BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000342
(1634 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 159/343 (46%), Gaps = 39/343 (11%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LWHL FR F R + H +G+ C+ CAL IF +
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQCS 89
Query: 1362 STDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
S E V P+ +LR AL+ + D FQ M+DA+E + +H +++D
Sbjct: 90 S-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIAD 138
Query: 1421 TESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALR 1480
E+ E C T CI H F M +FE+ C SCG S L + H I+ +AL
Sbjct: 139 -ETKEDIC------TAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALC 191
Query: 1481 TMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTT 1532
+ E S ELL N M C C + I +L P + T
Sbjct: 192 NQAICMLEKREKPSPSMFGELLQNASTMGDLRNC---PSNCGERIRIRRVLMNAPQIITI 248
Query: 1533 VLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCF 1588
L W + +D+ +L D+ +R D + + S LV ++CYYG+HY F
Sbjct: 249 GLVWDSEHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTF 306
Query: 1589 AYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
+ +W+ +DD VK +G W DV++ C +GH QP +L +
Sbjct: 307 FFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 159/343 (46%), Gaps = 39/343 (11%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LWHL FR F R + H +G+ C+ CAL IF +
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQCS 89
Query: 1362 STDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
S E V P+ +LR AL+ + D FQ M+DA+E + +H +++D
Sbjct: 90 S-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIAD 138
Query: 1421 TESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALR 1480
E+ E C T CI H F M +FE+ C SCG S L + H I+ ++L
Sbjct: 139 -ETKEDIC------TAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLC 191
Query: 1481 TMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTT 1532
+ E S ELL N M C C + I +L P + T
Sbjct: 192 NQAICMLERREKPSPSMFGELLQNASTMGDLRNC---PSNCGERIRIRRVLMNAPQIITI 248
Query: 1533 VLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCF 1588
L W + +D+ +L D+ +R D + + S LV ++CYYG+HY F
Sbjct: 249 GLVWDSDHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTF 306
Query: 1589 AYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
+ +W+ +DD VK +G W DV++ C +GH QP +L +
Sbjct: 307 FFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 157/346 (45%), Gaps = 45/346 (13%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LW L FR S R + H+ G+ C+ CAL IF
Sbjct: 31 GLLNEPGQNSCFLNSAVQVLWQLDIFRR--SLRVLTGHVCQGDACIFCALKTIFAQFQ-- 86
Query: 1362 STDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDT 1421
+R++A+ ++R AL+ + D FQ M+DA+E + + +H P +
Sbjct: 87 --HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVPSRDADM- 143
Query: 1422 ESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASAL-- 1479
CT+ +CI H F M ++E+ C SCG S L +T F I+ +AL
Sbjct: 144 ------------CTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCN 191
Query: 1480 ----------RTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHV 1529
R M A ELL P C + I +L P +
Sbjct: 192 EVERMLERHERFKPEMFA-----ELLQAANTTDDYRKCP--SNCGQKIKIRRVLMNCPEI 244
Query: 1530 FTTVLGWQNTCESFDDITATLAALSPEIDI-SILYRGLDPKRRHS---LVSVVCYYGQHY 1585
T L W + E D A + L+ + + + YR D ++S LV ++CY QHY
Sbjct: 245 VTIGLVWDS--EHSDLTEAVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMICYTSQHY 302
Query: 1586 HCFAYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
FA+ +W+ +DD VK +G+ W DV+S C R H QP +LF+
Sbjct: 303 CAFAFHTKSSKWVFFDDANVKEIGTRWKDVVSKCIRCHFQPLLLFY 348
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 158/343 (46%), Gaps = 39/343 (11%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LWHL FR F R + H +G+ C+ CAL IF +
