Query 000342
Match_columns 1634
No_of_seqs 375 out of 1421
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 1E-126 3E-131 1131.2 31.1 463 333-866 2-465 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 9.8E-83 2.1E-87 777.1 17.6 775 535-1632 2-789 (806)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 1.3E-48 2.9E-53 464.2 21.3 294 1294-1632 102-409 (545)
4 cd02663 Peptidase_C19G A subfa 100.0 6.7E-44 1.5E-48 418.6 26.2 280 1302-1631 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 2.9E-43 6.2E-48 417.3 27.1 299 1301-1630 1-327 (328)
6 cd02668 Peptidase_C19L A subfa 100.0 2.6E-43 5.5E-48 417.9 26.6 282 1302-1631 1-324 (324)
7 cd02657 Peptidase_C19A A subfa 100.0 3.4E-43 7.3E-48 412.8 27.0 287 1302-1631 1-305 (305)
8 cd02661 Peptidase_C19E A subfa 100.0 5E-43 1.1E-47 409.3 25.8 288 1300-1630 1-303 (304)
9 cd02664 Peptidase_C19H A subfa 100.0 2.2E-42 4.8E-47 410.5 24.6 268 1302-1631 1-327 (327)
10 cd02658 Peptidase_C19B A subfa 100.0 3.6E-42 7.7E-47 405.4 25.5 282 1302-1631 1-311 (311)
11 cd02671 Peptidase_C19O A subfa 100.0 5.9E-42 1.3E-46 406.6 26.1 280 1292-1631 16-332 (332)
12 cd02667 Peptidase_C19K A subfa 100.0 1.9E-42 4.1E-47 402.4 21.2 243 1302-1631 1-279 (279)
13 cd02669 Peptidase_C19M A subfa 100.0 5.9E-42 1.3E-46 421.2 26.7 292 1298-1631 117-440 (440)
14 cd02659 peptidase_C19C A subfa 100.0 3.8E-41 8.1E-46 400.2 26.3 289 1300-1634 2-333 (334)
15 COG5560 UBP12 Ubiquitin C-term 100.0 1.1E-41 2.3E-46 402.6 12.3 314 1298-1634 263-823 (823)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 1.2E-38 2.5E-43 352.2 17.7 309 1297-1633 68-414 (415)
17 cd02662 Peptidase_C19F A subfa 100.0 5.3E-37 1.1E-41 349.4 20.3 210 1302-1631 1-240 (240)
18 PF00443 UCH: Ubiquitin carbox 100.0 1.6E-35 3.6E-40 335.7 23.4 252 1300-1630 1-269 (269)
19 cd02666 Peptidase_C19J A subfa 100.0 2.3E-35 4.9E-40 350.5 17.5 284 1300-1630 1-342 (343)
20 KOG1868 Ubiquitin C-terminal h 100.0 6.5E-35 1.4E-39 362.7 12.8 316 1293-1633 294-646 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 4E-33 8.8E-38 313.8 18.1 193 1393-1631 21-230 (230)
22 KOG0944 Ubiquitin-specific pro 100.0 6.4E-33 1.4E-37 332.0 18.4 309 1213-1563 223-547 (763)
23 cd02665 Peptidase_C19I A subfa 100.0 6.9E-32 1.5E-36 303.1 17.6 200 1393-1631 21-228 (228)
24 KOG1867 Ubiquitin-specific pro 100.0 4.9E-32 1.1E-36 332.4 16.1 309 1294-1632 155-483 (492)
25 cd02673 Peptidase_C19Q A subfa 100.0 1.4E-31 3.1E-36 305.2 18.6 208 1389-1631 28-245 (245)
26 COG5077 Ubiquitin carboxyl-ter 100.0 2.9E-32 6.2E-37 326.7 12.1 286 1296-1632 189-510 (1089)
27 cd02257 Peptidase_C19 Peptidas 100.0 2E-30 4.3E-35 289.5 20.6 217 1393-1631 21-255 (255)
28 KOG1866 Ubiquitin carboxyl-ter 100.0 3.6E-32 7.7E-37 326.4 5.4 293 1295-1633 90-434 (944)
29 KOG1873 Ubiquitin-specific pro 100.0 5.2E-30 1.1E-34 309.4 11.1 160 1292-1461 197-386 (877)
30 COG5207 UBP14 Isopeptidase T [ 100.0 9.1E-29 2E-33 286.8 16.5 202 1300-1539 303-511 (749)
31 KOG1870 Ubiquitin C-terminal h 99.9 1.5E-27 3.2E-32 311.5 12.0 318 1293-1634 239-842 (842)
32 cd02672 Peptidase_C19P A subfa 99.9 3.4E-27 7.4E-32 272.7 12.7 228 1298-1631 13-268 (268)
33 KOG1863 Ubiquitin carboxyl-ter 99.9 1.7E-26 3.8E-31 308.1 16.1 298 1292-1633 162-485 (1093)
34 PF13423 UCH_1: Ubiquitin carb 99.9 8.7E-25 1.9E-29 256.6 21.4 273 1301-1605 1-295 (295)
35 PF04781 DUF627: Protein of un 99.9 9.8E-26 2.1E-30 222.4 10.4 107 62-175 1-110 (111)
36 KOG4598 Putative ubiquitin-spe 99.9 2.2E-26 4.7E-31 273.0 2.8 267 1298-1634 85-442 (1203)
37 KOG1871 Ubiquitin-specific pro 99.9 6.6E-24 1.4E-28 243.6 13.8 321 1297-1634 25-420 (420)
38 cd02670 Peptidase_C19N A subfa 99.9 2.4E-23 5.3E-28 236.1 13.9 118 1488-1631 79-241 (241)
39 KOG1864 Ubiquitin-specific pro 99.9 4.7E-22 1E-26 248.1 17.3 310 1296-1631 228-570 (587)
40 KOG1872 Ubiquitin-specific pro 99.8 2.3E-21 5.1E-26 228.2 7.7 295 1297-1632 102-468 (473)
41 KOG2026 Spindle pole body prot 99.8 2.4E-19 5.2E-24 205.3 12.3 279 1298-1610 132-425 (442)
42 KOG1275 PAB-dependent poly(A) 99.6 1.3E-14 2.9E-19 179.5 14.4 310 1297-1630 496-860 (1118)
43 PF15499 Peptidase_C98: Ubiqui 98.2 6.1E-06 1.3E-10 92.8 9.7 129 1438-1606 120-254 (275)
44 PRK15359 type III secretion sy 96.9 0.0082 1.8E-07 63.9 11.8 97 63-178 30-126 (144)
45 KOG1887 Ubiquitin carboxyl-ter 96.8 0.00032 6.9E-09 89.7 0.4 326 825-1196 23-357 (806)
46 PLN03088 SGT1, suppressor of 96.7 0.0096 2.1E-07 72.8 11.4 98 62-178 7-104 (356)
47 TIGR02552 LcrH_SycD type III s 96.0 0.088 1.9E-06 54.3 12.8 96 60-173 20-115 (135)
48 PRK10803 tol-pal system protei 95.9 0.094 2E-06 61.7 13.6 99 58-171 143-245 (263)
49 PRK11189 lipoprotein NlpI; Pro 95.4 0.085 1.8E-06 62.9 11.1 100 61-179 68-167 (296)
50 TIGR02795 tol_pal_ybgF tol-pal 95.1 0.23 5E-06 49.4 11.6 97 61-172 6-105 (119)
51 PRK10370 formate-dependent nit 94.8 0.23 5E-06 55.9 11.6 98 65-177 81-178 (198)
52 COG4783 Putative Zn-dependent 94.7 0.14 3.1E-06 63.3 10.4 101 63-182 312-412 (484)
53 KOG1864 Ubiquitin-specific pro 94.6 0.044 9.5E-07 70.7 5.9 109 1303-1415 34-155 (587)
54 PF13894 zf-C2H2_4: C2H2-type 94.4 0.026 5.6E-07 40.9 2.0 24 389-412 1-24 (24)
55 cd00189 TPR Tetratricopeptide 94.4 0.52 1.1E-05 42.8 11.2 92 63-172 6-97 (100)
56 PRK12370 invasion protein regu 94.4 0.17 3.7E-06 65.6 10.6 94 69-181 316-409 (553)
57 PRK15179 Vi polysaccharide bio 94.3 0.19 4.1E-06 66.5 10.9 107 56-181 50-157 (694)
58 PF13432 TPR_16: Tetratricopep 94.2 0.1 2.2E-06 47.3 5.8 62 63-138 3-64 (65)
59 COG3063 PilF Tfp pilus assembl 93.9 0.39 8.4E-06 54.8 10.6 106 58-181 36-144 (250)
60 PRK12370 invasion protein regu 93.8 0.19 4.2E-06 65.1 9.5 98 66-181 347-444 (553)
61 PF00096 zf-C2H2: Zinc finger, 93.7 0.044 9.5E-07 39.9 1.9 23 389-412 1-23 (23)
62 PRK15179 Vi polysaccharide bio 93.5 0.54 1.2E-05 62.4 12.9 124 67-213 96-219 (694)
63 PF13371 TPR_9: Tetratricopept 92.9 0.37 7.9E-06 44.5 7.3 69 66-148 4-72 (73)
64 KOG2076 RNA polymerase III tra 92.8 0.71 1.5E-05 60.8 12.1 112 57-172 139-270 (895)
65 TIGR00990 3a0801s09 mitochondr 92.7 1.2 2.6E-05 58.6 14.4 107 60-173 368-497 (615)
66 TIGR02521 type_IV_pilW type IV 92.5 0.81 1.8E-05 50.1 10.7 97 58-172 32-128 (234)
67 PRK15174 Vi polysaccharide exp 92.4 0.53 1.1E-05 62.4 10.6 101 65-180 220-320 (656)
68 PRK15174 Vi polysaccharide exp 92.4 0.39 8.4E-06 63.6 9.4 99 64-181 49-147 (656)
69 PF09976 TPR_21: Tetratricopep 91.9 1.6 3.6E-05 46.2 11.8 92 62-168 16-110 (145)
70 TIGR00990 3a0801s09 mitochondr 91.5 0.95 2E-05 59.5 11.4 102 64-172 338-462 (615)
71 PF13414 TPR_11: TPR repeat; P 91.4 0.64 1.4E-05 42.4 7.0 65 94-172 3-67 (69)
72 TIGR03302 OM_YfiO outer membra 91.3 1.5 3.2E-05 49.9 11.3 102 64-172 77-195 (235)
73 PF08715 Viral_protease: Papai 90.8 0.94 2E-05 54.6 9.3 69 1310-1410 110-179 (320)
74 PRK09782 bacteriophage N4 rece 90.8 2 4.3E-05 59.4 13.6 48 122-173 660-707 (987)
75 PRK10370 formate-dependent nit 90.7 1.2 2.7E-05 50.1 9.7 95 70-180 52-146 (198)
76 PF12895 Apc3: Anaphase-promot 90.6 1.1 2.4E-05 42.8 8.1 83 70-169 2-84 (84)
77 COG5010 TadD Flp pilus assembl 89.6 1.5 3.2E-05 50.9 9.2 92 63-172 106-197 (257)
78 PRK02603 photosystem I assembl 89.0 2.8 6E-05 45.8 10.6 100 60-170 38-140 (172)
79 PF09295 ChAPs: ChAPs (Chs5p-A 88.9 1.6 3.4E-05 54.4 9.5 80 69-166 212-291 (395)
80 PF13432 TPR_16: Tetratricopep 88.8 0.98 2.1E-05 40.8 5.8 53 121-178 13-65 (65)
81 PF13525 YfiO: Outer membrane 88.4 5.7 0.00012 44.8 12.9 82 60-141 45-126 (203)
82 PF13525 YfiO: Outer membrane 87.8 6.7 0.00015 44.3 13.0 68 62-140 10-77 (203)
83 PRK10049 pgaA outer membrane p 87.6 2.6 5.6E-05 57.0 11.2 101 62-181 364-464 (765)
84 PF13414 TPR_11: TPR repeat; P 87.5 1.7 3.7E-05 39.6 6.7 63 61-136 7-69 (69)
85 KOG0553 TPR repeat-containing 87.5 0.99 2.2E-05 53.3 6.1 55 114-172 90-144 (304)
86 cd05804 StaR_like StaR_like; a 87.4 9.3 0.0002 46.0 14.8 111 59-173 45-178 (355)
87 PF13512 TPR_18: Tetratricopep 86.8 2.4 5.2E-05 45.5 8.0 82 59-140 49-134 (142)
88 PF14559 TPR_19: Tetratricopep 86.7 1.7 3.6E-05 39.5 6.1 67 67-147 1-67 (68)
89 TIGR03302 OM_YfiO outer membra 86.6 4 8.7E-05 46.4 10.5 109 58-178 34-149 (235)
90 PRK09782 bacteriophage N4 rece 86.2 3 6.5E-05 57.8 10.6 53 122-179 626-678 (987)
91 TIGR02521 type_IV_pilW type IV 85.8 5 0.00011 43.8 10.4 105 61-172 69-198 (234)
92 PF13512 TPR_18: Tetratricopep 85.5 2.2 4.9E-05 45.7 7.0 78 62-152 15-92 (142)
93 TIGR02917 PEP_TPR_lipo putativ 85.3 3.5 7.5E-05 55.0 10.5 88 67-172 169-256 (899)
94 PRK10747 putative protoheme IX 85.1 4.5 9.8E-05 50.4 10.7 85 69-172 306-390 (398)
95 CHL00033 ycf3 photosystem I as 84.8 6.2 0.00013 42.8 10.4 101 61-172 39-142 (168)
96 PRK10866 outer membrane biogen 83.9 3.7 7.9E-05 47.9 8.6 71 60-141 35-105 (243)
97 PF12688 TPR_5: Tetratrico pep 83.7 10 0.00022 39.6 10.8 95 62-171 6-103 (120)
98 TIGR00540 hemY_coli hemY prote 82.9 7.6 0.00016 48.5 11.4 104 59-181 86-190 (409)
99 PRK10049 pgaA outer membrane p 82.6 5.4 0.00012 54.1 10.6 89 65-172 57-145 (765)
100 PRK11788 tetratricopeptide rep 82.6 8.2 0.00018 47.1 11.4 95 63-172 147-243 (389)
101 PRK11447 cellulose synthase su 82.5 7.3 0.00016 55.3 12.2 38 63-107 579-616 (1157)
102 PRK11447 cellulose synthase su 82.0 5.4 0.00012 56.6 10.7 96 64-178 276-385 (1157)
103 PF13371 TPR_9: Tetratricopept 81.9 3.2 7E-05 38.2 5.8 48 122-173 12-59 (73)
104 PRK11788 tetratricopeptide rep 81.8 9.4 0.0002 46.6 11.5 42 63-107 186-227 (389)
105 PRK11906 transcriptional regul 81.5 5.2 0.00011 50.3 8.9 83 72-172 319-401 (458)
106 PRK15363 pathogenicity island 81.3 17 0.00037 39.7 11.7 93 63-173 41-133 (157)
107 COG4235 Cytochrome c biogenesi 81.0 7.8 0.00017 46.1 9.7 85 73-172 138-222 (287)
108 PF13429 TPR_15: Tetratricopep 79.4 5.5 0.00012 46.8 8.1 55 122-181 163-217 (280)
109 PRK10866 outer membrane biogen 79.3 22 0.00048 41.5 12.9 78 62-139 74-158 (243)
110 PF13429 TPR_15: Tetratricopep 79.1 5.2 0.00011 47.0 7.7 98 65-181 154-251 (280)
111 PF12874 zf-met: Zinc-finger o 78.9 1.3 2.9E-05 32.8 1.7 23 389-411 1-23 (25)
112 TIGR02552 LcrH_SycD type III s 78.0 8.7 0.00019 39.5 8.2 82 80-180 6-87 (135)
113 TIGR02917 PEP_TPR_lipo putativ 78.0 8.3 0.00018 51.5 10.1 95 56-168 21-115 (899)
114 CHL00033 ycf3 photosystem I as 77.8 13 0.00028 40.3 9.8 76 61-139 76-154 (168)
115 PF14559 TPR_19: Tetratricopep 77.2 5.4 0.00012 36.1 5.7 48 121-172 7-54 (68)
116 PLN03088 SGT1, suppressor of 77.2 10 0.00023 46.6 9.8 79 61-153 40-118 (356)
117 PRK15359 type III secretion sy 77.0 10 0.00023 40.4 8.6 78 61-152 62-139 (144)
118 PF04959 ARS2: Arsenite-resist 76.9 1.1 2.3E-05 51.2 1.0 42 374-416 60-105 (214)
119 PF13281 DUF4071: Domain of un 76.1 22 0.00048 44.1 11.9 87 63-155 185-275 (374)
120 KOG2053 Mitochondrial inherita 76.0 25 0.00055 47.1 12.9 110 52-183 4-113 (932)
121 PRK11189 lipoprotein NlpI; Pro 75.2 9 0.00019 45.8 8.3 91 71-177 40-131 (296)
122 cd05804 StaR_like StaR_like; a 75.2 13 0.00029 44.7 10.0 96 59-172 116-215 (355)
123 PHA00616 hypothetical protein 75.1 1.5 3.3E-05 37.6 1.3 25 390-414 3-27 (44)
124 PLN03098 LPA1 LOW PSII ACCUMUL 74.8 22 0.00048 44.9 11.5 69 56-135 74-142 (453)
125 KOG1126 DNA-binding cell divis 74.6 6.3 0.00014 50.9 7.0 103 70-180 434-559 (638)
126 COG1729 Uncharacterized protei 74.2 26 0.00056 41.4 11.3 86 59-155 143-231 (262)
127 COG4049 Uncharacterized protei 72.5 1.9 4.2E-05 38.4 1.3 30 387-416 16-45 (65)
128 TIGR00540 hemY_coli hemY prote 72.4 24 0.00053 44.1 11.5 98 57-172 263-364 (409)
129 COG4105 ComL DNA uptake lipopr 71.8 14 0.0003 43.3 8.4 76 61-139 75-150 (254)
130 PRK02603 photosystem I assembl 71.2 19 0.0004 39.3 9.0 74 63-139 78-154 (172)
131 PF05605 zf-Di19: Drought indu 71.2 2.7 5.9E-05 37.5 2.0 25 390-415 4-28 (54)
132 TIGR02795 tol_pal_ybgF tol-pal 70.7 11 0.00024 37.3 6.5 68 62-140 44-111 (119)
133 PF14863 Alkyl_sulf_dimr: Alky 69.7 22 0.00048 38.2 8.8 66 59-127 72-137 (141)
134 PRK10747 putative protoheme IX 68.0 38 0.00083 42.3 11.8 108 62-178 158-296 (398)
135 PF12171 zf-C2H2_jaz: Zinc-fin 67.8 2.4 5.2E-05 32.3 0.8 22 389-410 2-23 (27)
136 COG4105 ComL DNA uptake lipopr 67.6 15 0.00031 43.2 7.3 71 62-143 39-109 (254)
137 PF13174 TPR_6: Tetratricopept 67.5 6 0.00013 30.5 3.0 27 64-90 7-33 (33)
138 KOG2610 Uncharacterized conser 67.4 19 0.00041 43.4 8.3 99 64-181 110-212 (491)
139 KOG0553 TPR repeat-containing 67.0 23 0.00051 42.3 8.9 89 66-172 90-178 (304)
140 smart00355 ZnF_C2H2 zinc finge 66.9 3.7 8E-05 29.7 1.7 24 389-413 1-24 (26)
141 PF12756 zf-C2H2_2: C2H2 type 66.8 3.8 8.2E-05 40.1 2.2 25 388-412 50-74 (100)
142 KOG0624 dsRNA-activated protei 66.0 64 0.0014 39.3 12.1 101 53-171 34-134 (504)
143 PF13431 TPR_17: Tetratricopep 64.7 6 0.00013 31.9 2.6 33 127-163 1-33 (34)
144 PRK10153 DNA-binding transcrip 64.6 82 0.0018 41.0 14.1 91 73-173 358-450 (517)
145 PF13913 zf-C2HC_2: zinc-finge 61.8 4.7 0.0001 30.5 1.3 18 390-408 4-21 (25)
146 COG4235 Cytochrome c biogenesi 60.9 60 0.0013 38.9 10.9 99 66-182 165-266 (287)
147 PF13912 zf-C2H2_6: C2H2-type 60.6 4.8 0.0001 30.4 1.3 22 390-411 3-24 (27)
148 PF03704 BTAD: Bacterial trans 60.6 82 0.0018 33.1 11.1 118 54-172 3-132 (146)
149 KOG2002 TPR-containing nuclear 60.0 26 0.00056 47.5 8.3 112 56-182 163-274 (1018)
150 KOG2076 RNA polymerase III tra 59.8 73 0.0016 43.1 12.2 120 52-200 411-530 (895)
151 PF09976 TPR_21: Tetratricopep 58.5 81 0.0018 33.4 10.6 100 55-170 46-145 (145)
152 PLN03098 LPA1 LOW PSII ACCUMUL 58.1 23 0.0005 44.7 7.1 69 87-173 71-142 (453)
153 COG5010 TadD Flp pilus assembl 58.0 63 0.0014 38.0 10.1 123 64-210 73-196 (257)
154 KOG4234 TPR repeat-containing 57.6 1.4E+02 0.0031 34.2 12.2 99 66-181 104-202 (271)
155 PRK14574 hmsH outer membrane p 57.3 45 0.00097 45.8 10.3 34 57-90 34-67 (822)
156 KOG0548 Molecular co-chaperone 56.1 59 0.0013 41.7 10.1 90 65-172 366-455 (539)
157 PHA02768 hypothetical protein; 56.0 6.3 0.00014 35.6 1.4 23 390-413 7-29 (55)
158 PF13428 TPR_14: Tetratricopep 55.6 21 0.00046 30.0 4.5 35 64-101 8-42 (44)
159 KOG1125 TPR repeat-containing 55.3 19 0.00041 46.2 5.8 85 70-172 443-527 (579)
160 PRK10153 DNA-binding transcrip 55.0 57 0.0012 42.5 10.3 52 122-179 437-488 (517)
161 KOG0547 Translocase of outer m 54.9 52 0.0011 41.8 9.2 84 72-173 409-492 (606)
162 KOG1173 Anaphase-promoting com 54.7 46 0.001 42.8 8.9 56 122-182 363-418 (611)
163 PLN02789 farnesyltranstransfer 53.6 71 0.0015 39.0 10.3 89 69-172 49-137 (320)
164 KOG0376 Serine-threonine phosp 53.1 7.9 0.00017 48.6 2.1 55 115-173 14-68 (476)
165 PF13945 NST1: Salt tolerance 51.6 12 0.00026 42.0 3.0 31 329-359 102-132 (190)
166 COG2956 Predicted N-acetylgluc 51.2 57 0.0012 39.6 8.4 88 71-171 155-242 (389)
167 PF05408 Peptidase_C28: Foot-a 51.1 7.3 0.00016 43.1 1.2 37 1578-1616 133-171 (193)
168 PLN02789 farnesyltranstransfer 51.0 89 0.0019 38.2 10.5 88 69-172 83-171 (320)
169 PRK14574 hmsH outer membrane p 49.4 68 0.0015 44.1 10.1 107 58-183 417-523 (822)
170 PF09237 GAGA: GAGA factor; I 49.3 13 0.00027 33.2 2.1 26 389-414 25-50 (54)
171 PF05408 Peptidase_C28: Foot-a 49.3 14 0.00029 41.1 2.9 22 1301-1324 34-55 (193)
172 PRK11906 transcriptional regul 48.8 1.6E+02 0.0034 37.7 12.2 114 55-179 253-373 (458)
173 KOG0550 Molecular chaperone (D 48.3 84 0.0018 39.3 9.4 110 57-173 169-317 (486)
174 PF06552 TOM20_plant: Plant sp 46.9 1.3E+02 0.0027 34.0 9.8 60 76-138 54-113 (186)
175 KOG4162 Predicted calmodulin-b 46.7 1.1E+02 0.0024 40.9 10.7 137 73-225 410-548 (799)
176 PRK10803 tol-pal system protei 46.5 70 0.0015 38.0 8.5 64 65-139 188-251 (263)
177 cd00189 TPR Tetratricopeptide 44.5 1.8E+02 0.0039 25.7 9.4 52 122-178 17-68 (100)
178 PF05605 zf-Di19: Drought indu 44.3 13 0.00028 33.2 1.5 42 352-412 12-53 (54)
179 PF06552 TOM20_plant: Plant sp 42.9 1.8E+02 0.0039 32.8 10.2 94 75-172 9-109 (186)
180 COG1592 Rubrerythrin [Energy p 42.5 20 0.00044 39.5 3.0 27 371-400 120-146 (166)
181 KOG4626 O-linked N-acetylgluco 40.8 50 0.0011 42.9 6.2 82 73-172 268-349 (966)
182 PRK14720 transcript cleavage f 40.1 2.2E+02 0.0048 39.5 12.5 112 65-187 38-160 (906)
183 PF13424 TPR_12: Tetratricopep 39.4 54 0.0012 30.5 5.0 71 94-172 5-75 (78)
184 PHA00733 hypothetical protein 38.9 18 0.00038 38.3 1.8 25 389-413 100-124 (128)
185 KOG4626 O-linked N-acetylgluco 38.1 2.9E+02 0.0062 36.5 12.0 74 122-203 439-518 (966)
186 KOG4340 Uncharacterized conser 37.1 1.9E+02 0.004 34.9 9.6 84 65-166 18-101 (459)
187 smart00451 ZnF_U1 U1-like zinc 36.0 25 0.00054 28.0 1.8 23 389-411 4-26 (35)
188 KOG3060 Uncharacterized conser 34.3 2.5E+02 0.0054 33.4 10.0 107 67-181 62-191 (289)
189 KOG4642 Chaperone-dependent E3 34.0 2E+02 0.0044 33.8 9.1 102 117-223 56-167 (284)
190 KOG0543 FKBP-type peptidyl-pro 33.8 5.4E+02 0.012 32.4 13.3 99 65-173 216-321 (397)
191 KOG0547 Translocase of outer m 33.1 1.6E+02 0.0034 37.8 8.7 84 70-172 339-423 (606)
192 PF12756 zf-C2H2_2: C2H2 type 32.5 15 0.00032 35.8 0.0 25 391-415 2-26 (100)
193 PF12907 zf-met2: Zinc-binding 32.3 13 0.00027 31.6 -0.5 26 390-415 3-31 (40)
194 KOG1127 TPR repeat-containing 32.2 1.9E+02 0.0041 40.0 9.6 102 58-173 3-104 (1238)
195 KOG1126 DNA-binding cell divis 32.1 1.8E+02 0.004 38.3 9.4 97 65-183 531-627 (638)
196 COG4783 Putative Zn-dependent 31.3 4.8E+02 0.01 33.6 12.5 95 67-172 350-454 (484)
197 PF04733 Coatomer_E: Coatomer 31.1 2.2E+02 0.0047 34.4 9.4 94 63-172 137-230 (290)
198 KOG4642 Chaperone-dependent E3 31.1 63 0.0014 37.8 4.6 51 118-172 23-73 (284)
199 KOG4648 Uncharacterized conser 28.8 52 0.0011 39.9 3.5 61 97-172 100-160 (536)
200 PF01927 Mut7-C: Mut7-C RNAse 28.2 26 0.00056 37.8 0.9 12 388-399 124-135 (147)
201 PF00515 TPR_1: Tetratricopept 27.6 90 0.002 24.3 3.7 34 94-138 1-34 (34)
202 PF04733 Coatomer_E: Coatomer 27.0 2.6E+02 0.0056 33.7 9.1 110 55-182 164-274 (290)
203 PF09295 ChAPs: ChAPs (Chs5p-A 26.6 2.8E+02 0.0061 35.0 9.6 82 70-172 182-263 (395)
204 PF02891 zf-MIZ: MIZ/SP-RING z 26.5 18 0.0004 32.0 -0.4 11 386-396 39-49 (50)
205 PF12569 NARP1: NMDA receptor- 26.4 2.6E+02 0.0056 36.6 9.5 87 62-166 199-285 (517)
206 KOG1174 Anaphase-promoting com 26.2 2.4E+02 0.0053 35.5 8.5 87 67-171 310-396 (564)
207 PF15297 CKAP2_C: Cytoskeleton 26.2 18 0.00039 44.1 -0.7 54 333-392 81-146 (353)
208 KOG1840 Kinesin light chain [C 26.0 4.8E+02 0.01 34.1 11.7 142 65-213 249-398 (508)
209 PF12688 TPR_5: Tetratrico pep 25.8 3.2E+02 0.007 28.7 8.4 51 57-107 38-88 (120)
210 KOG1173 Anaphase-promoting com 25.2 3.4E+02 0.0073 35.5 9.8 92 58-172 427-518 (611)
211 PF14561 TPR_20: Tetratricopep 25.2 3.8E+02 0.0082 26.6 8.4 46 123-172 6-51 (90)
212 KOG0548 Molecular co-chaperone 24.5 3.1E+02 0.0067 35.6 9.3 82 55-150 390-471 (539)
213 PHA00732 hypothetical protein 24.4 43 0.00094 32.6 1.6 24 390-413 3-26 (79)
214 PF02892 zf-BED: BED zinc fing 23.7 50 0.0011 28.0 1.7 30 384-413 12-45 (45)
215 PF07719 TPR_2: Tetratricopept 23.5 1.1E+02 0.0023 23.6 3.4 33 95-138 2-34 (34)
216 COG2956 Predicted N-acetylgluc 23.4 8.2E+02 0.018 30.3 11.9 110 58-187 181-291 (389)
217 PF02099 Josephin: Josephin; 23.1 87 0.0019 34.4 3.8 29 1574-1604 99-127 (157)
218 KOG4279 Serine/threonine prote 22.9 95 0.0021 41.2 4.5 80 69-155 255-336 (1226)
219 PF12895 Apc3: Anaphase-promot 22.8 1.2E+02 0.0025 28.9 4.2 41 64-108 32-72 (84)
220 PF02259 FAT: FAT domain; Int 22.5 5.5E+02 0.012 30.8 11.0 99 56-154 183-307 (352)
221 PF13226 DUF4034: Domain of un 22.1 2.1E+02 0.0046 34.3 7.0 65 76-143 62-137 (277)
222 KOG1125 TPR repeat-containing 22.1 3.4E+02 0.0075 35.5 9.1 80 60-153 288-367 (579)
223 KOG1127 TPR repeat-containing 21.6 1.6E+03 0.034 31.9 15.0 47 122-172 509-555 (1238)
224 KOG2376 Signal recognition par 20.8 2.5E+02 0.0054 36.8 7.5 38 122-166 96-133 (652)
225 PF09986 DUF2225: Uncharacteri 20.4 4.8E+02 0.01 30.1 9.3 70 99-172 116-194 (214)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=1.5e-126 Score=1131.23 Aligned_cols=463 Identities=47% Similarity=0.747 Sum_probs=440.1
Q ss_pred HHHHHhccCCHHHHhceeEeehHHHHHHhhhccCchhHHHHHHHHHHHHhcCceeEEecccchhccCChhHHHHhhhhhh
Q 000342 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 333 ~vr~yW~~m~~e~kr~fL~V~i~~L~~~~~~~~~~~~~~~ls~al~fak~n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
+||+||++|++|+||+||+|+|++|++||.+++++.++++|++||+|||+|++|+|||||+|+++|+++++|++||+++|
T Consensus 2 ~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 2 RVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred chhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCcCHHHHhhhhcCCcccccHHHHHHHhccccccccccccccccccCCccccccccccccCCCCccc
Q 000342 413 MGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPEK 492 (1634)
Q Consensus 413 ~~~~~P~l~~~~p~~i~~~w~~~i~~~~W~Pvd~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~c~kd~~~~~~~~ 492 (1634)
+++++|++++++||+|+++|++||.+|+|+|||++||++||||+++++++ |+ + |
T Consensus 82 ~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~--~~----~-----------~--------- 135 (466)
T PF04780_consen 82 PAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS--FV----Y-----------K--------- 135 (466)
T ss_pred hhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch--hh----h-----------h---------
Confidence 99999999999999999999999999999999999999999999999984 22 2 3
Q ss_pred ccccCCCCCCccCCCCccccccccccccCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCcccchhhhhHh
Q 000342 493 ENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVI 572 (1634)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Wpl~~d~er~klL~~I~~~~~~l~~~k~ls~s~~~~vi 572 (1634)
|| |+.+ ||||+|+||+|||++||.+|++|++||||||||++|||
T Consensus 136 -------~g------------------w~~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi 179 (466)
T PF04780_consen 136 -------NG------------------WSKD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVI 179 (466)
T ss_pred -------cC------------------CCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 33 3344 99999999999999999999999999999999999999
Q ss_pred hccHHHhhhhccccc-cccCccCCCcchhhccchhhHHHHHHHHHHHhhhhcCCccCccccccccCCCCCCcccceeeee
Q 000342 573 QYTMDELQSLASGSL-LLNHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIV 651 (1634)
Q Consensus 573 ~~t~~~l~~~~s~~~-l~~~~l~~tp~~icfL~~~~L~~il~fl~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~vke~i~ 651 (1634)
+||++|||+|+++.+ |.||||++||||||||+|++|++||+||++|+ | .|+.+++.+++++++|+++++|||+|+
T Consensus 180 ~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI~ 255 (466)
T PF04780_consen 180 QFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKID 255 (466)
T ss_pred HhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceeee
Confidence 999999999996555 55999999999999999999999999999999 7 466777889999999999999999999
Q ss_pred ccCCcchhhhhhhhhhccccCCCcccccccccccccCCCCccCcCceeeeeccCCCCCcccccccchHHHhhhhhhhHHH
Q 000342 652 LNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQ 731 (1634)
Q Consensus 652 ~~~~~s~LllD~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~D~~~sWl~~~~s~~~~~~sw~~~~e~~~~~~~~vl~ 731 (1634)
||+|+|+||||+|||++++.+++++|+|.++.|++||++++|+||+||||||+||+++++|++|+++|+++++|||+|||
T Consensus 256 ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~ 335 (466)
T PF04780_consen 256 LDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLR 335 (466)
T ss_pred cCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999996655999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHhhccccccccccccchhh
Q 000342 732 TLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAI 811 (1634)
Q Consensus 732 ~~~~~~~~l~~~~~kk~~~l~~~~~l~~ve~~c~~E~~~r~~~~~~~~~~y~s~l~~~~e~l~~~~~~~~~~~~~~~~~i 811 (1634)
+|++||++|+++|+|||+||+||+||++||+||++|++||+++++|||++|||+||+|||||+++++|+|+++|+|+|||
T Consensus 336 ~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v 415 (466)
T PF04780_consen 336 AVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAV 415 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCCCCccccccCcccccccccCCCCCCcccccccccchhHHHHH
Q 000342 812 LNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1634)
Q Consensus 812 ~~vl~~~~~~~~~~f~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~v~~~ 866 (1634)
+|||++|++ |+|+|.+..+| +++|+|+++++.|| ++++++|+.|++|+.+
T Consensus 416 ~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 416 RDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 999999999 78888886666 67799999999988 9999999999988743
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-83 Score=777.09 Aligned_cols=775 Identities=26% Similarity=0.387 Sum_probs=643.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCcccchhhhhHhhccHHHhhhhc-cccccccCccCCCcchhhccchhhHHHHHH
Q 000342 535 WPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNHGVGQTPMCICFLGVHQLRKIVK 613 (1634)
Q Consensus 535 Wpl~~d~er~klL~~I~~~~~~l~~~k~ls~s~~~~vi~~t~~~l~~~~-s~~~l~~~~l~~tp~~icfL~~~~L~~il~ 613 (1634)
||++.|++|+++|++|+.++++++.+||++|++++|+|.||+.||..+. |.+.+ .++++.|||+||||++..|.+|++
T Consensus 2 ~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~sir~~~m~~p~~~l~~~~~Seh~~-~~~~v~t~qs~~~le~~~l~~i~~ 80 (806)
T KOG1887|consen 2 WPLAEDEERSKLAKEIKLLLVSFCDRKILSCSIRDWLMGFPVKHLGQLEVSEHSL-DSRLVETPQSICFLENPELYQVLD 80 (806)
T ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhhhccCcccchhhcCCHHHhccceeccccc-chhhhcccchhhhhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 88888 999999999999999999999999
Q ss_pred HHHHHhhhhcCCccCccccccccCCCCCCcccceeeeeccCCcchhhhhhhhhhccccCCCccccccccc-ccccCCCCc
Q 000342 614 FLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSA-NIRHENGVA 692 (1634)
Q Consensus 614 fl~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~vke~i~~~~~~s~LllD~~ll~~~~~~~~~~~~i~~~~-~~~~~~~~~ 692 (1634)
|+.-++ | .|++++++++.++++++..+.++++|+||.++++|++|++++.++...++++|+| +|| |++||.+..
T Consensus 81 ~~~~~~--~--~~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~~~~~g~~-n~~~p~~~~~~~~ 155 (806)
T KOG1887|consen 81 FLKKIK--C--QRNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNRFDDEGTI-NVFDPEAHYAKTK 155 (806)
T ss_pred HHHhhc--c--ccccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCccccCCCcc-cccCchHhhhhhh
Confidence 999888 7 7999999999999999999999999999999999999999999999999999998 888 999999999
Q ss_pred cCcCceeeeeccCCCCCcccccccchHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhhhhhccc
Q 000342 693 EDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRE 772 (1634)
Q Consensus 693 ~~~D~~~sWl~~~~s~~~~~~sw~~~~e~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~~~~~l~~ve~~c~~E~~~r~ 772 (1634)
.++|.+++||.++.+.+..| ++++|++++++||++++++++||+.+.+.|++|+.++.|.+|++.++++|++||+||+
T Consensus 156 ~~~d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~ 233 (806)
T KOG1887|consen 156 SQLDDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRK 233 (806)
T ss_pred hhcchhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhh
Confidence 99999999999988888886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhccccccccccccchhhHhHHHHHhhhccCCCCccccccCcccccccccCCCCCCccc
Q 000342 773 TVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRN 852 (1634)
Q Consensus 773 ~~~~~~~~~y~s~l~~~~e~l~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~f~~~e~~~~~~~~~~d~~~~~~~~~~~ 852 (1634)
+.+++||..||+++++.|+|-+-.+. +..+.++++|++||..+.. |+|.|.+..+|++. +
T Consensus 234 n~~~dq~~~y~~~~~~~~qe~~~~~~---~~~~~~~~~v~d~~~~~s~---p~~~~~~~~~c~N~--------------~ 293 (806)
T KOG1887|consen 234 NKPEDQWLEYEQLLLDSCQEQQIEQS---LQTKLFLCAVRDVLEGASS---PTFAFADASDCLNL--------------I 293 (806)
T ss_pred cchHHHHHHHHHhchHHHHHHHHHhh---hhhhhHHHHHHhhhccccC---CCCCccchHhhcch--------------h
Confidence 99999999999999999999774433 8899999999999999999 99999999999999 7
Q ss_pred ccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhchhhHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000342 853 KDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDAT 932 (1634)
Q Consensus 853 ~~~~~~~d~~v~~~i~~~k~~~~~~~~~id~~i~~~~~~~~~l~~~l~~~s~~dyr~~ilpl~k~~l~~~L~~~~~~da~ 932 (1634)
+.|.+.+|+.|..+|..||+.++.+++++|++|+.+..+++.|.+.|.++++||||++++.++|.|+ ++++++|..+
T Consensus 294 ~~~~~~~~~~~~~~i~~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~---~~e~k~~~~k 370 (806)
T KOG1887|consen 294 REHKQEKDDAVLPSIDLLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL---LDEIKNMEKK 370 (806)
T ss_pred hhccccccceecCCcchhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh---hhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7777889989
Q ss_pred hhhHHHHHHHHHHHhhhhhhhccCCCCCCcCcccchhhhhhhhhhhcccCCCCCCCCCcceecccccCccCCccCCCCCC
Q 000342 933 EKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVSFPVESDGDN 1012 (1634)
Q Consensus 933 ~~~~a~~~a~~ael~l~~~k~~~~~~~~~~~~~~k~k~kkk~k~~rk~kd~k~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1634)
+|++++ .|+|+-+.+|.+.. |+.+|||+ .+-.|.++
T Consensus 371 ~k~~~~----~~~l~~e~ek~~~~----------~~~~~~k~-----~~~~~~~s------------------------- 406 (806)
T KOG1887|consen 371 AKKDLA----EADLLSELEKEKPS----------KHQSKKKK-----QGSNKRTS------------------------- 406 (806)
T ss_pred hhhhhh----hhhhhhHHHHhhhc----------cccccccc-----cccccCcc-------------------------
Confidence 988855 77887666665421 11122211 12233333
Q ss_pred CCCCcccccCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhhHHHhhccccccccCccccccccCcCCCC
Q 000342 1013 PDSETVVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCDTYLGHG 1092 (1634)
Q Consensus 1013 ~~~~~~~s~~~~~~~~~e~~~~~~~~~~~ee~k~~~~~~~qr~~~~~~~~kh~~e~~~k~~~~~~~~~~~~~~~~~~~~~ 1092 (1634)
.+++.+..+.-| ++.+
T Consensus 407 ------~~~ss~l~~~~~---------------------------------------~~~~------------------- 422 (806)
T KOG1887|consen 407 ------TSKSSLLDKTVE---------------------------------------HKHS------------------- 422 (806)
T ss_pred ------cccCCccccccc---------------------------------------cccc-------------------
Confidence 222222222100 1221
Q ss_pred CCCcccccccccCCcccccccCCCCCCCCCCCcccCCCCccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q 000342 1093 SNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTPVNTANGAAVPIRSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTD 1172 (1634)
Q Consensus 1093 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1634)
..+++.++ +...+++.+|.|.+++
T Consensus 423 ---------------~~l~~~~s-----------------------------------------~~s~~~~~e~s~~~~~ 446 (806)
T KOG1887|consen 423 ---------------HGLEPYSS-----------------------------------------SPSLGKSEEGSMEPED 446 (806)
T ss_pred ---------------cccCCCCC-----------------------------------------ccccccccCCcccccc
Confidence 12333322 2236778899999999
Q ss_pred CcCCCCcccccCCCcCccccccccCcccccccccCCCcccccccCCCCCCCCCc--cccccccccchhHhhhHHHHHHHH
Q 000342 1173 RRTGRRGRRHRSSNRSQDWKNQALSSEKENIGVRSDDSHLTGAAAPYLGDGGTK--TLRQLHAEEDDEERFQADLKQAVR 1250 (1634)
Q Consensus 1173 ~~~g~~~~r~~~s~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~~~~~~~~~l~~a~~ 1250 (1634)
...++.|..+.++ ++.|++ ++++ ++..|++++
T Consensus 447 ~~~~e~g~le~s~-------------~~~~q~------------------e~~k~~~~~~~p~e~--------------- 480 (806)
T KOG1887|consen 447 GLSNENGNLEISS-------------NTRNQE------------------EATKDPDMKNMPPED--------------- 480 (806)
T ss_pred cccCCCcchhhcc-------------cccchh------------------hcccCcccccCCCcc---------------
Confidence 9999999999999 777773 2222 244444444
Q ss_pred hhhhhhhccccCccccccccccccccccccccccccccccccCCCccccCcCccCCCCCCcccchHHHHH----HHhhHH
Q 000342 1251 QSLDTFQAHQKMPLVSSLRMTQNVSLEANKVAVLSNEVRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQS----LWHLRR 1326 (1634)
Q Consensus 1251 ~S~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~p~s~~~~~~s~~gs~i~~~GL~NlG~~NTCYLNSVLQ~----L~hlp~ 1326 (1634)
+. .+...+..+ | -.|-.|+.+++ |+++..
