BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000343
(1630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 97.1 bits (240), Expect = 8e-20, Method: Composition-based stats.
Identities = 103/364 (28%), Positives = 150/364 (41%), Gaps = 42/364 (11%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
D QT LH A R G +V+ +LE + N ++ G PL A G E V AL+++ A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLE-NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
+ ++GF P HV A +G+ LL A PNA G + LH AV D
Sbjct: 138 SQACMTKKGFTP--LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 630 IVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEV---ASPEEI--VNVIDIPG 684
++L GG N TPLH+ V V + ++ A+ E + V + +
Sbjct: 196 KLLLPRGGSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 685 PVGTALCMAAALKKDHE-----VEGRELVRILLTAGAEPTAQ---------DAQNR---T 727
G A +A L K G + ++ G P A DA R T
Sbjct: 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313
Query: 728 ALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQ 787
LH+AS +++LVK +L DVN + PLH A +G V LLL GA N
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 788 DDEGDNAFHIA--------ADAAKMIRENLEWLIV----MLSHP---DAAVEVRNHSGKT 832
+G IA D K++ + +++V +S P D ++V G+
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEE 433
Query: 833 LRDF 836
L F
Sbjct: 434 LISF 437
Score = 90.5 bits (223), Expect = 7e-18, Method: Composition-based stats.
Identities = 77/287 (26%), Positives = 122/287 (42%), Gaps = 16/287 (5%)
Query: 513 TALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVI 572
T LH+A G +V+ +L+ + +V + + PL A AG E L++ A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 573 SRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
++ ++ P H A G + ++ LL A+PN G + LH A + + + + +
Sbjct: 75 AKAKDDQTP--LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 633 LENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCM 692
LE S A + K TPLH+ V V + +E + P G
Sbjct: 133 LEKEA--SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---------PNAAGKNGLT 181
Query: 693 AAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVN 752
+ H ++V++LL G P + T LHIA+ N VE+ + +L G N
Sbjct: 182 PLHVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 753 IRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAA 799
+V PLH+A G V LLLS A+ N + G H+ A
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G T LHLA + G AE+V A+L Q N ++ +K G PL G LIK
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
G V + R G+ P HV +++G ++ LL AD NA G S LH+A + +T
Sbjct: 300 HGVMVDATTRMGYTP--LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 627 DCAIVILENGGCRSMAILNSKELTPL 652
D ++L+NG S ++S TPL
Sbjct: 358 DIVTLLLKNGA--SPNEVSSDGTTPL 381
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 649 LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELV 708
LTPLH+ ++ +VK ++ + + NV V T L MAA + H E+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNV-----KVETPLHMAA--RAGHT----EVA 63
Query: 709 RILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALAR 768
+ LL A+ A+ ++T LH A+ +VK++L+ + N+ PLH+A
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 769 GAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAA 822
G V LL A +G H+AA K+ E L+ +HP+AA
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV--RVAELLLERDAHPNAA 175
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 26/237 (10%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIK------RGANVISRLREGFGPSVAHVCAYHGQPDC 595
D+DGD PL A+ G+ VH L+ R ++ + LR+ + H+ P
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ----TPLHLAVITTLPSV 61
Query: 596 MRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENG--GCRSMAILNSKELTPLH 653
+R L+ AGA P A+D G++ H A + C +L++ G + N LT LH
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 654 LCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL--VRIL 711
+ V T V+ +E + + V++ P+ H VE L V++L
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPL------------IHAVENNSLSMVQLL 169
Query: 712 LTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALAR 768
L GA AQ +ALH AS + LV+ ++ +G D +++N HN PL VA +R
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 20/198 (10%)
Query: 610 DDEGESVLHRAVAKKYTDCA--IVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRW 667
D++G++ LH AV + +V L G R + I N+ TPLHL V T +VV+
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 668 VEV-ASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPT----AQD 722
V ASP +D G AA L +H +R LL + A T A++
Sbjct: 66 VTAGASPM----ALDRHGQT------AAHLACEHR--SPTCLRALLDSAAPGTLDLEARN 113
Query: 723 AQNRTALHIASMANDVELVKIILDAGVDVNIRNVHN-TIPLHVALARGAKSCVGLLLSAG 781
TALH+A E V+++L+ G D++ ++ + PL A+ + S V LLL G
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
Query: 782 ADCNWQDDEGDNAFHIAA 799
A+ N Q G +A H A+
Sbjct: 174 ANVNAQMYSGSSALHSAS 191
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLD-KDGDPPLVFALAAGSPECVHALI 565
+N DG TALH+A E V+ +LE + +D +D K G PL+ A+ S V L+
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKY 625
+ GANV +++ G S H + G +R L+ +GAD + + ++ L A +++
Sbjct: 171 QHGANVNAQMYS--GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228
Query: 626 TD 627
D
Sbjct: 229 ID 230
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQE---NVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
GQTA HLAC S + A+L+ + +++ + DG L A+ E V L++R
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Query: 568 GANVIS-RLREGFGPSVAHVCAYHGQPDCMRELLLA-GADPNAVDDEGESVLHRAVAKKY 625
GA++ + ++ G P + A M +LLL GA+ NA G S LH A +
Sbjct: 139 GADIDAVDIKSGRSPLIH---AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195
Query: 626 TDCAIVILENGGCRSMAILNSKELTPL 652
++ +G S+ N TPL
Sbjct: 196 LPLVRTLVRSGADSSLK--NCHNDTPL 220
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 719 TAQDAQNRTALHIASMANDV----ELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCV 774
T D T LHIA + ++ LV + G +++I N PLH+A+ S V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 775 GLLLSAGADCNWQDDEGDNAFHIAAD 800
LL++AGA D G A H+A +
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACE 88
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 60/94 (63%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V++LL AGA+ A+D RT LH+A+ +E+VK++L+AG DVN ++ + PLH+A
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAA 799
G V LLL AGAD N +D G H+AA
Sbjct: 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 650 TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVR 709
TPLHL ++ VVK +E + VN D G T L +AA + H E+V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGR--TPLHLAA--RNGH----LEVVK 52
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
+LL AGA+ A+D RT LH+A+ +E+VK++L+AG DVN ++ + PLH+A G
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 770 AKSCVGLLLSAGA 782
V LLL AGA
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
+G+T LHLA R G E+V+ +LE + +V+ DK+G PL A G E V L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
+V ++ + G P H+ A +G + ++ LL AGAD NA D G + LH A + +
Sbjct: 60 DVNAKDKNGRTP--LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 630 IVILENGG 637
++LE G
Sbjct: 118 KLLLEAGA 125
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RT LH+A+ +E+VK++L+AG DVN ++ + PLH+A G V LLL AGAD N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT 832
+D G H+AA R ++ +L A V ++ +G+T
Sbjct: 63 AKDKNGRTPLHLAA------RNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 52/172 (30%)
Query: 580 GPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCR 639
G + H+ A +G + ++ LL AGAD NA D G + LH A + + ++LE G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--- 58
Query: 640 SMAILNSKE---LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAAL 696
A +N+K+ TPLHL ++ VVK
Sbjct: 59 --ADVNAKDKNGRTPLHLAARNGHLEVVK------------------------------- 85
Query: 697 KKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAG 748
+LL AGA+ A+D RT LH+A+ +E+VK++L+AG
Sbjct: 86 -------------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G+T LHLA R G E+V+ +LE + +V+ DK+G PL A G E V L++
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGA 604
GA+V ++ + G P H+ A +G + ++ LL AGA
Sbjct: 90 AGADVNAKDKNGRTP--LHLAARNGHLEVVKLLLEAGA 125
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D Q T LH+A+ E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN R+ PLH+A G V +LL GAD N QD G H+AAD
Sbjct: 68 KHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD----- 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
R +LE + V+L H A V ++ GKT D
Sbjct: 123 RGHLEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A+D T LH+A+ +E+V+++L G DVN ++ + PLH+A