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIFRRSF--RQLTSHKCMGDSCIFCALKGIFKQFQCS 89
Query: 1362 STDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
S E V P+ +LR AL+ + D FQ M+DA+E + +H +++D
Sbjct: 90 S-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIAD 138
Query: 1421 TESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALR 1480
E+ E C T CI H F M +FE+ C SCG S L + H I+ ++L
Sbjct: 139 -ETKEDIC------TAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLC 191
Query: 1481 TMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTT 1532
+ E ELL N M C C + I +L P + T
Sbjct: 192 NQAICMLEKREKPSPGMFGELLQNASTMGDLRDC---PSNCGERIRIRRVLMNAPQIITI 248
Query: 1533 VLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCF 1588
L W + +D+ +L D+ +R D + + S LV ++CYYG+HY F
Sbjct: 249 GLVWDSDHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTF 306
Query: 1589 AYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
+ +W+ +DD VK +G W DV++ C +GH QP +L +
Sbjct: 307 FFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 155/341 (45%), Gaps = 35/341 (10%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LW L FR S R+ + HI G+ C+ CAL IF
Sbjct: 31 GLLNEPGQNSCFLNSAVQVLWQLDIFRR--SLRALTGHICQGDACIFCALKTIFAQFQ-- 86
Query: 1362 STDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDT 1421
+R++A+ ++R AL+ + D FQ M+DA+E I +H P +
Sbjct: 87 --HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIHFHLVPNRDADM- 143
Query: 1422 ESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASAL-- 1479
CT+ +C+ H F M ++E+ C SCG S L +T I+ +AL
Sbjct: 144 ------------CTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCN 191
Query: 1480 ---RTMKV--MCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534
R M+ ELL P C + I +L P + T L
Sbjct: 192 EVERMMERHERVKPEMFAELLQAANTADDYRKCP--SNCGQKIKIRRVLMNCPEIVTIGL 249
Query: 1535 GWQNTCESFDDITATLAALSPEIDI-SILYRGLDPKRRHS---LVSVVCYYGQHYHCFAY 1590
W + E D + +L+ + + + YR D S LV ++CY +HY FA+
Sbjct: 250 VWDS--EHSDLTEDVVRSLATHLYLPGLFYRVTDENATDSELHLVGMICYTSRHYCAFAF 307
Query: 1591 SHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
+W+ +DD VK +G+ W DV+S C R HLQP +LF+
Sbjct: 308 HTKSSKWVFFDDAHVKEMGTRWKDVVSKCIRCHLQPLLLFY 348
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana
GN=UBP23 PE=2 SV=2
Length = 859
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 132/323 (40%), Gaps = 48/323 (14%)
Query: 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYE-IFTAL 1358
GAGL+N +G CFLN ++Q L + + ++ HV C +CA+ + + TA
Sbjct: 106 GAGLQN-LGN-TCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVRTA- 162
Query: 1359 SIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV 1418
+AP L +SNL S F+ + DA E + + +C+H+ P
Sbjct: 163 ----RQANGRILAPKDL---VSNLRCISRNFRNCRQEDAHEYMINLLECMHKCSLPSGVP 215
Query: 1419 SDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH-NINAS 1477
S++ + VH +FG + ++ C C S K+ F +++ S
Sbjct: 216 SESSDAYRRSL-----------VHKIFGGSLRSQVKCEQCSHCSN--KFDPFLDLSLDIS 262
Query: 1478 ALRTMKVMCAESSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGW 1536
+++ + + ELL N ++ C ++L +S P+V T L
Sbjct: 263 KADSLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQLT-----VSKAPYVLTVHLKR 317
Query: 1537 --QNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYGQ-----HYHCFA 1589
+ E D +A+ + +S + G +++L V+ +YG+ HY CF
Sbjct: 318 FEAHRSEKIDRKVDFTSAIDMKPFVSGPHEG---NLKYTLYGVLVHYGRSSHSGHYACFV 374
Query: 1590 -------YSHDQERWIMYDDKTV 1605
YS D R + +KTV
Sbjct: 375 RTSSGMWYSLDDNRVVQVSEKTV 397
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1
SV=2
Length = 520
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 27/201 (13%)
Query: 1282 AVLSNEVRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH 1341
+ L++++ N + + GL+N +G CF+N I+QSL ++ +F F + P+ +
Sbjct: 140 STLNSKLLKVNGSTTAICATGLRN-LGN-TCFMNAILQSLSNIEQFCCYF-KELPAVELR 196