T Consensus 481 -~~---------------------------------s~~~e~~~~-----------~--~~~~~~saldm~lk~~~n~~i 513 (806)
T KOG1887|consen 481 -SR---------------------------------SSHTESAIG-----------G--AAARYNSALDMTLKALLNIKV 513 (806)
T ss_pred -cc---------------------------------ccccccccc-----------c--ccceehhHHHHHHHHhhhhhh
Confidence 11 111111111 1 24555555554 455555
Q ss_pred HHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHH
Q 000342 1327 FREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFD 1406 (1634)
Q Consensus 1327 FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD 1406 (1634)
|.+.++....+... .++.++|+.+| +.+..+......++.++|..+|.
T Consensus 514 ~~e~l~~~~q~~~~----~~vp~al~~~~----------------------------~~s~~~~~~~~~~~S~lL~~ll~ 561 (806)
T KOG1887|consen 514 LKEDLLKNRQPLVA----LQVPIALQNFF----------------------------PASVSESIKHEGVYSELLSDLLL 561 (806)
T ss_pred hhcccccccchhcc----ccCcchhhhcC----------------------------CcchHHHHHhhhhHHHHHHHHHh
Confidence 55444443322111 13344444443 33222344455667778888888
Q ss_pred HHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceeecccchhhhhhhhhc
Q 000342 1407 CLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMC 1486 (1634)
Q Consensus 1407 ~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~ 1486 (1634)
.|+..........+...........|.+....++++++|+.....++.|..|+..++.+++++|++++.++.++..+.++
T Consensus 562 ~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~ 641 (806)
T KOG1887|consen 562 SLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAF 641 (806)
T ss_pred hhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHh
Confidence 88777655422222111112223348888889999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCeEEEEEEeecCCcccccccccccccccccccccccc-C
Q 000342 1487 AESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYR-G 1565 (1634)
Q Consensus 1487 ~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf~~~~~~~KI~~~v~~fp~~LDLs~f~~-g 1565 (1634)
++.+|++.|+...++.++.||...+|||+.+.+++.|.++|+|++|.|.|... ++...|..+...+.+++|++..|+ |
T Consensus 642 ~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~teidis~~y~~g 720 (806)
T KOG1887|consen 642 QNITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFTIVLEWEKS-ETEKEISETTKALATEIDISRLYREG 720 (806)
T ss_pred hhhhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHhhhhHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999876 777889999999999999999995 8
Q ss_pred CCCCCcEEEEEEEEEe--CceEEEEEEeCCCCcEE--EEcCCceEEeCChhhhhhhccCCCCceEEEEEEe
Q 000342 1566 LDPKRRHSLVSVVCYY--GQHYHCFAYSHDQERWI--MYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEA 1632 (1634)
Q Consensus 1566 ~~~~~~Y~L~AVV~H~--GGHYtAyVR~~~~~kW~--~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeR 1632 (1634)
.++.++|+|++||+.+ |++|+|+++ ..++|+ +.+|..+..|+.|.+|+++|++.+.+|.||||++
T Consensus 721 ~ep~t~yrLVSmv~~~e~~~~~~C~Ay--e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 721 LEPNTKYRLVSMVGNHEEGEEYICFAY--EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEA 789 (806)
T ss_pred cCcCceeEEEEEeeeccccceEEEeec--cCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHH
Confidence 8999999999999988 699999999 678888 9999999999999999999999999999999986
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-48 Score=464.19 Aligned_cols=294 Identities=22% Similarity=0.388 Sum_probs=247.2
Q ss_pred CCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcH
Q 000342 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1634)
Q Consensus 1294 ~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~ 1373 (1634)
......++||.|+| ||||+|||||||.++||+.+||+...+....+....|++|+++.++..-..+ .+.+++|.
T Consensus 102 ~~~~~~~~GL~NlG--NtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~----~g~pisP~ 175 (545)
T KOG1865|consen 102 DRPAAVGAGLQNLG--NTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHN----PGHPISPS 175 (545)
T ss_pred cccccCCcceecCC--ccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcC----CCCccChH
Confidence 34556789999999 8999999999999999999999998876555667889999999887655433 45699999
Q ss_pred HHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEE
Q 000342 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERM 1453 (1634)
Q Consensus 1374 ~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i 1453 (1634)
.|+..|..+..+ |..|.|.||||||+++||.|+..+.......+. .....++|+++|||.+++++
T Consensus 176 ~i~s~L~~I~~~---f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~------------~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 176 QILSNLRNISAH---FGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDP------------RSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred HHHHhhhhhccc---ccCCchhhHHHHHHHHHHHHHHhhcCCCccCCc------------ccccceehhhhhccchhhce
Confidence 999999998776 999999999999999999999987533221111 11247899999999999999
Q ss_pred eccCCCcccccccccceeecccchhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCCCccc--eEEEEeec
Q 000342 1454 NCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLN--YIHHILST 1525 (1634)
Q Consensus 1454 ~C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c~~Cgk~~--~kq~~Isr 1525 (1634)
+|..|..+|.+ |+.++++ .+. +. ...+++++|+.|. +++.|.|+ +|+++. .|+.+|.+
T Consensus 241 kC~~C~~vS~t--yE~~~dl-tve-i~------d~~sl~~AL~qFt~~E~L~gen~Y~C~----~Ck~~v~A~K~lti~r 306 (545)
T KOG1865|consen 241 KCLHCKGVSDT--YEPYLDL-TLE-IQ------DASSLQQALEQFTKPEKLDGENAYHCG----RCKQKVPASKQLTIHR 306 (545)
T ss_pred ecccCCCcccc--cccccce-EEE-ec------cchhHHHHHHHhhhHHhhCCccccccc----hhhhhCcccceeeeec
Confidence 99999999998 7777754 211 11 1268889998886 46778886 698884 57899999
Q ss_pred cCCeEEEEEEeecCCccccccccccccccccccccccccCC-CCCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEE
Q 000342 1526 PPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIM 1599 (1634)
Q Consensus 1526 LP~VLiIhLkrf~~~~~~~KI~~~v~~fp~~LDLs~f~~g~-~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~ 1599 (1634)
+|+||+|||+||.. .+..||.+.|. ||+.|||.+|+.+. +..+.|.|||||+|.| |||+||||.. +|.||.
T Consensus 307 aPnVLTi~LKRF~~-~~~gKI~K~I~-fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~ 383 (545)
T KOG1865|consen 307 APNVLTLHLKRFSN-GTGGKISKPVS-FPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYK 383 (545)
T ss_pred CCceEEEeeehhcc-CcccccccccC-CcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcC-CCceEE
Confidence 99999999999988 77789999987 99999999999854 3568999999999999 9999999964 689999
Q ss_pred EcCCceEEeCChhhhhhhccCCCCceEEEEEEe
Q 000342 1600 YDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEA 1632 (1634)
Q Consensus 1600 FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeR 1632 (1634)
|||+.|+.++. +.|++ .+||||||.|
T Consensus 384 ~DDS~V~~~~~-~~VLs------q~AYmLfY~R 409 (545)
T KOG1865|consen 384 MDDSEVTQSSI-ESVLS------QQAYILFYAR 409 (545)
T ss_pred ccCceeeeccc-cceec------ccceEEEEEe
Confidence 99999999998 88999 8999999997
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-44 Score=418.56 Aligned_cols=280 Identities=20% Similarity=0.345 Sum_probs=219.3
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~~ 1381 (1634)
||.|+| |||||||+||+|+| .+++++|+.||..|+.... ...+++|..|+.+|+.
T Consensus 1 Gl~NlG--nTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~--~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFG--NTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKK--RTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCC--cceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCC--CCeeECHHHHHHHHHh
Confidence 899999 79999999999998 2789999999999996522 4568999999999988
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000342 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1634)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~ 1461 (1634)
..+. |..++||||||||..|||.||+++.........+ .............++|.++|+|++.++++|..|+..
T Consensus 56 ~~~~---f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~ 129 (300)
T cd02663 56 ENEL---FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN---RKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV 129 (300)
T ss_pred hcCC---CCCCccccHHHHHHHHHHHHHHHHHHHhhccccc---ccccccccCCcCCCChhhhCceEEEeeEEeCCCCCC
Confidence 7665 9999999999999999999999987542211100 000001112234688999999999999999999999
Q ss_pred cccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCCCcc--ceEEEEeeccCCeEEE
Q 000342 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTT 1532 (1634)
Q Consensus 1462 S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~~Cgk~--~~kq~~IsrLP~VLiI 1532 (1634)
+.+ +++|+.+ ++.. ...+|+++|+.|+..+ .|.|+ .|+++ ..++..|.++|+||+|
T Consensus 130 s~~--~e~f~~Lsl~i~---------~~~sl~~~L~~~~~~E~l~~~~~~~C~----~C~~~~~a~k~~~i~~lP~vLii 194 (300)
T cd02663 130 SSR--DETFLDLSIDVE---------QNTSITSCLRQFSATETLCGRNKFYCD----ECCSLQEAEKRMKIKKLPKILAL 194 (300)
T ss_pred ccc--cceeEEeccCCC---------CcCCHHHHHHHhhcccccCCCCcEECC----CCCCceeEEEEEEeccCCceeEE
Confidence 877 5666643 2221 2368999999987554 46675 57765 4567889999999999
Q ss_pred EEEeecCCc---ccccccccccccccccccccccc-CCCCCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCC
Q 000342 1533 VLGWQNTCE---SFDDITATLAALSPEIDISILYR-GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDK 1603 (1634)
Q Consensus 1533 hLkrf~~~~---~~~KI~~~v~~fp~~LDLs~f~~-g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs 1603 (1634)
||+||.... ...|+...+. ||..|||..+.. ...+...|+|+|||+|.| |||+||+|. +++||+|||+
T Consensus 195 ~LkRF~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~ 271 (300)
T cd02663 195 HLKRFKYDEQLNRYIKLFYRVV-FPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDE 271 (300)
T ss_pred EEEeEEeecccCCceecCceEe-cCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCC
Confidence 999886543 2467777765 999999986643 233457999999999999 999999994 8999999999
Q ss_pred ceEEeCChhhhhhhccC--CCCceEEEEEE
Q 000342 1604 TVKVVGSWSDVLSMCER--GHLQPQVLFFE 1631 (1634)
Q Consensus 1604 ~Vt~Vs~weeVLs~~~~--~~~qpYILFYe 1631 (1634)
.|+.++. ++|...++. +..+||||||+
T Consensus 272 ~V~~~~~-~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 272 TVEKIDE-NAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred ceEEcCH-HHHHHhcCCCCCCCceEEEEeC
Confidence 9999986 888875543 46789999996
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-43 Score=417.28 Aligned_cols=299 Identities=23% Similarity=0.366 Sum_probs=229.0
Q ss_pred cCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC--CCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHH
Q 000342 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1634)
Q Consensus 1301 ~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~--~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~a 1378 (1634)
+||.|+| |||||||+||+|+|+|+||++|+...... .......|+.|+|+.+|..|+... ....+.|..|+.+
T Consensus 1 rGl~N~g--ntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~~~~l~~ 75 (328)
T cd02660 1 RGLINLG--ATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG---DRSPYGPINLLYL 75 (328)
T ss_pred CCccccC--cchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC---CCCCcCHHHHHHH
Confidence 6999999 79999999999999999999999865432 233445689999999999996331 3567899999999
Q ss_pred HhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCC
Q 000342 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1634)
Q Consensus 1379 L~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1634)
++...+. |.++.||||||||.+|||.||+++........ ......++|+++|+|.+.++++|..|
T Consensus 76 ~~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~------------~~~~~~~~i~~~F~g~~~~~~~C~~C 140 (328)
T cd02660 76 SWKHSRN---LAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN------------DESHCNCIIHQTFSGSLQSSVTCQRC 140 (328)
T ss_pred HHhhchh---hcccccccHHHHHHHHHHHHHHHhhccccccc------------ccccCCceeEEecccEEEeeeEcCCC
Confidence 8876554 88999999999999999999998765422100 00112578999999999999999999
Q ss_pred Ccccccccccceeec-ccchhhhhh------hhhcccCCHHHHHHHHhcccccccC-CCCCCCCccc--eEEEEeeccCC
Q 000342 1459 GLESRHLKYTSFFHN-INASALRTM------KVMCAESSLDELLNLVEMNHQLACD-PGAGGCEKLN--YIHHILSTPPH 1528 (1634)
Q Consensus 1459 ~~~S~~~~~~sf~~l-I~~~~l~~~------k~~~~~~SLedlLk~~~~~e~~~Cd-~~c~~Cgk~~--~kq~~IsrLP~ 1528 (1634)
++.+.. +++|+.+ ++....... .......+|+++|+.++..+.+.-. ..|..|+++. .++..|.++|+
T Consensus 141 ~~~s~~--~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 218 (328)
T cd02660 141 GGVSTT--VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPP 218 (328)
T ss_pred CCccce--ecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCc
Confidence 999887 4555543 222111000 0012347999999998865543211 1234688774 45778999999
Q ss_pred eEEEEEEeecCCc--cccccccccccccccccccccccC----------CCCCCcEEEEEEEEEeC----ceEEEEEEeC
Q 000342 1529 VFTTVLGWQNTCE--SFDDITATLAALSPEIDISILYRG----------LDPKRRHSLVSVVCYYG----QHYHCFAYSH 1592 (1634)
Q Consensus 1529 VLiIhLkrf~~~~--~~~KI~~~v~~fp~~LDLs~f~~g----------~~~~~~Y~L~AVV~H~G----GHYtAyVR~~ 1592 (1634)
||+|||+||.... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||+|..
T Consensus 219 ~Lii~lkRf~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~ 297 (328)
T cd02660 219 VLCFQLKRFEHSLNKTSRKIDTYVQ-FPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG 297 (328)
T ss_pred eeEEEEEeEEecCCCCCcCCCcEEe-CCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence 9999999887643 3357776665 9999999998753 23457999999999999 9999999953
Q ss_pred CCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEE
Q 000342 1593 DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFF 1630 (1634)
Q Consensus 1593 ~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFY 1630 (1634)
+++||+|||+.|++++. ++|+. .+||||||
T Consensus 298 -~~~W~~~nD~~V~~~~~-~~v~~------~~ayil~Y 327 (328)
T cd02660 298 -DGQWFKFDDAMITRVSE-EEVLK------SQAYLLFY 327 (328)
T ss_pred -CCcEEEEECCeeEECCH-HHhcC------CCcEEEEe
Confidence 39999999999999997 88987 78999999
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-43 Score=417.92 Aligned_cols=282 Identities=19% Similarity=0.291 Sum_probs=222.6
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc---------cCCcHHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---------VGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~---------~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
||.|+| |||||||+||+|+|+|+||++++......... ....+++++|+.||..|+.. ...+++|
T Consensus 1 GL~NlG--nTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~----~~~~i~p 74 (324)
T cd02668 1 GLKNLG--ATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG----NRSVVDP 74 (324)
T ss_pred CcccCC--ceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC----CCceECh
Confidence 899999 79999999999999999999999865432111 12358999999999999965 4578999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEE
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~ 1452 (1634)
..|..++. |..++||||+|||.+|||.||+++..... ....++|+++|+|.+.++
T Consensus 75 ~~f~~~l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 75 SGFVKALG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred HHHHHHhC--------CCCccccCHHHHHHHHHHHHHHHHhhccC-----------------CcccchhhhhcceEEEEE
Confidence 99988773 55779999999999999999998764211 112567999999999999
Q ss_pred EeccCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEe
Q 000342 1453 MNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHIL 1523 (1634)
Q Consensus 1453 i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~~Cgk~~--~kq~~I 1523 (1634)
++|..|+.++.+ ++.|+.+ ++.. +..+|+++|+.|+..+ .|.|+ .|+++. .++..|
T Consensus 130 ~~C~~C~~~s~~--~e~f~~l~l~i~---------~~~sl~~~L~~~~~~e~l~g~~~~~C~----~C~~~~~a~k~~~i 194 (324)
T cd02668 130 TQCSKCGRESSL--PSKFYELELQLK---------GHKTLEECIDEFLKEEQLTGDNQYFCE----SCNSKTDATRRIRL 194 (324)
T ss_pred EEeCCCCCcccc--ccccEEEEEEec---------ccCCHHHHHHHhhCceecCCCccccCC----CCCceeeeEEEEEe
Confidence 999999998876 4566643 2221 1368999999987544 46665 688764 457889
Q ss_pred eccCCeEEEEEEeecCC---ccccccccccccccccccccccccCC-CCCCcEEEEEEEEEeC-----ceEEEEEEeCCC
Q 000342 1524 STPPHVFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQ 1594 (1634)
Q Consensus 1524 srLP~VLiIhLkrf~~~---~~~~KI~~~v~~fp~~LDLs~f~~g~-~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~ 1594 (1634)
.++|+||+|||+||... ....|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|+..+
T Consensus 195 ~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~-fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~ 273 (324)
T cd02668 195 TTLPPTLNFQLLRFVFDRKTGAKKKLNASIS-FPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT 273 (324)
T ss_pred cCCCCeEEEEEEcceeecccCcceeCCcEEE-CCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence 99999999999887542 33467777775 99999999997543 3457999999999998 999999997667
Q ss_pred CcEEEEcCCceEEeCChhhhhhhcc---------------CCCCceEEEEEE
Q 000342 1595 ERWIMYDDKTVKVVGSWSDVLSMCE---------------RGHLQPQVLFFE 1631 (1634)
Q Consensus 1595 ~kW~~FDDs~Vt~Vs~weeVLs~~~---------------~~~~qpYILFYe 1631 (1634)
++||+|||+.|++++. +.|....+ ....+||||||+
T Consensus 274 ~~W~~fdD~~V~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 274 GEWYKFNDEDVEEMPG-KPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CcEEEEECCceEEcCH-HHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 8999999999999987 66644222 135689999995
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-43 Score=412.80 Aligned_cols=287 Identities=20% Similarity=0.284 Sum_probs=223.8
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC-CccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHh
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-IHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALS 1380 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~-~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~ 1380 (1634)
||.|+| |||||||+||+|+|+|+||++++....... ......+++++|+.||..|+.. ...++|..|...|+
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~i~p~~~~~~l~ 73 (305)
T cd02657 1 GLTNLG--NTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK-----QEPVPPIEFLQLLR 73 (305)
T ss_pred Cccccc--chhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC-----CCcCCcHHHHHHHH
Confidence 899999 799999999999999999999998654321 2223458999999999999853 24799999999999
Q ss_pred hhCCCCccc---hhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1381 NLYPDSNFF---QEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1381 ~i~p~~~~F---~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
..++..... ..++||||+|||..|||.|++++... ....++|+++|+|.+.+.++|..
T Consensus 74 ~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------------------~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 74 MAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------------------GSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred HHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc-------------------CCCCcHHHHhhceEEEEEEEcCC
Confidence 887762111 35589999999999999999987541 11256799999999999999999
Q ss_pred CC-cccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcccc-cccCCCCCCCCccc--eEEEEeeccCCeEEE
Q 000342 1458 CG-LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ-LACDPGAGGCEKLN--YIHHILSTPPHVFTT 1532 (1634)
Q Consensus 1458 C~-~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~-~~Cd~~c~~Cgk~~--~kq~~IsrLP~VLiI 1532 (1634)
|+ .++.+ +++|..+ ++.... ....+++++|..++.++. ..|+ .|+... .++..|.++|+||+|
T Consensus 135 C~~~~~~~--~e~f~~Lsl~i~~~------~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~k~~~i~~lP~vLii 202 (305)
T cd02657 135 SPDEEEVS--TESEYKLQCHISIT------TEVNYLQDGLKKGLEEEIEKHSP----TLGRDAIYTKTSRISRLPKYLTV 202 (305)
T ss_pred CCCCCccc--cccceEEEeecCCC------cccccHHHHHHHhhhhhhhhcCc----ccCCCceEEEEEEeccCCcEEEE
Confidence 99 66665 4455433 222110 012578999988775443 3454 455543 467899999999999
Q ss_pred EEEeecCC---ccccccccccccccccccccccccCCCCCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCCc
Q 000342 1533 VLGWQNTC---ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1634)
Q Consensus 1533 hLkrf~~~---~~~~KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs~ 1604 (1634)
||+||... ....|+...+. ||..|||++++. ....|+|+|||+|.| |||+||+|...+++||.|||+.
T Consensus 203 ~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~---~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~ 278 (305)
T cd02657 203 QFVRFFWKRDIQKKAKILRKVK-FPFELDLYELCT---PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDK 278 (305)
T ss_pred EEECCccccccCceeecCcEEE-CCceEecccccC---CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCc
Confidence 99988643 33457777765 999999998875 457999999999999 9999999976559999999999
Q ss_pred eEEeCChhhhhhhccCC-CCceEEEEEE
Q 000342 1605 VKVVGSWSDVLSMCERG-HLQPQVLFFE 1631 (1634)
Q Consensus 1605 Vt~Vs~weeVLs~~~~~-~~qpYILFYe 1631 (1634)
|+.|+. ++|+...+++ ..+||||||+
T Consensus 279 V~~~~~-~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 279 VSEVTE-EDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred eEEeCH-HHHHhhcCCCCCceEEEEEEC
Confidence 999998 8998755543 4699999995
No 8
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-43 Score=409.32 Aligned_cols=288 Identities=23% Similarity=0.383 Sum_probs=230.2
Q ss_pred CcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHH
Q 000342 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1634)
Q Consensus 1300 ~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL 1379 (1634)
|+||.|+| |||||||+||+|+|+|+||++++......+......|++|+|+.+|..+..+ +...+.|..|..++
T Consensus 1 ~~GL~N~g--ntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~p~~~~~~l 74 (304)
T cd02661 1 GAGLQNLG--NTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS----SGPGSAPRIFSSNL 74 (304)
T ss_pred CCCccccC--chhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhC----CCCccChHHHHHHH
Confidence 68999999 7999999999999999999999876543334445569999999999998854 45788999999999
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000342 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1634)
Q Consensus 1380 ~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~ 1459 (1634)
..+.+. |..+.||||+|||.+|||.||+++.......... .......++++++|+|++.++++|..|+
T Consensus 75 ~~~~~~---f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~---------~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 142 (304)
T cd02661 75 KQISKH---FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAV---------DPSSQETTLVQQIFGGYLRSQVKCLNCK 142 (304)
T ss_pred HHHHHh---hcCcchhhHHHHHHHHHHHHHHHHhhhccccccc---------CccccCCChhhhcCCcEEeeeEEeCCCC
Confidence 887665 9999999999999999999999865432111000 0112236789999999999999999999
Q ss_pred cccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcccc------cccCCCCCCCCccc--eEEEEeeccCCeE
Q 000342 1460 LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ------LACDPGAGGCEKLN--YIHHILSTPPHVF 1530 (1634)
Q Consensus 1460 ~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~------~~Cd~~c~~Cgk~~--~kq~~IsrLP~VL 1530 (1634)
..+.+ ++.|..+ ++.. ...++.++|+.++..+. |.|+ .|+++. .++..|.++|++|
T Consensus 143 ~~s~~--~e~~~~l~l~i~---------~~~~l~~~l~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~~P~iL 207 (304)
T cd02661 143 HVSNT--YDPFLDLSLDIK---------GADSLEDALEQFTKPEQLDGENKYKCE----RCKKKVKASKQLTIHRAPNVL 207 (304)
T ss_pred CCcCc--cccceeeeeecC---------CCCcHHHHHHHhcCceeeCCCCCeeCC----CCCCccceEEEEEEecCCcEE
Confidence 98886 4455432 2211 12589999998875443 4564 688764 4577899999999
Q ss_pred EEEEEeecCCccccccccccccccccccccccccC-CCCCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCCc
Q 000342 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1634)
Q Consensus 1531 iIhLkrf~~~~~~~KI~~~v~~fp~~LDLs~f~~g-~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs~ 1604 (1634)
+|||+|+... ...|+...+. ||..|||.+++.. ......|+|+|||+|.| |||+||+|. .+++||+|||..
T Consensus 208 ~i~l~Rf~~~-~~~Ki~~~v~-f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~ 284 (304)
T cd02661 208 TIHLKRFSNF-RGGKINKQIS-FPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSK 284 (304)
T ss_pred EEEEeccccC-CccccCCeEe-cCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCe
Confidence 9999998775 4567877765 9999999998764 45668999999999999 899999996 368999999999
Q ss_pred eEEeCChhhhhhhccCCCCceEEEEE
Q 000342 1605 VKVVGSWSDVLSMCERGHLQPQVLFF 1630 (1634)
Q Consensus 1605 Vt~Vs~weeVLs~~~~~~~qpYILFY 1630 (1634)
|++++. ++|+. .+||||||
T Consensus 285 V~~v~~-~~v~~------~~aYil~Y 303 (304)
T cd02661 285 VSPVSI-ETVLS------QKAYILFY 303 (304)
T ss_pred eEECCH-HHhcC------CCcEEEEe
Confidence 999976 89987 69999999
No 9
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-42 Score=410.46 Aligned_cols=268 Identities=21% Similarity=0.358 Sum_probs=210.0
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHH-HHHHHh
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS-LRIALS 1380 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~-L~~aL~ 1380 (1634)
||.|+| |||||||+||+|+++|+||+++++...+. .....++.++|+.+|..|... ...++.|.. +..++.
T Consensus 1 GL~NlG--nTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~----~~~~~~~~~~~l~~~~ 72 (327)
T cd02664 1 GLINLG--NTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHT----QRRAEAPPDYFLEASR 72 (327)
T ss_pred CCcCCc--ccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhc----CCcccCCHHHHHHHhc
Confidence 899999 79999999999999999999999976431 223457889999999998854 345667765 554442
Q ss_pred hhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCc
Q 000342 1381 NLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGL 1460 (1634)
Q Consensus 1381 ~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~ 1460 (1634)
. ..|..+.||||||||..||+.|+. +|.++|+|++.++++|..|+.
T Consensus 73 --~---~~f~~~~QqDa~EFl~~lLd~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~ 118 (327)
T cd02664 73 --P---PWFTPGSQQDCSEYLRYLLDRLHT-----------------------------LIEKMFGGKLSTTIRCLNCNS 118 (327)
T ss_pred --c---cccCCCCcCCHHHHHHHHHHHHHH-----------------------------HHHhhCcEEeEeEEEcCCCCC
Confidence 1 248889999999999999999992 267999999999999999999
Q ss_pred ccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcc------cccccCCCCCCCCcc--ceEEEEeeccCCeEE
Q 000342 1461 ESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEKL--NYIHHILSTPPHVFT 1531 (1634)
Q Consensus 1461 ~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~------e~~~Cd~~c~~Cgk~--~~kq~~IsrLP~VLi 1531 (1634)
++.+ ++.|..+ ++. .+++++|+.|+.. +.|.|+ .|+++ ..++..|.++|+||+
T Consensus 119 ~s~~--~e~f~~l~L~i------------~sl~~~l~~~~~~E~l~g~n~~~C~----~C~~~~~a~k~~~i~~lP~vLi 180 (327)
T cd02664 119 TSAR--TERFRDLDLSF------------PSVQDLLNYFLSPEKLTGDNQYYCE----KCASLQDAEKEMKVTGAPEYLI 180 (327)
T ss_pred Eecc--cccceeeecCC------------CCHHHHHHHhcCeeEccCCCceeCC----ccCCccceeEEEEcccCChhhE
Confidence 8876 4455432 222 1688999888743 347776 57765 456788999999999
Q ss_pred EEEEeecCCc---cccccccccccccccccccccccC--------------------CCCCCcEEEEEEEEEeC-----c
Q 000342 1532 TVLGWQNTCE---SFDDITATLAALSPEIDISILYRG--------------------LDPKRRHSLVSVVCYYG-----Q 1583 (1634)
Q Consensus 1532 IhLkrf~~~~---~~~KI~~~v~~fp~~LDLs~f~~g--------------------~~~~~~Y~L~AVV~H~G-----G 1583 (1634)
|||+||.... ...|+.+.+. ||..|||..+... ..+...|+|+|||+|.| |
T Consensus 181 i~LkRF~~~~~~~~~~Ki~~~v~-fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~G 259 (327)
T cd02664 181 LTLLRFSYDQKTHVREKIMDNVS-INEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESG 259 (327)
T ss_pred EEeeeeEEccccCcceecCceEe-cCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCc
Confidence 9999886432 3468888776 9999999877521 12356999999999999 9
Q ss_pred eEEEEEEeCC--------------------CCcEEEEcCCceEEeCChhhhhhhcc-CCCCceEEEEEE
Q 000342 1584 HYHCFAYSHD--------------------QERWIMYDDKTVKVVGSWSDVLSMCE-RGHLQPQVLFFE 1631 (1634)
Q Consensus 1584 HYtAyVR~~~--------------------~~kW~~FDDs~Vt~Vs~weeVLs~~~-~~~~qpYILFYe 1631 (1634)
|||||+|... .++||+|||+.|+.++. ++|.+..+ ....+||||||+
T Consensus 260 HY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~-~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 260 HYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSF-ESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred ceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCH-HHHHHhhCCCCCCCEEEEEeC
Confidence 9999999643 47999999999999987 88876322 345789999995
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-42 Score=405.38 Aligned_cols=282 Identities=15% Similarity=0.246 Sum_probs=211.4
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC--CCccCCcHHHHHHHHHHHHHhhccCC----------CCCcc
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTD----------TRKEA 1369 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~--~~~~~~~cv~~aL~~LF~~L~~~s~g----------~~~~~ 1369 (1634)
||.|+| |||||||+||||+|+|+||++|+...... .......|+.++|+++|..|+..... ....+
T Consensus 1 GL~NlG--NTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLG--NSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCC--cchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999 89999999999999999999998743211 11122347999999999999753211 02457
Q ss_pred cCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceE
Q 000342 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDI 1449 (1634)
Q Consensus 1370 vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l 1449 (1634)
+.|..|+.+++...+. |..+.||||||||.+||+.||+++.... ...+.++|+|.+
T Consensus 79 i~p~~~~~~l~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~~---------------------~~~~~~~f~~~~ 134 (311)
T cd02658 79 IKPSMFKALIGKGHPE---FSTMRQQDALEFLLHLIDKLDRESFKNL---------------------GLNPNDLFKFMI 134 (311)
T ss_pred cCcHHHHHHHhccChh---hcccccccHHHHHHHHHHHHHHhhcccc---------------------cCCchhheEEEe
Confidence 9999999999887766 9999999999999999999999865211 234679999999
Q ss_pred EEEEeccCCCcccccccccceeec-ccchhhhhh-----hhhcccCCHHHHHHHHhcccccccCCCCCCCCccc--eEEE
Q 000342 1450 FERMNCYSCGLESRHLKYTSFFHN-INASALRTM-----KVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLN--YIHH 1521 (1634)
Q Consensus 1450 ~s~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~-----k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~--~kq~ 1521 (1634)
.+.++|..|+..+.. ++.|..+ ++....... .......+|+++|+.|+..+.+. ..|+.|+++. .++.
T Consensus 135 ~~~i~C~~C~~~s~~--~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~--~~C~~C~~~~~a~k~~ 210 (311)
T cd02658 135 EDRLECLSCKKVKYT--SELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE--DFCSTCKEKTTATKTT 210 (311)
T ss_pred eEEEEcCCCCCEEEe--ecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc--ccccCCCCcccEEEEE
Confidence 999999999987665 3343332 222111100 01123469999999988766542 1234587664 4678
Q ss_pred EeeccCCeEEEEEEeecCC--ccccccccccccccccccccccccCCCCCCcEEEEEEEEEeC-----ceEEEEEEeC--
Q 000342 1522 ILSTPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSH-- 1592 (1634)
Q Consensus 1522 ~IsrLP~VLiIhLkrf~~~--~~~~KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~-- 1592 (1634)
.|.++|+||+|||+||... ....|+...+. ||..| ....|+|+|||+|.| |||+||+|..
T Consensus 211 ~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~-~p~~l----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~ 279 (311)
T cd02658 211 GFKTFPDYLVINMKRFQLLENWVPKKLDVPID-VPEEL----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEID 279 (311)
T ss_pred EeecCCceEEEEeEEEEecCCCceEeeccccc-cCCcC----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCC
Confidence 8999999999999988663 23356655543 66554 346899999999999 9999999954
Q ss_pred CCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1593 DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1593 ~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
.+++||.|||+.|++++. .+|+. .+||||||+
T Consensus 280 ~~~~W~~fnD~~V~~~~~-~~~~~------~~~YilfY~ 311 (311)
T cd02658 280 GEGKWVLFNDEKVVASQD-PPEMK------KLGYIYFYQ 311 (311)
T ss_pred CCCCEEEecCceeEECCc-ccccC------CcceEEEEC
Confidence 249999999999999998 77866 799999996
No 11
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-42 Score=406.62 Aligned_cols=280 Identities=20% Similarity=0.287 Sum_probs=210.7
Q ss_pred cCCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHH---HHhhccCCCCCc
Q 000342 1292 NVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFT---ALSIASTDTRKE 1368 (1634)
Q Consensus 1292 s~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~---~L~~~s~g~~~~ 1368 (1634)
..-....+.+||.|+| |||||||+||+|+|+|+||+.+++..... .....++.+|. .++.. ...
T Consensus 16 ~~~~~~~~~~GL~NlG--nTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~----~~~ 82 (332)
T cd02671 16 EKRENLLPFVGLNNLG--NTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYND----ELA 82 (332)
T ss_pred cccccCCCCcceeccC--ceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhh----ccc
Confidence 3444567889999999 79999999999999999999987754111 11223343333 22221 223
Q ss_pred ccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccce
Q 000342 1369 AVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMD 1448 (1634)
Q Consensus 1369 ~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~ 1448 (1634)
.+.|..|+.+++...+. |..+.||||||||..|||.||. +|+++|+|.
T Consensus 83 ~~~P~~~~~~l~~~~~~---f~~~~QQDA~EFl~~LLd~L~~-----------------------------~i~~~F~g~ 130 (332)
T cd02671 83 NQAPRRLLNALREVNPM---YEGYLQHDAQEVLQCILGNIQE-----------------------------LVEKDFQGQ 130 (332)
T ss_pred ccCHHHHHHHHHHhccc---cCCccccCHHHHHHHHHHHHHH-----------------------------HHHhhhceE
Confidence 55799999999987765 8899999999999999999994 267899999
Q ss_pred EEEEEeccCCCcccccccccceeec-ccchhhh--hh--------hhhcccCCHHHHHHHHhccc------ccccCCCCC
Q 000342 1449 IFERMNCYSCGLESRHLKYTSFFHN-INASALR--TM--------KVMCAESSLDELLNLVEMNH------QLACDPGAG 1511 (1634)
Q Consensus 1449 l~s~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~--~~--------k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~ 1511 (1634)
+.++++|..|++.+.+ ++.|+++ ++..... .. .......+|+++|+.|+..+ +|.|+
T Consensus 131 ~~~~~~C~~C~~~s~~--~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~---- 204 (332)
T cd02671 131 LVLRTRCLECETFTER--REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCE---- 204 (332)
T ss_pred EEEEEEeCCCCCeece--ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCC----
Confidence 9999999999999887 5677754 3322110 00 00012358999999987544 56776
Q ss_pred CCCccc--eEEEEeeccCCeEEEEEEeecCCc-------cccccccccccccccccccccccCCCCCCcEEEEEEEEEeC
Q 000342 1512 GCEKLN--YIHHILSTPPHVFTTVLGWQNTCE-------SFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG 1582 (1634)
Q Consensus 1512 ~Cgk~~--~kq~~IsrLP~VLiIhLkrf~~~~-------~~~KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G 1582 (1634)
.|+++. .++..|.++|+||+|||+||.... ...|+...+. ||..||+.++... .....|+|+|||+|.|
T Consensus 205 ~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~-~~~~~Y~L~~VI~H~G 282 (332)
T cd02671 205 NCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLL-TPLKLSLEEWSTK-PKNDVYRLFAVVMHSG 282 (332)
T ss_pred CCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCcccc-CccccccccccCC-CCCCeEEEEEEEEEcC
Confidence 577664 467889999999999999987532 3467777765 8999998866543 3457999999999999
Q ss_pred -----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhh---hccCCCCceEEEEEE
Q 000342 1583 -----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLS---MCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1583 -----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs---~~~~~~~qpYILFYe 1631 (1634)
|||+|||| ||+|||+.|+.++. ++++. ....++.+||||||+
T Consensus 283 ~~~~~GHY~a~vr------W~~fdD~~V~~~~~-~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 283 ATISSGHYTAYVR------WLLFDDSEVKVTEE-KDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCCCCCeEEEEEE------EEEEcCcceEEccH-HHHHhhcCCCCCCCCceEEEEEC
Confidence 99999999 99999999999986 55543 345567899999995
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-42 Score=402.35 Aligned_cols=243 Identities=24% Similarity=0.380 Sum_probs=193.7
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~~ 1381 (1634)
||.|+| ||||||||||+|+|+|+||++++. +|..|+..+..