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
RG V +LL GAD N QD G AF I+ D
Sbjct: 121 ADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G PE V L+K GA+V +R +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G+ P H+ A +G + + LL GAD NA D G + LH A + + + V+L++G
Sbjct: 80 GWTP--LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L++ + V+ D DG PL A G E V L+K GA+
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V ++ +G + H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 V--NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 52/193 (26%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA DD+G + LH A + + V+L++G A +N++
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-----ADVNAR 76
Query: 648 EL---TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+ TPLHL ++
Sbjct: 77 DTDGWTPLHLAADNGHL------------------------------------------- 93
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
E+V +LL GA+ AQDA T LH+A+ +E+V+++L G DVN ++ +
Sbjct: 94 -EIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 765 ALARGAKSCVGLL 777
++ G + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + +G P H+ A+ G P+ + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTP--LHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVK 665
D +G + LH A + + V+L+ G A +N+++ LTPLHL
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYG-----ADVNAQDAYGLTPLHL----------- 119
Query: 666 RWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN 725
A + H E+V +LL GA+ AQD
Sbjct: 120 -----------------------------AADRGH----LEIVEVLLKHGADVNAQDKFG 146
Query: 726 RTALHIASMANDVELVKII 744
+TA I+ + +L +I+
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA G E+VE +L+Y + V+ D G PL A G E V L+K
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPD 594
GA+V ++ FG + + +G D
Sbjct: 135 HGADV--NAQDKFGKTAFDISIDNGNED 160
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 2 LGKKLLEAARAGQDDEV------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
AG DVN ++ PLH+A G V +LL AGAD N +D +G H+AA
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA------ 109
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPREWISEDLMEA 852
RE ++ +L A V ++ GKT D E I+E L +A
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA R G E+VE +L+ + +V+ DKDG PL A G E V L+K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA+V ++ ++G+ P H+ A G + + LL AGAD NA D G++ A+
Sbjct: 90 AGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
Query: 627 DCAIVI 632
D A V+
Sbjct: 148 DIAEVL 153
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ DKDG PL A G E V L+K GA+V ++ ++
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G+ P H+ A G + + LL AGAD NA D +G + LH A + + + V+L+ G
Sbjct: 68 GYTP--LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 54/203 (26%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V ++ ++G+ P H+ A G + + LL AGAD NA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNA 63
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVK 665
D +G + LH A + + + V+L+ G A +N+K+ TPLHL
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAG-----ADVNAKDKDGYTPLHL----------- 107
Query: 666 RWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN 725
A ++ H E+V +LL AGA+ AQD
Sbjct: 108 -----------------------------AAREGH----LEIVEVLLKAGADVNAQDKFG 134
Query: 726 RTALHIASMANDVELVKIILDAG 748
+T +A + ++ +++ A
Sbjct: 135 KTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 82.0 bits (201), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 2 LGKKLLEAARAGQDDEV------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
AG DVN ++ PLH+A G V +LL AGAD N +D +G H+AA
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA------ 109
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPREWISEDLMEA 852
RE ++ +L A V ++ GKT D E I+E L +A
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 78.2 bits (191), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA R G E+VE +L+ + +V+ DKDG PL A G E V L+K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA+V ++ ++G+ P H+ A G + + LL AGAD NA D G++ A+ + +
Sbjct: 90 AGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 627 DCAIVI 632
D A V+
Sbjct: 148 DIAEVL 153
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ DKDG PL A G E V L+K GA+V ++ ++
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G+ P H+ A G + + LL AGAD NA D +G + LH A + + + V+L+ G
Sbjct: 68 GYTP--LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 54/203 (26%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V ++ ++G+ P H+ A G + + LL AGAD NA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNA 63
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVK 665
D +G + LH A + + + V+L+ G A +N+K+ TPLHL
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAG-----ADVNAKDKDGYTPLHL----------- 107
Query: 666 RWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN 725
A ++ H E+V +LL AGA+ AQD
Sbjct: 108 -----------------------------AAREGH----LEIVEVLLKAGADVNAQDKFG 134
Query: 726 RTALHIASMANDVELVKIILDAG 748
+T +A ++ +++ A
Sbjct: 135 KTPFDLAIREGHEDIAEVLQKAA 157
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 80.9 bits (198), Expect = 5e-15, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + + PLH+A RG V +LL GAD N D G H+AAD
Sbjct: 68 KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 70.5 bits (171), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN + + PLH+A
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 ADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA R G E+VE +L+ + +V+ LD G PL A G E V L+K GA+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V + G + H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 V--NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G++ LH A + + V+L+NG + L+
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA--DVNALDFS 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
TPLHL A K+ H E+
Sbjct: 80 GSTPLHL----------------------------------------AAKRGH----LEI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A+ +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D GD PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H+ A G + + LL GAD NA D G + LH A + + V+L+ G
Sbjct: 80 GSTP--LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + +G + H+ A G + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKEL---TPLHLCVATWNVAVVK 665
+D G + LH A + + + V+L+ G A +N+ + TPLHL T ++ +V+
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYG-----ADVNADDTIGSTPLHLAADTGHLEIVE 130
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 80.9 bits (198), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
AG DVN ++ PLH+A G V +LL AGAD N +D +G H+AA
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA------ 121
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
RE ++ +L A V ++ GKT D
Sbjct: 122 REGHLEIVEVLLKAGADVNAQDKFGKTAFD 151
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 57/95 (60%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL AGA+ A+D T LH+A+ +E+V+++L AG DVN ++ PLH+A
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL AGAD N QD G AF I+ D
Sbjct: 121 AREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 155
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA R G E+VE +L+ + +V+ DKDG PL A G E V L+K
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA+V ++ ++G+ P H+ A G + + LL AGAD NA D G++ ++
Sbjct: 102 AGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 627 DCAIVI 632
D A ++
Sbjct: 160 DLAEIL 165
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ DKDG PL A G E V L+K GA+V ++ ++
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G+ P H+ A G + + LL AGAD NA D +G + LH A + + + V+L+ G
Sbjct: 80 GYTP--LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 52/193 (26%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D +G + LH A + + + V+L+ G A +N+K
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-----ADVNAK 76
Query: 648 E---LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+ TPLHL A ++ H
Sbjct: 77 DKDGYTPLHL----------------------------------------AAREGH---- 92
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
E+V +LL AGA+ A+D T LH+A+ +E+V+++L AG DVN ++ +
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 765 ALARGAKSCVGLL 777
++ G + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 54/199 (27%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V ++ ++G+ P H+ A G + + LL AGAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVK 665
D +G + LH A + + + V+L+ G A +N+K+ TPLHL
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAG-----ADVNAKDKDGYTPLHL----------- 119