Query: 1342 VGEPCVV------------CALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFF 1389
G+ +L E F A + A +P SL + + P+ F
Sbjct: 197 NGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN---F 253
Query: 1390 QEAQMNDASEVLAVIFDCLHRSFTPGSN-VSDTESVESNCMGSWDCTNSACI------VH 1442
+ Q DA E + + D LH G N VS + ++ N + +N CI V
Sbjct: 254 RGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQEN--STLSASNKCCINGASTVVT 311
Query: 1443 SLFGMDIFERMNCYSCGLESR 1463
++FG + +NC CG ESR
Sbjct: 312 AIFGGILQNEVNCLICGTESR 332
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2
SV=1
Length = 520
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 29/192 (15%)
Query: 1293 VNG--IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPC---- 1346
VNG + GL+N +G CF+N I+QSL ++ +F F + P+ + G+
Sbjct: 149 VNGSTTAICATGLRN-LGN-TCFMNAILQSLSNIEQFCCYF-KELPAVELRNGKTAGRRT 205
Query: 1347 --------VVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDAS 1398
+L E F A + A +P SL + + P+ F+ Q DA
Sbjct: 206 YHTRSQGDSNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN---FRGYQQQDAH 262
Query: 1399 EVLAVIFDCLHRSFTPGSN-VSDTESVESNCMGSWDCTNSACI------VHSLFGMDIFE 1451
E + + D LH G N VS + ++ N + +N CI V ++FG +
Sbjct: 263 EFMRYLLDHLHLELQGGFNGVSRSAILQEN--STLSASNKCCINGASTVVTAIFGGILQN 320
Query: 1452 RMNCYSCGLESR 1463
+NC CG ESR
Sbjct: 321 EVNCLICGTESR 332
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 1311 NCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEI-FTALSIASTDTRKEA 1369
CF+N +IQSL + R R+ F RS I+ P I F L A +A
Sbjct: 547 TCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHQA 606
Query: 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESN 1427
P+ L+ +++ S F AQ +DA E +A + D LH N TE+V+S+
Sbjct: 607 FQPSKLKAIVASKA--SQFTGYAQ-HDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSD 661
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 1311 NCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEI-FTALSIASTDTRKEA 1369
CF+N +IQSL + R R+ F RS I+ P I F L A +A
Sbjct: 544 TCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHQA 603
Query: 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESN 1427
P+ L+ +++ S F AQ +DA E +A + D LH N TE+V+S+
Sbjct: 604 FQPSKLKAIVASKA--SQFTGYAQ-HDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSD 658
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51
PE=2 SV=1
Length = 711
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 1298 VYGAGLKNEVGEYN-CFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFT 1356
VY GL+ + N CF+N I+Q+L H+ ++ F + C+VC + +F
Sbjct: 357 VYTVGLRGLINLGNTCFMNCIVQALTHIPLLKDFFLSDKHKCIMTSPSLCLVCEMSSLFH 416
Query: 1357 ALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGS 1416
A+ S + P L L ++ + + DA E L I D LHR
Sbjct: 417 AMYSGS----RTPHIPYKL---LHLIWIHAEHLAGYRQQDAHEFLIAILDVLHR-----H 464
Query: 1417 NVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458
+ D+ E+N + +C N CI+ +F + + C +C
Sbjct: 465 SKDDSGGQEAN---NPNCCN--CIIDQIFTGGLQSDVTCQAC 501
>sp|Q9FPT5|UBP1_ARATH Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana
GN=UBP1 PE=1 SV=2
Length = 1083
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 1312 CFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVA 1371
CF N ++Q+L L + RE F + E + V P +V +L E+F + ++ R E +
Sbjct: 211 CFFNSVMQNLLSLDQLREHFLK----EDLSVSGP-LVSSLKELFAESNSEASVFRNE-IN 264
Query: 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGS 1431
P L ++ + P F+ Q +D+ E+L + D L S ES +G
Sbjct: 265 PRDLFFSVCSQAPQ---FRGYQQHDSHELLRCLLDGL----------SIEESSLRKKLGV 311
Query: 1432 WDCTNSA-----CIVHSLFGMDIFERMNCYSCG 1459
D +S+ ++ S+FG +I ++C CG
Sbjct: 312 SDSNDSSTYQKPTLIDSVFGGEISSTVSCLECG 344
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 1311 NCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEI-FTALSIASTDTRKEA 1369