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~ 41 (279)
T cd02667 1 GLSNLG--NTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCR 41 (279)
T ss_pred CCcCCC--CchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHH
Confidence 899999 799999999999999999999987 33444444544
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000342 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1634)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~ 1461 (1634)
..+. |..++||||+|||..|||.|+. +|+++|+|++.++++|..|+..
T Consensus 42 ~~~~---f~~~~QqDA~Efl~~lld~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~~ 89 (279)
T cd02667 42 KAPQ---FKGYQQQDSHELLRYLLDGLRT-----------------------------FIDSIFGGELTSTIMCESCGTV 89 (279)
T ss_pred hhHh---hcCCchhhHHHHHHHHHHHHHH-----------------------------hhhhhcceEEEEEEEcCCCCCE
Confidence 4333 8888999999999999999992 2678999999999999999999
Q ss_pred cccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcccccc--cCCCCCCCCccceEEEEeeccCCeEEEEEEeec
Q 000342 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQLA--CDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQN 1538 (1634)
Q Consensus 1462 S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~--Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf~ 1538 (1634)
+.+ .+.|+.+ ++... ......+|+++|+.|+..+.+. +...|..|++ ..++..|.++|+||+|||+||.
T Consensus 90 s~~--~E~f~~L~Lp~~~-----~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-a~k~~~i~~~P~~Lii~LkRF~ 161 (279)
T cd02667 90 SLV--YEPFLDLSLPRSD-----EIKSECSIESCLKQFTEVEILEGNNKFACENCTK-AKKQYLISKLPPVLVIHLKRFQ 161 (279)
T ss_pred eCc--cccceEEecCCCc-----ccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc-eeeEeEhhhCCCeEEEEEeccc
Confidence 887 4566543 33210 1123478999999988654431 1122346877 6678889999999999999987
Q ss_pred CCc--cccccccccccccccccccccccC------CCCCCcEEEEEEEEEeC----ceEEEEEEeCC-------------
Q 000342 1539 TCE--SFDDITATLAALSPEIDISILYRG------LDPKRRHSLVSVVCYYG----QHYHCFAYSHD------------- 1593 (1634)
Q Consensus 1539 ~~~--~~~KI~~~v~~fp~~LDLs~f~~g------~~~~~~Y~L~AVV~H~G----GHYtAyVR~~~------------- 1593 (1634)
... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||+|...
T Consensus 162 ~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~ 240 (279)
T cd02667 162 QPRSANLRKVSRHVS-FPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKP 240 (279)
T ss_pred cCcccCceecCceEe-CCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccccccccccc
Confidence 643 3467777765 9999999999764 23457999999999999 99999999643
Q ss_pred --------CCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1594 --------QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1594 --------~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
++.||+|||+.|++|+. ++|+. .+|||||||
T Consensus 241 ~~~~~~~~~~~W~~~dD~~V~~v~~-~~v~~------~~aYiLfYe 279 (279)
T cd02667 241 AADEAGPGSGQWYYISDSDVREVSL-EEVLK------SEAYLLFYE 279 (279)
T ss_pred ccccCCCCCCcEEEEECCccEECCH-HHhcc------CCcEEEEeC
Confidence 78999999999999998 88887 789999996
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-42 Score=421.19 Aligned_cols=292 Identities=18% Similarity=0.213 Sum_probs=222.8
Q ss_pred ccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000342 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1634)
Q Consensus 1298 i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~ 1377 (1634)
.+.+||.|+| ||||||||||+|+|+|+||++|+.............++.++|..+|+.++.... ...+++|..|..
T Consensus 117 ~G~vGL~NlG--nTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~--~~~~isP~~fl~ 192 (440)
T cd02669 117 PGFVGLNNIK--NNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRN--FKGHVSPHELLQ 192 (440)
T ss_pred CCccCccCCC--CchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhcccc--CCCccCHHHHHH
Confidence 4578999999 799999999999999999999998654321112344899999999999985421 357899999999
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1378 aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
++....+ ..|..++||||||||.+|||.||+++.... ....++|+++|+|++.+.++|..
T Consensus 193 ~l~~~~~--~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------------------~~~~~ii~~~F~G~l~~~~~c~~ 252 (440)
T cd02669 193 AVSKVSK--KKFSITEQSDPVEFLSWLLNTLHKDLGGSK------------------KPNSSIIHDCFQGKVQIETQKIK 252 (440)
T ss_pred HHHhhcc--cccCCcccCCHHHHHHHHHHHHHHHhccCC------------------CCCCCcceeccCceEEEEEEeec
Confidence 9987542 358899999999999999999999876421 12368999999999999999886
Q ss_pred CCccc-------------ccccccceeec---ccchhhh---hhhhhcccCCHHHHHHHHhcccccccCCCCCCCCcc--
Q 000342 1458 CGLES-------------RHLKYTSFFHN---INASALR---TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKL-- 1516 (1634)
Q Consensus 1458 C~~~S-------------~~~~~~sf~~l---I~~~~l~---~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~-- 1516 (1634)
|...+ ....+++|+.+ |+..+.. ......+..+++++|+.|. |+ .|...
T Consensus 253 ~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~------~~----~c~~~~~ 322 (440)
T cd02669 253 PHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD------GK----TETELKD 322 (440)
T ss_pred ccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcC------Cc----cceeccc
Confidence 65321 11124566644 3322111 1122345689999997654 43 23322
Q ss_pred ceEEEEeeccCCeEEEEEEeecCCcc-cccccccccccccc-cccccccc----CCCCCCcEEEEEEEEEeC-----ceE
Q 000342 1517 NYIHHILSTPPHVFTTVLGWQNTCES-FDDITATLAALSPE-IDISILYR----GLDPKRRHSLVSVVCYYG-----QHY 1585 (1634)
Q Consensus 1517 ~~kq~~IsrLP~VLiIhLkrf~~~~~-~~KI~~~v~~fp~~-LDLs~f~~----g~~~~~~Y~L~AVV~H~G-----GHY 1585 (1634)
..++..|.++|+||+|||+||..... ..|+... +.||.. |||++|+. +......|+|+|||+|.| |||
T Consensus 323 a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~-V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY 401 (440)
T cd02669 323 SLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTI-VNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTW 401 (440)
T ss_pred ceEEEEEeeCCcEEEEEEecccCCCCccccCCCE-EECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeE
Confidence 36788999999999999999976543 3455544 459997 89999974 234568999999999999 999
Q ss_pred EEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1586 HCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1586 tAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
+||+|+..+|+||.|||+.|++++. ++|+. .+||||||+
T Consensus 402 ~a~v~~~~~~~W~~fdD~~V~~v~~-~~v~~------~eaYll~Y~ 440 (440)
T cd02669 402 RVQLRHKSTNKWFEIQDLNVKEVLP-QLIFL------SESYIQIWE 440 (440)
T ss_pred EEEEEcCCCCeEEEEECCeeeEcCH-HHhcc------CCceEEEeC
Confidence 9999976689999999999999988 88887 899999996
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-41 Score=400.17 Aligned_cols=289 Identities=20% Similarity=0.305 Sum_probs=219.8
Q ss_pred CcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHH
Q 000342 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1634)
Q Consensus 1300 ~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL 1379 (1634)
..||.|+| |||||||+||+|+++|+||+++++.... .......++.++|+.||..|.... ...+.|..+. .+
T Consensus 2 ~~GL~N~G--ntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~----~~~~~~~~~~-~~ 73 (334)
T cd02659 2 YVGLKNQG--ATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSE----SPVKTTELTD-KT 73 (334)
T ss_pred CCCcccCC--cchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCC----ccccCcchhh-ee
Confidence 57999999 7999999999999999999999986321 222345589999999999999652 2344554433 11
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000342 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1634)
Q Consensus 1380 ~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~ 1459 (1634)
.... ...|..+.||||+|||..||+.|++++.... ..++|.++|+|.+...++|..|+
T Consensus 74 ~~~~--~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------~~~~i~~lF~g~~~~~~~C~~C~ 131 (334)
T cd02659 74 RSFG--WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG--------------------QEGLIKNLFGGKLVNYIICKECP 131 (334)
T ss_pred ccCC--CCCCCcccchhHHHHHHHHHHHHHHHhccCc--------------------ccchhhhhCceEEEeEEEecCCC
Confidence 1111 1347788999999999999999999875421 14578999999999999999998
Q ss_pred cccccccccceeecccchhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCCCcc--ceEEEEeeccCCeEE
Q 000342 1460 LESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFT 1531 (1634)
Q Consensus 1460 ~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~~Cgk~--~~kq~~IsrLP~VLi 1531 (1634)
..+.. .+.|+.+ +... .+..+++++|+.++..+ .|.|+ .|+++ ..++..|.++|+||+
T Consensus 132 ~~s~~--~e~f~~l-~l~i-------~~~~~l~~~l~~~~~~e~l~~~~~~~C~----~C~~~~~~~k~~~i~~lP~vLi 197 (334)
T cd02659 132 HESER--EEYFLDL-QVAV-------KGKKNLEESLDAYVQGETLEGDNKYFCE----KCGKKVDAEKGVCFKKLPPVLT 197 (334)
T ss_pred ceecc--cccceEE-EEEc-------CCCCCHHHHHHHhcCeeEecCCccEecC----cCCCcccEEEEEEeecCCCEEE
Confidence 88776 4455533 2211 11367999999887543 36675 58876 345788999999999
Q ss_pred EEEEeecCC---ccccccccccccccccccccccccCC------------CCCCcEEEEEEEEEeC----ceEEEEEEeC
Q 000342 1532 TVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL------------DPKRRHSLVSVVCYYG----QHYHCFAYSH 1592 (1634)
Q Consensus 1532 IhLkrf~~~---~~~~KI~~~v~~fp~~LDLs~f~~g~------------~~~~~Y~L~AVV~H~G----GHYtAyVR~~ 1592 (1634)
|||+||... ....|+...+. ||..|||++++... .....|+|+|||+|.| |||+||+|..
T Consensus 198 i~l~Rf~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~ 276 (334)
T cd02659 198 LQLKRFEFDFETMMRIKINDRFE-FPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDR 276 (334)
T ss_pred EEeeeeEEccccCcceeCCceEe-CCceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECC
Confidence 999987642 23456666665 99999999887432 2346899999999999 9999999976
Q ss_pred CCCcEEEEcCCceEEeCChhhhhhhccCC----------------CCceEEEEEEecC
Q 000342 1593 DQERWIMYDDKTVKVVGSWSDVLSMCERG----------------HLQPQVLFFEAVN 1634 (1634)
Q Consensus 1593 ~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~----------------~~qpYILFYeRVn 1634 (1634)
.+++||+|||+.|++++. ++|+..|.++ ..+||||||++.+
T Consensus 277 ~~~~W~~~nD~~V~~i~~-~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 277 DDGKWYKFNDDVVTPFDP-NDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred CCCceEEEeCcccEECCH-HHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 679999999999999987 8998765544 3569999999853
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=402.62 Aligned_cols=314 Identities=22% Similarity=0.366 Sum_probs=240.7
Q ss_pred ccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCc-----HHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEP-----CVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1298 i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~-----cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
++..||.|+| |||||||.||||.|++.+|+||+...+..+.+.+++ .++.++.+|++++... ...++.|
T Consensus 263 ~GtcGL~NlG--NTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~----~~haf~P 336 (823)
T COG5560 263 AGTCGLRNLG--NTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG----NLHAFTP 336 (823)
T ss_pred ccccceecCC--cceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc----cccccCh
Confidence 5778999999 899999999999999999999999776545444443 6788999999988844 5689999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCccc----------ccccCCCCcc--CCCCcc
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESV----------ESNCMGSWDC--TNSACI 1440 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~----------es~~~g~w~~--~~~~Si 1440 (1634)
..|+..++.++.. |.+++|||+|||+.++||.||++++.....+..+.. ...+..-|.. ..+.|+
T Consensus 337 s~fK~tIG~fn~~---fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSi 413 (823)
T COG5560 337 SGFKKTIGSFNEE---FSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSI 413 (823)
T ss_pred HHHHHHHhhhHHH---hcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 9999999987654 999999999999999999999999744221111100 0111112543 346899
Q ss_pred ccccccceEEEEEeccCCCcccccccccceeec---ccch----------------------------------------
Q 000342 1441 VHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---INAS---------------------------------------- 1477 (1634)
Q Consensus 1441 I~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~l---I~~~---------------------------------------- 1477 (1634)
|+++|.|.+++++.|+.|+.+|.+ |++|+++ +|.+
T Consensus 414 ItdLFqgmyKSTL~Cp~C~~vsit--fDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~ 491 (823)
T COG5560 414 ITDLFQGMYKSTLTCPGCGSVSIT--FDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491 (823)
T ss_pred HHHHHHHHhhceeeccCcCceeee--ecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHh
Confidence 999999999999999999999877 4454433 1000
Q ss_pred --------------------------------------------------------------------------------
Q 000342 1478 -------------------------------------------------------------------------------- 1477 (1634)
Q Consensus 1478 -------------------------------------------------------------------------------- 1477 (1634)
T Consensus 492 gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~ 571 (823)
T COG5560 492 GKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIK 571 (823)
T ss_pred ccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecc
Confidence
Q ss_pred -----hh-------------------------------------------------------------------------
Q 000342 1478 -----AL------------------------------------------------------------------------- 1479 (1634)
Q Consensus 1478 -----~l------------------------------------------------------------------------- 1479 (1634)
.+
T Consensus 572 ~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek 651 (823)
T COG5560 572 ASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEK 651 (823)
T ss_pred hhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeecccc
Confidence 00
Q ss_pred --------------hhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCCCcc--ceEEEEeeccCCeEEEEEEee
Q 000342 1480 --------------RTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQ 1537 (1634)
Q Consensus 1480 --------------~~~k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~~Cgk~--~~kq~~IsrLP~VLiIhLkrf 1537 (1634)
+.+....+..+|++||..|...+ -|+|+ +|+.. ++|+..|+++|.||+|||+||
T Consensus 652 ~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCp----gCkefrqasKqmelwrlP~iLiihLkRF 727 (823)
T COG5560 652 RYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCP----GCKEFRQASKQMELWRLPMILIIHLKRF 727 (823)
T ss_pred chhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCC----chHhhhhhhhhhhhhcCChheeeehhhh
Confidence 00000114468999999987654 46786 68765 568999999999999999998
Q ss_pred cCCccc-cccccccccccc-ccccccccc-CCCCCCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCC
Q 000342 1538 NTCESF-DDITATLAALSP-EIDISILYR-GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGS 1610 (1634)
Q Consensus 1538 ~~~~~~-~KI~~~v~~fp~-~LDLs~f~~-g~~~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~ 1610 (1634)
+...+. .||...+. ||. .|||+.+.. -.++...|+|+||=+|+| ||||||+|+..+++||+|||+.|++|++
T Consensus 728 ss~rsfrdKiddlVe-yPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdp 806 (823)
T COG5560 728 SSVRSFRDKIDDLVE-YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDP 806 (823)
T ss_pred hhcccchhhhhhhhc-cccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCc
Confidence 765444 56666665 776 499986632 245668999999999999 9999999988899999999999999998
Q ss_pred hhhhhhhccCCCCceEEEEEEecC
Q 000342 1611 WSDVLSMCERGHLQPQVLFFEAVN 1634 (1634)
Q Consensus 1611 weeVLs~~~~~~~qpYILFYeRVn 1634 (1634)
++.+. ..||+|||+|.+
T Consensus 807 -ed~vt------ssaYvLFyrrk~ 823 (823)
T COG5560 807 -EDSVT------SSAYVLFYRRKS 823 (823)
T ss_pred -ccccc------ceeEEEEEEecC
Confidence 66666 689999999964
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=352.15 Aligned_cols=309 Identities=19% Similarity=0.287 Sum_probs=210.8
Q ss_pred cccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC----CCccCCcHHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE----HIHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1297 ~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~----~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
...+.||.|.| ||||||++||||+.+..+...|+...... +...+.+ ...+...|..+...........|+|
T Consensus 68 n~~p~GL~N~G--NtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~--g~~~~k~F~~l~~~~~~Hg~~sis~ 143 (415)
T COG5533 68 NLPPNGLRNKG--NTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKP--GSNAFKQFIALYETPGCHGPKSISP 143 (415)
T ss_pred ccCCccccccC--ceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCc--chhHHHHHHHHHhccccCCCcccch
Confidence 46789999999 89999999999999999988444322211 1111211 2233445555554322224567999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcc-cc-------ccc-----CCCCcc--CCC
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTES-VE-------SNC-----MGSWDC--TNS 1437 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es-~e-------s~~-----~g~w~~--~~~ 1437 (1634)
..|+..++.+.+. |++.+|||||||+.++||.||++++....-+.... .+ .-+ ...|.. ..+
T Consensus 144 ~nF~~i~~~~n~~---fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn 220 (415)
T COG5533 144 RNFIDILSGRNKL---FSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSN 220 (415)
T ss_pred HHHHHHHcccccc---ccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccc
Confidence 9999999887665 99999999999999999999999976543221111 00 000 122542 346
Q ss_pred CccccccccceEEEEEeccCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHh------cccccccCCCC
Q 000342 1438 ACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGA 1510 (1634)
Q Consensus 1438 ~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c 1510 (1634)
.|+|-+.|.|+..++++|..|++.|++ |..|..+ |++.... ...+.||+..|. +.++|.|+
T Consensus 221 ~S~v~~~f~gq~~srlqC~~C~~TStT--~a~fs~l~vp~~~v~-------~~~l~eC~~~f~~~e~L~g~d~W~Cp--- 288 (415)
T COG5533 221 KSLVAKTFFGQDKSRLQCEACNYTSTT--IAMFSTLLVPPYEVV-------QLGLQECIDRFYEEEKLEGKDAWRCP--- 288 (415)
T ss_pred hHHHHHHHhhhhhhhhhhhhcCCceeE--Eeccceeeeccchhe-------eecHHHHHHHhhhHHhhcCcccccCc---
Confidence 799999999999999999999999998 5455433 3332111 134889998876 46788997
Q ss_pred CCCCcc--ceEEEEeeccCCeEEEEEEeecCC-ccccccccccc---cccccccccccc-c-CCCCCCcEEEEEEEEEeC
Q 000342 1511 GGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-ESFDDITATLA---ALSPEIDISILY-R-GLDPKRRHSLVSVVCYYG 1582 (1634)
Q Consensus 1511 ~~Cgk~--~~kq~~IsrLP~VLiIhLkrf~~~-~~~~KI~~~v~---~fp~~LDLs~f~-~-g~~~~~~Y~L~AVV~H~G 1582 (1634)
.|+++ ..|+..|.++|++||||++||.-. ....+|..+.. .++.+....+.+ . +.-...+|.|+|||||.|
T Consensus 289 -kC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G 367 (415)
T COG5533 289 -KCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG 367 (415)
T ss_pred -hhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc
Confidence 48877 457889999999999999988521 11122221111 011111111111 1 112456999999999999
Q ss_pred ----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEEec
Q 000342 1583 ----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEAV 1633 (1634)
Q Consensus 1583 ----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeRV 1633 (1634)
|||+++|+ .++.|+.|||+.|+.++---+. .+.++|||||+|+
T Consensus 368 ~L~gGHY~s~v~--~~~~W~~~dDs~vr~~~~~t~~------~~pSsYilFY~r~ 414 (415)
T COG5533 368 TLNGGHYFSEVK--RSGTWNVYDDSQVRKGSRTTSG------SHPSSYILFYTRS 414 (415)
T ss_pred eecCceeEEeee--ecCceEEechhheeeccceecc------cCCcceEEEEEec
Confidence 99999999 6799999999999998751122 2357899999986
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-37 Score=349.44 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=167.9
Q ss_pred CccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000342 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1634)
Q Consensus 1302 GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~~ 1381 (1634)
||.|+| |||||||+||+|+|+|+||+++....
T Consensus 1 Gl~N~g--~tCy~ns~lQ~L~~~~~f~~~~~~~~---------------------------------------------- 32 (240)
T cd02662 1 GLVNLG--NTCFMNSVLQALASLPSLIEYLEEFL---------------------------------------------- 32 (240)
T ss_pred CCcCCC--CccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------
Confidence 899999 79999999999999999999886521
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000342 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1634)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~ 1461 (1634)
+||||||||..||+.|+.. +.++|.|.+.+.++|..|+..
T Consensus 33 -----------~QqDa~EFl~~ll~~l~~~-----------------------------i~~~F~g~~~~~i~C~~C~~~ 72 (240)
T cd02662 33 -----------EQQDAHELFQVLLETLEQL-----------------------------LKFPFDGLLASRIVCLQCGES 72 (240)
T ss_pred -----------hhcCHHHHHHHHHHHHHHh-----------------------------ccCccccEEEEEEEeCCCCCc
Confidence 7999999999999999931 568899999999999999998
Q ss_pred cccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcccc---cccCCCCCCCCccceEEEEeeccCCeEEEEEEee
Q 000342 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ---LACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQ 1537 (1634)
Q Consensus 1462 S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~---~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf 1537 (1634)
+.. .+++|..+ ++..... .....+++++|+.|+..+. +.|+ .| +..|.++|+||+|||+||
T Consensus 73 s~~-~~e~f~~LsL~ip~~~----~~~~~sl~~~L~~~~~~E~l~~~~C~----~C------~~~i~~lP~vLii~LkRF 137 (240)
T cd02662 73 SKV-RYESFTMLSLPVPNQS----SGSGTTLEHCLDDFLSTEIIDDYKCD----RC------QTVIVRLPQILCIHLSRS 137 (240)
T ss_pred cCc-ceeeeeeeEecccccC----CCCCCCHHHHHHHhcCcccccCcCCC----CC------eEEeecCCcEEEEEEEEE
Confidence 764 14455543 2221110 0123689999999987664 4554 57 678999999999999988
Q ss_pred cCCc--cccccccccccccccccccccccCCCCCCcEEEEEEEEEeC----ceEEEEEEeC-------------------
Q 000342 1538 NTCE--SFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSH------------------- 1592 (1634)
Q Consensus 1538 ~~~~--~~~KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G----GHYtAyVR~~------------------- 1592 (1634)
.... ...|+...+. ||..| +...|+|+|||+|.| |||+||+|.+
T Consensus 138 ~~~~~~~~~K~~~~v~-fp~~l----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~ 206 (240)
T cd02662 138 VFDGRGTSTKNSCKVS-FPERL----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPS 206 (240)
T ss_pred EEcCCCceeeeccEEE-CCCcc----------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccC
Confidence 6433 3457766664 88876 467999999999999 9999999965
Q ss_pred -CCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1593 -DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1593 -~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
..+.||+|||+.|++|+. ++|+. ..+|||||||
T Consensus 207 ~~~~~W~~fnD~~V~~v~~-~~v~~-----~~~aY~LfYe 240 (240)
T cd02662 207 STSHPWWRISDTTVKEVSE-SEVLE-----QKSAYMLFYE 240 (240)
T ss_pred ccCCCEEEEechheEEeCH-HHHhh-----CCCEEEEEeC
Confidence 348999999999999998 78842 2789999996
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.6e-35 Score=335.69 Aligned_cols=252 Identities=22% Similarity=0.411 Sum_probs=195.4
Q ss_pred CcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCC-----CCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHH
Q 000342 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSP-----SEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS 1374 (1634)
Q Consensus 1300 ~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~-----~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~ 1374 (1634)
++||.|.| |||||||+||+|+++|+|+++++.... .........++.++|+.+|..|+... .....+.|..
T Consensus 1 ~~Gl~N~g--ntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~i~~~~ 76 (269)
T PF00443_consen 1 PVGLQNIG--NTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN--SSDSSISPSD 76 (269)
T ss_dssp --EESBSS--STHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC--SSSSEEHCHH
T ss_pred CCCcEeCC--CchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc--ccccceeecc
Confidence 58999999 899999999999999999999997510 11122233479999999999999651 2467999999
Q ss_pred HHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEe
Q 000342 1375 LRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMN 1454 (1634)
Q Consensus 1375 L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~ 1454 (1634)
|..++....+. |..+.||||+|||..||+.|++++..... .... ........+++.++|++.+.+.+.
T Consensus 77 ~~~~l~~~~~~---~~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 77 FINALSSINPS---FSNGEQQDAHEFLSFLLDWLDEEFNSSFK-----RKSW----KNTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHCGG---GGSSSTEEHHHHHHHHHHHHHHHHTSCSS-----HHHH----HHHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccc---cccccccchhhhhcccccccchhhccccc-----cccc----cccccccccccccccccccccccc
Confidence 99999988665 88999999999999999999998766421 0000 001112367889999999999999
Q ss_pred ccCCCcccccccccceeecccchhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCeEEEEE
Q 000342 1455 CYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534 (1634)
Q Consensus 1455 C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhL 1534 (1634)
|..|+.. +..|.++|++|+|+|
T Consensus 145 c~~c~~~----------------------------------------------------------~~~~~~~P~~L~i~l 166 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------------QSSISSLPPILIIQL 166 (269)
T ss_dssp ETTTTCE----------------------------------------------------------EEEEEEBBSEEEEEE
T ss_pred ccccccc----------------------------------------------------------ccccccccceeeecc
Confidence 9999766 567889999999999
Q ss_pred Eee--c-CCcccccccccccccc-ccccccccccCCCC----CCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcC
Q 000342 1535 GWQ--N-TCESFDDITATLAALS-PEIDISILYRGLDP----KRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDD 1602 (1634)
Q Consensus 1535 krf--~-~~~~~~KI~~~v~~fp-~~LDLs~f~~g~~~----~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDD 1602 (1634)
+|+ . ......|+...+. || ..|||+.++..... ...|+|+|||+|.| |||+||+|+..+++|++|||
T Consensus 167 ~R~~~~~~~~~~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD 245 (269)
T PF00443_consen 167 KRFEFDQETGRSKKINNPVE-FPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDD 245 (269)
T ss_dssp E-EEEESTSSEEEE--CEEB---SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEET
T ss_pred ccceeccccccccccccccc-cCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeC
Confidence 766 2 2233567777765 99 69999988764333 57999999999999 99999999776677999999
Q ss_pred CceEEeCChhhhhhhccCCCCceEEEEE
Q 000342 1603 KTVKVVGSWSDVLSMCERGHLQPQVLFF 1630 (1634)
Q Consensus 1603 s~Vt~Vs~weeVLs~~~~~~~qpYILFY 1630 (1634)
+.|++++. ++|+..+ ..+||||||
T Consensus 246 ~~v~~~~~-~~v~~~~---~~~~yll~Y 269 (269)
T PF00443_consen 246 SRVTEVSW-EEVIKSS---NSTAYLLFY 269 (269)
T ss_dssp TEEEEESH-HHHCCGG---STCEEEEEE
T ss_pred CceEECCH-HHHhhcc---CCceEEEeC
Confidence 99999987 8888755 578999999
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-35 Score=350.52 Aligned_cols=284 Identities=19% Similarity=0.197 Sum_probs=199.9
Q ss_pred CcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC----------Cc--c--------CCcHHHHHHHHHHHHHh
Q 000342 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH----------IH--V--------GEPCVVCALYEIFTALS 1359 (1634)
Q Consensus 1300 ~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~----------~~--~--------~~~cv~~aL~~LF~~L~ 1359 (1634)
|+||.|+| |||||||+||+|+++|+||++++....... .. . ...+++++|+.||..|+
T Consensus 1 PvGL~NlG--NTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~ 78 (343)
T cd02666 1 PAGLDNIG--NTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLI 78 (343)
T ss_pred CCCcccCC--ceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 68999999 899999999999999999999998652100 00 0 11268999999999999
Q ss_pred hccCCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCc
Q 000342 1360 IASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSAC 1439 (1634)
Q Consensus 1360 ~~s~g~~~~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~S 1439 (1634)
.+ ....+.|..+...+. | .||||+||+..||+.||.++......... +.. .......+
T Consensus 79 ~s----~~~~v~P~~~l~~l~--------~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~-~~~------~~~~~~~~ 136 (343)
T cd02666 79 HS----NTRSVTPSKELAYLA--------L---RQQDVTECIDNVLFQLEVALEPISNAFAG-PDT------EDDKEQSD 136 (343)
T ss_pred hC----CCCccCcHHHHHhcc--------c---cccchHHHHHHHHHHHHHHhcCccccccC-ccc------ccccchhh
Confidence 65 457899998865443 2 89999999999999999998764321110 000 01112368
Q ss_pred cccccccceEEEEEeccCCC---cccccccccceeec-ccchhhh-hhhhhcccCCHHHHHHHHhcccccccCCCCCCCC
Q 000342 1440 IVHSLFGMDIFERMNCYSCG---LESRHLKYTSFFHN-INASALR-TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE 1514 (1634)
Q Consensus 1440 iI~~LF~G~l~s~i~C~~C~---~~S~~~~~~sf~~l-I~~~~l~-~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cg 1514 (1634)
+|+++|+|++.+.++|..|+ ..+.+ .+.|+.+ ++..... .........++.++|+.|+..+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~--~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------- 203 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTK--TERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------- 203 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccc--cceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------
Confidence 99999999999999999887 44444 5677654 3322100 00001123789999999875443
Q ss_pred ccceEEEEeeccCCeEEEEEEeecCCccccccccccccccccccccccccC-----------------------------
Q 000342 1515 KLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRG----------------------------- 1565 (1634)
Q Consensus 1515 k~~~kq~~IsrLP~VLiIhLkrf~~~~~~~KI~~~v~~fp~~LDLs~f~~g----------------------------- 1565 (1634)
|.++|+||.|||++..........++... ||..+|..+....
T Consensus 204 --------~~~~P~vl~~qlq~~~~~~~~~~~~dry~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (343)
T cd02666 204 --------LTKLPQRSQVQAQLAQPLQRELISMDRYE-LPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFD 274 (343)
T ss_pred --------hccCCHHHHHHHhhcccccchheeecccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999863221111122223322 4443333222110
Q ss_pred CCCCCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEE
Q 000342 1566 LDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFF 1630 (1634)
Q Consensus 1566 ~~~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFY 1630 (1634)
......|+|+|||+|.| |||++|+|+..++.||+|||..|++++. ++|+....++..+||||||
T Consensus 275 ~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~-~ev~~~~~~~~~~pY~l~Y 342 (343)
T cd02666 275 DLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPA-SEVFLFTLGNTATPYFLVY 342 (343)
T ss_pred ccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecH-HHHhhcccCCCCCCEEEEe
Confidence 11457899999999999 9999999987779999999999999998 7787765567789999999
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-35 Score=362.69 Aligned_cols=316 Identities=21% Similarity=0.352 Sum_probs=225.8
Q ss_pred CCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc----cCCcHHHHHHHHHHHHHhhccCCCCCc
Q 000342 1293 VNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH----VGEPCVVCALYEIFTALSIASTDTRKE 1368 (1634)
Q Consensus 1293 ~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~----~~~~cv~~aL~~LF~~L~~~s~g~~~~ 1368 (1634)
........+||.|+| ||||||++||||+.++.||..++......... .....+..++..++..++... ...
T Consensus 294 ~~~~~~~~~GL~NlG--ntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~---~~~ 368 (653)
T KOG1868|consen 294 ASTDVFGCPGLRNLG--NTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH---GQF 368 (653)
T ss_pred ccccccCCceeccCC--cchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC---Cce
Confidence 334456778999999 89999999999999999998888764322211 122245666666666666432 567
Q ss_pred ccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCC----CCCcc---c-cccc-----CCCCccC
Q 000342 1369 AVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV----SDTES---V-ESNC-----MGSWDCT 1435 (1634)
Q Consensus 1369 ~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~----~~~es---~-es~~-----~g~w~~~ 1435 (1634)
.+.|..|+..+.++.+. |.++.|||||||+.++++.||+++...... +...+ . .... ...|...
T Consensus 369 s~~P~~f~~~~~~y~~~---~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~ 445 (653)
T KOG1868|consen 369 SVLPRRFIRVLKRYSPN---FSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRY 445 (653)
T ss_pred ecCcHHHHHHHhhcccc---cccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhh
Confidence 89999999999998877 888889999999999999999999765321 11000 0 0000 1113211
Q ss_pred --CCCccccccccceEEEEEeccCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhc------cccccc
Q 000342 1436 --NSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEM------NHQLAC 1506 (1634)
Q Consensus 1436 --~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~------~e~~~C 1506 (1634)
...+.|.++|.|++.+.++|..|++.|.+ |.+|... ++.. .........++.+|++.|+. ++.|.|
T Consensus 446 ~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t--~~~f~~lslpIp---~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~C 520 (653)
T KOG1868|consen 446 LEEEDSKIGDLFVGQLKSYLKCQACGYTSTT--FETFTDLSLPIP---KKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLC 520 (653)
T ss_pred ccccchHHHHHHHHHHHhheehhhcCCccee--eecceeeEEecc---cccccccccchHhhhccccchhhcccccccCC
Confidence 13455899999999999999999999998 6666644 2322 11222224779999999874 456777
Q ss_pred CCCCCCCCccc--e--EEEEeeccCCeEEEEEEeecCCc-ccccccccccccccc-ccccccc-cCCCCCCcEEEEEEEE
Q 000342 1507 DPGAGGCEKLN--Y--IHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSPE-IDISILY-RGLDPKRRHSLVSVVC 1579 (1634)
Q Consensus 1507 d~~c~~Cgk~~--~--kq~~IsrLP~VLiIhLkrf~~~~-~~~KI~~~v~~fp~~-LDLs~f~-~g~~~~~~Y~L~AVV~ 1579 (1634)
+ .|+++. + ++..|.++|+||++||+||.... ...+.... +.||.. .|+.++. ........|+|+|||+
T Consensus 521 p----~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~-v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~ 595 (653)
T KOG1868|consen 521 P----RCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTG-VDFPLREADLSPRFAEKGNNPKSYRLYAVVN 595 (653)
T ss_pred c----cccCcccccccceeeeecCCHHHHHHHHHhccCccccccccee-eccchHhhhhchhccccCCCccceeeEEEEe
Confidence 6 587773 2 67789999999999999887754 33333333 346654 4555432 2333345799999999
Q ss_pred EeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEEec
Q 000342 1580 YYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEAV 1633 (1634)
Q Consensus 1580 H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeRV 1633 (1634)
|.| |||||||+....+.||.|||+.|+.+++ .+|.. ..||||||+|.
T Consensus 596 H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~-~~~~~------s~aYIlFY~~~ 646 (653)
T KOG1868|consen 596 HSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISE-TDVGS------SSAYILFYERL 646 (653)
T ss_pred ccCcccCCceEEEEeecCCCceEEecCeeeecccc-ccccC------CCceEEEeecC
Confidence 999 9999999977779999999999998877 56653 78999999985
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-33 Score=313.84 Aligned_cols=193 Identities=24% Similarity=0.430 Sum_probs=147.8
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000342 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1634)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~ 1472 (1634)
.||||+||+.+||+.|+. ++.++|+|.+.++++|..|+..+.. .+.|..
T Consensus 21 ~QqDa~Ef~~~ll~~l~~-----------------------------~i~~~F~~~~~~~~~C~~C~~~~~~--~e~~~~ 69 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS-----------------------------IIVDLFQGQLKSRLTCLTCGKTSTT--FEPFTY 69 (230)
T ss_pred hhhhHHHHHHHHHHHHhh-----------------------------hHHheeCCEEeCcEEcCCCcCCcce--ecceeE
Confidence 799999999999999991 2678999999999999999998876 444443
Q ss_pred c-ccchhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEeeccCCeEEEEEEeecCCc-c
Q 000342 1473 N-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHILSTPPHVFTTVLGWQNTCE-S 1542 (1634)
Q Consensus 1473 l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e------~~~Cd~~c~~Cgk~~--~kq~~IsrLP~VLiIhLkrf~~~~-~ 1542 (1634)
+ ++.+.. ....+..+|+++|+.++..+ .+.|+ .|++.. .++..|.++|++|+|||+|+.... .
T Consensus 70 l~l~ip~~---~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~ 142 (230)
T cd02674 70 LSLPIPSG---SGDAPKVTLEDCLRLFTKEETLDGDNAWKCP----KCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGS 142 (230)
T ss_pred EEEecccc---cCCCCCCCHHHHHHHhcCccccCCCCceeCC----CCCCccceEEEEEEecCChhhEeEhhheecCCCC
Confidence 3 221110 00023479999999887544 35665 577664 457789999999999998776543 3
Q ss_pred ccccccccccccc-ccccccccc--CCCCCCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhh
Q 000342 1543 FDDITATLAALSP-EIDISILYR--GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVL 1615 (1634)
Q Consensus 1543 ~~KI~~~v~~fp~-~LDLs~f~~--g~~~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVL 1615 (1634)
..|+...+. ||. .||+.+++. ......+|+|+|||+|.| |||+||+|...+++|++|||+.|++|+. +++.
T Consensus 143 ~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~-~~~~ 220 (230)
T cd02674 143 TRKLTTPVT-FPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSE-SSVV 220 (230)
T ss_pred cccCCceEe-ccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCH-HHcc
Confidence 456666654 885 589988742 234567999999999999 9999999966569999999999999998 5663
Q ss_pred hhccCCCCceEEEEEE
Q 000342 1616 SMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1616 s~~~~~~~qpYILFYe 1631 (1634)
. .+||||||+
T Consensus 221 ~------~~~YlL~Y~ 230 (230)
T cd02674 221 S------SSAYILFYE 230 (230)
T ss_pred C------CCceEEEeC
Confidence 3 799999996
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=332.04 Aligned_cols=309 Identities=13% Similarity=0.186 Sum_probs=209.2
Q ss_pred ccccCCCCCCCCCccccccccccchhHhhhHHHHHHHHh-hhhhhhccccCcccccccccccccccc-ccc-cccccccc
Q 000342 1213 TGAAAPYLGDGGTKTLRQLHAEEDDEERFQADLKQAVRQ-SLDTFQAHQKMPLVSSLRMTQNVSLEA-NKV-AVLSNEVR 1289 (1634)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~a~~~-S~~~~~~~~~~p~~~s~~~~~~~~~~~-~~~-~p~s~~~~ 1289 (1634)
++|.+-++-.+.+.+.-+++++++++++..+.|..++.- -.+-...... .....+.-+.. ... ......++
T Consensus 223 tghPLaVKLgsIs~dg~DvycY~cDd~v~dPnl~~hl~hfGId~~~m~kt------eksl~elel~~N~i~Ew~~~~esg 296 (763)
T KOG0944|consen 223 TGHPLAVKLGSISPDGADVYCYDCDDEVRDPNLESHLSHFGIDMAKMDKT------EKSLVELELDQNRIWEWEALEESG 296 (763)
T ss_pred cCCceEEEecccCCCccceeeecccccccCccHHHHHHhcCccHHHhccc------hhHHHHHHHHhhcccCceeeccCC
Confidence 334555555666666679999999999999999988642 1111111110 01111111111 111 11122222
Q ss_pred cccCCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC--CccCCcHHHHHHHHHHHHHhhccCCCC-
Q 000342 1290 SENVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTR- 1366 (1634)
Q Consensus 1290 ~~s~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~~s~g~~- 1366 (1634)
..-..-...+.+||+|+| |+||||||||+|+++|.|...++....... ......++.|.|.+|...|........
T Consensus 297 ~~l~p~~gpgytGl~NlG--NSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~ 374 (763)
T KOG0944|consen 297 APLEPLFGPGYTGLINLG--NSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPL 374 (763)
T ss_pred CccccccCCCccceeecC--cchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCcc
Confidence 222223446778999999 899999999999999999988887632222 222345899999999999986543211
Q ss_pred -----CcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccc
Q 000342 1367 -----KEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIV 1441 (1634)
Q Consensus 1367 -----~~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI 1441 (1634)
...|+|..|+..+++-+|. |....||||+|||.+||+.|.+..... ..-+
T Consensus 375 ~~~~~qngIsP~mFK~~igknHpe---Fst~~QQDA~EFllfLl~ki~~n~rs~----------------------~~np 429 (763)
T KOG0944|consen 375 MDPSNQNGISPLMFKALIGKNHPE---FSTNRQQDAQEFLLFLLEKIRENSRSS----------------------LPNP 429 (763)
T ss_pred CCccccCCcCHHHHHHHHcCCCcc---ccchhhhhHHHHHHHHHHHHhhccccc----------------------CCCH
Confidence 3689999999999988777 999999999999999999999853321 1237
Q ss_pred cccccceEEEEEeccCCCcccccccccceeecccchhhhhhhhhcccCCHHHHHHHHhcc--cccccCCCCCCCCccc--
Q 000342 1442 HSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMN--HQLACDPGAGGCEKLN-- 1517 (1634)
Q Consensus 1442 ~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~~~--e~~~Cd~~c~~Cgk~~-- 1517 (1634)
+++|...+..++.|..|+++..+. ...++..+++.... .....+.|..||+.|+.. +.++| +.|+.+.