Query: 666 RWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN 725
A ++ H E+V +LL AGA+ AQD
Sbjct: 120 -----------------------------AAREGH----LEIVEVLLKAGADVNAQDKFG 146
Query: 726 RTALHIASMANDVELVKII 744
+TA I+ + +L +I+
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A DA T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN ++ + PLH+A G V +LL GAD N D GD H+AA I
Sbjct: 68 KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA-----I 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L H A V ++ GKT D
Sbjct: 123 MGHLEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A++ +E+V+++L G DVN + PLH+A
Sbjct: 61 EIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+A G T LHLA G E+VE +L++ + V+ +D G PL A G E V L+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V + +G + H+ A G + + LL GAD NA D G++ ++ D
Sbjct: 103 GADV--NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 628 CAIVI 632
A ++
Sbjct: 161 LAEIL 165
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASG---------------------------------- 47
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
LTPLHL ++ +V+ ++ + VN IDI G T L +AA + E+
Sbjct: 48 -LTPLHLAATYGHLEIVEVLLKHGAD---VNAIDIXG--STPLHLAALIGH------LEI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A++ +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H+ A G + + LL GAD NAVD G++ LH A + + V+L++G
Sbjct: 80 GSTP--LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 80.5 bits (197), Expect = 6e-15, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A DA T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN ++ + PLH+A G V +LL GAD N D GD H+AA I
Sbjct: 68 KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA-----I 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L H A V ++ GKT D
Sbjct: 123 MGHLEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 70.9 bits (172), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A++ +E+V+++L G DVN + PLH+A
Sbjct: 61 EIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+A G T LHLA G E+VE +L++ + V+ +D G PL A G E V L+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V + +G + H+ A G + + LL GAD NA D G++ ++ D
Sbjct: 103 GADV--NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 628 CAIVI 632
A ++
Sbjct: 161 LAEIL 165
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASG---------------------------------- 47
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
LTPLHL ++ +V+ ++ + VN IDI G T L +AA + E+
Sbjct: 48 -LTPLHLAATYGHLEIVEVLLKHGAD---VNAIDIMG--STPLHLAALIGH------LEI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A++ +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV--NAID 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G + H+ A G + + LL GAD NAVD G++ LH A + + V+L++G
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN ++ PLH+A A G V +LL GAD N D++G H+AA
Sbjct: 68 KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L H A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 52/95 (54%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN + PLH+A
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 52/193 (26%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D++G + LH A + + + V+L+NG A +N+
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG-----ADVNAS 76
Query: 648 EL---TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+L TPLHL AT ++
Sbjct: 77 DLTGITPLHLAAATGHL------------------------------------------- 93
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN ++ +
Sbjct: 94 -EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 765 ALARGAKSCVGLL 777
++ G + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
DG T LHLA G E+VE +L+ + +V+ D G PL A A G E V L+K GA
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
+V + +G P H+ A +G + + LL GAD NA D G++ ++ D A
Sbjct: 105 DVNAYDNDGHTP--LHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 630 IVI 632
++
Sbjct: 163 EIL 165
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D DG PL A + G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H+ A G + + LL GAD NA D++G + LH A + + V+L++G
Sbjct: 80 GITP--LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 48/196 (24%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + +G+ P H+ A +G + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTP--LHLAASNGHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWV 668
D G + LH A A + + V+L++G + ++ TPLHL
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGA--DVNAYDNDGHTPLHL-------------- 119
Query: 669 EVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTA 728
A K H E+V +LL GA+ AQD +TA
Sbjct: 120 --------------------------AAKYGH----LEIVEVLLKHGADVNAQDKFGKTA 149
Query: 729 LHIASMANDVELVKII 744
I+ + +L +I+
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D +T LH+A++ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + PLH+A G V +LL GAD N D G H+AADA
Sbjct: 68 KHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A++ +E+V+++L G DVN + + PLH+A
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 ADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G+T LHLA +G E+VE +L++ + V+ DK GD PL A G E V L+K
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA+V + GF P H+ A G + + LL GAD NA D G++ ++
Sbjct: 102 NGADVNATDTYGFTP--LHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 627 DCAIVI 632
D A ++
Sbjct: 160 DLAEIL 165
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA DD G++ LH A K + + V+L++G + A +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA--DKM 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
TPLHL AAL E+
Sbjct: 80 GDTPLHL---------------------------------------AALYGHLEI----- 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A+ A +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V + +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H+ A +G + + LL GAD NA D G + LH A + + V+L+ G
Sbjct: 80 GDTP--LHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G P H+ A G + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTP--LHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVK 665
D G++ LH A + + V+L+NG + ++ TPLHL ++ +V+
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGA--DVNATDTYGFTPLHLAADAGHLEIVE 130
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
++ V+ L+ GA+ A D+ RT LH A+ E+VK+++ G DVN ++ PLH
Sbjct: 17 KDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY 76
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVE 824
A G K V LL+S GAD N +D +G H AA +E + ++ +L A V
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA------KEGHKEIVKLLISKGADVN 130
Query: 825 VRNHSGKTLRDFLEGLPREWISEDLMEALMNRG 857
+ G+T D L RE +E++++ L +G
Sbjct: 131 TSDSDGRTPLD----LAREHGNEEIVKLLEKQG 159
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
+E+V++L++ GA+ A+D+ RT LH A+ E+VK+++ G DVN ++ PLH
Sbjct: 50 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY 109
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA-----ADAAKMIRENLEWL 812
A G K V LL+S GAD N D +G +A + K++ + WL
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
++DG+T LH A + G E+V+ ++ + V+ D DG PL +A G E V LI +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V ++ +G P H A G + ++ L+ GAD N D +G + L +A+++ +
Sbjct: 93 GADVNAKDSDGRTP--LHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD--LAREHGN 148
Query: 628 CAIV-ILENGG 637
IV +LE G
Sbjct: 149 EEIVKLLEKQG 159
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A G+ + V+ ++E + +V+ D DG PL +A G E V LI +GA+V ++ +
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H A G + ++ L+ GAD NA D +G + LH A + + + +++ G
Sbjct: 70 GRTP--LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVK 665
+ +S TPL L N +VK
Sbjct: 128 --DVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+++DG+T LH A + G E+V+ ++ + V+ D DG PL +A G E V LI
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 567 RGANVISRLREGFGP 581
+GA+V + +G P
Sbjct: 125 KGADVNTSDSDGRTP 139
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 10/153 (6%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
++ V+ LL GA+P A D+ RT LH A+ E+VK++L G D N ++ PLH
Sbjct: 17 KDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 76
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVE 824
A G K V LLLS GAD N +D +G H AA+ +E ++ L+ + P+ +
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH--KEIVKLLLSKGADPNTS-- 132
Query: 825 VRNHSGKTLRDFLEGLPREWISEDLMEALMNRG 857
+ G+T D L RE +E++++ L +G
Sbjct: 133 --DSDGRTPLD----LAREHGNEEIVKLLEKQG 159
Score = 77.8 bits (190), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
+E+V++LL+ GA+P A+D+ RT LH A+ E+VK++L G D N ++ PLH
Sbjct: 50 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 109