CF+N +IQSL + R R+ F RS I+ P I F L A A
Sbjct: 505 TCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHHA 564
Query: 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESN 1427
P+ L+ +++ S F AQ +DA E +A + D LH N TE+V+S+
Sbjct: 565 FQPSKLKAIVASKA--SQFTGYAQ-HDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSD 619
>sp|Q9ES63|UBP29_MOUSE Ubiquitin carboxyl-terminal hydrolase 29 OS=Mus musculus GN=Usp29
PE=2 SV=2
Length = 869
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 1312 CFLNVIIQSLWHLRRF-REEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAV 1370
C++N I+QS++ + F ++ ++ P E + + ++ L ++ I + + E +
Sbjct: 298 CYMNSILQSVFGIPTFAKDLLTQGIPWEKVSYDD--LIMPLSQLLVLKDIRDVEIKGELL 355
Query: 1371 APTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMG 1430
TS++ ++S + ++ F + NDA E L++ D L + + + DTE + C G
Sbjct: 356 --TSVKKSISTV---ADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNAMWDTER-RNTCAG 409
Query: 1431 SWDCTNSACIVHSLFGMDIFERMNCYSCG 1459
S C V + F ++ + C CG
Sbjct: 410 SAGTKRFVCPVGANFEFELHSSIICEGCG 438
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36
PE=1 SV=3
Length = 1121
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 23/160 (14%)
Query: 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYE-IFTAL 1358
GAGL N +G CFLN IQ L + + + H G C++C + I A
Sbjct: 121 GAGLHN-LGN-TCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAF 178
Query: 1359 SIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV 1418
+ + A+ P S + +L + F+ DA E L D + ++ G
Sbjct: 179 ANSG-----NAIKPVSF---IRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGCAK 230
Query: 1419 SDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458
D + T + +VH +FG + R+ C C
Sbjct: 231 LDRQ------------TQATTLVHQIFGGYLRSRVKCSVC 258
>sp|C9J2P7|U17LF_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 OS=Homo
sapiens GN=USP17L15 PE=3 SV=1
Length = 530
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 128/352 (36%), Gaps = 79/352 (22%)
Query: 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALS 1359
GAGL+N +G C++N +Q L + R S+ H + C++C + T
Sbjct: 79 GAGLQN-MGN-TCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHIT--- 133
Query: 1360 IASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVS 1419
+ + P+ A F + DA E L D + ++ PG
Sbjct: 134 -RALHNPGHVIQPSQALAA---------GFHRGKQEDAHEFLMFTVDAMKKACLPGHKQV 183
Query: 1420 DTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC-GLESRHLKYTSFFHNINASA 1478
D S ++ ++H +FG ++ C C G+ Y +I A+
Sbjct: 184 DHHSKDTT------------LIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAA- 230
Query: 1479 LRTMKVMCAESSLDELLNLVEMN-----HQLACDPGAGGCEKLNYIHHILSTPPHVFTTV 1533
+ +L++L+ E+N H C A + L L T V V
Sbjct: 231 ------QSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLT-----LHTSAKVLILV 279
Query: 1534 LGWQNTCESFDDITATLAALSPEIDISILY-RGLDPKRRHS----------LVSVVCYYG 1582
L + F D+T +ID ++ Y LD K S L +V+ + G
Sbjct: 280 L------KRFSDVTGN------KIDKNVQYPECLDMKLYMSQTNSGPLVYVLYAVLVHAG 327
Query: 1583 ---QHYHCFAYSHDQE-RWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFF 1630
+ H F+Y QE +W DD V S + VLS Q VLF+
Sbjct: 328 WSCHNGHYFSYVKAQEGQWYKMDDAEV-TASSITSVLSQ------QAYVLFY 372
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36
PE=2 SV=1
Length = 1098
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 21/159 (13%)
Query: 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALS 1359
GAGL N +G CFLN IQ L + + + H G C++C L + +
Sbjct: 121 GAGLHN-LGN-TCFLNSTIQCLTYTPPLANYLLSKEHARSCHQGGFCMLC-LMQNHMVQA 177
Query: 1360 IASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVS 1419
A++ A+ P S + +L + F+ DA E L D + ++ G
Sbjct: 178 FANSG---NAIKPVSF---IRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGYAKL 231
