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSS 133 (213)
T ss_dssp CCCCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTTSCCSHHHHHHTSGGGGGGCCCCCS
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 01211146268888888899999999998737999999873688999878999853542476447806
No 5
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.77 E-value=1e+02 Score=6.62 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2666799899999
Q 000341 540 GCIDFVDFVDKLV 552 (1634)
Q Consensus 540 ~~~df~~fi~kL~ 552 (1634)
|.|||.+||..|+
T Consensus 92 g~I~f~efv~~LS 104 (118)
T d1tuza_ 92 DVVCLNDVSCYFS 104 (118)
T ss_dssp CCEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHH
T ss_conf 6461999999999
No 6
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.59 E-value=1.1e+02 Score=6.45 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999775254
Q 000341 883 IALAIIIKTRGI 894 (1634)
Q Consensus 883 LTLARsiKitGi 894 (1634)
.-|++++.+.|+
T Consensus 41 ~h~~nAi~Vc~q 52 (95)
T d1om2a_ 41 DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998278
No 7
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=1.1e+02 Score=6.38 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHHH---CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86023212999860099946776777988765---4322---37888612479999-99864205434310178996544
Q 000341 97 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLIS---MVVQ---CCSHVPRAEFILFA-LRSLCSIGYINWDTFLPSLLSSV 169 (1634)
Q Consensus 97 ~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~---~~~q---c~~h~p~~~fll~~-~~~l~~~~~~~wd~~l~~ll~~~ 169 (1634)
|.|+++.||+++..+-+ |+-.--|..|-- ++.. +.+.---.|+++|. ||+|+..--|.|++=+-..+..+
T Consensus 50 kKe~~~g~f~~~l~~t~---~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~ 126 (140)
T d1g7oa1 50 KKEASAGNFADLLAHSD---GLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNM 126 (140)
T ss_dssp TTTTTCTHHHHHHHHHH---HHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66641179999987579---999999999999999982735558876699999999986457516787888899999999
Q ss_pred HHH
Q ss_conf 320
Q 000341 170 SSA 172 (1634)
Q Consensus 170 ~~~ 172 (1634)
|..
T Consensus 127 s~~ 129 (140)
T d1g7oa1 127 AKQ 129 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 8
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=3.01 E-value=1.3e+02 Score=5.84 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 19935799999999998605
Q 000341 1416 QLPPDFHMQLYMEASRIIKE 1435 (1634)
Q Consensus 1416 aLP~~f~~~ly~ei~~vik~ 1435 (1634)
..|++||-++|+.....|+.
T Consensus 16 kipe~~wpql~e~~s~tick 35 (102)
T d1bu2a2 16 KIPEDLWPQLYEAASTTICK 35 (102)
T ss_dssp TCCTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 69677849999998999999
No 9
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=2.98 E-value=1.3e+02 Score=5.80 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHC
Q ss_conf 71001124877567864410157999999889998887--5399765416998620
Q 000341 304 VTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLL--VDEDRCRVPFYELLRT 357 (1634)
Q Consensus 304 ~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~cl~viw~l--v~e~~~rvpfy~ll~~ 357 (1634)
.||=.+-.|+.|++ +-...--.|+=.. -+-+|+|+.||-||--
T Consensus 60 ~nfl~KKLGl~D~~-----------~ld~aI~~V~e~~g~s~r~K~R~~~YYllak 104 (113)
T d2pyqa1 60 KNFLMKKLGLADSE-----------SLMGGIQSVIETYGRSERNKYRAVVYYMLTK 104 (113)
T ss_dssp HHTTTTTSCCCSSH-----------HHHHHHHHHHHHHCTTCSCCBHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCH-----------HHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
T ss_conf 80899970899748-----------7999999999997035577530220678788
No 10
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=2.97 E-value=1.3e+02 Score=5.79 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4699999870583---11499999861000003876404466768753
Q 000341 1153 IPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSFVRDILAYF 1197 (1634)
Q Consensus 1153 iDiVIhR~LE~~~---~k~letLL~~lg~LYkYHd~PvTFlY~tLhYy 1197 (1634)
+-+++.+.+|++. .++++-|=+-|+|+ -||| |-|=+|.+||-.
T Consensus 17 lKlYlit~~eq~r~YG~q~L~~Lr~eFk~~-Gy~P-~hsEiYraLHeL 62 (120)
T d1bm9a_ 17 LKLYMITMTEQERLYGLKLLEVLRSEFKEI-GFKP-NHTEVYRSLHEL 62 (120)
T ss_dssp HHHHHHHHHHTTCCBSTTHHHHHHHHHTTT-TCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
T ss_conf 876541103502112799999999987853-8899-778999999999
Done!