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA-----ADAAKMIRENLEWL 812
A G K V LLLS GAD N D +G +A + K++ + WL
Sbjct: 110 AAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
++DG+T LH A G E+V+ +L + + D DG PL +A G E V L+ +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+ ++ +G P H A +G + ++ LL GADPN D +G + L +A+++ +
Sbjct: 93 GADPNAKDSDGRTP--LHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLD--LAREHGN 148
Query: 628 CAIV-ILENGG 637
IV +LE G
Sbjct: 149 EEIVKLLEKQG 159
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A G+ + V+ +LE + + + D DG PL +A G E V L+ +GA+ ++ +
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H A +G + ++ LL GADPNA D +G + LH A + + ++L G
Sbjct: 70 GRTP--LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVK 665
+ + +S TPL L N +VK
Sbjct: 128 DPNTS--DSDGRTPLDLAREHGNEEIVK 153
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+++DG+T LH A G E+V+ +L + + D DG PL +A G E V L+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 567 RGANVISRLREGFGP 581
+GA+ + +G P
Sbjct: 125 KGADPNTSDSDGRTP 139
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
+E+V++LL+ GA+P A+D+ +T LH+A+ E+VK++L G D N ++ PLH+
Sbjct: 50 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 109
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA-----ADAAKMIRENLEWL 812
A G K V LLLS GAD N D +G +A + K++ + WL
Sbjct: 110 AAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
++ V+ LL GA+ A D+ +T LH+A+ E+VK++L G D N ++ PLH+
Sbjct: 17 KDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 76
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVE 824
A G K V LLLS GAD N +D +G H+AA+ +E ++ L+ + P+ +
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH--KEVVKLLLSQGADPNTS-- 132
Query: 825 VRNHSGKTLRDFLEGLPREWISEDLMEALMNRG 857
+ G+T D L RE +E++++ L +G
Sbjct: 133 --DSDGRTPLD----LAREHGNEEVVKLLEKQG 159
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A G+ + V+ +LE + +V+ D DG PL A G E V L+ +GA+ ++ +
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H+ A +G + ++ LL GADPNA D +G++ LH A + + ++L G
Sbjct: 70 GKTP--LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVK 665
+ + +S TPL L N VVK
Sbjct: 128 DPNTS--DSDGRTPLDLAREHGNEEVVK 153
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
++DG+T LHLA G E+V+ +L + + D DG PL A G E V L+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+ ++ +G P H+ A +G + ++ LL GADPN D +G + L A +
Sbjct: 93 GADPNAKDSDGKTP--LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 628 CAIVILENGG 637
++ + GG
Sbjct: 151 VVKLLEKQGG 160
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+++DG+T LHLA G E+V+ +L + + D DG PL A G E V L+
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 567 RGANVISRLREGFGP 581
+GA+ + +G P
Sbjct: 125 QGADPNTSDSDGRTP 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 77.8 bits (190), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 56/95 (58%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A+D+ T LH+A+ +E+V+++L G DVN + H PLH+A
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
RG V +LL GAD N QD G AF I+ D
Sbjct: 121 AKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Score = 77.0 bits (188), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN ++ PLH+A RG V +LL GAD N D G H+AA
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK----- 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
R +LE + V+L + A V ++ GKT D
Sbjct: 123 RGHLEIVEVLLKN-GADVNAQDKFGKTAFD 151
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L+ + +V+ D G PL A G E V L+K GA+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V + GF P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNASDSHGFTP--LHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 52/193 (26%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G + LH A + + V+L+NG A +N+K
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG-----ADVNAK 76
Query: 648 E---LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+ +TPLHL A ++ H
Sbjct: 77 DSLGVTPLHL----------------------------------------AARRGH---- 92
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
E+V +LL GA+ A D+ T LH+A+ +E+V+++L G DVN ++ +
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 765 ALARGAKSCVGLL 777
++ G + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V ++
Sbjct: 21 AARAGQDDEVR-ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV--NAKD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G + H+ A G + + LL GAD NA D G + LH A + + + V+L+NG
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G T LHLA +RG E+VE +L+ + +V+ DK G ++ G+ + L K
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 77.8 bits (190), Expect = 5e-14, Method: Composition-based stats.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D RT LH+A+ +E+V+++L
Sbjct: 2 LGKKLLEAARAGQDDEV------RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL 55
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + + T PLH+A + G V +LL GAD N +D G ++AA
Sbjct: 56 RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWG--- 112
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPREWISEDLMEAL 853
+LE + V+L H A V ++ GKT D + + +EDL E L
Sbjct: 113 --HLEIVEVLLKH-GADVNAQDKFGKTAFD----ISIDIGNEDLAEIL 153
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G+T LH+A G E+VE +L + +V+ +D +G PL A + G E V L+K GA+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVL 617
V ++ G P ++ AY G + + LL GAD NA D G++
Sbjct: 94 VNAKDATGITP--LYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G + LH A A + + V+L NG + +++
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA--DVNAVDTN 67
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
TPLHL + ++ +V+ ++ + VN D G T L +AA E+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGI--TPLYLAAYWGH------LEI 116
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKII 744
V +LL GA+ AQD +TA I+ + +L +I+
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+ +G T LHLA G E+VE +L+Y + V+ D G PL A G E V L+K
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 568 GANV 571
GA+V
Sbjct: 124 GADV 127
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGRDDEV------RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + + PLH+A G V +LL GAD N +DD G H+AA+
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAAN----- 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
R +LE + V+L + A V ++ GKT D
Sbjct: 123 RGHLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN ++ + PLH+A
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
RG V +LL GAD N QD G AF I+
Sbjct: 121 ANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L+ + +V+ D G PL A G E V L+K GA+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V ++ G P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNAKDDNGITP--LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV--NAYD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G + H+ A+ G + + LL GAD NA DD G + LH A + + + V+L+ G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 34.3 bits (77), Expect = 0.53, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G T LHLA RG E+VE +L+Y + V+ DK G ++ G+ + L K
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNGNEDLAEILQK 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + PLH+A RG V +LL GAD N D G H+AA+
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L H A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D+ T LH+A+ +E+V+++L G DVN + + PLH+A
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 ANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L+ + +V+ D G PL A G E V L+K GA+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V + GF P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNANDHNGFTP--LHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G + LH A + + V+L+NG + +S
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA--DVNADDSL 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
+TPLHL A + H E+
Sbjct: 80 GVTPLHL----------------------------------------AADRGH----LEV 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A+ +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G+ P H+ AY G + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTP--LHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVK 665
D G + LH A + + + V+L+NG A +N+ + TPLHL ++ +V+
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNG-----ADVNANDHNGFTPLHLAANIGHLEIVE 130
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV--NADD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G + H+ A G + + LL GAD NA D G + LH A + + V+L++G
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KL KKLG G+ EVW A +H+ K M M + + + ++ +