T Consensus 430 td~frF~ve~Rv~C~~c~kVrYs~-~~~~~i~lpv~~~~---~v~~~v~~~~cleaff~pq~~df~s----~ac~~K~~a 501 (763)
T KOG0944|consen 430 TDLFRFEVEDRVSCLGCRKVRYSY-ESEYLIQLPVPMTN---EVREKVPISACLEAFFEPQVDDFWS----TACGEKKGA 501 (763)
T ss_pred HHHHHhhhhhhhhhhccccccccc-hhheeeEeeccccc---cccccCCHHHHHHHhcCCcchhhhh----HhhcCcccc
Confidence 899999999999999999998764 23444445543211 123457999999999987 24445 3587764
Q ss_pred eEEEEeeccCCeEEEEEEeecCCccc-cccccccccccccccccccc
Q 000342 1518 YIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPEIDISILY 1563 (1634)
Q Consensus 1518 ~kq~~IsrLP~VLiIhLkrf~~~~~~-~KI~~~v~~fp~~LDLs~f~ 1563 (1634)
.+...|..+|++|+||..+|...... +|+...+. +|..||++.|.
T Consensus 502 ~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~ie-mpe~ldls~~r 547 (763)
T KOG0944|consen 502 TKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIE-MPEELDLSSYR 547 (763)
T ss_pred ccccccccCCceEEEEeeEEEecCceeeeecccee-cchhhchhhhh
Confidence 45678999999999999877664444 45554444 88888887553
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=6.9e-32 Score=303.14 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=147.8
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000342 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1634)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~ 1472 (1634)
.||||+||+..||+.|++.+...... . .......++|.++|+|++.+++.| |+..+.+ .++|+.
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~-~-----------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~--~E~F~~ 84 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEA-I-----------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCN--CETFGQ 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc-c-----------cccccccchHhhceEEEEEEEEEE--CCCcccc--cCccEE
Confidence 68999999999999999998653210 0 001123678999999999987777 6666665 567764
Q ss_pred c-ccchhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCeEEEEEEeecCCc-ccccccccc
Q 000342 1473 N-INASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATL 1550 (1634)
Q Consensus 1473 l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf~~~~-~~~KI~~~v 1550 (1634)
+ ++.. +..+|+++|+.+..++....+. +.. ..+..++..|.++|+||+|||+||.... ...|+.+.+
T Consensus 85 L~l~i~---------~~~~L~e~L~~~~~ee~l~~~~-~~~-~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v 153 (228)
T cd02665 85 YPLQVN---------GYGNLHECLEAAMFEGEVELLP-SDH-SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKL 153 (228)
T ss_pred EEEEEC---------CCCCHHHHHHHhhhhccccccc-ccc-hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEE
Confidence 4 2221 2268999999987665554321 111 2224456779999999999999887543 356777766
Q ss_pred ccccccccccccccCCCCCCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhc-c-CCCCc
Q 000342 1551 AALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMC-E-RGHLQ 1624 (1634)
Q Consensus 1551 ~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~-~-~~~~q 1624 (1634)
. ||..| ....|+|+|||+|.| |||+||+|+..+++||+|||+.|++++. ++|+..+ | ....+
T Consensus 154 ~-FP~~l----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~-~~v~~~~fGg~~~~~ 221 (228)
T cd02665 154 E-FPQII----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSW-EEVERDSFGGGRNPS 221 (228)
T ss_pred E-eeCcc----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCH-HHHhhhccCCCCCCc
Confidence 5 88776 245899999999999 9999999976689999999999999987 8887642 3 34568
Q ss_pred eEEEEEE
Q 000342 1625 PQVLFFE 1631 (1634)
Q Consensus 1625 pYILFYe 1631 (1634)
||||||.
T Consensus 222 AYiLfYv 228 (228)
T cd02665 222 AYCLMYI 228 (228)
T ss_pred eEEEEEC
Confidence 9999993
No 24
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-32 Score=332.37 Aligned_cols=309 Identities=25% Similarity=0.370 Sum_probs=231.3
Q ss_pred CCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC-CccCCcHHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-IHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1294 ~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~-~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
.+.....+||.|+| ||||||+|||+|.|.+..+...+...+... ......|+.|++.++|..++... .+.++.|
T Consensus 155 ~~~~~~l~g~~n~g--~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~---~~~~~sp 229 (492)
T KOG1867|consen 155 STTALGLRGLRNLG--STCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH---NRTPYSP 229 (492)
T ss_pred ceeeeccccccccc--HHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC---CCCCcCh
Confidence 34567788999999 799999999999999999888887665422 22335699999999999999653 2789999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEE
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~ 1452 (1634)
..+...+++..|. |.++.|||||||+..+++.+|.+...... ..-... +.. .-.++++..|.|.+.+.
T Consensus 230 ~~~l~~~~k~~~~---~~g~~Qqda~eF~~~~~~~~~~~~~~~~k-----~~~~~~---~~~-~c~~iv~~~F~G~L~~~ 297 (492)
T KOG1867|consen 230 FELLNLVWKHSPN---LAGYEQQDAHEFLIALLDRLHREKDDCGK-----SLIASQ---SNK-QCPCIVHTIFSGTLQSD 297 (492)
T ss_pred HHHHHHHHHhCcc---cccccccchHHHHHHhccccccccccccc-----cccccc---CCc-ccccccceeecceeccc
Confidence 9999999988776 88899999999999999999998711100 000000 000 12789999999999999
Q ss_pred EeccCCCcccccccccceeec---ccchhhhhhhhhcccCCHHHHHHHHhcccccccC--CCCCCCCccc--eEEEEeec
Q 000342 1453 MNCYSCGLESRHLKYTSFFHN---INASALRTMKVMCAESSLDELLNLVEMNHQLACD--PGAGGCEKLN--YIHHILST 1525 (1634)
Q Consensus 1453 i~C~~C~~~S~~~~~~sf~~l---I~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd--~~c~~Cgk~~--~kq~~Isr 1525 (1634)
++|..|+..|.. +++|+.+ |+..-...... .+..++.+++..+...+...+. ..|..|+.+. .++..|.+
T Consensus 298 v~c~~c~~~S~~--~dpf~disL~i~~~~~~~~~~-~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~ 374 (492)
T KOG1867|consen 298 VTCQTCGSKSTT--YDPFMDISLDIPDQFTSSSVR-SPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRK 374 (492)
T ss_pred eeehhhcceeee--ccCccceeeecchhccCcccc-cchhhhhhhhhhhhhhhhcCcccccccCCccccccccccccccc
Confidence 999999999955 6777754 33211111000 0014577777765533322111 2345687774 56899999
Q ss_pred cCCeEEEEEEeecCCccc--cccccccccccccccccccccC-----C-CCCCcEEEEEEEEEeC----ceEEEEEEeCC
Q 000342 1526 PPHVFTTVLGWQNTCESF--DDITATLAALSPEIDISILYRG-----L-DPKRRHSLVSVVCYYG----QHYHCFAYSHD 1593 (1634)
Q Consensus 1526 LP~VLiIhLkrf~~~~~~--~KI~~~v~~fp~~LDLs~f~~g-----~-~~~~~Y~L~AVV~H~G----GHYtAyVR~~~ 1593 (1634)
+|.+|.+||+||...... .|+...+ .||..|+|.+|+.. . .+...|+|+|||+|+| ||||||+| .
T Consensus 375 lP~~l~~~lkRfe~~~~~~~~ki~~~v-~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r--~ 451 (492)
T KOG1867|consen 375 LPAVLCLHLKRFEHSATGAREKIDSYV-SFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRR--Q 451 (492)
T ss_pred CCceeeeeeccccccccccccccCccc-ccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEE--e
Confidence 999999999987653322 2555555 59999999998763 1 2357999999999999 99999999 6
Q ss_pred CCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEEe
Q 000342 1594 QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEA 1632 (1634)
Q Consensus 1594 ~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeR 1632 (1634)
.+.||+|||+.|+.++. ++|++ .+||+|||.+
T Consensus 452 ~~~~~~~dDs~v~~~s~-~eVl~------~~aylLFY~~ 483 (492)
T KOG1867|consen 452 SGGWFKCDDSTVTKVSE-EEVLS------SQAYLLFYTQ 483 (492)
T ss_pred CCCcEEEcCeEEEEeeH-HHhhh------chhhheehhH
Confidence 79999999999999999 99999 8999999975
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.4e-31 Score=305.15 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=145.1
Q ss_pred chhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCccccccccc
Q 000342 1389 FQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYT 1468 (1634)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~ 1468 (1634)
|..+.||||||||++|||.||+++........ . . +.. ........+|+|.+.+.++|..|++++.+ ++
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~--~-~------~~~-~~~~~~~~~F~~~l~s~i~C~~C~~~s~~--~e 95 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVP--P-S------NIE-IKRLNPLEAFKYTIESSYVCIGCSFEENV--SD 95 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCC--C-C------ccc-ccccCHhHheeeEEEeEEEecCCCCeeee--cc
Confidence 88899999999999999999997643211000 0 0 000 01122457899999999999999999987 45
Q ss_pred ceeec-ccchhhhhhhhhcccCCHHHHHHHHhccc--ccccCCCCCCCCcc-ceEEEEeeccCCeEEEEEEeecCCcccc
Q 000342 1469 SFFHN-INASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKL-NYIHHILSTPPHVFTTVLGWQNTCESFD 1544 (1634)
Q Consensus 1469 sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e--~~~Cd~~c~~Cgk~-~~kq~~IsrLP~VLiIhLkrf~~~~~~~ 1544 (1634)
+|+.+ ++.... ...++++++..+...+ .+.|+ .|+.. ..++..|.++|+||+|||+||....
T Consensus 96 ~~~~L~L~i~~~-------~~~~le~l~~~~~~~~~~e~~C~----~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~--- 161 (245)
T cd02673 96 VGNFLDVSMIDN-------KLDIDELLISNFKTWSPIEKDCS----SCKCESAISSERIMTFPECLSINLKRYKLRI--- 161 (245)
T ss_pred ccceeccccccC-------CcchHHHHHHHhhcccccCccCC----CCCCccceeechhhhCChhhEEeeEeeeecc---
Confidence 55543 322110 1245777777766433 45565 57665 3456779999999999999995422
Q ss_pred ccccccccccccccccccccCCCCCCcEEEEEEEEEeC-----ceEEEEEEeCC-CCcEEEEcCCceEEeCChhhhhhhc
Q 000342 1545 DITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD-QERWIMYDDKTVKVVGSWSDVLSMC 1618 (1634)
Q Consensus 1545 KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~-~~kW~~FDDs~Vt~Vs~weeVLs~~ 1618 (1634)
++...+. + ..+++.+++. ....|+|+|||+|.| ||||||+|... +++||.|||+.|++++. ++|+..
T Consensus 162 ~~~~~~~-~-~~~~~~~~~~---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~-~~v~~~- 234 (245)
T cd02673 162 ATSDYLK-K-NEEIMKKYCG---TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSK-NDVSTN- 234 (245)
T ss_pred ccccccc-c-cccccccccC---CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCH-HHHhhc-
Confidence 1111111 1 2355666653 456899999999999 99999999765 68999999999999998 888841
Q ss_pred cCCCCceEEEEEE
Q 000342 1619 ERGHLQPQVLFFE 1631 (1634)
Q Consensus 1619 ~~~~~qpYILFYe 1631 (1634)
...+||||||+
T Consensus 235 --~~~~aYiLFY~ 245 (245)
T cd02673 235 --ARSSGYLIFYD 245 (245)
T ss_pred --cCCceEEEEEC
Confidence 23689999996
No 26
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-32 Score=326.67 Aligned_cols=286 Identities=20% Similarity=0.278 Sum_probs=226.3
Q ss_pred ccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHH
Q 000342 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSL 1375 (1634)
Q Consensus 1296 s~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L 1375 (1634)
..++..||+|.|+ ||||||.||+|+.+..||+.++.++.. + -.+...++.+||++|..|+.. ..+++...|
T Consensus 189 keTGYVGlrNqGA--TCYmNSLlQslffi~~FRk~Vy~ipTd-~-p~grdSValaLQr~Fynlq~~-----~~PvdTtel 259 (1089)
T COG5077 189 KETGYVGLRNQGA--TCYMNSLLQSLFFIAKFRKDVYGIPTD-H-PRGRDSVALALQRLFYNLQTG-----EEPVDTTEL 259 (1089)
T ss_pred cceeeeeeccCCc--eeeHHHHHHHHHHHHHHHHHhhcCCCC-C-CCccchHHHHHHHHHHHHhcc-----CCCcchHHh
Confidence 4678899999996 999999999999999999999998743 2 234457999999999999964 568999998
Q ss_pred HHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEec
Q 000342 1376 RIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNC 1455 (1634)
Q Consensus 1376 ~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C 1455 (1634)
.+.++ |.+ +...+|||.|||=+.|.|.|+........ ...++.+|-|.+.+.+.|
T Consensus 260 trsfg--Wds---~dsf~QHDiqEfnrVl~DnLEksmrgt~V--------------------Enaln~ifVgkmksyikC 314 (1089)
T COG5077 260 TRSFG--WDS---DDSFMQHDIQEFNRVLQDNLEKSMRGTVV--------------------ENALNGIFVGKMKSYIKC 314 (1089)
T ss_pred hhhcC--ccc---chHHHHHhHHHHHHHHHHHHHHhhcCChh--------------------hhHHhHHHHHHhhceeeE
Confidence 87775 444 66778999999999999999996654322 345789999999999999
Q ss_pred cCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCCCc-cceEEEEeeccC
Q 000342 1456 YSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEK-LNYIHHILSTPP 1527 (1634)
Q Consensus 1456 ~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c~~Cgk-~~~kq~~IsrLP 1527 (1634)
.+-.++|.+ .+.|+++ +++.. ..+|+|.++.|. +++.|.|+. -|- .+.|-..+..+|
T Consensus 315 vnvnyEsar--vedfwdiqlNvK~---------~knLqeSfr~yIqvE~l~GdN~Y~ae~----~GlqdAkKGViFeSlP 379 (1089)
T COG5077 315 VNVNYESAR--VEDFWDIQLNVKG---------MKNLQESFRRYIQVETLDGDNRYNAEK----HGLQDAKKGVIFESLP 379 (1089)
T ss_pred EEechhhhh--HHHHHHHHhcccc---------hhhHHHHHHHhhhheeccCCccccccc----ccchhhccceeeccCc
Confidence 999999887 3456643 33221 146777777765 456666652 232 245678899999
Q ss_pred CeEEEEEEeecC---CccccccccccccccccccccccccCC-----CCCCcEEEEEEEEEeC----ceEEEEEEeCCCC
Q 000342 1528 HVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYRGL-----DPKRRHSLVSVVCYYG----QHYHCFAYSHDQE 1595 (1634)
Q Consensus 1528 ~VLiIhLkrf~~---~~~~~KI~~~v~~fp~~LDLs~f~~g~-----~~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~ 1595 (1634)
+||-|+|+||.. .....||++... ||.+|||.+|.... .....|.|+||++|.| |||+|+++...+|
T Consensus 380 pVlhlqLKRFeyDfe~d~mvKINDryE-FP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg 458 (1089)
T COG5077 380 PVLHLQLKRFEYDFERDMMVKINDRYE-FPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDG 458 (1089)
T ss_pred hHHHHHHHHhccccccCceeeeccccc-CcchhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCC
Confidence 999999987754 345689999987 99999999997521 2237999999999999 9999999988899
Q ss_pred cEEEEcCCceEEeCChhhhhhh-ccCC---------------CCceEEEEEEe
Q 000342 1596 RWIMYDDKTVKVVGSWSDVLSM-CERG---------------HLQPQVLFFEA 1632 (1634)
Q Consensus 1596 kW~~FDDs~Vt~Vs~weeVLs~-~~~~---------------~~qpYILFYeR 1632 (1634)
+||+|||+.|++++. .+|+.. +|+. ..+||||.|-|
T Consensus 459 ~WykfdDtrVtrat~-kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlR 510 (1089)
T COG5077 459 RWYKFDDTRVTRATE-KEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLR 510 (1089)
T ss_pred CceeecceehhhHHH-HHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeeh
Confidence 999999999999998 788764 3321 23579999976
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2e-30 Score=289.48 Aligned_cols=217 Identities=22% Similarity=0.341 Sum_probs=156.8
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000342 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1634)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~ 1472 (1634)
.||||+|||..||+.|+.++...... ........+.+.++|+|.+.+.+.|..|+..+.......++
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l- 87 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFL- 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeE-
Confidence 79999999999999999987653210 01122235789999999999999999998766553322222
Q ss_pred cccchhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCC----ccceEEEEeeccCCeEEEEEEeecCC--cccccc
Q 000342 1473 NINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE----KLNYIHHILSTPPHVFTTVLGWQNTC--ESFDDI 1546 (1634)
Q Consensus 1473 lI~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cg----k~~~kq~~IsrLP~VLiIhLkrf~~~--~~~~KI 1546 (1634)
.++.+... ....+|.++|+.++..+...- ..|..|+ ....++..|.++|++|+|+|.|+... ....|+
T Consensus 88 ~l~~~~~~-----~~~~~l~~~l~~~~~~e~~~~-~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~ 161 (255)
T cd02257 88 SLPLPVKG-----LPQVSLEDCLEKFFKEEILEG-DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKL 161 (255)
T ss_pred EeeccCCC-----CCCCcHHHHHHHhhhhhccCC-CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccC
Confidence 23322110 023799999999886544321 2234565 23456788999999999999887653 234566
Q ss_pred cccccccccccccccccc-------CCCCCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhh
Q 000342 1547 TATLAALSPEIDISILYR-------GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDV 1614 (1634)
Q Consensus 1547 ~~~v~~fp~~LDLs~f~~-------g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeV 1614 (1634)
...+. ||..|++..++. .......|+|+|||+|.| |||+||+|...+++||+|||..|++++. +++
T Consensus 162 ~~~v~-~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~-~~~ 239 (255)
T cd02257 162 NTKVS-FPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSE-EEV 239 (255)
T ss_pred CCeEe-CCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCH-HHh
Confidence 66655 999999987753 234567999999999998 8999999976569999999999999987 666
Q ss_pred hhhccCCCCceEEEEEE
Q 000342 1615 LSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1615 Ls~~~~~~~qpYILFYe 1631 (1634)
+.. .....+||||||+
T Consensus 240 ~~~-~~~~~~~yll~Y~ 255 (255)
T cd02257 240 LEF-GSLSSSAYILFYE 255 (255)
T ss_pred hhc-cCCCCceEEEEEC
Confidence 431 3345799999995
No 28
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-32 Score=326.38 Aligned_cols=293 Identities=19% Similarity=0.283 Sum_probs=223.5
Q ss_pred CccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC--CccCCcHHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1295 GIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1295 gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
+.....+||+|-| +|||||+++|-|+++|.+|+.++......+ .-.++..++|.||.+|..+..+ +-..+-|
T Consensus 90 Rpp~gfVGLKNag--atcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s----~lQyyVP 163 (944)
T KOG1866|consen 90 RPPEGFVGLKNAG--ATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAAS----QLQYYVP 163 (944)
T ss_pred CCCcceeeecCCC--chHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHH----hhhhhcc
Confidence 4556678999999 599999999999999999998887654311 1112234899999999999875 5678899
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEE
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~ 1452 (1634)
..|.+.+.- ++ ......+||||-||+..|||.|.+.++...- ..+..+.|+|.+..+
T Consensus 164 eg~Wk~Fr~-~~--~pln~reqhDA~eFf~sLld~~De~LKklg~--------------------p~lf~n~f~G~ysdq 220 (944)
T KOG1866|consen 164 EGFWKQFRL-WG--EPLNLREQHDALEFFNSLLDSLDEALKKLGH--------------------PQLFSNTFGGSYSDQ 220 (944)
T ss_pred hhHHHHhhc-cC--CccchHhhhhHHHHHHHHHHHHHHHHHHhCC--------------------cHHHHHHhcCccchh
Confidence 998777754 33 2355679999999999999999999877533 456788999999999
Q ss_pred EeccCCCcccccccccceeecccchhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCCCccce--EEEEee
Q 000342 1453 MNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLNY--IHHILS 1524 (1634)
Q Consensus 1453 i~C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c~~Cgk~~~--kq~~Is 1524 (1634)
-.|..|-+.-.. .++|. .+++.. .-.+|++.|++|. +.+.|+|+ +|.++.. +++.|.
T Consensus 221 KIC~~CpHRY~~--eE~F~-~l~l~i--------~~~nLeesLeqfv~gevlEG~nAYhCe----KCdeK~~TvkRt~ik 285 (944)
T KOG1866|consen 221 KICQGCPHRYEC--EESFT-TLNLDI--------RHQNLEESLEQFVKGEVLEGANAYHCE----KCDEKVDTVKRTCIK 285 (944)
T ss_pred hhhccCCcccCc--cccce-eeeeec--------ccchHHHHHHHHHHHHHhcCcchhhhh----hhhhhhHhHHHHHHh
Confidence 999999877644 33444 333221 1257888887775 56789998 4987743 588899
Q ss_pred ccCCeEEEEEEeecC---Ccccccccccccccccccccccccc-C-----------------CCCCCcEEEEEEEEEeC-
Q 000342 1525 TPPHVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYR-G-----------------LDPKRRHSLVSVVCYYG- 1582 (1634)
Q Consensus 1525 rLP~VLiIhLkrf~~---~~~~~KI~~~v~~fp~~LDLs~f~~-g-----------------~~~~~~Y~L~AVV~H~G- 1582 (1634)
+||.||+|||+||.+ ++...|.++.+. ||.+|||.||.. | ....++|+|+||++|+|
T Consensus 286 ~LPsvl~IqLkRF~yD~e~~~~iK~n~~fr-FP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq 364 (944)
T KOG1866|consen 286 KLPSVLAIQLKRFDYDWERECAIKFNDYFR-FPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ 364 (944)
T ss_pred hCChhheehhhhccchhhhccccccchhcc-cchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc
Confidence 999999999988765 334467777776 999999999962 1 11246999999999999
Q ss_pred ---ceEEEEEEe---CCCCcEEEEcCCceEEeCChhhhhhhccC--------------CCCceEEEEEEec
Q 000342 1583 ---QHYHCFAYS---HDQERWIMYDDKTVKVVGSWSDVLSMCER--------------GHLQPQVLFFEAV 1633 (1634)
Q Consensus 1583 ---GHYtAyVR~---~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~--------------~~~qpYILFYeRV 1633 (1634)
|||++|+++ ..+++||+|||..|++++- .++-..|-+ +...||||||+|+
T Consensus 365 AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~-n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 365 ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKM-NEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERM 434 (944)
T ss_pred ccCcchhhhhhhhccCCCCceEeccCccccccch-hhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHh
Confidence 999999985 3468999999999999875 444443332 3467999999985
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-30 Score=309.36 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=107.5
Q ss_pred cCCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCcc-C----------------CcHHHHHHHHH
Q 000342 1292 NVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHV-G----------------EPCVVCALYEI 1354 (1634)
Q Consensus 1292 s~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~-~----------------~~cv~~aL~~L 1354 (1634)
..+.-.+..+||.|+| ||||+|||+|+|+.+|.||+.|........... . ...++.+|..+
T Consensus 197 ie~~~~~~VrGL~NLG--NTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~ 274 (877)
T KOG1873|consen 197 IEKRRGYIVRGLTNLG--NTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANL 274 (877)
T ss_pred cccccccccccccccc--chhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhh
Confidence 4455567778999999 899999999999999999999988654321110 0 01234444442
Q ss_pred HHHHhhccCCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCC-C----CCCCcccccc-c
Q 000342 1355 FTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGS-N----VSDTESVESN-C 1428 (1634)
Q Consensus 1355 F~~L~~~s~g~~~~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~-~----~~~~es~es~-~ 1428 (1634)
. .|.. +...++.|..|+..|+...|. |.+++||||||.|++|||.|..|..... . ....+...-. +
T Consensus 275 ~-e~~e----~~ksv~~Pr~lF~~~C~k~pq---F~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~sc 346 (877)
T KOG1873|consen 275 L-EMSE----TTKSVITPRTLFGQFCSKAPQ---FRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSC 346 (877)
T ss_pred h-hhhh----ccCCccCHHHHHHHHHHhCCc---ccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhh
Confidence 2 2221 256799999999999998887 9999999999999999999977642211 0 0011111000 0
Q ss_pred C--C-----CCccCCCCccccccccceEEEEEeccCCCcc
Q 000342 1429 M--G-----SWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1634)
Q Consensus 1429 ~--g-----~w~~~~~~SiI~~LF~G~l~s~i~C~~C~~~ 1461 (1634)
. + +..-.....++-..|.|.+.+++.|..|...
T Consensus 347 le~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~vs 386 (877)
T KOG1873|consen 347 LECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACDVS 386 (877)
T ss_pred hhccchhhcccccccCCcccccccCCCcccchhhhcccee
Confidence 0 0 0001112455668999999999999999855
No 30
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-29 Score=286.78 Aligned_cols=202 Identities=18% Similarity=0.307 Sum_probs=155.3
Q ss_pred CcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCC--ccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000342 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHI--HVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1634)
Q Consensus 1300 ~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~--~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~ 1377 (1634)
.+||+|+| |+||+|||||+|++...|...+....+.... .....|+.|.|.+|...|...........+.|..|+.
T Consensus 303 ~~GliNlG--NsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~ 380 (749)
T COG5207 303 YVGLINLG--NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKM 380 (749)
T ss_pred ccceEecC--CeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHH
Confidence 68999999 8999999999999999888776654433221 2234589999999999887654333677899999999
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1378 aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
.+++-++. |....||||+|||.+||+.|.+.+... ..+.|+++|...+..++.|..
T Consensus 381 ~igq~h~e---Fg~~~QQDA~EFLlfLL~kirk~~~S~---------------------~~~~It~lf~Fe~e~rlsC~~ 436 (749)
T COG5207 381 LIGQDHPE---FGKFAQQDAHEFLLFLLEKIRKGERSY---------------------LIPPITSLFEFEVERRLSCSG 436 (749)
T ss_pred HHcCCchh---hhhhhhhhHHHHHHHHHHHHhhccchh---------------------cCCCcchhhhhhhcceecccc
Confidence 99876655 999999999999999999999854321 145588999999999999999
Q ss_pred CCcccccccccceee-cccchhhhhhhhhcccCCHHHHHHHHhccc--ccccCCCCCCCCccce--EEEEeeccCCeEEE
Q 000342 1458 CGLESRHLKYTSFFH-NINASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKLNY--IHHILSTPPHVFTT 1532 (1634)
Q Consensus 1458 C~~~S~~~~~~sf~~-lI~~~~l~~~k~~~~~~SLedlLk~~~~~e--~~~Cd~~c~~Cgk~~~--kq~~IsrLP~VLiI 1532 (1634)
|+.++.. |++... .|... ......++.++++.|+..+ .|.|+ +|+.+.. ++..|..+|++|||
T Consensus 437 C~~v~yS--ye~~~~i~i~le------~n~E~~di~~~v~a~f~pdtiE~~Ce----nCk~K~~a~~k~~~kslPk~LIl 504 (749)
T COG5207 437 CMDVSYS--YESMLMICIFLE------GNDEPQDIRKSVEAFFLPDTIEWSCE----NCKGKKKASRKPFIKSLPKYLIL 504 (749)
T ss_pred ccccccc--ccceEEEEeecc------cCcchhhHHHHHHheECccceeeehh----hhcCcccccccchhhccCceeEE
Confidence 9999887 444432 24432 2223467889999999888 56775 6877644 45679999999999
Q ss_pred EEEeecC
Q 000342 1533 VLGWQNT 1539 (1634)
Q Consensus 1533 hLkrf~~ 1539 (1634)
+..|+.-
T Consensus 505 q~~R~~l 511 (749)
T COG5207 505 QVGRYSL 511 (749)
T ss_pred ecceeec
Confidence 9865543
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-27 Score=311.48 Aligned_cols=318 Identities=22% Similarity=0.335 Sum_probs=234.2
Q ss_pred CCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccC-----CcHHHHHHHHHHHHHhhccCCCCC
Q 000342 1293 VNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVG-----EPCVVCALYEIFTALSIASTDTRK 1367 (1634)
Q Consensus 1293 ~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~-----~~cv~~aL~~LF~~L~~~s~g~~~ 1367 (1634)
..+...+.+||.|+| ||||||+.+|||.+.+.++++|+........+.. ...+..++..+...++.. ..
T Consensus 239 ~~~~~~g~~Gl~nlG--ntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~----~~ 312 (842)
T KOG1870|consen 239 SSPSERGETGLSNLG--NTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSG----NK 312 (842)
T ss_pred cCCCcccccccccCC--ccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccC----Cc
Confidence 445667789999999 7999999999999999999999986543211211 225677888888888854 23
Q ss_pred cccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccc-------cccCCCCccC--CCC
Q 000342 1368 EAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVE-------SNCMGSWDCT--NSA 1438 (1634)
Q Consensus 1368 ~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~e-------s~~~g~w~~~--~~~ 1438 (1634)
..+.|..++..+....+. |.++.|||.+||+.++||.||+.+......+.....+ ....+.|... .+.
T Consensus 313 ~~v~~~~~~~~~~~~a~~---~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~ 389 (842)
T KOG1870|consen 313 SAVAPTSFRTSLASFASE---FSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNR 389 (842)
T ss_pred cccCchhhhhhhhhcccc---ccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhcc
Confidence 489999999999887665 9999999999999999999999997765432221111 1122234432 357
Q ss_pred ccccccccceEEEEEeccCCCcccccccccceeec---cc----------------------------------------
Q 000342 1439 CIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---IN---------------------------------------- 1475 (1634)
Q Consensus 1439 SiI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~l---I~---------------------------------------- 1475 (1634)
++|.++|.|.+.+.+.|..|+..+.+. ++|.++ ++
T Consensus 390 s~i~d~~~~~~~S~~~c~~C~~~svt~--d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l 467 (842)
T KOG1870|consen 390 SVIVDLFDGTYKSTLQCPTCGKVSVTF--DPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYL 467 (842)
T ss_pred ceeeeeecceecccccCccCCCceEEe--eccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHH
Confidence 899999999999999999999886653 221110 00
Q ss_pred --------------------------------------------------------------------------------
Q 000342 1476 -------------------------------------------------------------------------------- 1475 (1634)
Q Consensus 1476 -------------------------------------------------------------------------------- 1475 (1634)
T Consensus 468 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 547 (842)
T KOG1870|consen 468 SRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSK 547 (842)
T ss_pred HHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCcc
Confidence
Q ss_pred -----------c--h--------------------------------hhhhhh---------------------------
Q 000342 1476 -----------A--S--------------------------------ALRTMK--------------------------- 1483 (1634)
Q Consensus 1476 -----------~--~--------------------------------~l~~~k--------------------------- 1483 (1634)
. . .+....
T Consensus 548 ~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~ 627 (842)
T KOG1870|consen 548 LFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLE 627 (842)
T ss_pred ccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchh
Confidence 0 0 000000
Q ss_pred ---------------------------------------------------------------hhcccCCHHHHHHHHhc
Q 000342 1484 ---------------------------------------------------------------VMCAESSLDELLNLVEM 1500 (1634)
Q Consensus 1484 ---------------------------------------------------------------~~~~~~SLedlLk~~~~ 1500 (1634)
......+|.+|+..|+.
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~ 707 (842)
T KOG1870|consen 628 CLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSE 707 (842)
T ss_pred hccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcc
Confidence 00112367888887764
Q ss_pred c------cccccCCCCCCCCcc--ceEEEEeeccCCeEEEEEEeecCCccc-ccccccccccccc-ccccccccCCCCCC
Q 000342 1501 N------HQLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPE-IDISILYRGLDPKR 1570 (1634)
Q Consensus 1501 ~------e~~~Cd~~c~~Cgk~--~~kq~~IsrLP~VLiIhLkrf~~~~~~-~KI~~~v~~fp~~-LDLs~f~~g~~~~~ 1570 (1634)
. +.|.|+ +|.+. ++++..++++|+||||||+||...... .|+...+ .||.. ||+++|+.+.+. .
T Consensus 708 ~E~L~~~~~w~C~----~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v-~fPi~~ld~s~~~~~~~~-~ 781 (842)
T KOG1870|consen 708 PETLGKDDRWYCP----QCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKV-EFPLGSLDLSEFVVNKEQ-V 781 (842)
T ss_pred hhcCCccccccCh----HHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccc-cCCCcCCCcchhhccCcc-c
Confidence 3 455665 68766 567889999999999999988765443 4554444 47765 999999876555 8
Q ss_pred cEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEEecC
Q 000342 1571 RHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEAVN 1634 (1634)
Q Consensus 1571 ~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYeRVn 1634 (1634)
.|+|+||++|+| ||||||+|+..+++||.|||+.|+.+++ +++.. ..||+|||+|.+
T Consensus 782 ~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~-~~i~t------~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 782 LYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDE-DEIDT------EAAYVLFYRRLD 842 (842)
T ss_pred eeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCCh-hhccc------ccceEEEEEecC
Confidence 999999999999 9999999988899999999999999998 67766 789999999974
No 32
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=3.4e-27 Score=272.69 Aligned_cols=228 Identities=20% Similarity=0.300 Sum_probs=164.2
Q ss_pred ccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000342 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1634)
Q Consensus 1298 i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~ 1377 (1634)
+...||.|.| .|||+||+||+|+++|+||+.+.. ..+.+..+.|++|+|+.||..
T Consensus 13 t~~~gl~~~~--~~~y~n~~lq~~~~~~~~~~~~~~---~~~~~~~~~~l~~el~~lfs~-------------------- 67 (268)
T cd02672 13 TNYAGLENHI--TNSYCNSLLQLLYFIPPFRNFTAI---ILVACPKESCLLCELGYLFST-------------------- 67 (268)
T ss_pred ccccccccCC--ccchHHHHHHHHHhcHHHHHHHHh---hcccCCcCccHHHHHHHHHHH--------------------
Confidence 4578999999 599999999999999999997322 234466677999999999911
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1378 aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
+ .+-|-.+|++.++.+.... + ..
T Consensus 68 -~-----------------iq~F~~fll~~i~~~~~~~-----------------------------~----------~~ 90 (268)
T cd02672 68 -L-----------------IQNFTRFLLETISQDQLGT-----------------------------P----------FS 90 (268)
T ss_pred -H-----------------HHHHHHHHHHHHHHHhccc-----------------------------C----------CC
Confidence 1 0446688899988753220 0 56
Q ss_pred CCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhccc---ccccCCCCCCCCcc--ceEEEEeeccCC---
Q 000342 1458 CGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKL--NYIHHILSTPPH--- 1528 (1634)
Q Consensus 1458 C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e---~~~Cd~~c~~Cgk~--~~kq~~IsrLP~--- 1528 (1634)
|+.++.+ .+.++.+ ++.+... .....+|.+||+.+...+ .+.|+ .|++. ..++..|.++|+
T Consensus 91 C~~~s~~--~~~~~~LsLpip~~~----~~~~~sl~~cL~~~~~~E~~~~~~C~----~C~~~~~a~k~~~i~~lP~~L~ 160 (268)
T cd02672 91 CGTSRNS--VSLLYTLSLPLGSTK----TSKESTFLQLLKRSLDLEKVTKAWCD----TCCKYQPLEQTTSIRHLPDILL 160 (268)
T ss_pred CCceeec--cccceeeeeecCccc----cccCCCHHHHHHHHhhhhhccccccc----ccCcccccEEEEEeecCCCccc
Confidence 8888776 3445443 2222111 123479999999987543 45564 57766 457889999999
Q ss_pred -eEEEEEEeecCCcc--------ccccccccccccccccccccc-cCCCCCCcEEEEEEEEEeC-----ceEEEEEEeCC
Q 000342 1529 -VFTTVLGWQNTCES--------FDDITATLAALSPEIDISILY-RGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD 1593 (1634)
Q Consensus 1529 -VLiIhLkrf~~~~~--------~~KI~~~v~~fp~~LDLs~f~-~g~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~ 1593 (1634)
||+|||+||..... ..++.. .+.||..+++.... .+......|+|+|||+|.| ||||||||...
T Consensus 161 ~VL~i~lkrf~~~~~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~ 239 (268)
T cd02672 161 LVLVINLSVTNGEFDDINVVLPSGKVMQN-KVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVN 239 (268)
T ss_pred ceEEEEEeccChhhcccCcceeEEEecCC-eecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccC
Confidence 99999999875321 123333 34577776665433 2334457899999999987 89999999643
Q ss_pred ----CCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1594 ----QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1594 ----~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
.++||+|||..|++|++ .||||||+
T Consensus 240 ~~~~~~~WylFND~~V~~vs~-------------~aYiLfY~ 268 (268)
T cd02672 240 EESTHGRWYLFNDFLVTPVSE-------------LAYILLYQ 268 (268)
T ss_pred CCCCCCcEEEecCeEEEEcCc-------------hheeeecC
Confidence 68999999999999987 69999995
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=308.10 Aligned_cols=298 Identities=20% Similarity=0.272 Sum_probs=225.0
Q ss_pred cCCCccccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccC
Q 000342 1292 NVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1634)
Q Consensus 1292 s~~gs~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vs 1371 (1634)
++......++||.|+| |||||||+||+|++++.||+.++.+............++.+|+.||..|+.+ ..++|.
T Consensus 162 d~k~~tg~~vGL~N~G--aTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s----~~k~Vd 235 (1093)
T KOG1863|consen 162 DSKRLTGFPVGLKNLG--ATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMS----KRKYVD 235 (1093)
T ss_pred hhhhcCCCCccccCCC--ceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhc----CCCCcC
Confidence 4555667789999999 6999999999999999999999998842121222335899999999999976 556999
Q ss_pred cHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEE
Q 000342 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFE 1451 (1634)
Q Consensus 1372 P~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s 1451 (1634)
|..+...+.... ....+|||+|||+..|+|.|.+.+..... ...|.++|.|.+.+
T Consensus 236 t~~~~~~~~~~~-----~~~~~QqDvqEf~~~l~d~LE~~~~~~~~--------------------~~~l~~lf~g~~~~ 290 (1093)
T KOG1863|consen 236 TSELTKSLGWDS-----NDSFEQQDVQEFLTKLLDWLEDSMIDAKV--------------------ENTLQDLFTGKMKS 290 (1093)
T ss_pred chhhhhhhhccc-----ccHHhhhhHHHHHHHHHHHHHhhccchhh--------------------hhhhhhhhcCCcce
Confidence 999988887532 34678999999999999999998765421 44588999999999
Q ss_pred EEeccCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHhcccccccCC-CCCCCCccc--eEEEEeeccC
Q 000342 1452 RMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQLACDP-GAGGCEKLN--YIHHILSTPP 1527 (1634)
Q Consensus 1452 ~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~-~c~~Cgk~~--~kq~~IsrLP 1527 (1634)
.+.|..|+..+.. .+.|..+ ++... ..++.+.|..|+..+...-|. -|.+|...+ .+...+..+|
T Consensus 291 ~i~c~~~~~~s~r--~e~f~d~ql~~~g---------~~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lP 359 (1093)
T KOG1863|consen 291 VIKCIDVDFESSR--SESFLDLQLNGKG---------VKNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLP 359 (1093)
T ss_pred EEEEEeeeeeccc--cccccCccccccc---------hhhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCC
Confidence 9999999999955 3455533 22211 134667777766544433222 134676664 3457889999
Q ss_pred CeEEEEEEeecC---CccccccccccccccccccccccccC--C--CCC-CcEEEEEEEEEeC----ceEEEEEEeCCCC
Q 000342 1528 HVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYRG--L--DPK-RRHSLVSVVCYYG----QHYHCFAYSHDQE 1595 (1634)
Q Consensus 1528 ~VLiIhLkrf~~---~~~~~KI~~~v~~fp~~LDLs~f~~g--~--~~~-~~Y~L~AVV~H~G----GHYtAyVR~~~~~ 1595 (1634)
+||.|+|.||.. .+...|+...+. ||..|+|.+++.. . ... +.|+|.||.+|.| |||++|++....+
T Consensus 360 pvl~~qL~Rf~~~~~~~~~~Ki~d~~~-fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~ 438 (1093)
T KOG1863|consen 360 PVLFIQLMRFEYDFSTGQKIKINDKFE-FPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDG 438 (1093)
T ss_pred chhhhhhhheeeeccCCceeehhhccC-CccccccchhccccchhhhhccceeccchhhcccccccCccceeeecchhhc
Confidence 999999988765 345577877776 9999999988652 1 122 4999999999988 9999999988899
Q ss_pred cEEEEcCCceEEeCChhhhhh-hccCCC---------CceEEEEEEec
Q 000342 1596 RWIMYDDKTVKVVGSWSDVLS-MCERGH---------LQPQVLFFEAV 1633 (1634)
Q Consensus 1596 kW~~FDDs~Vt~Vs~weeVLs-~~~~~~---------~qpYILFYeRV 1633 (1634)
+|+.|||..|+.++. ..|+. .++... ..||+|+|.|.