Query: 1420 DTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458
D + T + +VH +FG + R+ C C
Sbjct: 232 DRQ------------TQATTLVHQIFGGYLRSRVKCSVC 258
>sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27
PE=2 SV=2
Length = 438
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 18/161 (11%)
Query: 1299 YGAGLKNEVGEYN-CFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTA 1357
+ GL+ + N CF+N I+Q+L H R+ F + E C+VC + +F
Sbjct: 73 FTIGLRGLINLGNTCFMNCIVQALTHTPILRDFFLSDRHRCEMPSPELCLVCEMSSLFRE 132
Query: 1358 LSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSN 1417
L + P L L ++ + + DA E L D LHR G +
Sbjct: 133 LYSGNPSPH----VPYKL---LHLVWIHARHLAGYRQQDAHEFLIAALDVLHRH-CKGDD 184
Query: 1418 VSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458
V S ++C CI+ +F + + C +C
Sbjct: 185 VGKVASNPNHC---------NCIIDQIFTGGLQSDVTCQAC 216
>sp|Q72QU2|CLPB_LEPIC Chaperone protein ClpB OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=clpB PE=3 SV=1
Length = 860
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 629 ERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHE 688
E ++ D AN VS I + +L G+ + LLL E +L T++I D + V+ A R
Sbjct: 534 EEVSEEDIANIVSRWTGIPVSKMLQGERAKLLLMEDVLKTKVIGQDHALRLVSEAVQRSR 593
Query: 689 NGVAEDADALLTWIFAGPSS 708
G+A+ + T++F GP+
Sbjct: 594 AGIADPNRPIGTFLFLGPTG 613
>sp|Q8F509|CLPB_LEPIN Chaperone protein ClpB OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=clpB
PE=3 SV=1
Length = 860
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 629 ERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHE 688
E ++ D AN VS I + +L G+ + LLL E +L T++I D + V+ A R
Sbjct: 534 EEVSEEDIANIVSRWTGIPVSKMLQGERAKLLLMEDVLKTKVIGQDHALRLVSEAVQRSR 593
Query: 689 NGVAEDADALLTWIFAGPSS 708
G+A+ + T++F GP+
Sbjct: 594 AGIADPNRPIGTFLFLGPTG 613
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1
SV=2
Length = 605
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSI 1360
AGL+N +G CF+N I+Q L + R R+ +R +H G + E +
Sbjct: 267 AGLRN-LGN-TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 324
Query: 1361 ASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLH 1409
T + + V+P+ + + P F DA E L + D LH
Sbjct: 325 IWTSSPNDVVSPSEFKTQIQRYAPR---FVGYNQQDAQEFLRFLLDGLH 370
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1
Length = 451
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 1569 KRRHSLVSVVCYYGQ-----HYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLS 1616
++++SL SVV ++G+ HY C Y Q +WI YDD T V DVL+
Sbjct: 388 QKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYDDSTFTEVKE-QDVLN 439
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3
OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 189 QKILTADARIAHVQSELRSLIQKSNIASISTWMKNLGTGEEKFRLIPIRRVAEDPMEVRL 248
QK+ TA A +QS L+ +IA T + NL E+ + +P + + PM+ R
Sbjct: 635 QKVRTASTDTASLQSLLK------DIAVNPTMLLNLLKMGERQK-VP-EKAIQKPMDPRR 686
Query: 249 VQARRPNEIKKATKTPEERRKEIEVRVAAARLLQQKS-ETGQLYQNNEGERNVDSGSGGL 307
+ ++ TP + + A+ L S +G L +++ +SGS +
Sbjct: 687 AAQLPGSSVQPGVSTP--------LSIPASNALAANSLNSGVLQDSSQNAPAAESGSIRM 738
Query: 308 EKRERERRKHGSNLRRNRSKEERRDFVRSYWNSMSLEMK 346
+ R+ R HGS L+R S E++ V +L MK
Sbjct: 739 KPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMK 777
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,590,777
Number of Sequences: 539616
Number of extensions: 25229013
Number of successful extensions: 89843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 500
Number of HSP's that attempted gapping in prelim test: 87833
Number of HSP's gapped (non-prelim): 2463
length of query: 1634
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1503
effective length of database: 120,879,763
effective search space: 181682283789
effective search space used: 181682283789
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)