Sbjct: 190 LKLEKKLGAGQFG--EVWMATYN------KHTKVAVKTMKPGSMSVEAFLAEANVMK--T 239
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + H V+ + + GS+ ++ +EG + L +++ + A IA G+
Sbjct: 240 LQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 299
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ AS ++D+GLA +++ ++ +
Sbjct: 300 IEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE-------------DNEYTAREGAK 346
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA +N + +SD WSFG L+E+ T G IP+ G+S E+
Sbjct: 347 FPIKWTAPEA-------INFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV 394
Query: 376 YRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
RA+ + ++P P+ P EL+ ++ C + + +RPTF
Sbjct: 395 IRALERGYRMPRPE-------NCPEELYNIMMRCWKNRPEERPTF 432
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+++ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DV+ +V+ PLH+A G V +LL GAD N D G H+AAD
Sbjct: 68 KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+M +E+V+++L G DVN ++ + PLH+A
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 ADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 15/156 (9%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NAVD+ G + LH A + + V+L++G A +
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--DVY 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGR-E 706
TPLHL T ++ +V+ ++ + VN D+ G T L +AA EG E
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTG--STPLHLAAD-------EGHLE 127
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVK 742
+V +LL GA+ AQD +TA I+ + +L K
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L++ + VD D G PL A G E V L+K GA+
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
V + G P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNAFDMTGSTP--LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ +D G PL A +G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GF P H+ A G + + LL GAD NA D G + LH A + + + V+L+ G
Sbjct: 80 GFTP--LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 45/287 (15%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
+KL KKLG G+ EVW A +H+ K M M + + + ++
Sbjct: 15 ESLKLEKKLGAGQFG--EVWMATYN------KHTKVAVKTMKPGSMSVEAFLAEANVMK- 65
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGV 254
++ + H V+ + + GS+ ++ +EG + L +++ + A IA G+
Sbjct: 66 -TLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGM 124
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
+ + +++ +N+L+ AS ++D+GLA +++ ++ +
Sbjct: 125 AFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE-------------DNEYTAREG 171
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+TAPEA +N + +SD WSFG L+E+ T G IP+ G+S
Sbjct: 172 AKFPIKWTAPEA-------INFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP 219
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
E+ RA+ + ++P P+ P EL+ ++ C + + +RPTF
Sbjct: 220 EVIRALERGYRMPRPE-------NCPEELYNIMMRCWKNRPEERPTF 259
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 74.7 bits (182), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN + PLH+A RG V +LL GAD N QD G AF I+ D
Sbjct: 68 KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ LD+DG PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV--NAED 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
FG + H+ A G + + LL GAD NA D G++ ++ D A ++
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+ DG T LHLA + G E+VE +L+Y + V+ D G PL A G E V L+K
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPD 594
GA+V ++ FG + + +G D
Sbjct: 103 GADV--NAQDKFGKTAFDISIDNGNED 127
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
VN +D G T L +AA L E+V +LL GA+ A+D T LH+A++
Sbjct: 40 VNALDEDGL--TPLHLAAQLGH------LEIVEVLLKYGADVNAEDNFGITPLHLAAIRG 91
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+E+V+++L G DVN ++ +++ G + +L
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA+D++G + LH A + + V+L+ G A +N++
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG-----ADVNAE 76
Query: 648 E---LTPLHLCVATWNVAVVK 665
+ +TPLHL ++ +V+
Sbjct: 77 DNFGITPLHLAAIRGHLEIVE 97
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ + +E+V+++L
Sbjct: 14 LGRKLLEAARAGQDDEV------RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DV+ +V PLH+A G V +LL GAD N D +G H+AA
Sbjct: 68 KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGY-- 125
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
LE + V+L H A V ++ GKT D
Sbjct: 126 ---LEIVEVLLKH-GADVNAQDKFGKTAFD 151
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 52/95 (54%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN + PLH+A
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A +G E V L+K GA+V + +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS--D 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
FG + H+ AY G + + LL GAD NA+D +G + LH A Y + V+L++G
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L++ + VD D G PL A G E V L+K GA+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V + +G P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNAMDSDGMTP--LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 52/193 (26%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D+ G + LH A + + V+L++G A +++
Sbjct: 22 ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG-----ADVDAS 76
Query: 648 EL---TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
++ TPLHL A W
Sbjct: 77 DVFGYTPLHL-AAYWG-------------------------------------------H 92
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
E+V +LL GA+ A D+ T LH+A+ +E+V+++L G DVN ++ +
Sbjct: 93 LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 765 ALARGAKSCVGLL 777
++ G + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++DG T LHLA + G E+VE +L++ + V+ DK G ++ G+ + L K
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 73.6 bits (179), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D + T LH+A+ + +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN + + PLH+A G V +LL GAD N QD G AF I+ D
Sbjct: 68 KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A++ +E+V+++L G DVN ++ ++
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 766 LARGAKSCVGLL 777
+ G + +L
Sbjct: 121 IDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA E+VE +L++ + V+ D DG PL A G E V L+K GA+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D+ G+ PL A E V L+K GA+V + +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
G P H+ A G + + LL GAD NA D G++ ++ D A ++
Sbjct: 80 GSTP--LHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + R+G P H+ A + + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTP--LHLAADYDHLEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
D++G + LH A + + V+L++G
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+ DG T LHLA G E+VE +L++ + V+ DK G ++ G+ + L K
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L A +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEATRAGQDDEV------RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN R++ PLH+A G V +LL GAD N QD G AF I+ D
Sbjct: 68 KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISID 122
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DVN + PLH+A RG V +LL GAD N +D G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 792 DNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
H+AA +LE + V+L + A V ++ GKT D
Sbjct: 81 RTPLHLAATVG-----HLEIVEVLLEY-GADVNAQDKFGKTAFD 118
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
VN +D G T L +AA K+ H E+V +LL GA+ A+D RT LH+A+
Sbjct: 40 VNAMDDAGV--TPLHLAA--KRGH----LEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+E+V+++L+ G DVN ++ +++ G + +L
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 591 GQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKEL- 649
GQ D +R L+ GAD NA+DD G + LH A + + + V+L++G A +N++++
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-----ADVNARDIW 79
Query: 650 --TPLHLCVATWNVAVVKRWVEVAS 672
TPLHL ++ +V+ +E +
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA +RG E+VE +L++ + V+ D G PL A G E V L++ GA+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ +D G PL A G E V L+K GA+V R+
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV--NARD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
+G + H+ A G + + LL GAD NA D G++ ++ D A ++
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.043, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G P H+ A G + + LL GAD NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTP--LHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
D G + LH A + + V+LE G
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
G+T LHLA G E+VE +LEY + V+ DK G ++ G+ + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 9 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 59