T Consensus 439 ~w~kfdd~~v~~~~~-~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 439 KWVKFDDLVVTVVSE-KEALEQNYGTEEIELSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred cceeccCceeeeccH-HHHHHhhCCCcchhhhcccccCCcceEEEEec
Confidence 999999999999998 45544 333211 11799999874
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.93 E-value=8.7e-25 Score=256.55 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=200.0
Q ss_pred cCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHh-hccCCCCCcccCcHHHHHHH
Q 000342 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALS-IASTDTRKEAVAPTSLRIAL 1379 (1634)
Q Consensus 1301 ~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~-~~s~g~~~~~vsP~~L~~aL 1379 (1634)
.||.|.+ ++||+||+||+|+++|+||+.++... .+..+.|+.|.|+-||.+|. .. ++..+.+..|.++|
T Consensus 1 ~GlEn~~--~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~----~g~~cq~sNflr~l 70 (295)
T PF13423_consen 1 SGLENHI--PNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKA----KGINCQASNFLRAL 70 (295)
T ss_pred CCCcCCC--CcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhc----CCCcChHHHHHHHH
Confidence 4999998 69999999999999999999999854 26667799999999999999 53 56788889999999
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000342 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1634)
Q Consensus 1380 ~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~C~ 1459 (1634)
+.+.. ....+.|+|.++|.++||++|+.++............ -......+.|.++|+......++|..|+
T Consensus 71 ~~~~~---a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~f~~~~~~~~~c~~c~ 140 (295)
T PF13423_consen 71 SWIPE---AAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE-------NSSSSPESSISQLFGTSFETTIRCTSCG 140 (295)
T ss_pred hcCHH---HHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc-------cccCCCcchHHHHhCcceeeeecccccC
Confidence 87532 2445669999999999999999998765431100000 0112236679999999999999999999
Q ss_pred cccccccccceeecccchhhhhhhhhcccCCHHHHHHHHhccc---ccccCCCCCCCCccce--EEEEeeccCCeEEEEE
Q 000342 1460 LESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKLNY--IHHILSTPPHVFTTVL 1534 (1634)
Q Consensus 1460 ~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~~~e---~~~Cd~~c~~Cgk~~~--kq~~IsrLP~VLiIhL 1534 (1634)
.++.+........+.++. .....+|.++|+.....+ ...|+ .|++... .+..|.++|+||.|.+
T Consensus 141 ~~~~~~~~~~~~~l~yp~-------~~~~~tf~~~Le~sl~~e~~~~a~C~----~C~~~~~~~~~r~i~~LPpVL~In~ 209 (295)
T PF13423_consen 141 HESVKESSTLVLDLPYPP-------SNSNVTFSQVLEHSLNREQQTRAWCE----KCNKYQPTEQRRTIRSLPPVLSINL 209 (295)
T ss_pred CeEEeecceeeeeccCCC-------CCccchHHHHHHHHHhhccccccccc----ccccccceeeeeeccCCCcEEEEEc
Confidence 988764321111122221 122479999999876543 34675 5888643 4678999999999999
Q ss_pred EeecCCc-cccccccccccccccccccccccC--------CCCCCcEEEEEEEEEeC-----ceEEEEEEeCC--CCcEE
Q 000342 1535 GWQNTCE-SFDDITATLAALSPEIDISILYRG--------LDPKRRHSLVSVVCYYG-----QHYHCFAYSHD--QERWI 1598 (1634)
Q Consensus 1535 krf~~~~-~~~KI~~~v~~fp~~LDLs~f~~g--------~~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~--~~kW~ 1598 (1634)
++.+... ...+....+ .||..+++..++.. .....+|+|.|+|||.| ||||+|||-.. +.+||
T Consensus 210 ~~~~~~~~w~~~~~~~~-~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~ 288 (295)
T PF13423_consen 210 NRYSEEEFWPKKNWLKI-WIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWY 288 (295)
T ss_pred cCCCcccccccccCCce-ecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEE
Confidence 7665431 122233333 37777888766532 23456999999999999 99999999542 37999
Q ss_pred EEcCCce
Q 000342 1599 MYDDKTV 1605 (1634)
Q Consensus 1599 ~FDDs~V 1605 (1634)
+|||..|
T Consensus 289 lFNDflV 295 (295)
T PF13423_consen 289 LFNDFLV 295 (295)
T ss_pred EECcEeC
Confidence 9999766
No 35
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.92 E-value=9.8e-26 Score=222.38 Aligned_cols=107 Identities=39% Similarity=0.585 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
++|++++++|||+|||++|+|++++||++..+|++|++||+||+++|..++|+++|++||++||+||++|..|+|+|
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--- 77 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--- 77 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---
Confidence 46899999999999999999999999998777899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcc---CccHHHHHHHHHHHhcccCC
Q 000342 142 AHFYANLLYEAAND---GKEYEEVVQECERALAIENP 175 (1634)
Q Consensus 142 a~~~A~~L~~l~~~---~~~Y~~a~~e~~RAL~I~~P 175 (1634)
|++||++|++ ..+|++|+.+|+|||+|++|
T Consensus 78 ----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 78 ----AHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999 55999999999999999999
No 36
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-26 Score=273.00 Aligned_cols=267 Identities=16% Similarity=0.283 Sum_probs=203.2
Q ss_pred ccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000342 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1634)
Q Consensus 1298 i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~ 1377 (1634)
-...||.|... |||+|+.+|+|+..|.|+..++.-. ..++....|.+
T Consensus 85 ~~yvglvnqa~--~~~l~~~~~a~~~~~~~~~~~yts~-------------------------------~~~~et~dlt~ 131 (1203)
T KOG4598|consen 85 HRYVGLVNQAS--NDLLFEQSCAISLHDSGISKCYTSE-------------------------------NDSLETKDLTQ 131 (1203)
T ss_pred cceEeehhhHH--HHHHHHHhhhhccChhhhhhhhCCC-------------------------------cccccchhhHh
Confidence 34679999995 9999999999999999998776311 12333444444
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1378 aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
.|+ |.+ -..++|||.||..+.++|.|+-. |+......+|.+++.|.+...+.|..
T Consensus 132 sfg--w~s---~ea~~qhdiqelcr~mfdalehk--------------------~k~t~~~~li~~ly~g~m~d~v~cl~ 186 (1203)
T KOG4598|consen 132 SFG--WTS---NEAYDQHDVQELCRLMFDALEHK--------------------WKGTEHEKLIQDLYRGTMEDFVACLK 186 (1203)
T ss_pred hcC--CCc---chhhhhhhHHHHHHHHHHHHHhh--------------------hcCchHHHHHHHHhcchHHHHHHHHH
Confidence 454 222 23578999999999999999764 44445577899999999999999999
Q ss_pred CCcccccccccceeecccch--hhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCCCccc--eEEEEeeccC
Q 000342 1458 CGLESRHLKYTSFFHNINAS--ALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLN--YIHHILSTPP 1527 (1634)
Q Consensus 1458 C~~~S~~~~~~sf~~lI~~~--~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c~~Cgk~~--~kq~~IsrLP 1527 (1634)
|+.++.+. +.|+ .|+.. +... .....+++++|..|. +.++|.|+ +|+++. ++-..|..+|
T Consensus 187 c~~e~~~~--d~fl-d~pl~v~pfg~---~~ay~sieeal~afvqpe~ldg~nqy~ce----~ck~k~dahkgl~~~~fp 256 (1203)
T KOG4598|consen 187 CGRESVKT--DYFL-DLPLAVKPFGA---IHAYKSVEEALTAFVQPELLDGSNQYMCE----NCKSKQDAHKGLRITQFP 256 (1203)
T ss_pred cCcccccc--ceee-cccccccCCcc---hhhhhhHHHHHHHhcChhhcCCccHHHHh----hhhhhhhhhcCceeeccc
Confidence 99999973 3444 44432 2211 123368999999986 45788897 588874 5678899999
Q ss_pred CeEEEEEEeecC---CccccccccccccccccccccccccC--------------CC-----------------------
Q 000342 1528 HVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYRG--------------LD----------------------- 1567 (1634)
Q Consensus 1528 ~VLiIhLkrf~~---~~~~~KI~~~v~~fp~~LDLs~f~~g--------------~~----------------------- 1567 (1634)
-+|+|||+||.. ..-..|+++.+. ||..|||..|... .+
T Consensus 257 y~lt~~lkrfdfdy~tmhriklnd~~t-fp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 335 (1203)
T KOG4598|consen 257 YLLTIQLKRFDFDYNTMHRIKLNDKMT-FPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGV 335 (1203)
T ss_pred eeeEEeeecccccchheeeeeeccccc-CcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccc
Confidence 999999987654 233467777776 9999999987520 00
Q ss_pred ------------------------------CCCcEEEEEEEEEeC----ceEEEEEEeCCCCcEEEEcCCceEEeCChhh
Q 000342 1568 ------------------------------PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSD 1613 (1634)
Q Consensus 1568 ------------------------------~~~~Y~L~AVV~H~G----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~wee 1613 (1634)
....|+|++|.+|+| |||+||+++-+++.||.|||.+|+-+.. .+
T Consensus 336 ~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~-~~ 414 (1203)
T KOG4598|consen 336 QSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATP-LE 414 (1203)
T ss_pred cCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCH-HH
Confidence 012799999999999 9999999999999999999999999998 77
Q ss_pred hhhhccC-------CCCceEEEEEEecC
Q 000342 1614 VLSMCER-------GHLQPQVLFFEAVN 1634 (1634)
Q Consensus 1614 VLs~~~~-------~~~qpYILFYeRVn 1634 (1634)
+...+|+ ++..||||+|+||.
T Consensus 415 i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 415 IEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred HHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 8776664 34578999999873
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.6e-24 Score=243.61 Aligned_cols=321 Identities=19% Similarity=0.205 Sum_probs=212.4
Q ss_pred cccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC-CccCCcHHHHHHHHHHHHHhhccC------------
Q 000342 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-IHVGEPCVVCALYEIFTALSIAST------------ 1363 (1634)
Q Consensus 1297 ~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~-~~~~~~cv~~aL~~LF~~L~~~s~------------ 1363 (1634)
.+.|+|++|-| |-|||||+||+|..|+||.+.+-.+..... ...+...++.++..+.+.+...+.
T Consensus 25 ~i~Prg~ink~--n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 25 PIDPRGSINKC--NICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred ccCCccccccc--eeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 37899999999 899999999999999999988877652111 112233456666666665552211
Q ss_pred ------------CCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCC---C---------
Q 000342 1364 ------------DTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV---S--------- 1419 (1634)
Q Consensus 1364 ------------g~~~~~vsP~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~---~--------- 1419 (1634)
..++.++.|..+...+... +.+...+.|.|.||.|||..+||.||+++...... +
T Consensus 103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~ 181 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGL 181 (420)
T ss_pred ccccchhhhhhhcccCccccCCchhhhcccC-CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccc
Confidence 1345566776665555542 34455667899999999999999999998543210 0
Q ss_pred -------CCcccccccC---CCCc-c------------CCCCccccccccceEEEEEeccCCCccccc-ccccceeeccc
Q 000342 1420 -------DTESVESNCM---GSWD-C------------TNSACIVHSLFGMDIFERMNCYSCGLESRH-LKYTSFFHNIN 1475 (1634)
Q Consensus 1420 -------~~es~es~~~---g~w~-~------------~~~~SiI~~LF~G~l~s~i~C~~C~~~S~~-~~~~sf~~lI~ 1475 (1634)
..++.+.... ..|. + .-..++|+++|+|++++.+.-..-+ +|.. .+|.+....|.
T Consensus 182 i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nk-eS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 182 INNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNK-ESATLQPFFTLQLDIQ 260 (420)
T ss_pred ccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccc-cccccCccceeeeeee
Confidence 0011111110 0111 1 0136889999999999988765433 3333 12333333343
Q ss_pred chhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCeEEEEEEeecC--Cccccccccccccc
Q 000342 1476 ASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNT--CESFDDITATLAAL 1553 (1634)
Q Consensus 1476 ~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf~~--~~~~~KI~~~v~~f 1553 (1634)
...+ .+..+++..+...+..---....+-...+.++..|.++|++|++||+||.+ .++..|+.+.+. +
T Consensus 261 ~~~i---------~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~-~ 330 (420)
T KOG1871|consen 261 SEKI---------HSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIE-Y 330 (420)
T ss_pred cccc---------CCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhh-c
Confidence 3222 456666665544333211110011122244578899999999999998754 345567777776 8
Q ss_pred ccccccccccc--CCC-----CCCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCC
Q 000342 1554 SPEIDISILYR--GLD-----PKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG 1621 (1634)
Q Consensus 1554 p~~LDLs~f~~--g~~-----~~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~ 1621 (1634)
|.++.+..-+. ++. -...|+|++||.|+| |||+..+.+...+.|+++||..|+.+.. ++|+. ..+
T Consensus 331 ~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q-~dv~~--~t~ 407 (420)
T KOG1871|consen 331 PWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQ-EDVEK--VTG 407 (420)
T ss_pred cceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccH-hhhcc--ccC
Confidence 88888875443 222 235899999999999 9999999988899999999999999998 89988 455
Q ss_pred CCceEEEEEEecC
Q 000342 1622 HLQPQVLFFEAVN 1634 (1634)
Q Consensus 1622 ~~qpYILFYeRVn 1634 (1634)
..+||+|+|.+.+
T Consensus 408 ~r~~yllyY~~~d 420 (420)
T KOG1871|consen 408 SRTPYLLYYIEAD 420 (420)
T ss_pred ccchheeEeeecC
Confidence 6899999999864
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=2.4e-23 Score=236.06 Aligned_cols=118 Identities=24% Similarity=0.327 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCeEEEEEEeecCCcc-ccccccccccccccccccccccCC
Q 000342 1488 ESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCES-FDDITATLAALSPEIDISILYRGL 1566 (1634)
Q Consensus 1488 ~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~VLiIhLkrf~~~~~-~~KI~~~v~~fp~~LDLs~f~~g~ 1566 (1634)
..+|++||+.|+..+. |.++|+||+|||+||..... ..|+...+. ||..|||.+|+...
T Consensus 79 ~~tLedcLe~~~~~e~-------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~-fP~~Ldl~~~~~~~ 138 (241)
T cd02670 79 GITLEQCLEQYFNNSV-------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKIL-IPDEIDIPDFVADD 138 (241)
T ss_pred cCCHHHHHHHHhchhh-------------------hhhCCCeEEEEEEccccCCCcceeCCcEEC-CCCcCCchhhcccc
Confidence 4799999999886543 88999999999999877543 357776665 99999999986432
Q ss_pred -----------------------CCCCcEEEEEEEEEeC-----ceEEEEEEeCC-----------CCcEEEEcCCceEE
Q 000342 1567 -----------------------DPKRRHSLVSVVCYYG-----QHYHCFAYSHD-----------QERWIMYDDKTVKV 1607 (1634)
Q Consensus 1567 -----------------------~~~~~Y~L~AVV~H~G-----GHYtAyVR~~~-----------~~kW~~FDDs~Vt~ 1607 (1634)
.....|+|+|||+|+| ||||||||+.. ++.|++|||..|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~ 218 (241)
T cd02670 139 PRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRD 218 (241)
T ss_pred cccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccc
Confidence 1235899999999999 99999999764 38999999999887
Q ss_pred eCCh-----hhhhhhccCCCCceEEEEEE
Q 000342 1608 VGSW-----SDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1608 Vs~w-----eeVLs~~~~~~~qpYILFYe 1631 (1634)
+..- ..+.. .+||||||+
T Consensus 219 ~~~~~~~~~~~~~~------~~aYmLFYq 241 (241)
T cd02670 219 GVSNGFNIPAARLL------EDPYMLFYQ 241 (241)
T ss_pred ccccccccchhccc------CCceEEEeC
Confidence 6530 12333 789999996
No 39
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.7e-22 Score=248.06 Aligned_cols=310 Identities=20% Similarity=0.304 Sum_probs=207.2
Q ss_pred ccccCcCccCCCCCCcccch--HHHHHHHhhHHHHHHHhccCCCCCC-ccCCcHHHHHHHHHHHHHhhccCCCCCcccCc
Q 000342 1296 IDVYGAGLKNEVGEYNCFLN--VIIQSLWHLRRFREEFSRRSPSEHI-HVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1634)
Q Consensus 1296 s~i~~~GL~NlG~~NTCYLN--SVLQ~L~hlp~FR~~Ll~~~~~~~~-~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP 1372 (1634)
......|..|.+ ++|+-| ++.|.+..+.+++...+........ .....-++..+.++|........ ....+.|
T Consensus 228 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~i~p 303 (587)
T KOG1864|consen 228 ANERVFGTNNFS--NTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKK--LVGRISP 303 (587)
T ss_pred ccccccCccccC--ccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcc--cccccCc
Confidence 334455777887 699999 9999999999999655554321100 01111233344455543332211 4567889
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCccc----c---cccCCCCccCC-----CCcc
Q 000342 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESV----E---SNCMGSWDCTN-----SACI 1440 (1634)
Q Consensus 1373 ~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~----e---s~~~g~w~~~~-----~~Si 1440 (1634)
..++..+++.... |..++|||||||+.++++.+++-+............ + .+....|.+.. ...+
T Consensus 304 ~~~~~~~~~~~~~---f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~ 380 (587)
T KOG1864|consen 304 TRFISDLIKENEL---FTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENW 380 (587)
T ss_pred chhhhhhhhcCCc---cCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhH
Confidence 9988888776544 999999999999999999999876544321111000 1 11112233322 4789
Q ss_pred ccccccceEEEEEeccCCCcccccccccceeec-ccchhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCC
Q 000342 1441 VHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGC 1513 (1634)
Q Consensus 1441 I~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SLedlLk~~~------~~e~~~Cd~~c~~C 1513 (1634)
++.+|.|++..++.|..|+..+.+ -..|.+. ++.. . .+..++..+|+.|. +++++.|+. |
T Consensus 381 v~~lf~g~l~~et~Clsc~t~T~~--de~f~D~~~~v~--~-----de~~si~~~l~~~~~~e~l~g~nky~c~~----c 447 (587)
T KOG1864|consen 381 VSKLFQGILTNETRCLSCETITSR--DEGFLDLSVAVE--I-----DENTSITNLLKSFSSTETLSGENKYSCEN----C 447 (587)
T ss_pred HHHhhcCeeeeeeeeccccccccc--cccccccceecc--c-----cccccHHHHHHHhcchhhccCCCcccccc----c
Confidence 999999999999999999999887 3455433 2211 0 03467888887764 567888874 5
Q ss_pred Ccc--ceEEEEeeccCCeEEEEEEeecCCccc---cccccccccccccccccccccC-CCCCCcEEEEEEEEEeC-----
Q 000342 1514 EKL--NYIHHILSTPPHVFTTVLGWQNTCESF---DDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG----- 1582 (1634)
Q Consensus 1514 gk~--~~kq~~IsrLP~VLiIhLkrf~~~~~~---~KI~~~v~~fp~~LDLs~f~~g-~~~~~~Y~L~AVV~H~G----- 1582 (1634)
... +.++..+..+|.+|+|||++|.+.+.. .++...+. +|.++.+..-... ..+...|.|+|||||.|
T Consensus 448 ~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~-~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~ 526 (587)
T KOG1864|consen 448 CSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVV-FPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNR 526 (587)
T ss_pred CchhhHHHhccccCCcceeeeehhccccccccccccccccccc-cccceeeccccccccCccceeeEEEEEEeccCCCCC
Confidence 444 456778999999999999998775422 34444443 6666665433322 22236999999999999
Q ss_pred ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEEE
Q 000342 1583 QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631 (1634)
Q Consensus 1583 GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFYe 1631 (1634)
|||+||+|... ..|+.|||+.|+.++. +.|....+ ..+|++||.
T Consensus 527 GHYia~~r~~~-~nWl~fdD~~V~~~s~-~~v~~~~~---~s~~~~~~~ 570 (587)
T KOG1864|consen 527 GHYVAYVKSLD-FNWLLFDDDNVEPISE-EPVSEFTG---SSGDTLFYY 570 (587)
T ss_pred cceEEEEeeCC-CCceecccccccccCc-chhhhccC---CCccceeee
Confidence 99999999543 2399999999999998 88877554 345666654
No 40
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-21 Score=228.25 Aligned_cols=295 Identities=20% Similarity=0.212 Sum_probs=200.8
Q ss_pred cccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc---cCCcHHHHHHHHHHHHHhhccCCCCCcccCcH
Q 000342 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---VGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1634)
Q Consensus 1297 ~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~---~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~ 1373 (1634)
...+.||.|+| ||||||+.+|||..+|+++..+.......... .....+..+++.+|..|... ..+.|.
T Consensus 102 ~~lp~gl~nlg--NtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~------~~v~pi 173 (473)
T KOG1872|consen 102 LPLPVGLPNLG--NTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK------GAVAPI 173 (473)
T ss_pred ccCCccccchh--HHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc------CCcchH
Confidence 45667999999 89999999999999999888776644221111 11235778899999999842 689999
Q ss_pred HHHHHHhhhCCCCccchh------hccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccc
Q 000342 1374 SLRIALSNLYPDSNFFQE------AQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGM 1447 (1634)
Q Consensus 1374 ~L~~aL~~i~p~~~~F~~------g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G 1447 (1634)
.+...+.+.+|. |.. +.||||.|+...++-.+|..+..... .......+..+|++
T Consensus 174 ~llqtl~~~~Pq---fa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~----------------~~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 174 NLLQTLSSQYPQ---FAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE----------------APCLEAEAAAGFGA 234 (473)
T ss_pred HHHHHHHHHhHH---HHHHhhhhhHHHHHHhHhHHHhhhheecccccccc----------------ccchhHHHHHhhcc
Confidence 999999988887 544 78999999999999999997765422 11346778999999
Q ss_pred eEEEEEeccCCCccccccccccee---ecccchhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEee
Q 000342 1448 DIFERMNCYSCGLESRHLKYTSFF---HNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILS 1524 (1634)
Q Consensus 1448 ~l~s~i~C~~C~~~S~~~~~~sf~---~lI~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~Is 1524 (1634)
++..++.|..-........-+.|. +.|+-. ...++..+ ...+.+.+... ++..+-.....+...|+
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~-~~~~k~Gl-~~~~~e~~~K~---------s~~lgr~a~y~k~~~is 303 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKT-VHDMRFGL-KSGLSEEIQKI---------SSILGRPAAYQKVMYIS 303 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeee-echhhhhh-hhhhhhhhhcc---------CcccCCChHHHHHhHhh
Confidence 999999998665554432112222 112211 00000000 01222222110 11112222233456799
Q ss_pred ccCCeEEEEEEeecCCcc---ccccccccccccccccccccccC-------------------------------CC---
Q 000342 1525 TPPHVFTTVLGWQNTCES---FDDITATLAALSPEIDISILYRG-------------------------------LD--- 1567 (1634)
Q Consensus 1525 rLP~VLiIhLkrf~~~~~---~~KI~~~v~~fp~~LDLs~f~~g-------------------------------~~--- 1567 (1634)
++|.+|++++.||..... ..||.+.+. ||..||.-.+|.. .+
T Consensus 304 rlP~ylTvq~vrf~~k~k~~~~akil~~V~-fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~ 382 (473)
T KOG1872|consen 304 RLPEYLTVQEVRFFSKAKIMVVAKILNAVN-FPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERL 382 (473)
T ss_pred cCcccceEEEEEEEeccccchHHHHHHhcc-ChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCccc
Confidence 999999999976654332 345555554 8888887766520 00
Q ss_pred ----------------C-CCcEEEEEEEEEeC-----ceEEEEEEeCCCCcEEEEcCCceEEeCChhhhhhhccCCC-Cc
Q 000342 1568 ----------------P-KRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGH-LQ 1624 (1634)
Q Consensus 1568 ----------------~-~~~Y~L~AVV~H~G-----GHYtAyVR~~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~-~q 1624 (1634)
. ...|+|.|||.|.| |||++++|.. .+.|++|||..|+.+.. +.+++..+++. .+
T Consensus 383 ~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~-e~i~~lsgggd~~~ 460 (473)
T KOG1872|consen 383 KEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLG-ETILSLSGGGDWHS 460 (473)
T ss_pred ccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCceeeccccccccccc-cceeeecCCCccch
Confidence 0 23799999999999 9999999975 46999999999999988 78887666543 57
Q ss_pred eEEEEEEe
Q 000342 1625 PQVLFFEA 1632 (1634)
Q Consensus 1625 pYILFYeR 1632 (1634)
||||+|..
T Consensus 461 ayvllyk~ 468 (473)
T KOG1872|consen 461 AYVLLYKA 468 (473)
T ss_pred hhheeecc
Confidence 89999964
No 41
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.79 E-value=2.4e-19 Score=205.25 Aligned_cols=279 Identities=19% Similarity=0.181 Sum_probs=207.6
Q ss_pred ccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000342 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1634)
Q Consensus 1298 i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~ 1377 (1634)
.+..||.|+. ++=|.|++||+|.|.+++|++|+......+. -..+...|..+.+.+|.... -...++|..+.+
T Consensus 132 pG~VGLnNik--~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~---~~~lv~rl~~l~rklw~~r~--fk~hvSphe~lq 204 (442)
T KOG2026|consen 132 PGFVGLNNIK--ANDYANAVLQALSHVVPLRNYFLLEENYFDN---LTELVQRLGELIRKLWNPRN--FKGHVSPHEFLQ 204 (442)
T ss_pred eeeeccchhh--hHHHHHHHHHHHhccchhhhhhcccccccch---hHHHHHHHHHHHHHhcChhh--hcccCCHHHHHH
Confidence 4557999998 5999999999999999999999986433222 23567788999999997643 678999999999
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000342 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1634)
Q Consensus 1378 aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1634)
++... +...|+.++|.|+-|||.+||+.||..+.... ...|||+..|.|.++-...-..
T Consensus 205 aV~~~--s~k~f~i~~q~DpveFlswllntlhs~l~~~k-------------------~~~SIi~~~fqG~~ri~k~~~~ 263 (442)
T KOG2026|consen 205 AVMKL--SKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-------------------KASSIIHKSFQGEVRIVKEKQG 263 (442)
T ss_pred HHHHH--hhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-------------------CchhHhhHhhcceEEeeeeccc
Confidence 99875 34679999999999999999999999876532 2358999999999876544332
Q ss_pred CC--cccccccccceeec---ccchhhh-h--hhhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEeeccCCe
Q 000342 1458 CG--LESRHLKYTSFFHN---INASALR-T--MKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHV 1529 (1634)
Q Consensus 1458 C~--~~S~~~~~~sf~~l---I~~~~l~-~--~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cgk~~~kq~~IsrLP~V 1529 (1634)
-. .........+|+.+ +|+.++- + .+...+++.|.++|+.|.+...-.- -.-+-.++..+.++|++
T Consensus 264 ~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~------~~~~~~~rf~l~k~P~y 337 (442)
T KOG2026|consen 264 EASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV------VTPKLAMRFRLTKLPRY 337 (442)
T ss_pred cccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeee------cchhhhhheeeecCCce
Confidence 11 11111112355554 3433332 2 2345678999999999876432211 01111267889999999
Q ss_pred EEEEEEeecCCcccccccccccccc-cccccccccc----CCCCCCcEEEEEEEEEeC--ceEEEEEEeCCCCcEEEEcC
Q 000342 1530 FTTVLGWQNTCESFDDITATLAALS-PEIDISILYR----GLDPKRRHSLVSVVCYYG--QHYHCFAYSHDQERWIMYDD 1602 (1634)
Q Consensus 1530 LiIhLkrf~~~~~~~KI~~~v~~fp-~~LDLs~f~~----g~~~~~~Y~L~AVV~H~G--GHYtAyVR~~~~~kW~~FDD 1602 (1634)
||+|++||..+.-.+..+.+++.|| .++|+.++.. ....-+.|.|.|-+.|.- |||...+++...++||..+|
T Consensus 338 lifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e~~~~riqi~~~~s~kW~eiqd 417 (442)
T KOG2026|consen 338 LIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDEDGNFRIQIYDNSSEKWYEIQD 417 (442)
T ss_pred EEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcccCceEEEEEeCCCcceEEecc
Confidence 9999999988777777888888899 6677765532 223347999999999987 99999999999999999999
Q ss_pred CceEEeCC
Q 000342 1603 KTVKVVGS 1610 (1634)
Q Consensus 1603 s~Vt~Vs~ 1610 (1634)
-.|++...
T Consensus 418 l~v~e~~~ 425 (442)
T KOG2026|consen 418 LHVTERLP 425 (442)
T ss_pred cchhhhhh
Confidence 99999776
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.57 E-value=1.3e-14 Score=179.51 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=190.7
Q ss_pred cccCcCccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHH
Q 000342 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1634)
Q Consensus 1297 ~i~~~GL~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~ 1376 (1634)
.+..+||.--+ -+-|.|++||.|+.+|+||..++. |.|..+.|+.|.|.-||.+|..+ .+.++....|.
T Consensus 496 qT~yaGLe~~i--~N~YcNamiQllyfl~~~r~~vl~-----H~C~~e~CL~CELGFLF~Ml~~S----~G~~Cqa~NFl 564 (1118)
T KOG1275|consen 496 QTTYAGLETDI--PNSYCNAMIQLLYFLPPIRSIVLR-----HICTKEFCLLCELGFLFTMLDSS----TGDPCQANNFL 564 (1118)
T ss_pred cceeeccCCCC--chHHHHHHHHHHHhccHHHHHHHc-----CccchhHHHHHHHHHHHHHHhhh----cCCccchhHHH
Confidence 35567887777 488999999999999999999987 46777889999999999999965 34588888888
Q ss_pred HHHhhhCCCCc---cchhh----------ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccc
Q 000342 1377 IALSNLYPDSN---FFQEA----------QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHS 1443 (1634)
Q Consensus 1377 ~aL~~i~p~~~---~F~~g----------~QQDA~EFL~~LLD~Lheel~~~~~~~~~es~es~~~g~w~~~~~~SiI~~ 1443 (1634)
++|+...-... .+... --|||.-|.....+.-.+ +........ .....+...+-+....+.+
T Consensus 565 raf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~----s~~~~~~~~~vn~~~~l~q 639 (1118)
T KOG1275|consen 565 RAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQ----SESVDGESFKVNYAPVLQQ 639 (1118)
T ss_pred HHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhh----hhcccCceeeecchhHHHH
Confidence 88876422111 11100 012222221111111100 000000000 0000111223344678999
Q ss_pred cccceEEEEEeccCCCcccccccccceeecccchhhhhhhhhcccCCHHHHHHHHh---cccccccCCCCCCCCccceE-
Q 000342 1444 LFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE---MNHQLACDPGAGGCEKLNYI- 1519 (1634)
Q Consensus 1444 LF~G~l~s~i~C~~C~~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~---~~e~~~Cd~~c~~Cgk~~~k- 1519 (1634)
.|+........|..|+..+.+.. ......+.-......+.......|.+.|+... ..-+-.|+ .|++....
T Consensus 640 ~F~~~~e~~~~Cg~C~~~~~~~k-~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~----~C~k~ep~~ 714 (1118)
T KOG1275|consen 640 SFCQEIEKSLRCGECGDEKQKSK-SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCE----TCTKPEPTS 714 (1118)
T ss_pred HhhhHHHHhhhcccccchhhhhh-hhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccc----cccCCCCcc
Confidence 99999999999999998877643 11111121111111112233467888887633 33346787 49888553
Q ss_pred -EEEeeccCCeEEEEEEeecCC-----cccccccccccccccccccccc------cc-----------CCCCC--CcEEE
Q 000342 1520 -HHILSTPPHVFTTVLGWQNTC-----ESFDDITATLAALSPEIDISIL------YR-----------GLDPK--RRHSL 1574 (1634)
Q Consensus 1520 -q~~IsrLP~VLiIhLkrf~~~-----~~~~KI~~~v~~fp~~LDLs~f------~~-----------g~~~~--~~Y~L 1574 (1634)
+..+..+|.+|.|...-+... ..+.+..+.+ .+|..+-+... +. +.++. .+|+|
T Consensus 715 q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~v-WLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL 793 (1118)
T KOG1275|consen 715 QKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDV-WLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYEL 793 (1118)
T ss_pred cccccccCcceeeeeeeccchhhhhhHHHhhcccccc-ccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEe
Confidence 567999999999988221110 0111222222 36666554421 11 11233 59999
Q ss_pred EEEEEEeC-----ceEEEEEEe--------CCCCcEEEEcCCceEEeCChhhhhhhccCCCCceEEEEE
Q 000342 1575 VSVVCYYG-----QHYHCFAYS--------HDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFF 1630 (1634)
Q Consensus 1575 ~AVV~H~G-----GHYtAyVR~--------~~~~kW~~FDDs~Vt~Vs~weeVLs~~~~~~~qpYILFY 1630 (1634)
.|+|+|.| +|.+++|+- +.+.+||.|||..|.+|++ ++.+.+-+.+ ..|-||+|
T Consensus 794 ~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite-~EAl~~~~~W-KvP~Il~Y 860 (1118)
T KOG1275|consen 794 DAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITE-EEALHFDGPW-KVPAILYY 860 (1118)
T ss_pred eeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCCh-HHheEeccCc-cCcEEEEE
Confidence 99999998 799999983 3357999999999999999 8888755544 56999999
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.18 E-value=6.1e-06 Score=92.80 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=83.9
Q ss_pred CccccccccceEEEEEeccCCCcccccc---cccceeecccchhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCCC
Q 000342 1438 ACIVHSLFGMDIFERMNCYSCGLESRHL---KYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE 1514 (1634)
Q Consensus 1438 ~SiI~~LF~G~l~s~i~C~~C~~~S~~~---~~~sf~~lI~~~~l~~~k~~~~~~SLedlLk~~~~~e~~~Cd~~c~~Cg 1514 (1634)
...|..+|.-.+.=...|..||+..... .-.+|-.+++.-. .+. + .. -..|..|+
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdwh-----------PLn----A------~h-~~pCn~C~ 177 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDWH-----------PLN----A------VH-FGPCNSCN 177 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCCC-----------ccc----c------cc-cCCCcccC
Confidence 4567899999999999999999875431 1122322222110 011 0 00 12456798
Q ss_pred ccceE-EEEeeccCCeEEEEEEeecCCccccccccccccccccccccccccCCCCCCcEEEEEEEEEeC--ceEEEEEEe
Q 000342 1515 KLNYI-HHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG--QHYHCFAYS 1591 (1634)
Q Consensus 1515 k~~~k-q~~IsrLP~VLiIhLkrf~~~~~~~KI~~~v~~fp~~LDLs~f~~g~~~~~~Y~L~AVV~H~G--GHYtAyVR~ 1591 (1634)
.+..+ ++.+.+.|+||++|+.= .+|.. |+..| +-.-++..|.+.+||-+.- -|+++++++
T Consensus 178 ~ksQ~rkMvlekv~~vfmLHFVe---------------GLP~n-dl~~y-sF~feg~~Y~Vt~VIQY~~~~~HFvtWi~~ 240 (275)
T PF15499_consen 178 SKSQRRKMVLEKVPPVFMLHFVE---------------GLPHN-DLQHY-SFHFEGCLYQVTSVIQYQANLNHFVTWIRD 240 (275)
T ss_pred ChHHhHhhhhhcCchhhhhhhhc---------------cCCcc-CCCcc-ceeecCeeEEEEEEEEEeccCceeEEEEEc
Confidence 88655 67789999999999821 12222 23221 1112357999999999877 799999997
Q ss_pred CCCCcEEEEcCCceE
Q 000342 1592 HDQERWIMYDDKTVK 1606 (1634)
Q Consensus 1592 ~~~~kW~~FDDs~Vt 1606 (1634)
. +|.|..|||-.--
T Consensus 241 ~-dGsWLecDDLkgp 254 (275)
T PF15499_consen 241 S-DGSWLECDDLKGP 254 (275)
T ss_pred C-CCCeEeeccCCCc
Confidence 5 6889999998754
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.90 E-value=0.0082 Score=63.92 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=86.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
.+..++..|++.+|+.....++...|.+ +.+++..|.++..+.. ...|+.+|.+|..+.|+....-
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKE-----------YTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHhcCCCCcHHH
Confidence 4678899999999999999999999999 8999999999998753 2679999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
..+|.+|..+ +.|++|...+.+|+.+. |.+|
T Consensus 96 ~~lg~~l~~~----g~~~eAi~~~~~Al~~~-p~~~ 126 (144)
T PRK15359 96 YQTGVCLKMM----GEPGLAREAFQTAIKMS-YADA 126 (144)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999 68999999999999974 4443
No 45
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00032 Score=89.67 Aligned_cols=326 Identities=6% Similarity=-0.179 Sum_probs=205.8
Q ss_pred CCCccccccCcccccccccCCCCCCcccccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhchhhHHHHHhhcccccc
Q 000342 825 QFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSA 904 (1634)
Q Consensus 825 ~f~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~v~~~i~~~k~~~~~~~~~id~~i~~~~~~~~~l~~~l~~~s~ 904 (1634)
+|.+-..++|......+..+.+. .|.+++..|.. ....++..+...+.....++++--++..+.++++..+..+.++
T Consensus 23 ~~~~~k~~s~sir~~~m~~p~~~-l~~~~~Seh~~--~~~~v~t~qs~~~le~~~l~~i~~~~~~~~~~~~~g~~l~~~~ 99 (806)
T KOG1887|consen 23 SFCDRKILSCSIRDWLMGFPVKH-LGQLEVSEHSL--DSRLVETPQSICFLENPELYQVLDFLKKIKCQRNDGTGLVCRA 99 (806)
T ss_pred hhhhhhhccCcccchhhcCCHHH-hccceeccccc--chhhhcccchhhhhccHHHHHHHHHHHhhccccccCCcccccc
Confidence 45566668898888889999999 99999998877 5667899999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhccCCCCCCcCcccchhhhhhhhhhhcccCCC
Q 000342 905 YDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSK 984 (1634)
Q Consensus 905 ~dyr~~ilpl~k~~l~~~L~~~~~~da~~~~~a~~~a~~ael~l~~~k~~~~~~~~~~~~~~k~k~kkk~k~~rk~kd~k 984 (1634)
.||.-...+..++ +|..++..++..+..=..+++...-. .|..+..+++.+..+++...+.+.....+
T Consensus 100 ~~~~~~~~~~~~k-----------~d~d~~~~~~~~~~rl~~~~~~~~~~-~g~~n~~~p~~~~~~~~~~~d~iiswl~~ 167 (806)
T KOG1887|consen 100 VYSFFSRTRVKSK-----------IDFDAQFSVLLLDKRLLKSKGNRFDD-EGTINVFDPEAHYAKTKSQLDDIISWLED 167 (806)
T ss_pred ccceeeeeecccc-----------cCCchhhhhhhhcchhhhccCccccC-CCcccccCchHhhhhhhhhcchhhhhhhh
Confidence 9999888876644 67777777777776667778888877 89999999999999999888888887777
Q ss_pred CCCCCCcceecccccCccCCccCCCCCCCCCCc-----ccccCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 000342 985 PVGGNERHIVHDKTADLVSFPVESDGDNPDSET-----VVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENE 1059 (1634)
Q Consensus 985 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~e~~~~~~~~~~~ee~k~~~~~~~qr~~~~~ 1059 (1634)
..+.+... +.+.. .++.++-- +...+.-.-...++.+++-=..+++.++.-.+..+++|++|+
T Consensus 168 -~v~~d~~f--p~~~~---------~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~n~ 235 (806)
T KOG1887|consen 168 -YVLENKIF--PRPIR---------EHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRKNK 235 (806)
T ss_pred -hhhccccC--Cchhh---------hccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhhcc
Confidence 55444433 33321 11111000 000000111122233333333488999999999999999998
Q ss_pred HHHhhHHHhhccccccccCcccccc-ccCcCCCCCCCcccccccccCC-cccccccCCCCCCCC--CCCcccCCCCccCC
Q 000342 1060 AKLKHLAEQSKKSAQIFGENVAEGV-CDTYLGHGSNDLDMHKSMRLSS-PVQLVSKDEFPHNFE--GTPVNTANGAAVPI 1135 (1634)
Q Consensus 1060 ~~~kh~~e~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 1135 (1634)
.+.. .++.... ....+... ..-+ .++ ++..=. ...+.....-+..+. .-..+. ++.+++.