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 60 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 119
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 120 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 165
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 166 ---DHXVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 215
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 216 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 265
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+M + +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN + PLH+ G V +LL GAD N QD G AF I+ D
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A DA T LH+ +M +E+V+++L G DVN ++ ++
Sbjct: 61 EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 766 LARGAKSCVGLL 777
+ G + +L
Sbjct: 121 IDNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ DK G PL A E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV--NAID 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
G + H+ A +G + + LL GAD NA D G++ ++ D A ++
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA E+VE +L+ + +V+ +D G+ PL G E V L+K GA+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + + G P H+ A + + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTP--LHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
+D GE+ LH + + V+L++G
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G + LH A + + V+L+NG + +++
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA--DVNAIDAI 79
Query: 648 ELTPLHLCVATWNVAVVK 665
TPLHL ++ +V+
Sbjct: 80 GETPLHLVAMYGHLEIVE 97
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + + PLH+A G V +LL GAD N +D EG H+AA
Sbjct: 68 KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA + G E+VE +L+Y + V+ D G PL A G E V L+K GA+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V ++ EGF P H+ AY G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNAKDYEGFTP--LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T LH+A+ +E+V+++L G DVN ++ PLH+A
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA D G + LH A + + V+L+ G + ++
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNY 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
TPLHL ++ E+
Sbjct: 80 GATPLHLAADNGHL--------------------------------------------EI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A+D + T LH+A+ +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV--NAWD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
+G + H+ A +G + + LL GAD NA D EG + LH A + + V+L+ G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G T LHLA G E+VE +L+Y + V+ DK G ++ G+ + L K
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 13 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 63
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 64 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 123
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 124 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 169
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 170 ---DHYVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 219
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 220 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 269
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 19 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 69
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 70 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 129
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 130 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 175
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 176 ---DHXVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 225
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 226 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 275
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 9 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 59
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 60 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 119
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 120 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 165
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 166 ---DHYVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 215
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 216 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 265
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 9 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 59
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 60 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 119
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 120 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 165
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 166 ---DHYVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 215
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 216 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 265
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 19 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 69
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 70 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 129
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 130 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 175
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 176 ---DHYVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 225
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 226 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 275
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG--QLDNLR 194
D++L++KLG+G GV G W G+ SVAVK ++PD LS +D+
Sbjct: 13 DLRLLEKLGDGS-FGVVRRGEW-DAPSGKTV-SVAVKC------LKPDVLSQPEAMDDFI 63
Query: 195 RA-----SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
R S+ RN+ +GV+ + GS+ +++++G L + RY
Sbjct: 64 REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ 123
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+A G+ L + + ++ NLLL + D+GL +A P+ D
Sbjct: 124 VAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM---------RALPQND----- 169
Query: 310 SCMDCTMLSPNYTAPEAW-EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPW 367
D ++ + P AW P F S SD W FG TL EM T G PW
Sbjct: 170 ---DHYVMQEHRKVPFAWCAPESLKTRTF-------SHASDTWMFGVTLWEMFTYGQEPW 219
Query: 368 AGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
GL+ +I + K + P+ P++++ ++ +C K RPTF A+
Sbjct: 220 IGLNGSQILHKIDKEGERLPRPED-----CPQDIYNVMVQCWAHKPEDRPTFVAL 269
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 28/235 (11%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + +E + +++++ ARG+ LHA
Sbjct: 69 NILLFMG-YSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK 127
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + S + ++L
Sbjct: 128 SIIHRDLKSNNIFLHEDNTVKIGDFGLATV---------KSRWSGSHQFEQLSGSIL--- 175
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D+ S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 176 WMAPEV---------IRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMV 226
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP+F +LA ++EL R
Sbjct: 227 GRGSLSPDL-SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA----EIEELAR 276
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V H + + L L++D G E T E + Y A++A G+ LH+ G+
Sbjct: 92 VVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGI 151
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLA--AILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
+ ++KP N+LLD G ++D+GL+ AI + +KA C +
Sbjct: 152 IYRDLKPENILLDEEGHIKLTDFGLSKEAIDHE---KKAYSFCGTVE------------- 195
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y APE V + G S +D WS+G + EM TGS+P+ G +E ++
Sbjct: 196 YMAPEV---VNRQ---------GHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLIL 243
Query: 381 KNRKLPPQYASIVGVGIPRELWK 403
K + PQ+ S + R L+K
Sbjct: 244 KAKLGMPQFLSTEAQSLLRALFK 266
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 55/285 (19%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KL KKLG G+ EVW A +H+ K M M + + + ++ +
Sbjct: 184 LKLEKKLGAGQFG--EVWMATYN------KHTKVAVKTMKPGSMSVEAFLAEANVMK--T 233
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + H V+ + + GS+ ++ +EG + L +++ + A IA G+
Sbjct: 234 LQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 293
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ AS ++D+GLA + K +
Sbjct: 294 IEQRNYIHRDLRAANILVSASLVCKIADFGLARVGAKFPIK------------------- 334
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA +N + +SD WSFG L+E+ T G IP+ G+S E+