T Consensus 236 ~~dq-----~~~y~~~-~~~~~qe~~~~~~--------~~~-~~~~~~v~d~~~~~s~p~~~~~~~~~c~N~-~~~~~~~ 299 (806)
T KOG1887|consen 236 PEDQ-----WLEYEQL-LLDSCQEQQIEQS--------LQT-KLFLCAVRDVLEGASSPTFAFADASDCLNL-IREHKQE 299 (806)
T ss_pred hHHH-----HHHHHHh-chHHHHHHHHHhh--------hhh-hhHHHHHHhhhccccCCCCCccchHhhcch-hhhcccc
Confidence 8743 2222111 11111100 0000 000 000000 001111111111111 111122 2333333
Q ss_pred CCCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcCCCCcccccCCCcCcccccccc
Q 000342 1136 RSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTDRRTGRRGRRHRSSNRSQDWKNQAL 1196 (1634)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~s~~~~~~~~~~~ 1196 (1634)
..-.+...-.. .++.+.+..+.+...+-++.-+....++..+|.+.+.+...+.+..-
T Consensus 300 ~~~~~~~~i~~---l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~ 357 (806)
T KOG1887|consen 300 KDDAVLPSIDL---LKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKK 357 (806)
T ss_pred ccceecCCcch---hhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcc
Confidence 33322222222 66777888888888888888888888999999998877777666443
No 46
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.65 E-value=0.0096 Score=72.81 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
..|..++..|++.+|++...+.+...|+. +.++...|.+++.+.. +..|+..+.+|..+.|+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~-----------~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGN-----------FTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCCHHH
Confidence 34678889999999999999999999999 8888888888887642 368999999999999999999
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 142 a~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
...+|.+++.+ +.|++|...+.+|+.+. |.+|
T Consensus 73 ~~~lg~~~~~l----g~~~eA~~~~~~al~l~-P~~~ 104 (356)
T PLN03088 73 YLRKGTACMKL----EEYQTAKAALEKGASLA-PGDS 104 (356)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHhC-CCCH
Confidence 99999999999 68999999999999973 4443
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.02 E-value=0.088 Score=54.34 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
-...+..++..|++.+|+...+.++..+|.. +.++...|.+++.+.. ...|+.++.++..+.|+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKE-----------YEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCCCCh
Confidence 4566788889999999999999999999998 7888888888887642 1578889999999999999
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 140 ~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
.....+|..+... +.|++|+....+++.+.
T Consensus 86 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 86 RPYFHAAECLLAL----GEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhc
Confidence 9999999999988 68999999999999973
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.90 E-value=0.094 Score=61.66 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000342 58 KLECERALTA-LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1634)
Q Consensus 58 r~e~~~al~~-~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1634)
...=+.|+.+ +..|++++|+...+.++..||+|.+++.+|+..|.+++... +. ..|+..|...+..+|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g----~~-------~~A~~~f~~vv~~yP 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG----KK-------DDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHCC
Confidence 4456677776 56799999999999999999999888999999999999764 22 589999999999999
Q ss_pred ChHHHHHH---HHHHHHHHhccCccHHHHHHHHHHHhc
Q 000342 137 HSVEFAHF---YANLLYEAANDGKEYEEVVQECERALA 171 (1634)
Q Consensus 137 ~sl~ia~~---~A~~L~~l~~~~~~Y~~a~~e~~RAL~ 171 (1634)
++-...-. .|..+..+ +.|++|..-..+.+.
T Consensus 212 ~s~~~~dAl~klg~~~~~~----g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDK----GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCcchhHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence 98644333 35555555 578888877766655
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.40 E-value=0.085 Score=62.87 Aligned_cols=100 Identities=18% Similarity=0.079 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
...+.-..+.|++.+|+...++.+..+|+. +.+++..|.++..... - ..|+++|.+|.++.|+...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~----~-------~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGN----F-------DAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCC----H-------HHHHHHHHHHHHhCCCCHH
Confidence 345566788899999999999999999999 8999999999887752 2 5899999999999999999
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC
Q 000342 141 FAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1634)
Q Consensus 141 ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa 179 (1634)
....+|.+++.. +.|++|...+.+++.+ +|.||.
T Consensus 134 a~~~lg~~l~~~----g~~~eA~~~~~~al~~-~P~~~~ 167 (296)
T PRK11189 134 AYLNRGIALYYG----GRYELAQDDLLAFYQD-DPNDPY 167 (296)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 989999999888 6899999999999987 577773
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.12 E-value=0.23 Score=49.41 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh--
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS-- 138 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s-- 138 (1634)
-..+..+.+.|++.+|++..+.++..+|++...+-+++..|.++++... ...|+.+|.++..+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-----------YADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-----------HHHHHHHHHHHHHHCCCCCc
Confidence 4567788899999999999999999999875445677778888876642 257999999999999996
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 139 -l~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..+...+|.++..+ +.|++|.....+++..
T Consensus 75 ~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQEL----GDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHh----CChHHHHHHHHHHHHH
Confidence 45566677777776 6789999888888886
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.79 E-value=0.23 Score=55.89 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
.-+...|++++|+...+....-.|+. +-++...|.+.+...... ....|...+.+|..+.|+.+..-..
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHH
Confidence 34668899999999999999888988 777777777654332111 1257999999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcccCCCC
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAIENPID 177 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~D 177 (1634)
+|..+++. +.|++|+.-..++|....|.|
T Consensus 150 LA~~~~~~----g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 150 LASDAFMQ----ADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCc
Confidence 99999998 689999999999999876644
No 52
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.74 E-value=0.14 Score=63.31 Aligned_cols=101 Identities=27% Similarity=0.345 Sum_probs=87.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
.|+..++.|..++|+.....|+..||++ +....+.|.|..++-+. ..|.+.+.+|..|.|++...=
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~-----------~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKA-----------KEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHhcCCCccHHH
Confidence 4788999999999999999999999999 88899999999877432 579999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~ 182 (1634)
.-+|.+|+.. +.+++|+++..|++.- .|.||-.-+
T Consensus 378 ~~~a~all~~----g~~~eai~~L~~~~~~-~p~dp~~w~ 412 (484)
T COG4783 378 LNLAQALLKG----GKPQEAIRILNRYLFN-DPEDPNGWD 412 (484)
T ss_pred HHHHHHHHhc----CChHHHHHHHHHHhhc-CCCCchHHH
Confidence 9999999999 5788999999998873 566665544
No 53
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.044 Score=70.65 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=60.6
Q ss_pred ccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCC--------ccCCc---HHHHHHHHHHHHHhhccCCCCCcccC
Q 000342 1303 LKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHI--------HVGEP---CVVCALYEIFTALSIASTDTRKEAVA 1371 (1634)
Q Consensus 1303 L~NlG~~NTCYLNSVLQ~L~hlp~FR~~Ll~~~~~~~~--------~~~~~---cv~~aL~~LF~~L~~~s~g~~~~~vs 1371 (1634)
|.|.| |+||.|++||+|..+|+|+..+......... ..... +-.+.+..........+. ..+.+.
T Consensus 34 l~n~g--n~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 109 (587)
T KOG1864|consen 34 LVNTG--NSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSS--SNESFN 109 (587)
T ss_pred EeecC--CchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCC--cccccc
Confidence 99999 8999999999999999999877764321110 01111 111111111111111100 111222
Q ss_pred c--HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCC
Q 000342 1372 P--TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPG 1415 (1634)
Q Consensus 1372 P--~~L~~aL~~i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~ 1415 (1634)
+ ..+...+........-|....|.||++|+.-++-.+...+...
T Consensus 110 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~ 155 (587)
T KOG1864|consen 110 LSVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGVS 155 (587)
T ss_pred chHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcccC
Confidence 2 2333333322222233777899999999999988888766443
No 54
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.44 E-value=0.026 Score=40.85 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=20.6
Q ss_pred EecccchhccCChhHHHHhhhhhh
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
|.|+.|++.|.+...++.|+...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 899999999999999999998776
No 55
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.38 E-value=0.52 Score=42.80 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
.+..+...|++.+|+...++.....|.. +.++...|.+++... -...|++++.++..+.|......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLG-----------KYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhCCCcchhHH
Confidence 4556677899999999999999888888 677888888887663 12578899999999999999888
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
...|.+++.. +.|++|..-+.+++.+
T Consensus 72 ~~~~~~~~~~----~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKL----GKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHcc
Confidence 8888888888 4689998888888765
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=94.37 E-value=0.17 Score=65.63 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=67.3
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000342 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1634)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1634)
..|++.+|+..+++.....|++ +.+|...|.++.... + ...|+.+|.+|..+.|++...-..+|.+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g----~-------~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHS----E-------YIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc----C-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456778888888877777887 777777777766542 1 1467777888888888887777777777
Q ss_pred HHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 149 LYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 149 L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
++.. +.|++|...+.+|+.+ +|.+|...
T Consensus 382 l~~~----G~~~eAi~~~~~Al~l-~P~~~~~~ 409 (553)
T PRK12370 382 LFMA----GQLEEALQTINECLKL-DPTRAAAG 409 (553)
T ss_pred HHHC----CCHHHHHHHHHHHHhc-CCCChhhH
Confidence 7776 4678888888888777 46666543
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.29 E-value=0.19 Score=66.54 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000342 56 AIKLECERALTALRRGN-HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 56 ~ir~e~~~al~~~~~G~-h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
.+-..+++++..+.+-+ ..+||.++.+++.++|.. +-++++-|.+..++.+ +..|+..+..+..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~-----------~~ea~~~l~~~~~~ 115 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHT---ELFQVLVARALEAAHR-----------SDEGLAVWRGIHQR 115 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhh
Confidence 44455666666655544 678899999999999999 8999999999887753 24677777888888
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 135 ~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
+|+.+...+-+|+.|+.. +.|++|+.+|.|+|.+. |..+..+
T Consensus 116 ~Pd~~~a~~~~a~~L~~~----~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQ----QGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred CCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 888888888888888888 57888888888888763 4444433
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.21 E-value=0.1 Score=47.32 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=54.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
.|..++..|++++|++..+.+...+|++ +.+++..|.+++.+.. ...|+..|.++..+.|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGR-----------YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCC
Confidence 5678899999999999999999999999 9999999999997752 257889999999999985
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.86 E-value=0.39 Score=54.77 Aligned_cols=106 Identities=27% Similarity=0.299 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
..-+.-++..++.|+...|.+-+++....-|++ .++|.+.++++..+.. ...|-+.|++|..|.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~Ge-----------~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLGE-----------NDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHhcCCC
Confidence 344567799999999999999999999777999 9999999999987752 25788999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc---CCCCCCcc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE---NPIDPAKE 181 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~---~P~DPa~~ 181 (1634)
.=++--=+.--|..- +.|++|.+...+|+.-+ .|.|+.++
T Consensus 102 ~GdVLNNYG~FLC~q----g~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 102 NGDVLNNYGAFLCAQ----GRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred ccchhhhhhHHHHhC----CChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 988777676656555 58999999999999863 45666666
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=93.80 E-value=0.19 Score=65.07 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=80.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000342 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1634)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1634)
-+...|++++|++..++.....|++ +.+|+..|.++..+.. ...|+..+.+|.++.|+........
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~-----------~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQ-----------LEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467899999999999999999999 8888888988886642 2579999999999999988776666
Q ss_pred HHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 146 A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
+.+++.+ +.|++|+..+.+++....|.+|..+
T Consensus 413 ~~~~~~~----g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 413 LWITYYH----TGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred HHHHHhc----cCHHHHHHHHHHHHHhccccCHHHH
Confidence 6666666 4689999999999988777777754
No 61
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=93.66 E-value=0.044 Score=39.88 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=21.3
Q ss_pred EecccchhccCChhHHHHhhhhhh
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
|.|+.|++.|.+...|..|+.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 6899999999999999999976 5
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.51 E-value=0.54 Score=62.43 Aligned_cols=124 Identities=9% Similarity=-0.038 Sum_probs=93.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1634)
..+.|++++|+...+.++.--|.. .-+++.-+++..++ .++..|+..+.++....|++.+.-..+|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~~L~~~-----------~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLRGVKRQ-----------QGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 456789999999999988888887 55555555555543 3668999999999999999999999999
Q ss_pred HHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccccchhhhhhhhchHHHHHHHHHHHHHHHHhhc
Q 000342 147 NLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAHVQSELRSLIQKSN 213 (1634)
Q Consensus 147 ~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~~~~eL~~li~~a~ 213 (1634)
.+|..+ +.|++|..-..|++. .+|.+|... +.++..... ..+.+.+..-++.+++-..
T Consensus 162 ~~l~~~----g~~~~A~~~y~~~~~-~~p~~~~~~-~~~a~~l~~---~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEI----GQSEQADACFERLSR-QHPEFENGY-VGWAQSLTR---RGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHh----cchHHHHHHHHHHHh-cCCCcHHHH-HHHHHHHHH---cCCHHHHHHHHHHHHHhhC
Confidence 999999 589999999999999 777555544 555555432 2334556666666655543
No 63
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.86 E-value=0.37 Score=44.48 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000342 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1634)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1634)
.+++.++..+|++.++.++.-+|.+ +.++...|.+++.+.. ...|+..+.++..+.|+......+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~-----------~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGR-----------YEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhcc-----------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678899999999999999999999 9999999999998753 2689999999999999999888877
Q ss_pred HHH
Q 000342 146 ANL 148 (1634)
Q Consensus 146 A~~ 148 (1634)
|++
T Consensus 70 a~l 72 (73)
T PF13371_consen 70 AML 72 (73)
T ss_pred Hhc
Confidence 764
No 64
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.84 E-value=0.71 Score=60.77 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh----hHHHHHhhchhhHHH-----hhccC-----------ChhH
Q 000342 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAY----VALIHRVQGTVCVKV-----ASIID-----------DLNS 116 (1634)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~----~a~~h~lqG~i~~~~-----a~~~~-----------~~~~ 116 (1634)
++.=-..|.-++.+|+.++|.++.+|.+..-|.-.. -+.++..+|.+--.+ |+-+. +-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 444455677889999999999999999977776521 245555555543322 22111 1222
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 117 k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
++-+...|.-||++|..+-|...++-.-++.++-.+ |.+..|+.=..+.+..
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~----G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT----GDLKRAMETFLQLLQL 270 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh----ChHHHHHHHHHHHHhh
Confidence 344788999999999999999999999999999999 4678887555555543
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.74 E-value=1.2 Score=58.60 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH--------
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-------- 119 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-------- 119 (1634)
-...+.-+...|++.+|+...++.....|+. +.+++..|.+++.... .+++......
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 3566677788899999999888888888888 7778888888776531 2222111111
Q ss_pred ---HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 120 ---HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 120 ---~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
-+..|+..|.++..++|+..+.-..+|.++... +.|++|...+.+|+.+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ----NKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcC
Confidence 135677777888888888877777777777776 46788888888888774
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.53 E-value=0.81 Score=50.08 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
..-..-+..++..|++.+|+...+++...+|++ +.++...|.+++... +. ..|+..|.++..+.|+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~----~~-------~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLG----EL-------EKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHhhCCC
Confidence 344455778889999999999999999999998 788888888887653 22 4789999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.......+|..++.. +.|++|..-+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~----g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQ----GKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhc
Confidence 988888888888877 5899999999999875
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.42 E-value=0.53 Score=62.42 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=79.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
..+.+.|++.+|+....+....+|++ +.+++..|.+++....- +++ + ..|+..|.+|..+.|+....-..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~-~eA--~----~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRS-REA--K----LQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCc-hhh--H----HHHHHHHHHHHhhCCCCHHHHHH
Confidence 34567788888888888888888888 77777778877765421 111 0 35899999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCc
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~ 180 (1634)
+|.+|+.. +.|++|...+.+|+.+ .|.+|..
T Consensus 290 lg~~l~~~----g~~~eA~~~l~~al~l-~P~~~~a 320 (656)
T PRK15174 290 YADALIRT----GQNEKAIPLLQQSLAT-HPDLPYV 320 (656)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHHH
Confidence 99999998 5899999999999986 4655543
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.41 E-value=0.39 Score=63.64 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1634)
++.+++.|++.+|+..+....+.+|.. +-+++..|...... .+. ..|+..|.++..+.|+..+.-.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~---~~~l~~l~~~~l~~----g~~-------~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNG---RDLLRRWVISPLAS----SQP-------DAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCc---hhHHHHHhhhHhhc----CCH-------HHHHHHHHHHHHhCCCChHHHH
Confidence 477889999999999999999999999 78888888555422 222 4788999999999999988888
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 144 ~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
.+|.++... +.|++|...+.+|+.+ +|.+|..+
T Consensus 115 ~la~~l~~~----g~~~~Ai~~l~~Al~l-~P~~~~a~ 147 (656)
T PRK15174 115 LVASVLLKS----KQYATVADLAEQAWLA-FSGNSQIF 147 (656)
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHh-CCCcHHHH
Confidence 888888887 5789999999999987 46655544
No 69
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.91 E-value=1.6 Score=46.22 Aligned_cols=92 Identities=25% Similarity=0.344 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH--
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV-- 139 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl-- 139 (1634)
+.++.....|+..++-+.+++|+..||++.++.++....|.+++... + +..|...|..+..-.|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g----~-------~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG----D-------YDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC----C-------HHHHHHHHHHHHhhCCCHHHH
Confidence 34466667899999999999999999999888888888888888653 2 2467888888888776542
Q ss_pred HHHHH-HHHHHHHHhccCccHHHHHHHHHH
Q 000342 140 EFAHF-YANLLYEAANDGKEYEEVVQECER 168 (1634)
Q Consensus 140 ~ia~~-~A~~L~~l~~~~~~Y~~a~~e~~R 168 (1634)
.+|.+ +|.+++.. +.|++|......
T Consensus 85 ~~a~l~LA~~~~~~----~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQ----GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHh
Confidence 34443 78888877 689999888743
No 70
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.51 E-value=0.95 Score=59.48 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH-----------H
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-----------H 120 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-----------~ 120 (1634)
+.-.+..|++.+|+...++.+..+|+. +..+...|.++..+.. ..++.+.... -
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345567899999999999999999988 6677777777765421 1111111111 1
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+..|+.+|.+|..+.|+.+..-..+|.+++.+ +.|++|...+.+|+.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE----GSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 23466666666666666666666666666665 4566666666666654
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.40 E-value=0.64 Score=42.42 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=56.1
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
|.+++..|.+++.... ...|+.+|++|..+.|+....-..+|.+++.++ +.|++|...+.+||.+
T Consensus 3 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-----------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTH-----------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHc
Confidence 6778888888887642 268999999999999999999999999999993 1699999999999986
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.26 E-value=1.5 Score=49.87 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=67.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1634)
+.-++..|++.+|+...+++...+|++..++.+++..|.++++... +..........|+..|.++....|++...-.
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 3455666777777777777777777765445566777777765421 1111123456799999999999999864321
Q ss_pred -----------------HHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 144 -----------------FYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 144 -----------------~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..|..++.. +.|++|...+.+++..
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKR----GAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHH
Confidence 234444444 5799999999998876
No 73
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=90.80 E-value=0.94 Score=54.58 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHhhHH-HHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhhhCCCCcc
Q 000342 1310 YNCFLNVIIQSLWHLRR-FREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNF 1388 (1634)
Q Consensus 1310 NTCYLNSVLQ~L~hlp~-FR~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~~s~g~~~~~vsP~~L~~aL~~i~p~~~~ 1388 (1634)
|+||+||++=.|=++.. |+ .-.|++++..+... .|..|..-+-.. . .
T Consensus 110 NNCwVna~~~~LQ~~~~~f~-------------------~~~l~~aw~~f~~G---------~~~~fVa~~Ya~-~---~ 157 (320)
T PF08715_consen 110 NNCWVNAACLQLQALKIKFK-------------------SPGLDEAWNEFKAG---------DPAPFVAWCYAS-T---N 157 (320)
T ss_dssp TTHHHHHHHHHHTTST--BS-------------------SHHHHHHHHHHHTT-----------HHHHHHHHHH-T---T
T ss_pred CCcHHHHHHHHHHhcCCccC-------------------CHHHHHHHHHHhCC---------ChHHHHHHHHHH-c---C
Confidence 89999998866544431 11 12455666666532 233333322221 1 1
Q ss_pred chhhccccHHHHHHHHHHHHHh
Q 000342 1389 FQEAQMNDASEVLAVIFDCLHR 1410 (1634)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lhe 1410 (1634)
+..|+..||+++|..||+.++.
T Consensus 158 ~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 158 AKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCcCHHHHHHHHHHhccc
Confidence 5678999999999999987665
No 74
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.76 E-value=2 Score=59.45 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
..|+.+|.+|..+.|+..++-..+|.++..+ +.|++|+..+++|+.+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l----Gd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRL----DDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcC
Confidence 4678888889999999988888888888888 57889988899998764
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=90.66 E-value=1.2 Score=50.10 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=75.5
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1634)
.++..+++..++.....+|++ +-.+..-|.++.... +. ..|+.+|.+|..+.|+..++...+|.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g----~~-------~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN----DY-------DNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888899988899999 788888898888654 22 5899999999999999999999999988
Q ss_pred HHHhccCccHHHHHHHHHHHhcccCCCCCCc
Q 000342 150 YEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1634)
Q Consensus 150 ~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~ 180 (1634)
+....+ ..|++|..-..+||.+. |.+|..
T Consensus 118 ~~~~g~-~~~~~A~~~l~~al~~d-P~~~~a 146 (198)
T PRK10370 118 YYQAGQ-HMTPQTREMIDKALALD-ANEVTA 146 (198)
T ss_pred HHhcCC-CCcHHHHHHHHHHHHhC-CCChhH
Confidence 655321 13799999999999973 545433
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.59 E-value=1.1 Score=42.81 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1634)
.|++..|+...+++....|.+. -..+.+.-|.+++.... ...|+..+.+ ....|..+.+...+|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~-----------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGK-----------YEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTH-----------HHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCC-----------HHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998531 13334446778877642 2678888888 888899999999999999
Q ss_pred HHHhccCccHHHHHHHHHHH
Q 000342 150 YEAANDGKEYEEVVQECERA 169 (1634)
Q Consensus 150 ~~l~~~~~~Y~~a~~e~~RA 169 (1634)
+.+ +.|++|..-..+|
T Consensus 69 ~~l----~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKL----GKYEEAIKALEKA 84 (84)
T ss_dssp HHT----T-HHHHHHHHHHH
T ss_pred HHh----CCHHHHHHHHhcC
Confidence 999 6899998776654
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.55 E-value=1.5 Score=50.94 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=79.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
..+..+++||+..|+..+.+++.--|.. |.++.+-|-++.++.+. ..|...|.+|..|+||.-.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~-----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRF-----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccCh-----------hHHHHHHHHHHHhccCCchhh
Confidence 5678899999999999999999888999 99999999888877642 467888999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
-=+|++++.- ++++.|++...+|..-
T Consensus 172 nNlgms~~L~----gd~~~A~~lll~a~l~ 197 (257)
T COG5010 172 NNLGMSLLLR----GDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 9999999888 5889999988888763
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=89.00 E-value=2.8 Score=45.77 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
--..+..+...|++.+|+...++.+..+|.....+.+++..|.+++.+.. ...|+.+|.+|..+.|+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-----------HDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcccH
Confidence 34556778889999999999999987776542225677777888876642 2578889999999999998
Q ss_pred HHHHHHHHHHHHHhcc---CccHHHHHHHHHHHh
Q 000342 140 EFAHFYANLLYEAAND---GKEYEEVVQECERAL 170 (1634)
Q Consensus 140 ~ia~~~A~~L~~l~~~---~~~Y~~a~~e~~RAL 170 (1634)
.....++.+++..++. .+.+++|+....+|+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 8888888888887542 124555544444443
No 79
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.93 E-value=1.6 Score=54.36 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=65.0
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000342 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1634)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1634)
..++..+|++.+.+....+|.+ +.++.+|+..+.+... | .-|+.++.+|+.++|+..+.=..+|..
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~----------~-~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKK----------Y-ELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCC----------H-HHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566778888888888777887 7777788777775532 1 689999999999999999999999999
Q ss_pred HHHHhccCccHHHHHHHH
Q 000342 149 LYEAANDGKEYEEVVQEC 166 (1634)
Q Consensus 149 L~~l~~~~~~Y~~a~~e~ 166 (1634)
++.+ ++|+.|..-.
T Consensus 278 Yi~~----~d~e~ALlaL 291 (395)
T PF09295_consen 278 YIQL----GDFENALLAL 291 (395)
T ss_pred HHhc----CCHHHHHHHH
Confidence 9999 6899998544
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.81 E-value=0.98 Score=40.83 Aligned_cols=53 Identities=28% Similarity=0.490 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
...|+.+|.++....|++.+.-..+|.+++.. +.|++|..-..+++.+. |.+|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~~-P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALELD-PDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHC-cCCC
Confidence 36899999999999999999999999999998 68999998898888763 5554
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.43 E-value=5.7 Score=44.82 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
.-.-|...++.|++.+|+...++++..||+|..++-+++..|..++.+....-..+-.......|+..|..-+..+|||-
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 34456678899999999999999999999998889999999999998865430112335678899999999999999997
Q ss_pred HH
Q 000342 140 EF 141 (1634)
Q Consensus 140 ~i 141 (1634)
-.
T Consensus 125 y~ 126 (203)
T PF13525_consen 125 YA 126 (203)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 82
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.78 E-value=6.7 Score=44.26 Aligned_cols=68 Identities=28% Similarity=0.426 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
..|+..+..|++.+|++..+++..+||+|..++.+....|..++... + ...|+..|.+-..+.|++-.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~----~-------y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG----D-------YEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHCCCCcc
Confidence 56789999999999999999999999999999999998899888663 2 35889999999999999874
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.58 E-value=2.6 Score=57.04 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
..|.-+...|+..+|++.++++....|+. +.++...|.+..... ++ ..|+..+.+|..+.|+...+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g----~~-------~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARG----WP-------RAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHhhCCCChHH
Confidence 44556778899999999999999999999 777777777666543 22 68999999999999999997
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 142 a~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
=...|..+..+ +.|++|+....+++.. .|.+|...
T Consensus 430 ~~~~a~~al~~----~~~~~A~~~~~~ll~~-~Pd~~~~~ 464 (765)
T PRK10049 430 EVEQAWTALDL----QEWRQMDVLTDDVVAR-EPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 77777776666 5799999999999985 46666444
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.54 E-value=1.7 Score=39.61 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1634)
...+..++..|++.+|+...++.+..+|+. +.++...|.+++.+.. + ...|+.++.+|..|.|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~---~-------~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGK---D-------YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTT---H-------HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCc---c-------HHHHHHHHHHHHHcCc
Confidence 456788899999999999999999999999 8999999999998751 1 1589999999999987
No 85
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.50 E-value=0.99 Score=53.31 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 114 ~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..+|..-...||+.|.+|..|.|+.-++..=+|-++..| +.|+.|+..|+.||.|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhc
Confidence 344555558999999999999999999999999999999 6899999999999998
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=87.39 E-value=9.3 Score=46.05 Aligned_cols=111 Identities=22% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHH---HHHhhchhhHH---Hhhc-----cCChh---HHH----H-
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVAL---IHRVQGTVCVK---VASI-----IDDLN---SKQ----R- 119 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~---~h~lqG~i~~~---~a~~-----~~~~~---~k~----~- 119 (1634)
....+++.++..|++.+|++..+++...+|.+..+.. .+...|...-+ +... -.++. ... .
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 3445778889999999999999999999999832211 22222221100 0000 11111 111 0
Q ss_pred ----HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 120 ----HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 120 ----~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
.+..|+..+.++..+.|+.....+.+|.++++. +.|++|..-+.+++...
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~----g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ----GRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHhhhhcc
Confidence 146799999999999999999999999999998 58899999999998864
No 87
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.79 E-value=2.4 Score=45.48 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----ccCChhHHHHHHHHHHHHHHHHhhh
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----IIDDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
.+-.-+-..+.+|++++|++-+++++.-||.+..|.-|.+..|..++++.. .+-..+.-..+.+.|+..|.+-++-
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 334444567788889999999999998999888888888888988888753 0002222255778899999999999
Q ss_pred CCChHH
Q 000342 135 SPHSVE 140 (1634)
Q Consensus 135 ~P~sl~ 140 (1634)
+|||--
T Consensus 129 yP~S~y 134 (142)
T PF13512_consen 129 YPNSEY 134 (142)
T ss_pred CcCChh
Confidence 999853
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=86.74 E-value=1.7 Score=39.48 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1634)
++..|++.+|++..+++...+|++ +-+...-|.++++... +..|...+.++....|+.-.+..++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~-----------~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQ-----------YDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 467899999999999999999999 7777777888876642 25789999999999999877777776
Q ss_pred H
Q 000342 147 N 147 (1634)
Q Consensus 147 ~ 147 (1634)
.
T Consensus 67 ~ 67 (68)
T PF14559_consen 67 Q 67 (68)
T ss_dssp H
T ss_pred c
Confidence 5
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.60 E-value=4 Score=46.38 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
..--..+..++..|+..+|+...++++..+|.+.....++...|.++++.. + ...|+..|.++.+++|+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----~-------~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----D-------YAEAIAAADRFIRLHPN 102 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHHCcC
Confidence 344566678889999999999999999999998554567888898888764 2 25899999999999999
Q ss_pred hHHH---HHHHHHHHHHHhc----cCccHHHHHHHHHHHhcccCCCCC
Q 000342 138 SVEF---AHFYANLLYEAAN----DGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 138 sl~i---a~~~A~~L~~l~~----~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
.... -..++..++.... ..+.|++|.....+++.. .|..+
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~ 149 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSE 149 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCCh
Confidence 8874 3344566655411 114688898888888865 34443
No 90
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.22 E-value=3 Score=57.75 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa 179 (1634)
..|+.+|.+|..+.|+....-.-+|.+|... +.|++|..-+.+|+.+ .|.+|.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~----G~~eeAi~~l~~AL~l-~P~~~~ 678 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDS----GDIAQSREMLERAHKG-LPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 3577778888888888887777777777776 4678888778888776 355543
No 91
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.76 E-value=5 Score=43.82 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----------ccC----ChhHHH--------
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----------IID----DLNSKQ-------- 118 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----------~~~----~~~~k~-------- 118 (1634)
...+.-....|++++|++..++....+|.. +.++...|.+++.... .++ +.....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345667788899999999999998888877 4455555555443320 000 000000
Q ss_pred ---HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 119 ---RHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 119 ---~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.-+..|...+.++..+.|+.......+|.+++.. +.|++|..-..+++.+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR----GQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 0134588888888888888888777888888777 5788888888888877
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.45 E-value=2.2 Score=45.66 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
.+|..+++.|++.+|.+..++|-.+||.+.++..+..-.|+.+|+.. +- ..|+..+.+-++|.|++-.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~----~y-------~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG----DY-------EEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc----CH-------HHHHHHHHHHHHhCCCCCCc
Confidence 34556678899999999999999999999888888888899998764 22 47999999999999999863
Q ss_pred HHHHHHHHHHH
Q 000342 142 AHFYANLLYEA 152 (1634)
Q Consensus 142 a~~~A~~L~~l 152 (1634)
-+|.-+..|
T Consensus 84 --dYa~Y~~gL 92 (142)
T PF13512_consen 84 --DYAYYMRGL 92 (142)
T ss_pred --cHHHHHHHH
Confidence 344444444
No 93
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.30 E-value=3.5 Score=55.04 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=57.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1634)
+...|++.+|++.+++.....|.+ +.++.+.|.+++... ....|+.+|.++..+.|+.......+|
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 169 ALAENRFDEARALIDEVLTADPGN---VDALLLKGDLLLSLG-----------NIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344455555555555554444444 444444444444321 124678888888888898888888888
Q ss_pred HHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 147 NLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 147 ~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.+++.. +.|++|...+.+++.+
T Consensus 235 ~~~~~~----g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 235 TILIEA----GEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHc----CCHHHHHHHHHHHHHh
Confidence 888877 5788888888888775
No 94
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=85.07 E-value=4.5 Score=50.40 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=48.3
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000342 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1634)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1634)
..|+..+|+++++++..+||++ +.++...|.+++..-. ...|.+.|.++..+.|+... .+.+|.+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~---~~l~l~lgrl~~~~~~-----------~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDT---PLLWSTLGQLLMKHGE-----------WQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 3456666666666666666666 6666666666664421 13456666666666666543 2345555
Q ss_pred HHHHhccCccHHHHHHHHHHHhcc
Q 000342 149 LYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 149 L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+-.++ .-++|..-.++||..
T Consensus 371 ~~~~g----~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRLH----KPEEAAAMRRDGLML 390 (398)
T ss_pred HHHcC----CHHHHHHHHHHHHhh
Confidence 55553 345555555555554
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=84.85 E-value=6.2 Score=42.81 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
...+...+..|++++|+...+.....+|++...+.++.-.|.++.... + ...|+.+|.+|..+.|+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g----~-------~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG----E-------HTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCcCcHH
Confidence 455678888999999999999887666654222456666677776553 1 24788899999999999988
Q ss_pred HHHHHHHHHHHHhc---cCccHHHHHHHHHHHhcc
Q 000342 141 FAHFYANLLYEAAN---DGKEYEEVVQECERALAI 172 (1634)
Q Consensus 141 ia~~~A~~L~~l~~---~~~~Y~~a~~e~~RAL~I 172 (1634)
.-..+|.++..+|+ ..+.|++|..-+.+|+.+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 87788888886652 124677666666666554
No 96
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.94 E-value=3.7 Score=47.90 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
-=+.|...+..|++.+|++..+++...||+|..+..+....|..+++... ...|+..|.+...+.|++-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-----------y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-----------LPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCcCCC
Confidence 33678889999999999999999999999997777777788888887642 3689999999999999997
Q ss_pred HH
Q 000342 140 EF 141 (1634)
Q Consensus 140 ~i 141 (1634)
.+
T Consensus 104 ~~ 105 (243)
T PRK10866 104 NI 105 (243)
T ss_pred ch
Confidence 65
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.73 E-value=10 Score=39.65 Aligned_cols=95 Identities=19% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC---h
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH---S 138 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~---s 138 (1634)
+.|-..+.-|++.+|+..-....+.-.....-..+..-.|..+..+. .. ..|+..++++..-+|+ +
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG----~~-------deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG----RY-------DEALALLEEALEEFPDDELN 74 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHCCCcccc
Confidence 45666778899999998888876532222111222222333333332 33 4788889999999999 8
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHhc
Q 000342 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1634)
Q Consensus 139 l~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~ 171 (1634)
-.+.+|+|..|+.+ +.+++|+..+-++|+
T Consensus 75 ~~l~~f~Al~L~~~----gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNL----GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Confidence 89999999999999 578999999988876
No 98
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.87 E-value=7.6 Score=48.55 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
+.-.+++..+..|+...|.+.+.+.....|+. .+...+.|.+.... .+. ..|...+.+|.+..|++
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~----g~~-------~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQR----GDE-------ARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHhCCcC
Confidence 34566788899999999999998877555655 55555556665544 233 36777778888889998
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 139 -l~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
+.+-..+|++++.. +.|+.|.....+.+... |.+|...
T Consensus 152 ~l~~~~~~a~l~l~~----~~~~~Al~~l~~l~~~~-P~~~~~l 190 (409)
T TIGR00540 152 NILVEIARTRILLAQ----NELHAARHGVDKLLEMA-PRHKEVL 190 (409)
T ss_pred chHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 45666678888887 68999999998888874 8887544
No 99
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=82.62 E-value=5.4 Score=54.08 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
..+...|++.+|++..+++.+..|.+ +-++...|.++.+.. +. ..|+..+.+++.+.|+... ...
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g----~~-------~eA~~~l~~~l~~~P~~~~-~~~ 121 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADAG----QY-------DEALVKAKQLVSGAPDKAN-LLA 121 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHH-HHH
Confidence 34556666667766666666666666 444444444443322 11 3566777777777777777 556
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+|.++... +.+++|+....+|+.+
T Consensus 122 la~~l~~~----g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 122 LAYVYKRA----GRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 66666655 4567777777777765
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=82.59 E-value=8.2 Score=47.10 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhh--HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYV--ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~--a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
-+.-+...|++.+|++..+.+...+|..... +..+...|.++++.. + +..|+..|.++..+.|+..+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~-------~~~A~~~~~~al~~~p~~~~ 215 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG----D-------LDAARALLKKALAADPQCVR 215 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC----C-------HHHHHHHHHHHHhHCcCCHH
Confidence 3444555666666666666666555543111 112223344333321 1 12444555555555555555
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 141 FAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 141 ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
....+|.++... +.|++|..-..+++.+
T Consensus 216 ~~~~la~~~~~~----g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 216 ASILLGDLALAQ----GDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 444444444444 3455555555555543
No 101
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=82.48 E-value=7.3 Score=55.30 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=23.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1634)
.|-.+...|+.++|++.++ .||.+ +.++...|.++.+.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p~~---~~~~~~La~~~~~~ 616 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQPPS---TRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCCCC---chHHHHHHHHHHHc
Confidence 3445566777777775544 56776 55666666665543
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=81.97 E-value=5.4 Score=56.59 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=72.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1634)
++.+...|++.+|+...++....+|++ +-++...|.+++... + ...|+.+|.+|..+.|+......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g----~-------~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD---SEALGALGQAYSQQG----D-------RARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCccchhH
Confidence 566788999999999999999999999 888888898888664 2 25789999999999998754211
Q ss_pred --------------HHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 144 --------------FYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 144 --------------~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
..|..++. .+.|++|+..+.+|+.+. |.++
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALK----ANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC-CCCH
Confidence 11222333 368999999999999983 4443
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.92 E-value=3.2 Score=38.16 Aligned_cols=48 Identities=33% Similarity=0.500 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
..|+.++.++..+.|+++..-..+|.+++.+ +.|.+|...+.+++.+.
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQL----GRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHh----ccHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999999 68999999999999863
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.80 E-value=9.4 Score=46.58 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1634)
-+..+...|++++|++..+++....|.+ +.++...|.++...
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 227 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHC
Confidence 4455667888888888888888777777 56666666666654
No 105
>PRK11906 transcriptional regulator; Provisional
Probab=81.46 E-value=5.2 Score=50.26 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHH
Q 000342 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1634)
Q Consensus 72 ~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~ 151 (1634)
+..+|++.|..-.+--|++ |.+|..-|++..-.+. +..|...|.+|..|.||+.....++|.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~~~-----------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 319 AAQKALELLDYVSDITTVD---GKILAIMGLITGLSGQ-----------AKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhcc-----------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4667777777777666888 8999998887765431 3688999999999999999999999999999
Q ss_pred HhccCccHHHHHHHHHHHhcc
Q 000342 152 AANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 152 l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
. |..++|.....+||..