Sbjct: 335 ----WTAPEA-------INFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV 378
Query: 376 YRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
RA+ + ++P P+ P EL+ ++ C + + +RPTF
Sbjct: 379 IRALERGYRMPRPE-------NCPEELYNIMMRCWKNRPEERPTF 416
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AAA +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 6 LGKKLLEAAAAGQDDEV------RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + PLH+A G V +LL GAD N D G H+AA + +
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ-- 117
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
LE + V+L H A V ++ G T D
Sbjct: 118 ---LEIVEVLLKH-GADVNAQDALGLTAFD 143
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 54/98 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D+ T LH+A+ +E+V+++L G DVN + PLH+A
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAK 803
G V +LL GAD N QD G AF I+ + +
Sbjct: 113 ALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQ 150
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L+ GAD NA DD G + LH A A + V+L+NG + +S
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA--DVNASDSA 71
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
+TPLHL ++ E+
Sbjct: 72 GITPLHLAAYDGHL--------------------------------------------EI 87
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D T LH+A+++ +E+V+++L G DVN ++ +++
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 768 RGAKSCVGLL 777
+G + +L
Sbjct: 148 QGQEDLAEIL 157
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
+G T LHLA G E+VE +L+ + +V+ D G PL A G E V L+K GA
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
+V + R G+ P H+ A GQ + + LL GAD NA D G + ++ + D A
Sbjct: 97 DVNAYDRAGWTP--LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLA 154
Query: 630 IVI 632
++
Sbjct: 155 EIL 157
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 530 ILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAY 589
IL + +V+ D +G PL A A G E V L+K GA+V + G P H+ AY
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP--LHLAAY 81
Query: 590 HGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G + + LL GAD NA D G + LH A + V+L++G
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 543 KDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLA 602
+D L+ A AAG + V L+ GA+V + G P H+ A +GQ + + LL
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTP--LHLAAANGQLEIVEVLLKN 61
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVA 662
GAD NA D G + LH A + + V+L++G + + TPLHL
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA--DVNAYDRAGWTPLHL-------- 111
Query: 663 VVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQD 722
AAL E+ V +LL GA+ AQD
Sbjct: 112 -------------------------------AALSGQLEI-----VEVLLKHGADVNAQD 135
Query: 723 AQNRTALHIASMANDVELVKII 744
A TA I+ +L +I+
Sbjct: 136 ALGLTAFDISINQGQEDLAEIL 157
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + +E + +++++ ARG+ LHA
Sbjct: 81 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK 139
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + SR LS +
Sbjct: 140 SIIHRDLKSNNIFLHEDNTVKIGDFGLA--------------TEKSRWSGSHQFEQLSGS 185
Query: 321 --YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
+ APE + D+ S +SD ++FG L E+ TG +P++ ++ +
Sbjct: 186 ILWMAPEV---------IRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIE 236
Query: 379 VVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+V L P S V P+ + +++ ECL+ K +RP+F +LA ++EL R
Sbjct: 237 MVGRGSLSPDL-SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA----EIEELAR 288
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+DA T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGRDDEV------RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
G DVN + PL +A G V +LL GAD N D EG H+AA +
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA-----M 122
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 123 FGHLEIVEVLLKN-GADVNAQDKFGKTAFD 151
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A D T L +A++ +E+V+++L G DVN ++ PLH+A
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++A G T LHLA G E+VE +L+ + +V+ +D G PL A G E V L+K
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA+V + EG P H+ A G + + LL GAD NA D G++ ++
Sbjct: 102 NGADVNANDMEGHTP--LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 627 DCAIVI 632
D A ++
Sbjct: 160 DLAEIL 165
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 46/190 (24%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A G+ D +R L+ GAD NA D G + LH A + + V+L+NG
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA---------- 71
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
VN +D G T L +AA E+
Sbjct: 72 ----------------------------DVNAVDHAGM--TPLRLAALFGH------LEI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V +LL GA+ A D + T LH+A+M +E+V+++L G DVN ++ +++
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Query: 768 RGAKSCVGLL 777
G + +L
Sbjct: 156 NGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P + A G + + LL GAD NA D EG + LH A + + V+L+NG
Sbjct: 80 GMTP--LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G+ P H+ A++G + + LL GAD NA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTP--LHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKEL---TPLHLCVATWNVAVVK 665
VD G + L A + + V+L+NG A +N+ ++ TPLHL ++ +V+
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNG-----ADVNANDMEGHTPLHLAAMFGHLEIVE 130
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 216 LGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L +V C GS + + +E + +++++ ARG+ LHA ++ ++K +N+ L
Sbjct: 94 LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL 153
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN--YTAPEAWEPVKK 332
+ D+GLA + SR LS + + APE
Sbjct: 154 HEDNTVKIGDFGLA--------------TEKSRWSGSHQFEQLSGSILWMAPEV------ 193
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASI 392
+ D+ S +SD ++FG L E+ TG +P++ ++ + +V L P S
Sbjct: 194 ---IRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDL-SK 249
Query: 393 VGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
V P+ + +++ ECL+ K +RP+F +LA ++EL R
Sbjct: 250 VRSNCPKRMKRLMAECLKKKRDERPSFPRILA----EIEELAR 288
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
++ V+ L+ GA+ A D+ RT LH A+ E+VK+++ G DVN ++ PLH
Sbjct: 17 KDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH 76
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVE 824
A G K V LL+S GAD N +D +G H AA+ + ++ +L A V
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH------KEVVKLLISKGADVN 130
Query: 825 VRNHSGKTLRDFLEGLPREWISEDLMEALMNRG 857
+ G+T D L RE +E++++ L +G
Sbjct: 131 TSDSDGRTPLD----LAREHGNEEVVKLLEKQG 159
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A G+ + V+ ++E + V+ D DG PL A G E V LI +GA+V ++ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P H A +G + ++ L+ GAD NA D +G + LH A + + +++ G
Sbjct: 70 GRTP--LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVK 665
+ +S TPL L N VVK
Sbjct: 128 --DVNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
++DG+T LH A G E+V+ ++ + V+ D DG PL A G E V LI +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V ++ +G P H A +G + ++ L+ GAD N D +G + L +A+++ +
Sbjct: 93 GADVNAKDSDGRTP--LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL--DLAREHGN 148
Query: 628 CAIVIL 633
+V L
Sbjct: 149 EEVVKL 154
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+++DG+T LH A G E+V+ ++ + V+ D DG PL A G E V LI
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAG 603
+GA+V + +G P + HG + ++ L G
Sbjct: 125 KGADVNTSDSDGRTP--LDLAREHGNEEVVKLLEKQG 159
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V++LL AGA+ A+D RT LH+A+ +E+VK++L+AG DVN ++ + PLH+A
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 766 LARGAKSCVGLLLSAGA 782
G V LLL AGA
Sbjct: 76 ARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RT LH+A+ +E+VK++L+AG DVN ++ + PLH+A G V LLL AGAD N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 786 WQDDEGDNAFHIAA 799
+D G H+AA
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
+G+T LHLA R G E+V+ +LE + +V+ DK+G PL A G E V L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGA 604
+V ++ + G P H+ A +G + ++ LL AGA
Sbjct: 60 DVNAKDKNGRTP--LHLAARNGHLEVVKLLLEAGA 92
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 580 GPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCR 639
G + H+ A +G + ++ LL AGAD NA D G + LH A + + ++LE G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--- 58
Query: 640 SMAILNSKE---LTPLHLCVATWNVAVVKRWVEVAS 672
A +N+K+ TPLHL ++ VVK +E +