T Consensus 385 ~----G~~~~a~~~i~~alrL 401 (458)
T PRK11906 385 N----EKIEEARICIDKSLQL 401 (458)
T ss_pred c----CCHHHHHHHHHHHhcc
Confidence 8 5789999999999986
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.31 E-value=17 Score=39.74 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=73.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
-|-.+...|+.++|.+.-.=|+.--|.. +.-..--|-++.... -+..|+++|.+|..|.||.-+.-
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g-----------~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQK-----------HWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCchHH
Confidence 3467788899999999888888777777 555555566665443 34789999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
-..|..++.++ ..+.|..-.+.|+.+.
T Consensus 107 ~~ag~c~L~lG----~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACD----NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHHh
Confidence 99999999994 5577777777788775
No 107
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=7.8 Score=46.14 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000342 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1634)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l 152 (1634)
+...+.+++.-...||++ +-=.-+-|.+++.+.+ ...|+.+|++|.+|.|+..++...+|..|+..
T Consensus 138 ~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~-----------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 138 MEALIARLETHLQQNPGD---AEGWDLLGRAYMALGR-----------ASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcc-----------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 566677777777788888 4445666777777653 25799999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcc
Q 000342 153 ANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 153 ~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+.. +.=.++..-.+.||..
T Consensus 204 a~~-~~ta~a~~ll~~al~~ 222 (287)
T COG4235 204 AGQ-QMTAKARALLRQALAL 222 (287)
T ss_pred cCC-cccHHHHHHHHHHHhc
Confidence 843 4555555556677764
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=79.41 E-value=5.5 Score=46.77 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
..|+.+|.+|..+.|+...+...++.+|+.. +.|+++..-+.+..... |.||.-.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~----~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDM----GDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHHHC-cCHHHHH
Confidence 4789999999999999999888888888877 45666433333333322 7777655
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=79.35 E-value=22 Score=41.47 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-------ccCChhHHHHHHHHHHHHHHHHhhh
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-------IIDDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-------~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
.-+.-.++.|++.+|+...++++..||++..++-+++..|..++.+.. .++..+--....+.|+..+.+-+..
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 344566899999999999999999999999999999999988776642 1223333355778999999999999
Q ss_pred CCChH
Q 000342 135 SPHSV 139 (1634)
Q Consensus 135 ~P~sl 139 (1634)
+|||-
T Consensus 154 yP~S~ 158 (243)
T PRK10866 154 YPNSQ 158 (243)
T ss_pred CcCCh
Confidence 99995
No 110
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=79.06 E-value=5.2 Score=46.95 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=63.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
.-..+.|+.++|++..++.....|++ ..++..-+.+..+.. +. .-++.++..+.++. |+.-.+-..
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~li~~~----~~----~~~~~~l~~~~~~~---~~~~~~~~~ 219 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLLIDMG----DY----DEAREALKRLLKAA---PDDPDLWDA 219 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTC----HH----HHHHHHHHHHHHH----HTSCCHCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCC----Ch----HHHHHHHHHHHHHC---cCHHHHHHH
Confidence 44567888999999999988888887 555554454444322 11 11345555555555 555556567
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
+|.+++.+ +.|++|..-..+++. .+|.||.-.
T Consensus 220 la~~~~~l----g~~~~Al~~~~~~~~-~~p~d~~~~ 251 (280)
T PF13429_consen 220 LAAAYLQL----GRYEEALEYLEKALK-LNPDDPLWL 251 (280)
T ss_dssp HHHHHHHH----T-HHHHHHHHHHHHH-HSTT-HHHH
T ss_pred HHHHhccc----ccccccccccccccc-ccccccccc
Confidence 89999999 578999999988887 467777666
No 111
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=78.93 E-value=1.3 Score=32.77 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.0
Q ss_pred EecccchhccCChhHHHHhhhhh
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~ 411 (1634)
|.|..|.+.|.+...+..|+..+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999653
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=78.03 E-value=8.7 Score=39.48 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccH
Q 000342 80 MKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEY 159 (1634)
Q Consensus 80 ~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y 159 (1634)
.+.+.+.+|+. +.++...|..++.... ...|+..+.++..+.|+....-..+|..++.. +.|
T Consensus 6 ~~~~l~~~p~~---~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~ 67 (135)
T TIGR02552 6 LKDLLGLDSEQ---LEQIYALAYNLYQQGR-----------YDEALKLFQLLAAYDPYNSRYWLGLAACCQML----KEY 67 (135)
T ss_pred HHHHHcCChhh---HHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----HHH
Confidence 55666788888 7777888888776531 25788999999999999999999999999999 578
Q ss_pred HHHHHHHHHHhcccCCCCCCc
Q 000342 160 EEVVQECERALAIENPIDPAK 180 (1634)
Q Consensus 160 ~~a~~e~~RAL~I~~P~DPa~ 180 (1634)
.+|...+.+++.+. |.+|..
T Consensus 68 ~~A~~~~~~~~~~~-p~~~~~ 87 (135)
T TIGR02552 68 EEAIDAYALAAALD-PDDPRP 87 (135)
T ss_pred HHHHHHHHHHHhcC-CCChHH
Confidence 99999999998873 444433
No 113
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.96 E-value=8.3 Score=51.50 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000342 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1634)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1634)
..+.-...|...+..|++++|+...+.....+|.+ +-+++..|.++..+.. - ..|+..+.++..+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~----~-------~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGD----Y-------AAAEKELRKALSLG 86 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHcC
Confidence 34556778889999999999999999999999999 8899999999987642 1 46888888888889
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Q 000342 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECER 168 (1634)
Q Consensus 136 P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~R 168 (1634)
|+.......+|++++.. +.|++|...+..
T Consensus 87 ~~~~~~~~~~a~~~~~~----g~~~~a~~~~~~ 115 (899)
T TIGR02917 87 YPKNQVLPLLARAYLLQ----GKFQQVLDELPG 115 (899)
T ss_pred CChhhhHHHHHHHHHHC----CCHHHHHHhhcc
Confidence 98888888888888877 467877765543
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.81 E-value=13 Score=40.31 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
..-++-+...|++.+|++..+.....+|.. +-.|...|.+++.+++ ...+......++..|+..|.++..+.|+
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 334567778899999999999988888887 6667777888887663 3445555567888999999999999998
Q ss_pred hH
Q 000342 138 SV 139 (1634)
Q Consensus 138 sl 139 (1634)
..
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 76
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=77.25 E-value=5.4 Score=36.09 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
...|+..|.++....|+..++-..+|.+++.. +.|++|...+.+++..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999 6899999999888775
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=77.21 E-value=10 Score=46.62 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
...|..+...|++.+|+..++.++...|.. +.+|+..|.+++.+.. +..|+.+|.+|..+.|+...
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~-----------~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEE-----------YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Confidence 456677888999999999999999999999 8889999999987642 25899999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 000342 141 FAHFYANLLYEAA 153 (1634)
Q Consensus 141 ia~~~A~~L~~l~ 153 (1634)
+....+.....+.
T Consensus 106 ~~~~l~~~~~kl~ 118 (356)
T PLN03088 106 FTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766663
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.02 E-value=10 Score=40.36 Aligned_cols=78 Identities=12% Similarity=-0.041 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
...+.-+.+.|++.+|+......+...|+. +.+|+-.|.++..+.. . ..|+.+|.+|..+.|+..+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~----~-------~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGE----P-------GLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhCCCChH
Confidence 344566788899999999999999999999 8999999999987753 2 5799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000342 141 FAHFYANLLYEA 152 (1634)
Q Consensus 141 ia~~~A~~L~~l 152 (1634)
.....+.++..+
T Consensus 128 ~~~~~~~~~~~l 139 (144)
T PRK15359 128 WSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHH
Confidence 998888877766
No 118
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=76.86 E-value=1.1 Score=51.18 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=30.2
Q ss_pred HHHHHHHHhc----CceeEEecccchhccCChhHHHHhhhhhhccCC
Q 000342 374 AEALAFAEEN----KTWRFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1634)
Q Consensus 374 s~al~fak~n----~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H~~~~ 416 (1634)
.++-.|++++ ..|+ |.|+.|+|+|...+=-..||..+|...+
T Consensus 60 ~eve~~v~~~~~e~~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 60 EEVEKFVQKNTKEEDEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp HHHGGGEEEEE-SSSSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 3344455443 6787 9999999999999999999999998643
No 119
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.11 E-value=22 Score=44.11 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHHHHH---cCCHHHHHHHHHH-HHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 63 RALTALR---RGNHKKALRLMKE-LSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 63 ~al~~~~---~G~h~kAL~~~~e-L~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
-|+.+-| .|++.+|+..+.. |....+.+ +=...+-|.|+.++.......+ ..+|..|.++|.+|-++.|+-
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~---~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPD---PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCccc
Confidence 4577777 8999999999999 77777777 8899999999999875433333 345999999999999999753
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000342 139 VEFAHFYANLLYEAAND 155 (1634)
Q Consensus 139 l~ia~~~A~~L~~l~~~ 155 (1634)
=...=+|.+|...|.+
T Consensus 260 -Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 260 -YSGINAATLLMLAGHD 275 (374)
T ss_pred -cchHHHHHHHHHcCCc
Confidence 2222334456666544
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=75.96 E-value=25 Score=47.11 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=88.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000342 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1634)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1634)
.+.|..-+-.+-+.+.+..|+..+||+....|-.+||++ .-+..+-|.++.++.+. .-|+.|+..-
T Consensus 4 ~~~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~-----------~ea~~~Le~~ 69 (932)
T KOG2053|consen 4 AELAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKG-----------DEALKLLEAL 69 (932)
T ss_pred hhhccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCc-----------hhHHHHHhhh
Confidence 455667777888899999999999999999999999998 67777888888887653 2455677777
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcccc
Q 000342 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1634)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v 183 (1634)
..+-|+.-.+--++-..+-++ +.|++|+.=..||+.. +|.++++
T Consensus 70 ~~~~~~D~~tLq~l~~~y~d~----~~~d~~~~~Ye~~~~~----~P~eell 113 (932)
T KOG2053|consen 70 YGLKGTDDLTLQFLQNVYRDL----GKLDEAVHLYERANQK----YPSEELL 113 (932)
T ss_pred ccCCCCchHHHHHHHHHHHHH----hhhhHHHHHHHHHHhh----CCcHHHH
Confidence 778888777777777777777 5789999889999874 6777755
No 121
>PRK11189 lipoprotein NlpI; Provisional
Probab=75.24 E-value=9 Score=45.81 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHccCchh-hHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000342 71 GNHKKALRLMKELSSRHENSAY-VALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1634)
Q Consensus 71 G~h~kAL~~~~eL~~~h~~S~~-~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1634)
+....+++++.+++.+.+-+.. -+.+|+..|.++..... ...|+..|.+|..+.|+....-..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-----------~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-----------RALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455677777777765543211 16778888888776642 24788999999999999999999999988
Q ss_pred HHHhccCccHHHHHHHHHHHhcccCCCC
Q 000342 150 YEAANDGKEYEEVVQECERALAIENPID 177 (1634)
Q Consensus 150 ~~l~~~~~~Y~~a~~e~~RAL~I~~P~D 177 (1634)
... +.|++|.....+||.+. |.+
T Consensus 109 ~~~----g~~~~A~~~~~~Al~l~-P~~ 131 (296)
T PRK11189 109 TQA----GNFDAAYEAFDSVLELD-PTY 131 (296)
T ss_pred HHC----CCHHHHHHHHHHHHHhC-CCC
Confidence 888 68999999999999973 443
No 122
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=75.22 E-value=13 Score=44.70 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
...-.++-+...|++.+|+...++.+...|.+ +.+++.-|+++++... +..|+..+.++..+.|..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~-----------~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGR-----------FKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCC-----------HHHHHHHHHhhhhccCCC
Confidence 33445567788999999999999999999999 7788888999998653 246888888888888754
Q ss_pred HHH----HHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 139 VEF----AHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 139 l~i----a~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
... ...+|..++.. +.|++|.....+++..
T Consensus 182 ~~~~~~~~~~la~~~~~~----G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 182 SMLRGHNWWHLALFYLER----GDYEAALAIYDTHIAP 215 (355)
T ss_pred cchhHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcc
Confidence 322 12456666666 6899999888888654
No 123
>PHA00616 hypothetical protein
Probab=75.14 E-value=1.5 Score=37.64 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.6
Q ss_pred ecccchhccCChhHHHHhhhhhhcc
Q 000342 390 VCCRCNEKFADSESHMHHVVQQHMG 414 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~~ 414 (1634)
.|+.||+.|....++..|+..-|-+
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 6999999999999999999777765
No 124
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.83 E-value=22 Score=44.88 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000342 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1634)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1634)
..-.-...+..++..|++++|+...+..+...|++..+..+|+-.|..+..+.. +..|++++.+|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-----------~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-----------GKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhc
Confidence 344556678899999999999999999998999982222557777888777642 257888888888874
No 125
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.60 E-value=6.3 Score=50.93 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCC-----------hhHHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDD-----------LNSKQRHLKNAIE 126 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~-----------~~~k~~~L~~Al~ 126 (1634)
.++|+.|++-.+..+...|+- +-+|-|+||-|...-. +.++ -..|+.=+..|.-
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 478999999999999899988 7899999998875521 1111 1223333456777
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCc
Q 000342 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1634)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~ 180 (1634)
.|.+|+...|.+.+|..-+...+..+ +.+++|..-..+|+.+. |.||..
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~----k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL----KRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh----hhhhHHHHHHHHHHhcC-CCCchh
Confidence 89999999999999999999999999 68999999999999873 777654
No 126
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.20 E-value=26 Score=41.43 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
++=..|++++..|++..|...-.+.+.++|+|.+.+.+|+--|..+|.+..- ..|...|.....-.|.|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------EDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------hHHHHHHHHHHHhCCCC
Confidence 3778899999999999999999999999999999999999999999988521 34455555555566665
Q ss_pred H---HHHHHHHHHHHHHhcc
Q 000342 139 V---EFAHFYANLLYEAAND 155 (1634)
Q Consensus 139 l---~ia~~~A~~L~~l~~~ 155 (1634)
- +--.=+|..+..+++.
T Consensus 212 ~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred CCChHHHHHHHHHHHHhcCH
Confidence 4 5566678888888654
No 127
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=72.49 E-value=1.9 Score=38.42 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.3
Q ss_pred eEEecccchhccCChhHHHHhhhhhhccCC
Q 000342 387 RFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1634)
Q Consensus 387 ~fWiCp~C~~kF~d~~~~~~Hl~~~H~~~~ 416 (1634)
.|.-||+|++.|-+..++..|+---|...+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 588999999999999999999988886543
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=72.44 E-value=24 Score=44.12 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhcc--CChhHHHHHHHHHHHHHHHHhhh
Q 000342 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASII--DDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~--~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
.+-....|..+...|++++|++.+.+....+|.+ ....+. .+...... ++. ..++..+.++...
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~~~~~~----~l~~~~~l~~~~~-------~~~~~~~e~~lk~ 328 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---RAISLP----LCLPIPRLKPEDN-------EKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---ccchhH----HHHHhhhcCCCCh-------HHHHHHHHHHHHh
Confidence 3444555678899999999999999999999988 321100 11111111 222 3678899999999
Q ss_pred CCChH--HHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 135 SPHSV--EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 135 ~P~sl--~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.|+.. .+...+|.+++.. +.|++|....++|.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~----~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKH----GEFIEAADAFKNVAAC 364 (409)
T ss_pred CCCChhHHHHHHHHHHHHHc----ccHHHHHHHHHHhHHh
Confidence 99999 8888999999988 6899999988865554
No 129
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=71.79 E-value=14 Score=43.28 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
..-|-...+.|+++.|+.-+++.+..||+|..++-|.++.|..++.. +++.+--..+-+.|...+..-+.-+|||=
T Consensus 75 l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 75 LDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 34446667788888888888888888888877788888888886643 45555556788899999999999999984
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=71.25 E-value=19 Score=39.35 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
-+..+.+.|++.+|++...+.+..+|.. +.++..-|.++..++. ...+.+....++..|++++.++..+.|+..
T Consensus 78 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 78 MGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 3466788899999999999999999988 6777777888877642 223445556678899999999999999874
No 131
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.20 E-value=2.7 Score=37.46 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred ecccchhccCChhHHHHhhhhhhccC
Q 000342 390 VCCRCNEKFADSESHMHHVVQQHMGN 415 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~~~ 415 (1634)
.||+|++ -.+..+|+.|+..+|...
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSE 28 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCC
Confidence 5999999 677899999999999975
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=70.69 E-value=11 Score=37.27 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1634)
..+.-+++.|++..|+...+++...+|++.+.+.++...|.++.++. +. ..|+..+.++..+.|++..
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~-------~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG----DK-------EKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC----Ch-------HHHHHHHHHHHHHCcCChh
Confidence 35677889999999999999999999987555667788888877543 22 4788999999999999764
No 133
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.73 E-value=22 Score=38.25 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHH
Q 000342 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIES 127 (1634)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~ 127 (1634)
+-.++|...+..|++.-|+.+++-|+...|+. .-+..+....+.+++...+++..+.-||-.|.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n---~~ar~l~A~al~~lg~~~~~~~~Rn~yL~~A~EL 137 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDN---EEARQLKADALEQLGYQSENANWRNYYLTGAKEL 137 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 44566777889999999999999999999998 7899999999999999999999999999888775
No 134
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=67.96 E-value=38 Score=42.30 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh--------------ccCChhHHH-----HHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS--------------IIDDLNSKQ-----RHLK 122 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~--------------~~~~~~~k~-----~~L~ 122 (1634)
..+.-....|++.+|++.++++....|++ +-++.+.+.++.+... ...+++... .|+.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999 7888888888876631 111111111 1211
Q ss_pred ------------HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 123 ------------NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 123 ------------~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
........-..-.|+...+...+|+++... +.+++|.....+++. .|-||
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~----g~~~~A~~~L~~~l~--~~~~~ 296 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC----DDHDTAQQIILDGLK--RQYDE 296 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHh--cCCCH
Confidence 011111222245577899999999999999 578999999999998 34455
No 135
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=67.77 E-value=2.4 Score=32.28 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=20.1
Q ss_pred EecccchhccCChhHHHHhhhh
Q 000342 389 WVCCRCNEKFADSESHMHHVVQ 410 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~ 410 (1634)
|.|..|++.|.+...+..|+..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5799999999999999999965
No 136
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.58 E-value=15 Score=43.16 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
.++++.++.||..+|..-.+.|.++||+|..+.-+....+..+|+-. + ...|+..+.+-.+|.|++.++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~----~-------y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG----E-------YDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc----c-------HHHHHHHHHHHHHhCCCCCCh
Confidence 56788999999999999999999999999766666666666666432 2 247899999999999999876
Q ss_pred HH
Q 000342 142 AH 143 (1634)
Q Consensus 142 a~ 143 (1634)
+-
T Consensus 108 dY 109 (254)
T COG4105 108 DY 109 (254)
T ss_pred hH
Confidence 53
No 137
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.51 E-value=6 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCc
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENS 90 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S 90 (1634)
|.-..+.|++++|++..++++.+||+|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 455667899999999999999999987
No 138
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.44 E-value=19 Score=43.40 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=57.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh-CCChHHHH
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL-SPHSVEFA 142 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L-~P~sl~ia 142 (1634)
|--++.||+|.+|-..=++|..+||.+ -++....-+.|+-.... .....++.+..-- .|+-.-+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~-----------~~~k~ai~kIip~wn~dlp~~s 175 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQ-----------IGKKNAIEKIIPKWNADLPCYS 175 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccch-----------hhhhhHHHHhccccCCCCcHHH
Confidence 355788999999988899999999997 33333333333333211 1111111111111 12211112
Q ss_pred H---HHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 143 H---FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 143 ~---~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
. .||--|.++ +.|++|+..+.|||.| ||.|-..+
T Consensus 176 Yv~GmyaFgL~E~----g~y~dAEk~A~ralqi-N~~D~Wa~ 212 (491)
T KOG2610|consen 176 YVHGMYAFGLEEC----GIYDDAEKQADRALQI-NRFDCWAS 212 (491)
T ss_pred HHHHHHHhhHHHh----ccchhHHHHHHhhccC-CCcchHHH
Confidence 2 345556666 6899999999999998 56665443
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.98 E-value=23 Score=42.30 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=73.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000342 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1634)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1634)
++...+++.+|+..=.+.+.--|.+ |+.|.=.+.+|.++. ....|+.-...|..+.|+....--.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4667788999998888888778888 776666666665553 23578889999999999999999999
Q ss_pred HHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 146 A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..+++.+ +.|++|+...++||.|
T Consensus 156 G~A~~~~----gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 156 GLAYLAL----GKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHcc----CcHHHHHHHHHhhhcc
Confidence 9999988 5899999999999998
No 140
>smart00355 ZnF_C2H2 zinc finger.
Probab=66.93 E-value=3.7 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.9
Q ss_pred EecccchhccCChhHHHHhhhhhhc
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1634)
+.|+.|++.|.+...+..|+. .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 369999999999999999997 664
No 141
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=66.76 E-value=3.8 Score=40.06 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEecccchhccCChhHHHHhhhhhh
Q 000342 388 FWVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 388 fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
-|.|+.|++.|.+.+.+..||...|
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5999999999999999999998764
No 142
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=66.02 E-value=64 Score=39.30 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000342 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAA 132 (1634)
Q Consensus 53 ~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~ 132 (1634)
+.+.+.+.-+---.++.+|....||..-...+.-.|++ ..+.+-.|++|.++.+. ++|+.=+++-.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGks-----------k~al~Dl~rVl 99 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKS-----------KAALQDLSRVL 99 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCC-----------ccchhhHHHHH
Confidence 34677777777788999999999998888888888999 99999999999999864 57888899999
Q ss_pred hhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhc
Q 000342 133 ELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1634)
Q Consensus 133 ~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~ 171 (1634)
+|-|+=..--.-++.+|... +.|+.|++....-|.
T Consensus 100 elKpDF~~ARiQRg~vllK~----Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 100 ELKPDFMAARIQRGVVLLKQ----GELEQAEADFDQVLQ 134 (504)
T ss_pred hcCccHHHHHHHhchhhhhc----ccHHHHHHHHHHHHh
Confidence 99999776666677788877 589999998876665
No 143
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=64.67 E-value=6 Score=31.88 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=29.4
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHH
Q 000342 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVV 163 (1634)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~ 163 (1634)
+|.+|.++.|+..+.-.-+|.+|... |.|++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 58999999999999999999999988 5778774
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=64.59 E-value=82 Score=41.01 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHH
Q 000342 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHSVEFAHFYANLLY 150 (1634)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L--~P~sl~ia~~~A~~L~ 150 (1634)
+.+|+...++.++..|+. +.+|-..+..+..... ..+ .....+..+.+.+.+|..+ .|..-.+ ..|..+.
T Consensus 358 ~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~-~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~--~~ala~~ 429 (517)
T PRK10153 358 LNKASDLLEEILKSEPDF---TYAQAEKALADIVRHS-QQP--LDEKQLAALSTELDNIVALPELNVLPRI--YEILAVQ 429 (517)
T ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHh-cCC--ccHHHHHHHHHHHHHhhhcccCcCChHH--HHHHHHH
Confidence 678998899999999998 6666655554433322 111 1123445666666666664 4444332 3333344
Q ss_pred HHhccCccHHHHHHHHHHHhccc
Q 000342 151 EAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 151 ~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
.+.. +.|++|..+..||+.+.
T Consensus 430 ~~~~--g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 430 ALVK--GKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHhc--CCHHHHHHHHHHHHHcC
Confidence 3332 58999999999999985
No 145
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=61.81 E-value=4.7 Score=30.54 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.8
Q ss_pred ecccchhccCChhHHHHhh
Q 000342 390 VCCRCNEKFADSESHMHHV 408 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl 408 (1634)
.||.|+++| ..+++..|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 599999999 778888886
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.92 E-value=60 Score=38.92 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHH---HHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 66 TALRRGNHKKAL---RLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 66 ~~~~~G~h~kAL---~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
-..+.|+...|+ ..+-.|. |.. +-+.-.-|.++|..+....++ .+-+.+.+|..+.|+.|..-
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~---g~n---~~~~~g~aeaL~~~a~~~~ta--------~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLA---GDN---PEILLGLAEALYYQAGQQMTA--------KARALLRQALALDPANIRAL 230 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCcccH--------HHHHHHHHHHhcCCccHHHH
Confidence 345556655554 4444444 666 666667788888887554444 46788999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~ 182 (1634)
.++|...|+- +.|++|+.--..=|..-.|.||...-
T Consensus 231 ~lLA~~afe~----g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 231 SLLAFAAFEQ----GDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHHc----ccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999 58999987776667776666666653
No 147
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=60.56 E-value=4.8 Score=30.35 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.5
Q ss_pred ecccchhccCChhHHHHhhhhh
Q 000342 390 VCCRCNEKFADSESHMHHVVQQ 411 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~ 411 (1634)
.|..|++.|.+...|..|+..-
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCTT
T ss_pred CCCccCCccCChhHHHHHhHHh
Confidence 5999999999999999999443
No 148
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.56 E-value=82 Score=33.13 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh------hHHH---HHhhchhhHHHhhccCChhHHHHHHHHH
Q 000342 54 YGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAY------VALI---HRVQGTVCVKVASIIDDLNSKQRHLKNA 124 (1634)
Q Consensus 54 ~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~------~a~~---h~lqG~i~~~~a~~~~~~~~k~~~L~~A 124 (1634)
.......+..+....+.|++..|+...++.++-+.|.-. .|+. .+++. .+..+....-...........|
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~-~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE-LYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCHHHH
Confidence 345667778888889999999999999998888855311 0111 01111 1111111100101111123578
Q ss_pred HHHHHHHhhhCCChHHHHHHHHHHHHHHhccCc---cHHHHHHHHHHHhcc
Q 000342 125 IESAKKAAELSPHSVEFAHFYANLLYEAANDGK---EYEEVVQECERALAI 172 (1634)
Q Consensus 125 l~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~---~Y~~a~~e~~RAL~I 172 (1634)
+..+.++..+.|-.=..-..+-+++..+|+... .|+.+.+...+-|+|
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999998888888888888865422 444444444444443
No 149
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=60.00 E-value=26 Score=47.46 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000342 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1634)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1634)
-|..=.=+|.-++.+||+..||..-+.+....|... |-+...-|+-|.++.. + .-|+-++.+|..|.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~----~-------~~a~~a~~ralqLd 229 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGM----S-------EKALLAFERALQLD 229 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccc----h-------hhHHHHHHHHHhcC
Confidence 344445566778888999999999888777777654 4555556777766542 2 47889999999999
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccc
Q 000342 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1634)
Q Consensus 136 P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~ 182 (1634)
|.||.....+|-+.+..- +...|++++.-..||-.+ +|-+|-.-+
T Consensus 230 p~~v~alv~L~~~~l~~~-d~~s~~~~~~ll~~ay~~-n~~nP~~l~ 274 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFN-DSDSYKKGVQLLQRAYKE-NNENPVALN 274 (1018)
T ss_pred hhhHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhh-cCCCcHHHH
Confidence 999999999998777663 336899999999999987 466665443
No 150
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=59.82 E-value=73 Score=43.08 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=81.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000342 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1634)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1634)
++...+-..+.+| +...|++.+||+.+-.++..-+.-. +.+...+|..++++. +-..|.++|-.+
T Consensus 411 ~d~~dL~~d~a~a--l~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-----------e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLADA--LTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-----------EYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHHH--HHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh-----------hHHHHHHHHHHH
Confidence 4445555555555 4578999999999999995544332 455566666666553 447899999999
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccccchhhhhhhhchHHHHHH
Q 000342 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAH 200 (1634)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~ 200 (1634)
..+.|++++.=.-+|.++..+|++ ++|+. + ++++.+|...++. .....|+.|+--
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~----EkalE----t--L~~~~~~D~~~~e----~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNH----EKALE----T--LEQIINPDGRNAE----ACAWEPERRILA 530 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCH----HHHHH----H--HhcccCCCccchh----hccccHHHHHHH
Confidence 999999999999999999999654 55542 2 3445555544432 123356666553
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=58.48 E-value=81 Score=33.37 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000342 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 55 ~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
-+....-.-|..++..|+.++|++..+.++...|.....+++..--+.+.+... +.+ .|+..+.....
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----~~d-------~Al~~L~~~~~- 113 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----QYD-------EALATLQQIPD- 113 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----CHH-------HHHHHHHhccC-
Confidence 445556667778889999999999999999887665444566555566666542 222 44444433211
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHh
Q 000342 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERAL 170 (1634)
Q Consensus 135 ~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL 170 (1634)
.+-.-......+.+++.. +.|++|......||
T Consensus 114 ~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 111223455667777776 68999998888775
No 152
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.05 E-value=23 Score=44.71 Aligned_cols=69 Identities=19% Similarity=0.012 Sum_probs=53.5
Q ss_pred ccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH---HHHHHHHHHHHhccCccHHHHH
Q 000342 87 HENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF---AHFYANLLYEAANDGKEYEEVV 163 (1634)
Q Consensus 87 h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i---a~~~A~~L~~l~~~~~~Y~~a~ 163 (1634)
.|+. +.+|+-.|.+++++.+ ...|+.+|++|..+.|+..+. -.-+|-.+..+ +.+++|.
T Consensus 71 dP~~---a~a~~NLG~AL~~lGr-----------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEAl 132 (453)
T PLN03098 71 DVKT---AEDAVNLGLSLFSKGR-----------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKAA 132 (453)
T ss_pred CCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHHH
Confidence 4666 7788888888877642 268999999999999998865 34445555555 6899999
Q ss_pred HHHHHHhccc
Q 000342 164 QECERALAIE 173 (1634)
Q Consensus 164 ~e~~RAL~I~ 173 (1634)
....+||.+.
T Consensus 133 a~LrrALels 142 (453)
T PLN03098 133 DCLRTALRDY 142 (453)
T ss_pred HHHHHHHHhc
Confidence 9999999983
No 153
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=58.02 E-value=63 Score=38.05 Aligned_cols=123 Identities=18% Similarity=0.257 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1634)
+-.+.-+|+-+.++..+-.++..||.+ .=+|+.+|........ +..|+..+++|+++.|+.-+.=.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g~-----------~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNGN-----------FGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhcc-----------hHHHHHHHHHHhccCCCChhhhh
Confidence 344455677778888888888888888 6666667777765541 25799999999999999999999
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC-ccccchhhhhhhhchHHHHHHHHHHHHHHHH
Q 000342 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPA-KESLQDESQQKILTADARIAHVQSELRSLIQ 210 (1634)
Q Consensus 144 ~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa-~~~v~~~~~~~~~~~~~rv~~~~~eL~~li~ 210 (1634)
.++-.|-.+ +..+.|......|+.+- |.+|. -+|+.+ ..-...+.+.+++.|+.+..
T Consensus 139 ~lgaaldq~----Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm-----s~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 139 LLGAALDQL----GRFDEARRAYRQALELA-PNEPSIANNLGM-----SLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHc----cChhHHHHHHHHHHHhc-cCCchhhhhHHH-----HHHHcCCHHHHHHHHHHHHh
Confidence 999888888 56788999999998873 33332 233322 22233445666665555443
No 154
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.55 E-value=1.4e+02 Score=34.17 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=66.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000342 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1634)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1634)
.+|.+|++.+|..--.+...--|.- -..++.-+|-.-|. +-+|..-...|++..++|.+|-|.-..--..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraa----a~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAA----ALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHH----HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4688888888876555544343331 11333333333322 23556666789999999999999877766777
Q ss_pred HHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 146 A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
|.++-.+ +.|++|+...+.-|.+ ||..+
T Consensus 175 Aeayek~----ek~eealeDyKki~E~----dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKM----EKYEEALEDYKKILES----DPSRR 202 (271)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHh----CcchH
Confidence 8877777 5799999888877765 56655
No 155
>PRK14574 hmsH outer membrane protein; Provisional
Probab=57.28 E-value=45 Score=45.77 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCc
Q 000342 57 IKLECERALTALRRGNHKKALRLMKELSSRHENS 90 (1634)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S 90 (1634)
+...=+.|+-.++.|+++.|+....++....|.+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~ 67 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ 67 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc
Confidence 3355677899999999999999999999999998
No 156
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.07 E-value=59 Score=41.65 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=74.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
-.+|+.|++.+|++.-.+.+.+.|++ +.+..=.+.-|..+. ..-.||.....+.+|.|+-+.-=..
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHH
Confidence 67899999999999999999999999 777776666666654 3356777788899999998877677
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
=|..|+.+ +.|.+|..-+..||..
T Consensus 432 Kg~al~~m----k~ydkAleay~eale~ 455 (539)
T KOG0548|consen 432 KGAALRAM----KEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 78888888 7899999888888875
No 157
>PHA02768 hypothetical protein; Provisional
Probab=55.98 E-value=6.3 Score=35.64 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.9
Q ss_pred ecccchhccCChhHHHHhhhhhhc
Q 000342 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1634)
.|+.||+.|+....|..|+.. |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 699999999999999999976 54
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=55.61 E-value=21 Score=30.03 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhc
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQG 101 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG 101 (1634)
|..+.+.|++++|.+..+++++.+|++ +.+++.-|
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La 42 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALA 42 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhh
Confidence 466788999999999999999999999 65555544
No 159
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.33 E-value=19 Score=46.21 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1634)
.|.+++|..--+-.....|+. +++-+--|-....-. -+ .-|+.+|.+|..|-|+=|..=.=+|-+-
T Consensus 443 s~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~----~s-------~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGN----RS-------EEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred chHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCc----cc-------HHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 477888887777777788888 666665554433221 11 4799999999999999997766677777
Q ss_pred HHHhccCccHHHHHHHHHHHhcc
Q 000342 150 YEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 150 ~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..+ |.|++|+...-+||.+
T Consensus 509 mNl----G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 509 MNL----GAYKEAVKHLLEALSM 527 (579)
T ss_pred hhh----hhHHHHHHHHHHHHHh
Confidence 777 6999999999999998
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=54.95 E-value=57 Score=42.45 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa 179 (1634)
..|...+.+|..|.|+ ...-.++++++... |.+++|...+.||+.+ +|.+|-
T Consensus 437 ~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~----G~~~eA~~~~~~A~~L-~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEMS-WLNYVLLGKVYELK----GDNRLAADAYSTAFNL-RPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc-CCCCch
Confidence 5799999999999996 44555567666666 6899999999999997 476663
No 161
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.86 E-value=52 Score=41.78 Aligned_cols=84 Identities=13% Similarity=0.261 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHH
Q 000342 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1634)
Q Consensus 72 ~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~ 151 (1634)
++.+|++--++-++-.|++ +.+|.--+...|+++ -+..+.-.|.++.+-||+|.|-=.|+|..|-.
T Consensus 409 q~e~A~aDF~Kai~L~pe~---~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPEN---AYAYIQLCCALYRQH-----------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 3444444444444444444 444443344444333 23456778899999999999999999999987
Q ss_pred HhccCccHHHHHHHHHHHhccc
Q 000342 152 AANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 152 l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
- .++++|+.....|+-.+
T Consensus 475 q----qqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 475 Q----QQFDKAVKQYDKAIELE 492 (606)
T ss_pred H----HhHHHHHHHHHHHHhhc
Confidence 6 57888888888887765
No 162
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.73 E-value=46 Score=42.81 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccc
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~ 182 (1634)
..|..||..|++|+|.|=.=..+.+.-.-.+ +-++.|..=...|++|. |.||-..+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t----~n~kLAe~Ff~~A~ai~-P~Dplv~~ 418 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRT----NNLKLAEKFFKQALAIA-PSDPLVLH 418 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHh----ccHHHHHHHHHHHHhcC-CCcchhhh
Confidence 5689999999999999988888888776666 46788888888999985 99997654
No 163
>PLN02789 farnesyltranstransferase
Probab=53.65 E-value=71 Score=39.02 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000342 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1634)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1634)
..+.+.+||....+.+..+|.. .-+.+..|.+..++. ..+..+++++.++....|++..+=+.++-+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~---ytaW~~R~~iL~~L~----------~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGN---YTVWHFRRLCLEALD----------ADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHHcc----------hhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 4567999999999999999999 778888888887662 245789999999999999999887777777
Q ss_pred HHHHhccCccHHHHHHHHHHHhcc
Q 000342 149 LYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 149 L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+..++.. .|+++..-+.++|.+
T Consensus 116 l~~l~~~--~~~~el~~~~kal~~ 137 (320)
T PLN02789 116 AEKLGPD--AANKELEFTRKILSL 137 (320)
T ss_pred HHHcCch--hhHHHHHHHHHHHHh
Confidence 7666421 245555556677765
No 164
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.07 E-value=7.9 Score=48.63 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 115 NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 115 ~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
..|..++.-|++.|++|.+|.|||..+..-+|.+.+.. +.|..|+..|-.|+...
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~----e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV----ESFGGALHDALKAIELD 68 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheee----chhhhHHHHHHhhhhcC
Confidence 34455778999999999999999999999999777777 68999999999999874
No 165
>PF13945 NST1: Salt tolerance down-regulator
Probab=51.61 E-value=12 Score=42.02 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccCCHHHHhceeEeehHHHHH
Q 000342 329 ERRDFVRSYWNSMSLEMKRELLKVKVCDIKA 359 (1634)
Q Consensus 329 ~r~~~vr~yW~~m~~e~kr~fL~V~i~~L~~ 359 (1634)
.-...++.||-+|+.++||++++|.=+.+..
T Consensus 102 eEre~LkeFW~SL~eeERr~LVkIEKe~VLk 132 (190)
T PF13945_consen 102 EEREKLKEFWESLSEEERRSLVKIEKEAVLK 132 (190)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhHHHHHH
Confidence 3456789999999999999998887444433
No 166
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=51.15 E-value=57 Score=39.60 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHH
Q 000342 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1634)
Q Consensus 71 G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~ 150 (1634)
.+..||+..|.+|..--|.- -.+...|=+--+++....++. +.+|++.+.+|..-.|+|+.-...++++..
T Consensus 155 reW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSD------VDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred hHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 45779999999998433333 222222222222222333333 256899999999999999999999999888
Q ss_pred HHhccCccHHHHHHHHHHHhc
Q 000342 151 EAANDGKEYEEVVQECERALA 171 (1634)
Q Consensus 151 ~l~~~~~~Y~~a~~e~~RAL~ 171 (1634)
.- |.|++|+....+.+.
T Consensus 226 ~~----g~y~~AV~~~e~v~e 242 (389)
T COG2956 226 AK----GDYQKAVEALERVLE 242 (389)
T ss_pred hc----cchHHHHHHHHHHHH
Confidence 77 689999977766665
No 167
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=51.09 E-value=7.3 Score=43.12 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=27.1
Q ss_pred EEEeC-ceEEEEEEeCCCCcEEEEcCCceEEeC-Chhhhhh
Q 000342 1578 VCYYG-QHYHCFAYSHDQERWIMYDDKTVKVVG-SWSDVLS 1616 (1634)
Q Consensus 1578 V~H~G-GHYtAyVR~~~~~kW~~FDDs~Vt~Vs-~weeVLs 1616 (1634)
|.-.| ||-+.++. ..+.||.+||+.+.+-+ .|++||-
T Consensus 133 i~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tPdp~~VLv 171 (193)
T PF05408_consen 133 IFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTPDPSDVLV 171 (193)
T ss_dssp EEEESTTEEEEEEE--ETTCEEEEETTEEEE----GGGEEE
T ss_pred heecCCcceEEEEE--eeCcEEEecCCeeeeCCCChhheEE
Confidence 44445 99999998 67899999999998765 4667664
No 168
>PLN02789 farnesyltranstransferase
Probab=50.97 E-value=89 Score=38.16 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=71.3
Q ss_pred HcC-CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHH
Q 000342 69 RRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYAN 147 (1634)
Q Consensus 69 ~~G-~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~ 147 (1634)
..| +..+||+...+++..+|++ .-+.+-.|-+...+.. .....+++++.+|..+.|+....=..++-
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkNy~AW~~R~w 150 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKN---YQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKNYHAWSHRQW 150 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcc---hHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 335 4689999999999999999 6666767777665532 12346899999999999999998888888
Q ss_pred HHHHHhccCccHHHHHHHHHHHhcc
Q 000342 148 LLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 148 ~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
++..+ +.|+++..-|.++|.+
T Consensus 151 ~l~~l----~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 151 VLRTL----GGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHh----hhHHHHHHHHHHHHHH
Confidence 88888 5699999999999997
No 169
>PRK14574 hmsH outer membrane protein; Provisional
Probab=49.39 E-value=68 Score=44.06 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
....-.|.-+...|++.+|.+++++|...-|+. +-+...+|.|..... .-+.|+..+++|..+.|+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---~~l~~~~A~v~~~Rg-----------~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---QNLRIALASIYLARD-----------LPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhhCCc
Confidence 334445666788999999999999999999998 666666666655443 336899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcccc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v 183 (1634)
.+..=...|.....+ ++|++|.... +.|--..|-||...++
T Consensus 483 ~~~~~~~~~~~al~l----~e~~~A~~~~-~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 483 SLILERAQAETAMAL----QEWHQMELLT-DDVISRSPEDIPSQEL 523 (822)
T ss_pred cHHHHHHHHHHHHhh----hhHHHHHHHH-HHHHhhCCCchhHHHH
Confidence 887777777777777 5889886544 4455556888855443
No 170
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=49.30 E-value=13 Score=33.15 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.8
Q ss_pred EecccchhccCChhHHHHhhhhhhcc
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQHMG 414 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~~ 414 (1634)
=.||.|+..+.....|..||+--|..
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred CCCCcchhhccchhhHHHHHHHHhcc
Confidence 47999999999999999999988865
No 171
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=49.26 E-value=14 Score=41.12 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=14.6
Q ss_pred cCccCCCCCCcccchHHHHHHHhh
Q 000342 1301 AGLKNEVGEYNCFLNVIIQSLWHL 1324 (1634)
Q Consensus 1301 ~GL~NlG~~NTCYLNSVLQ~L~hl 1324 (1634)
+|+.|.+ |||++||++|.+-..
T Consensus 34 t~~PN~~--dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNH--DNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SS--STHHHHHHHHHHHHH
T ss_pred ecCCCCC--CChHHHHHHHHHHHc
Confidence 4999999 799999999976443
No 172
>PRK11906 transcriptional regulator; Provisional
Probab=48.80 E-value=1.6e+02 Score=37.69 Aligned_cols=114 Identities=8% Similarity=-0.059 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHcCC---HHHHHHHHHHHH---HHccCchhhHHHHHhhchhhHHHhh-ccCChhHHHHHHHHHHHH
Q 000342 55 GAIKLECERALTALRRGN---HKKALRLMKELS---SRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIES 127 (1634)
Q Consensus 55 ~~ir~e~~~al~~~~~G~---h~kAL~~~~eL~---~~h~~S~~~a~~h~lqG~i~~~~a~-~~~~~~~k~~~L~~Al~~ 127 (1634)
+-|-...-+++..+.+|. ...|+.+..+.+ .-.|+- +.+|...+..|+..+- ...+ ...-...|+..
T Consensus 253 a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~ 326 (458)
T PRK11906 253 HYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSE---LELAAQKALEL 326 (458)
T ss_pred chhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 444445777888877776 556777788877 455666 7888888888777642 2222 23455789999
Q ss_pred HHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC
Q 000342 128 AKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1634)
Q Consensus 128 ~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa 179 (1634)
+.+|+++.|+.-..-..+|.++...+ .|+.|.....||+.+ +|..+.
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~----~~~~a~~~f~rA~~L-~Pn~A~ 373 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSG----QAKVSHILFEQAKIH-STDIAS 373 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhc----chhhHHHHHHHHhhc-CCccHH
Confidence 99999999999888888888887774 589999999999997 344433
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=48.28 E-value=84 Score=39.32 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhH------------HHhhccCC-----------
Q 000342 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCV------------KVASIIDD----------- 113 (1634)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~------------~~a~~~~~----------- 113 (1634)
.+.+.-+|--+.--|++++|...+-+.-.-.+.+ +-++.+.|.+.| +.|-.+++
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN---AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccch---hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 3444444433444477777777776666555555 555666665433 22322222
Q ss_pred ------------hhHHHHHHHHHHHHHHHHhhhCCChHHHHHH----HHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 114 ------------LNSKQRHLKNAIESAKKAAELSPHSVEFAHF----YANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 114 ------------~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~----~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
-.-|.=+++-|-+||++|..+.|+++.+-+. +|.+.+-++ .-++|+..|.+||.|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg----rl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG----RLREAISDCNEALKID 317 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC----CchhhhhhhhhhhhcC
Confidence 2223337788999999999999999966543 244555553 4588999999999984
No 174
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=46.86 E-value=1.3e+02 Score=34.02 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 76 AL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
|+.-.++-..-+|+- .-++.--|..+..+|.-+.+......|...|.+||.+|..+-|+.
T Consensus 54 AisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 54 AISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444455887 788889999999999877777767778899999999999999985
No 175
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=46.70 E-value=1.1e+02 Score=40.89 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHccC--chhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHH
Q 000342 73 HKKALRLMKELSSRHEN--SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1634)
Q Consensus 73 h~kAL~~~~eL~~~h~~--S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~ 150 (1634)
..+++.-|.+.+...++ +-..++.+++.|--+-.+|+..-...-+.+++.-+|+++.+|+...|+.- -+.||.-+-+
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence 34445444444442211 33458899999988888888877788888899999999999999999988 4555555555
Q ss_pred HHhccCccHHHHHHHHHHHhcccCCCCCCccccchhhhhhhhchHHHHHHHHHHHHHHHHhhcchhhhHHhhccC
Q 000342 151 EAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAHVQSELRSLIQKSNIASISTWMKNLG 225 (1634)
Q Consensus 151 ~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~~~~eL~~li~~a~~~~~~~~~~~~~ 225 (1634)
..- ..-+.|...|+|+|++..-.++..=-+ -+.|-.+++.+..++.--+ ..+-+|-.|.+
T Consensus 489 A~~---R~l~sAl~~~~eaL~l~~~~~~~~whL-----------LALvlSa~kr~~~Al~vvd-~al~E~~~N~~ 548 (799)
T KOG4162|consen 489 AEQ---RQLTSALDYAREALALNRGDSAKAWHL-----------LALVLSAQKRLKEALDVVD-AALEEFGDNHV 548 (799)
T ss_pred HHH---HhHHHHHHHHHHHHHhcCCccHHHHHH-----------HHHHHhhhhhhHHHHHHHH-HHHHHhhhhhh
Confidence 553 356889999999999843333322211 1333444444444333222 23456777766
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.46 E-value=70 Score=37.98 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
.-++..|++.+|+...+.++..||+|..++-+++..|.++.++ .+. ..|...|.+.....|++-
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~----g~~-------~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK----GDT-------AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc----CCH-------HHHHHHHHHHHHHCcCCH
Confidence 3456789999999999999999999988888888888888755 233 478889999999999986
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=44.46 E-value=1.8e+02 Score=25.69 Aligned_cols=52 Identities=31% Similarity=0.487 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCC
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DP 178 (1634)
..|+..+.++..+.|+....-..+|..++.. +.|++|..-+.+++.+. |.++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~-~~~~ 68 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELD-PDNA 68 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC-Ccch
Confidence 5789999999999999887777888888888 57899999899999873 4444
No 178
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=44.27 E-value=13 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=29.2
Q ss_pred eehHHHHHHhhhccCchhHHHHHHHHHHHHhcCceeEEecccchhccCChhHHHHhhhhhh
Q 000342 352 VKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 352 V~i~~L~~~~~~~~~~~~~~~ls~al~fak~n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
.+...|..|+...+-.... --+||.|+.++.+ .|..||...|
T Consensus 12 ~~~~~L~~H~~~~H~~~~~-----------------~v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 12 FSESSLVEHCEDEHRSESK-----------------NVVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred cCHHHHHHHHHhHCcCCCC-----------------CccCCCchhhhhh--HHHHHHHHhc
Confidence 3556788888766432111 1489999988764 8999998777
No 179
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=42.90 E-value=1.8e+02 Score=32.83 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000342 75 KALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1634)
Q Consensus 75 kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~ 154 (1634)
.|.+.++.-..+.|.+ +-.++-=|....++|.--..++.| .-+..|+.=|.+|..|.|+--+..-.++.++..+|.
T Consensus 9 ~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~-~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESK-KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6888888888899999 788888899989887532334444 466899999999999999999888888888888876
Q ss_pred cC-------ccHHHHHHHHHHHhcc
Q 000342 155 DG-------KEYEEVVQECERALAI 172 (1634)
Q Consensus 155 ~~-------~~Y~~a~~e~~RAL~I 172 (1634)
.. ..|++|..-..+|..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc
Confidence 42 2789998888888875
No 180
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.46 E-value=20 Score=39.49 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCceeEEecccchhccCC
Q 000342 371 DVLAEALAFAEENKTWRFWVCCRCNEKFAD 400 (1634)
Q Consensus 371 ~~ls~al~fak~n~sW~fWiCp~C~~kF~d 400 (1634)
..+..+|...+++. .|+||.||-.+-+
T Consensus 120 ~~~~~~Le~~~~~~---~~vC~vCGy~~~g 146 (166)
T COG1592 120 EMFRGLLERLEEGK---VWVCPVCGYTHEG 146 (166)
T ss_pred HHHHHHHHhhhcCC---EEEcCCCCCcccC
Confidence 57899999997777 9999999876554
No 181
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.83 E-value=50 Score=42.85 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000342 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1634)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l 152 (1634)
+++|+.--.....-.|++ |.+|---|-|+|++. -|.-|+++|.+|..+.||=.+--.-+|.+|=+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG-----------~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQG-----------LLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred chHHHHHHHHHHhcCCcc---hhhccceEEEEeccc-----------cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 445554444444445888 888877777887765 235677777777777777776666667666666
Q ss_pred hccCccHHHHHHHHHHHhcc
Q 000342 153 ANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 153 ~~~~~~Y~~a~~e~~RAL~I 172 (1634)
|...+|++=.+.||..
T Consensus 334 ----G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 334 ----GSVTEAVDCYNKALRL 349 (966)
T ss_pred ----cchHHHHHHHHHHHHh
Confidence 4556666666666665
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.15 E-value=2.2e+02 Score=39.54 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=71.4
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChh---------HHHHHHHHHHHHHHHHhhh
Q 000342 65 LTAL-RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLN---------SKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 65 l~~~-~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~---------~k~~~L~~Al~~~~~A~~L 134 (1634)
+... +.|+.++|++..++....+|++ ..+++..|.+++.... ..+.. .+..+ .+++.+......
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~~--~~ve~~~~~i~~ 111 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLKW--AIVEHICDKILL 111 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccch--hHHHHHHHHHHh
Confidence 4455 6788999999999999999999 8999999998876542 11111 00111 444555554555
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCC-ccccchhh
Q 000342 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA-KESLQDES 187 (1634)
Q Consensus 135 ~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa-~~~v~~~~ 187 (1634)
.|+.-.-...+|..+=.+ +.+++|.+...|+|.+. |.+|. .++++|-.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~----g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 112 YGENKLALRTLAEAYAKL----NENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred hhhhhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 554444333333333333 68899999999999987 66553 34444433
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.36 E-value=54 Score=30.53 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+.++..-|.+++.+. +-+.-..++..|++..+....-.|+-+.+-.-+|.++..+ +.|++|+.-..+|+.|
T Consensus 5 a~~~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELG----RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL----GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Confidence 566666777777654 2222233444555442222222222333344445555555 5899999989998876
No 184
>PHA00733 hypothetical protein
Probab=38.92 E-value=18 Score=38.31 Aligned_cols=25 Identities=32% Similarity=0.729 Sum_probs=23.4
Q ss_pred EecccchhccCChhHHHHhhhhhhc
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1634)
..|+.|++.|.....|..|++.+|.
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 4899999999999999999999995
No 185
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.09 E-value=2.9e+02 Score=36.49 Aligned_cols=74 Identities=26% Similarity=0.296 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHh---ccCccHHHHHHHHHHHhcccCCCCC-Cccccchhhhh--hhhchH
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAA---NDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQ--KILTAD 195 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~---~~~~~Y~~a~~e~~RAL~I~~P~DP-a~~~v~~~~~~--~~~~~~ 195 (1634)
.+|+.||.+|....|- +|.+...|| ++.|--.+|..-.+.||.+- |.-| |.-|+....+. +.+-.+
T Consensus 439 ~~A~q~y~rAI~~nPt-------~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHhcCcH-------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccchH
Confidence 5899999999998853 444444443 34556788888888889873 3333 22233322322 334444
Q ss_pred HHHHHHHH
Q 000342 196 ARIAHVQS 203 (1634)
Q Consensus 196 ~rv~~~~~ 203 (1634)
.|+.++-+
T Consensus 511 ~~~~kl~s 518 (966)
T KOG4626|consen 511 KRMKKLVS 518 (966)
T ss_pred HHHHHHHH
Confidence 55555443
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.14 E-value=1.9e+02 Score=34.93 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=68.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
-+++++.++..|++.+.---.+.|.+ --.+.+-|+.+|..- .| -.|.+||.+-..++|.--.+-..
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~---rAgLSlLgyCYY~~Q----------~f-~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRS---RAGLSLLGYCYYRLQ----------EF-ALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHhhChHHHHHHHH
Confidence 56788888999999888888888877 566788899988752 23 46889999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHH
Q 000342 145 YANLLYEAANDGKEYEEVVQEC 166 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~ 166 (1634)
+|.+||.++ -|-+|.+-.
T Consensus 84 ~AQSLY~A~----i~ADALrV~ 101 (459)
T KOG4340|consen 84 QAQSLYKAC----IYADALRVA 101 (459)
T ss_pred HHHHHHHhc----ccHHHHHHH
Confidence 999999994 566665544
No 187
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=35.98 E-value=25 Score=28.04 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.9
Q ss_pred EecccchhccCChhHHHHhhhhh
Q 000342 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1634)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~ 411 (1634)
|.|..|.+.|.+...+..|+..+
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred eEccccCCccCCHHHHHHHHChH
Confidence 34999999999999999999654
No 188
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.30 E-value=2.5e+02 Score=33.42 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=71.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-----------ccCChhHHHHH------H------HH
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-----------IIDDLNSKQRH------L------KN 123 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-----------~~~~~~~k~~~------L------~~ 123 (1634)
++-.|+-+-|..-.+.|-.+.|+| .+|-.+-|..+-+.+. .-+||..-..| + ..
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 333466666777777777777888 6666655554443321 11222211111 1 13
Q ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcc
Q 000342 124 AIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1634)
Q Consensus 124 Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~ 181 (1634)
|+..+..=...||+..+-=+-+|.+++.. ++|++|. -|..-+=..+|..|.-+
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~----~~f~kA~-fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSE----GDFEKAA-FCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhH----hHHHHHH-HHHHHHHHcCCCcHHHH
Confidence 55556666778999999999999999999 6899994 78888888889988876
No 189
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.97 E-value=2e+02 Score=33.82 Aligned_cols=102 Identities=27% Similarity=0.463 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHH--hcccCCCCCCccccchhhhh--h--
Q 000342 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERA--LAIENPIDPAKESLQDESQQ--K-- 190 (1634)
Q Consensus 117 k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RA--L~I~~P~DPa~~~v~~~~~~--~-- 190 (1634)
|..|+.-+.+--++|..|.||+|.--.|+...+.+. +.|.+|+....|| |+-..|.-|.+. ++-.+-. .
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s----~~~~eaI~~Lqra~sl~r~~~~~~~~d-i~~~L~~ak~~~ 130 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS----KGYDEAIKVLQRAYSLLREQPFTFGDD-IPKALRDAKKKR 130 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhCc
Confidence 344566677777899999999998888888888887 7899999999999 555666666555 3311111 0
Q ss_pred -hhchHHHHH---HHHHHHHHHHHhhcchhhhHHhhc
Q 000342 191 -ILTADARIA---HVQSELRSLIQKSNIASISTWMKN 223 (1634)
Q Consensus 191 -~~~~~~rv~---~~~~eL~~li~~a~~~~~~~~~~~ 223 (1634)
....+.||- .++.-|.++|+.-....++.|..|
T Consensus 131 w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N 167 (284)
T KOG4642|consen 131 WEVSEEKRIRQELELHSYLESLIEGDRERELSEWQEN 167 (284)
T ss_pred cchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHc
Confidence 112334432 255666777776544445567777
No 190
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=5.4e+02 Score=32.44 Aligned_cols=99 Identities=24% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcc----Cc---hhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 65 LTALRRGNHKKALRLMKELSSRHE----NS---AYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~----~S---~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
=.+|++|++..|..+=+..++--. .+ .-.+....+.- |.++|. --.|......|+.+-.++.++-|+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~--~lNlA~----c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC--HLNLAA----CYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH--hhHHHH----HHHhhhhHHHHHHHHHHHHhcCCC
Confidence 367999999999877544332221 11 00122222222 223321 134555557999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
.+.--..+++++..+ ++|+.|..-..+|+.+.
T Consensus 290 N~KALyRrG~A~l~~----~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 290 NVKALYRRGQALLAL----GEYDLARDDFQKALKLE 321 (397)
T ss_pred chhHHHHHHHHHHhh----ccHHHHHHHHHHHHHhC
Confidence 999999999999999 58999999999999973
No 191
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=1.6e+02 Score=37.77 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-ccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1634)
.|+.-.|..-.++.+.-||.- .-+ +|+..++. .-.++. -.-..|.+|..|.|+.-..-+-+|.+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~---~~l-----yI~~a~~y~d~~~~~-------~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF---NSL-----YIKRAAAYADENQSE-------KMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc---chH-----HHHHHHHHhhhhccH-------HHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 356666666666666666543 112 22222221 111221 23456889999999999999999999
Q ss_pred HHHHhccCccHHHHHHHHHHHhcc
Q 000342 149 LYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 149 L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+|.+ +.|++|..+...|+++
T Consensus 404 ~flL----~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 404 RFLL----QQYEEAIADFQKAISL 423 (606)
T ss_pred HHHH----HHHHHHHHHHHHHhhc
Confidence 9999 6899999999999997
No 192
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=32.49 E-value=15 Score=35.84 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=0.0
Q ss_pred cccchhccCChhHHHHhhhhhhccC
Q 000342 391 CCRCNEKFADSESHMHHVVQQHMGN 415 (1634)
Q Consensus 391 Cp~C~~kF~d~~~~~~Hl~~~H~~~ 415 (1634)
|..|+..|.+...+..||...|.-.
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~ 26 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFD 26 (100)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 8999999999999999999999654
No 193
>PF12907 zf-met2: Zinc-binding
Probab=32.27 E-value=13 Score=31.65 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=21.6
Q ss_pred ecccchhccCChh---HHHHhhhhhhccC
Q 000342 390 VCCRCNEKFADSE---SHMHHVVQQHMGN 415 (1634)
Q Consensus 390 iCp~C~~kF~d~~---~~~~Hl~~~H~~~ 415 (1634)
+|.+|-+.|.-+. .|..|.+++|...
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 7999998777664 5999999999863
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=32.24 E-value=1.9e+02 Score=39.99 Aligned_cols=102 Identities=25% Similarity=0.238 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
+..--.|.+.+++.++.+||+.-|+...-.|+. ..+|..-|-....+.. + +..|-+.|-.|+.|.||
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl~q---~-------le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSLGQ---D-------LEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhccC---C-------HHHHHHHHHHHHhcChh
Confidence 334456778889999999999999999888988 6777777765554421 1 45888999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhccc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~ 173 (1634)
.+--.-.++. ||+.-++.-.|.++-.-|.|++-+-
T Consensus 70 nlLAWkGL~n-Lye~~~dIl~ld~~~~~yq~~~l~l 104 (1238)
T KOG1127|consen 70 NLLAWKGLGN-LYERYNDILDLDRAAKCYQRAVLIL 104 (1238)
T ss_pred hhHHHHHHHH-HHHccchhhhhhHhHHHHHHHHHhh
Confidence 9977766664 4444455557888888888888763
No 195
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.09 E-value=1.8e+02 Score=38.29 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=71.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000342 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1634)
.-+++.|..++||..+++.+--.|.+ ++.-+-.|.+.+.+.+ | .-|+..+-+-+.++|+-....++
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~il~~~~~----------~-~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRASILFSLGR----------Y-VEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHHHHHhhcc----------h-HHHHHHHHHHHHhCcchHHHHHH
Confidence 44567788888888888777666777 6766777777776642 1 56888888888899999888889
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCcccc
Q 000342 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1634)
Q Consensus 145 ~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v 183 (1634)
+++..-.+ +.+..|..+.--|+- .||-..++
T Consensus 597 lgki~k~~----~~~~~Al~~f~~A~~----ldpkg~~i 627 (638)
T KOG1126|consen 597 LGKIYKRL----GNTDLALLHFSWALD----LDPKGAQI 627 (638)
T ss_pred HHHHHHHH----ccchHHHHhhHHHhc----CCCccchh
Confidence 99888888 456788877755555 46666554
No 196
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=31.28 E-value=4.8e+02 Score=33.60 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHH----------HHHHHHhhhCC
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAI----------ESAKKAAELSP 136 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al----------~~~~~A~~L~P 136 (1634)
++..++..+|+++.+...+..|++ +++-...|.+.++... +..-.+.|++.+ +.+.+|...-=
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~all~~g~----~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNS---PLLQLNLAQALLKGGK----PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCC----hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 456688999999999999999999 7888888888887642 221222222221 34444444444
Q ss_pred ChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 137 ~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
|..+--..+|..+|-. +.|++|..-+.||..-
T Consensus 423 ~~~~a~~A~AE~~~~~----G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAEGYALA----GRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence 5555455666666666 4788888888888775
No 197
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=31.10 E-value=2.2e+02 Score=34.36 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000342 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1634)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1634)
.|.-+++-|+.+-|-+.++.+..--..+ .+.+..++.|.+..+. +. +..|.-.|.+-...+|.++.+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv~l~~g~--e~-------~~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWVNLATGG--EK-------YQDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHTT--TC-------CCHHHHHHHHHHCCS--SHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHhCc--hh-------HHHHHHHHHHHHhccCCCHHHH
Confidence 3344555556666655555544333333 4555555554444332 22 2467778888888899999998
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 143 ~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
...|.+...+ +.|++|+.-...||..
T Consensus 205 ng~A~~~l~~----~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 205 NGLAVCHLQL----GHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHC----T-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHHHh
Confidence 8888888888 6899999999999874
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=63 Score=37.77 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 118 QRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 118 ~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
-+++..|++||++|.-+.|+-+.+..=.|.-.+.+ +.++.+...|+|||.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQL 73 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhc
Confidence 34668899999999999999999999999888887 6789999999999997
No 199
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=28.84 E-value=52 Score=39.95 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=49.2
Q ss_pred HHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 97 HRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 97 h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.--+|.-|+++. -..-|++||+++.-+.|..-++-+-+|.+++.+ +.|-.|+..|..|+++
T Consensus 100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHh
Confidence 345666677664 236899999999999997777778889999988 6778888889999885
No 200
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=28.24 E-value=26 Score=37.84 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=10.8
Q ss_pred EEecccchhccC
Q 000342 388 FWVCCRCNEKFA 399 (1634)
Q Consensus 388 fWiCp~C~~kF~ 399 (1634)
||.||.|++.|=
T Consensus 124 f~~C~~C~kiyW 135 (147)
T PF01927_consen 124 FWRCPGCGKIYW 135 (147)
T ss_pred EEECCCCCCEec
Confidence 999999999873
No 201
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=27.61 E-value=90 Score=24.28 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
|.++...|.+++.+.. ...|+.+|.+|..+.|+.
T Consensus 1 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD-----------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHCcCC
Confidence 3456677777776642 358999999999999973
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=26.99 E-value=2.6e+02 Score=33.74 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000342 55 GAIKLECERALTALRRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAE 133 (1634)
Q Consensus 55 ~~ir~e~~~al~~~~~G-~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~ 133 (1634)
+.|-.=|+.-+.+..-| +..+|.-.-+||+.++|.+ +.+++.++..+..+. ++..|...+.+|..
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~-----------~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLG-----------HYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT------------HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHH
Confidence 44555455445555544 3889999999999999888 888888887777664 44678888899999
Q ss_pred hCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccc
Q 000342 134 LSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1634)
Q Consensus 134 L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~ 182 (1634)
..|+..+.-+=.+-+-..+|+ -.++..+..--|.-.+|..|...+
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk----~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGK----PTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-----TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred hccCCHHHHHHHHHHHHHhCC----ChhHHHHHHHHHHHhCCCChHHHH
Confidence 999987654444433333432 223334444445555666555443
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.62 E-value=2.8e+02 Score=35.01 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000342 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1634)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1634)
.|+...|+...++|..++|.- +.+ -+.++.. .+.. ..|+..+.++....|++.++-..-|+-|
T Consensus 182 t~~~~~ai~lle~L~~~~pev---~~~---LA~v~l~-----~~~E------~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---AVL---LARVYLL-----MNEE------VEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---HHH---HHHHHHh-----cCcH------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356899999999999999864 211 1222221 1222 3678888888899999988888888888
Q ss_pred HHHhccCccHHHHHHHHHHHhcc
Q 000342 150 YEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 150 ~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+.. +.|+.|..-+++|..+
T Consensus 245 l~k----~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 245 LSK----KKYELALEIAKKAVEL 263 (395)
T ss_pred Hhc----CCHHHHHHHHHHHHHh
Confidence 777 6899999999999997
No 204
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=26.52 E-value=18 Score=31.98 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=4.3
Q ss_pred eeEEecccchh
Q 000342 386 WRFWVCCRCNE 396 (1634)
Q Consensus 386 W~fWiCp~C~~ 396 (1634)
...|.||.|++
T Consensus 39 ~~~W~CPiC~~ 49 (50)
T PF02891_consen 39 TPKWKCPICNK 49 (50)
T ss_dssp S---B-TTT--
T ss_pred cCCeECcCCcC
Confidence 34499999975
No 205
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=26.35 E-value=2.6e+02 Score=36.59 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000342 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1634)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1634)
=-|.-..+.|++.+||+-+++-+..-|.. .-++.+-|.|+-++.. +..|.+++..|..|.+..==|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~-----------~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD-----------LKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhCChhhHHH
Confidence 34566778999999999999999666888 8899999999988762 368889999999999888888
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHH
Q 000342 142 AHFYANLLYEAANDGKEYEEVVQEC 166 (1634)
Q Consensus 142 a~~~A~~L~~l~~~~~~Y~~a~~e~ 166 (1634)
..-+|.-++.. +.+++|+.-+
T Consensus 265 NsK~aKy~LRa----~~~e~A~~~~ 285 (517)
T PF12569_consen 265 NSKCAKYLLRA----GRIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHC----CCHHHHHHHH
Confidence 88899988888 5778887665
No 206
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=2.4e+02 Score=35.46 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=58.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000342 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1634)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1634)
++.+-++..||-.+++-+...|++ --++.+-|.+..++.+- ..|+=+|+.|..|+|--+++-..+-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~-----------~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERH-----------TQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccch-----------HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444455556666666666555666 45555566655554321 4678889999999999999888888
Q ss_pred HHHHHHhccCccHHHHHHHHHHHhc
Q 000342 147 NLLYEAANDGKEYEEVVQECERALA 171 (1634)
Q Consensus 147 ~~L~~l~~~~~~Y~~a~~e~~RAL~ 171 (1634)
+.+..- +..++|..-+..++.
T Consensus 376 hsYLA~----~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 376 HSYLAQ----KRFKEANALANWTIR 396 (564)
T ss_pred HHHHhh----chHHHHHHHHHHHHH
Confidence 877776 467888766555443
No 207
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.20 E-value=18 Score=44.06 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=35.4
Q ss_pred HHHHHhccCCHHHHhceeEeehHHHHHHhhh-----ccCchhHHHHH-------HHHHHHHhcCceeEEecc
Q 000342 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSAS-----LKDGLASDVLA-------EALAFAEENKTWRFWVCC 392 (1634)
Q Consensus 333 ~vr~yW~~m~~e~kr~fL~V~i~~L~~~~~~-----~~~~~~~~~ls-------~al~fak~n~sW~fWiCp 392 (1634)
-+.+||-+|..|.....++-.+....+-|-. .....+..+|+ +|--|| +||||-
T Consensus 81 ~~~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~a------KYWIC~ 146 (353)
T PF15297_consen 81 PVGSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLA------KYWICL 146 (353)
T ss_pred CccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHH------HHHHHH
Confidence 3468999999987666666666544443322 22245666777 677777 499995
No 208
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=25.97 E-value=4.8e+02 Score=34.11 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc----cC-chhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 65 LTALRRGNHKKALRLMKELSSRH----EN-SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h----~~-S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
.-+..-|++.+|..+-++..+.. |. +..|+.+|+--|..++... .-+--..|+.+|++.+.+ .+-.+.-
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G----Kf~EA~~~~e~Al~I~~~--~~~~~~~ 322 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG----KFAEAEEYCERALEIYEK--LLGASHP 322 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC----ChHHHHHHHHHHHHHHHH--hhccChH
Confidence 33445567777766666643222 11 2223555554455554432 112225688999999999 4444555
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccC-CCCCCccccc--hhhhhhhhchHHHHHHHHHHHHHHHHhhc
Q 000342 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIEN-PIDPAKESLQ--DESQQKILTADARIAHVQSELRSLIQKSN 213 (1634)
Q Consensus 140 ~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~-P~DPa~~~v~--~~~~~~~~~~~~rv~~~~~eL~~li~~a~ 213 (1634)
+.+..+-.+-...-. .+.|++|+.-.++||.|-. -..++.-+++ +..-....-...|...+.+=++.+|++.+
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 555444333222221 3589999999999999954 2222221232 12212334445566666666666666643
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=25.81 E-value=3.2e+02 Score=28.66 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000342 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1634)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1634)
.+.-+.-+-.+-.-|++++|+..+++....||+......+....+...+.+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445556677789999999999999999998421144444444444443
No 210
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=3.4e+02 Score=35.52 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
.++=.+|+..|+ +||.++++.-.. +.+=......-||++.++- -...|+.+|++|.+|.|.
T Consensus 427 ~~~y~~A~~~f~-----~~l~~ik~~~~e---~~~w~p~~~NLGH~~Rkl~-----------~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 427 YEEYPEALKYFQ-----KALEVIKSVLNE---KIFWEPTLNNLGHAYRKLN-----------KYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HhhhHHHHHHHH-----HHHHHhhhcccc---ccchhHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHcCCC
Confidence 555666677766 677666665522 2211233455588877663 347899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 138 sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
+..+=+..|-....++ -.++|..-...||+|
T Consensus 488 ~~~~~asig~iy~llg----nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLG----NLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHHHHHHHHhc----ChHHHHHHHHHHHhc
Confidence 9999888888888885 458899999999998
No 211
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.20 E-value=3.8e+02 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 123 ~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
..+..+.+++...|+.++....+|..++.. +.|++|....-..+..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~----g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAA----GDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 457788889999999999999999998888 6899999988777765
No 212
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.53 E-value=3.1e+02 Score=35.57 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000342 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1634)
Q Consensus 55 ~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1634)
..-+.-|.+|+-+.+-|+...||+=++.-+.-+|+= .-+..-+|.+++.+ ..| ..|+++|.+|..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~RKg~al~~m----------k~y-dkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYLRKGAALRAM----------KEY-DKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHhc
Confidence 345678899999999999999999999999999876 55566667776654 223 5789999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 000342 135 SPHSVEFAHFYANLLY 150 (1634)
Q Consensus 135 ~P~sl~ia~~~A~~L~ 150 (1634)
.|++-++.-.+-+.+-
T Consensus 456 dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVE 471 (539)
T ss_pred CchhHHHHHHHHHHHH
Confidence 9999887766554443
No 213
>PHA00732 hypothetical protein
Probab=24.39 E-value=43 Score=32.58 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred ecccchhccCChhHHHHhhhhhhc
Q 000342 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1634)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1634)
.|+.|++.|....++..|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999976564
No 214
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=23.74 E-value=50 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=20.9
Q ss_pred CceeEEecccchhccCC----hhHHHHhhhhhhc
Q 000342 384 KTWRFWVCCRCNEKFAD----SESHMHHVVQQHM 413 (1634)
Q Consensus 384 ~sW~fWiCp~C~~kF~d----~~~~~~Hl~~~H~ 413 (1634)
+...+..|.+|++.|.. +..|+.||...|.
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHHHTTH
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhCc
Confidence 34567899999886654 7899999988774
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.50 E-value=1.1e+02 Score=23.58 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.9
Q ss_pred HHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000342 95 LIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1634)
Q Consensus 95 ~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1634)
-+++..|.+++.... ...|+.+|.+|..+.|+.
T Consensus 2 ~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-----------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCcCC
Confidence 456777777776642 368999999999999973
No 216
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=23.44 E-value=8.2e+02 Score=30.30 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000342 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1634)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1634)
-=.||=|.....+.++++|+...++-....|++ .++-..-|.|+.... ....||+.+.+..+-.|+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g-----------~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKC---VRASIILGRVELAKG-----------DYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhcc-----------chHHHHHHHHHHHHhChH
Confidence 346888888999999999999999999999999 889999999988664 235889999999998887
Q ss_pred hH-HHHHHHHHHHHHHhccCccHHHHHHHHHHHhcccCCCCCCccccchhh
Q 000342 138 SV-EFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDES 187 (1634)
Q Consensus 138 sl-~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I~~P~DPa~~~v~~~~ 187 (1634)
=| ++.-.+...+-.++ .-++...-..|+... -.+++...+.++.
T Consensus 247 yl~evl~~L~~~Y~~lg----~~~~~~~fL~~~~~~--~~g~~~~l~l~~l 291 (389)
T COG2956 247 YLSEVLEMLYECYAQLG----KPAEGLNFLRRAMET--NTGADAELMLADL 291 (389)
T ss_pred HHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHc--cCCccHHHHHHHH
Confidence 66 55555555555553 334444445555443 2344444444333
No 217
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=23.07 E-value=87 Score=34.44 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=24.6
Q ss_pred EEEEEEEeCceEEEEEEeCCCCcEEEEcCCc
Q 000342 1574 LVSVVCYYGQHYHCFAYSHDQERWIMYDDKT 1604 (1634)
Q Consensus 1574 L~AVV~H~GGHYtAyVR~~~~~kW~~FDDs~ 1604 (1634)
..|+||+.+.|.+|..| -+|.||.+|-..
T Consensus 99 ~~gfI~N~~~HWf~iRk--i~~~wyNLDS~l 127 (157)
T PF02099_consen 99 EFGFICNLSRHWFAIRK--IGGQWYNLDSKL 127 (157)
T ss_dssp SSEEEEECTTEEEEEEE--ETTEEEEECTTT
T ss_pred ceEEEeccCcceEEEEe--eCCeeEeccCCC
Confidence 35779999899999999 789999999543
No 218
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.86 E-value=95 Score=41.16 Aligned_cols=80 Identities=28% Similarity=0.273 Sum_probs=61.5
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH--hhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000342 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV--ASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1634)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~--a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1634)
+.|+++|||..+-.|....|. +++-+.++.|.|+.+. ++...|+. ++.-|..-|++|-+..|+-- .-.-+|
T Consensus 255 r~GDRakAL~~~l~lve~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~----s~~~a~~WyrkaFeveP~~~-sGIN~a 327 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGP--VAPDMYCLCGRIYKDMFIASNYTDAE----SLNHAIEWYRKAFEVEPLEY-SGINLA 327 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCC--CCCceeeeechhhhhhhhccCCcchh----hHHHHHHHHHHHhccCchhh-ccccHH
Confidence 458899999999999987753 3488999999999985 55555554 88899999999999998642 233456
Q ss_pred HHHHHHhcc
Q 000342 147 NLLYEAAND 155 (1634)
Q Consensus 147 ~~L~~l~~~ 155 (1634)
.+|...|.+
T Consensus 328 tLL~aaG~~ 336 (1226)
T KOG4279|consen 328 TLLRAAGEH 336 (1226)
T ss_pred HHHHHhhhh
Confidence 777777644
No 219
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=22.79 E-value=1.2e+02 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHh
Q 000342 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1634)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a 108 (1634)
|.-+++.|++.+|+...+. ....|.. +..+.+-|..++++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLG 72 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhC
Confidence 6788999999999999988 4444555 677777799999875
No 220
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.48 E-value=5.5e+02 Score=30.76 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCch-h-----------------------hHHHHHhhchhhHHHhhcc
Q 000342 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSA-Y-----------------------VALIHRVQGTVCVKVASII 111 (1634)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~-~-----------------------~a~~h~lqG~i~~~~a~~~ 111 (1634)
..+-..+.|.-++.+|++.+|+..+++++....... . ...-....+.+++.+|.=.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999997331110 0 0011122234444433210
Q ss_pred CCh--hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000342 112 DDL--NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1634)
Q Consensus 112 ~~~--~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~ 154 (1634)
+.. .....-...++..|..|+.+.|+.-..-+.+|.....+-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 000 0112233568999999999999999877777777766643
No 221
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=22.12 E-value=2.1e+02 Score=34.32 Aligned_cols=65 Identities=26% Similarity=0.205 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccC---------ChhHH--HHHHHHHHHHHHHHhhhCCChHHHHH
Q 000342 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIID---------DLNSK--QRHLKNAIESAKKAAELSPHSVEFAH 143 (1634)
Q Consensus 76 AL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~---------~~~~k--~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1634)
-++.++.-++..|.| ..+|.+.|..+++.|-.+. +..-. ..++..|+..+.+|..|+|.++--+.
T Consensus 62 ~~~~LkaWv~a~P~S---y~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~ 137 (277)
T PF13226_consen 62 RLAVLKAWVAACPKS---YHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAI 137 (277)
T ss_pred HHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 466689999999999 9999999999999873111 11111 23667899999999999999985443
No 222
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.07 E-value=3.4e+02 Score=35.46 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000342 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1634)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1634)
--++.+.++++|+--+|.-..+--+...|.- +-+-..-|.++.+.-.. ..|+.++.++..|.|+.+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~h---aeAW~~LG~~qaENE~E-----------~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQH---AEAWQKLGITQAENENE-----------QNAISALRRCLELDPTNL 353 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHH---HHHHHHhhhHhhhccch-----------HHHHHHHHHHHhcCCccH
Confidence 3456789999999889987777788888999 77888899999876322 589999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000342 140 EFAHFYANLLYEAA 153 (1634)
Q Consensus 140 ~ia~~~A~~L~~l~ 153 (1634)
+--..+|-....-+
T Consensus 354 eaLmaLAVSytNeg 367 (579)
T KOG1125|consen 354 EALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHHHhhhh
Confidence 98888887777664
No 223
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=21.65 E-value=1.6e+03 Score=31.88 Aligned_cols=47 Identities=32% Similarity=0.296 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcc
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RAL~I 172 (1634)
.+|-.||.+|-+|.|.-.+-|+..|....+. ..++.|..-|-|+=.+
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~----~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEE----STWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhcc----ccHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999888 5788888776555443
No 224
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.79 E-value=2.5e+02 Score=36.83 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHH
Q 000342 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQEC 166 (1634)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~l~~~~~~Y~~a~~e~ 166 (1634)
..|+.++. .+.+....+-++.|..||.+ +.|++|+.-+
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl----~~ydealdiY 133 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRL----ERYDEALDIY 133 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 45677776 67777788999999999999 6899998655
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.42 E-value=4.8e+02 Score=30.07 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=52.6
Q ss_pred hhchhhHHHh---hccCChhHHHHHHHHHHHHHHHHhhhCCCh------HHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Q 000342 99 VQGTVCVKVA---SIIDDLNSKQRHLKNAIESAKKAAELSPHS------VEFAHFYANLLYEAANDGKEYEEVVQECERA 169 (1634)
Q Consensus 99 lqG~i~~~~a---~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s------l~ia~~~A~~L~~l~~~~~~Y~~a~~e~~RA 169 (1634)
..|.++.++| +...+.+.-..||..|++.|.+|..-...- ..+..+.|.+-..+ |.|++|.+-..|.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl----g~~~eA~~~fs~v 191 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL----GNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh----CCHHHHHHHHHHH
Confidence 6778888876 677777778899999999999999776542 24444555555555 6899998888887
Q ss_pred hcc
Q 000342 170 LAI 172 (1634)
Q Consensus 170 L~I 172 (1634)
++-
T Consensus 192 i~~ 194 (214)
T PF09986_consen 192 IGS 194 (214)
T ss_pred HcC
Confidence 775
Done!