Sbjct: 59 --ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G+T LHLA R G E+V+ +LE + +V+ DK+G PL A G E V L++
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 567 RGA 569
GA
Sbjct: 90 AGA 92
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 70.5 bits (171), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L A +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEATRAGQDDEV------RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN ++ PLH+A G V +LL GAD N QD G AF I+ D
Sbjct: 68 KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISID 122
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DVN + PLH+A RG V +LL GAD N D G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 792 DNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
H+AA +LE + V+L + A V ++ GKT D
Sbjct: 81 RTPLHLAATVG-----HLEIVEVLLEY-GADVNAQDKFGKTAFD 118
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
VN +D G T L +AA K+ H E+V +LL GA+ A D RT LH+A+
Sbjct: 40 VNAMDDAGV--TPLHLAA--KRGH----LEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+E+V+++L+ G DVN ++ +++ G + +L
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 591 GQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKEL- 649
GQ D +R L+ GAD NA+DD G + LH A + + + V+L++G A +N+ ++
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-----ADVNASDIW 79
Query: 650 --TPLHLCVATWNVAVVKRWVEVAS 672
TPLHL ++ +V+ +E +
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA +RG E+VE +L++ + V+ D G PL A G E V L++ GA+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ +D G PL A G E V L+K GA+V +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV--NASD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
+G + H+ A G + + LL GAD NA D G++ ++ D A ++
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G P H+ A G + + LL GAD NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTP--LHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
D G + LH A + + V+LE G
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
G+T LHLA G E+VE +LEY + V+ DK G ++ G+ + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L A +D EV RIL+ GA+ A D T LH+A+ +E+V+++L
Sbjct: 14 LGKKLLEATRAGQDDEV------RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN + PLH+A G V +LL GAD N QD G AF I+ D
Sbjct: 68 KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISID 122
Score = 50.4 bits (119), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DVN + PLH+A RG V +LL GAD N D G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 792 DNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
H+AA +LE + V+L + A V ++ GKT D
Sbjct: 81 RTPLHLAATVG-----HLEIVEVLLEY-GADVNAQDKFGKTAFD 118
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
VN +D G T L +AA K+ H E+V +LL GA+ A D+ RT LH+A+
Sbjct: 40 VNAMDDAGV--TPLHLAA--KRGH----LEIVEVLLKHGADVNASDSWGRTPLHLAATVG 91
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+E+V+++L+ G DVN ++ +++ G + +L
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA +RG E+VE +L++ + V+ D G PL A G E V L++ GA+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 591 GQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELT 650
GQ D +R L+ GAD NA+DD G + LH A + + + V+L++G + +S T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDSWGRT 82
Query: 651 PLHLCVATWNVAVVKRWVEVAS 672
PLHL ++ +V+ +E +
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGA 104
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ +D G PL A G E V L+K GA+V +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV--NASD 77
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
+G + H+ A G + + LL GAD NA D G++ ++ D A ++
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V + G P H+ A G + + LL GAD NA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTP--LHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
D G + LH A + + V+LE G
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
G+T LHLA G E+VE +LEY + V+ DK G ++ G+ + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 73 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 132
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA + E D R +
Sbjct: 133 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA----------TKVEYDGERKKTLCG--- 179
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 180 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 226
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 227 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 266
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKD--GDPPLVFALAAGSPECVHALI 565
+ D +TALH AC G E+VE +L Q V V DKD G PL A +AG E V AL+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKY 625
+GA V + + G P H A + + LL GA+P+A D + +HRA AK
Sbjct: 94 GKGAQVNAVNQNGCTP--LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 626 TDCAIVILENGGCRSMAILNSKELTPLHL 654
++L S I +++ TPLHL
Sbjct: 152 LKMIHILLYYKA--STNIQDTEGNTPLHL 178
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 54/254 (21%)
Query: 525 ELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVA 584
EL E+IL + D+D L +A +AG E V L++ G V + G+ P
Sbjct: 21 ELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--L 77
Query: 585 HVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAIL 644
H+ A G+ + ++ LL GA NAV+ G + LH A +K + A+++LE G
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-- 135
Query: 645 NSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+ E T +H A N+
Sbjct: 136 DHYEATAMHRAAAKGNL------------------------------------------- 152
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
+++ ILL A QD + T LH+A VE K+++ G + I N PL V
Sbjct: 153 -KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211
Query: 765 ALARGAKSCVGLLL 778
AK +GL+L
Sbjct: 212 -----AKGGLGLIL 220
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 650 TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVR 709
T LH + + +V+ +++ P VN D G + L +AA+ +D E+V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP---VNDKDDAG--WSPLHIAASAGRD------EIVK 90
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA+ A + T LH A+ N E+ ++L+ G + + ++ + +H A A+G
Sbjct: 91 ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHS 829
+ +LL A N QD EG+ H+A D E +E +++S A++ + N
Sbjct: 151 NLKMIHILLYYKASTNIQDTEGNTPLHLACD-----EERVEEAKLLVSQ-GASIYIENKE 204
Query: 830 GKT 832
KT
Sbjct: 205 EKT 207
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 22/230 (9%)
Query: 586 VC--AYHGQPDCMRELLLAGAD-PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMA 642
VC AY G+ + ++E +LA D + + LH A + +T+ +L+ G
Sbjct: 10 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----V 64
Query: 643 ILNSKE---LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKD 699
+N K+ +PLH+ + +VK + + VN G AA K
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN------QNGCTPLHYAASKNR 118
Query: 700 HEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNT 759
HE+ +LL GA P A+D TA+H A+ +++++ I+L NI++
Sbjct: 119 HEI-----AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 173
Query: 760 IPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENL 809
PLH+A LL+S GA ++ E +A +I + +
Sbjct: 174 TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 223
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
EL +L + T D +RTALH A A E+V+ +L GV VN ++ PLH+A
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEV 825
+ G V LL GA N + G H AA +N + VML A +
Sbjct: 81 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDA 134
Query: 826 RNHSGKT 832
++H T
Sbjct: 135 KDHYEAT 141
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 73 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 132
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA + E D R +
Sbjct: 133 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA----------TKVEYDGERKKTLCG--- 179
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 180 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 226
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 227 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 266
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 11 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 60
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 61 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 120
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + N++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 121 IEERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNE-------------YTAREGAK 167
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 168 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 214
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 215 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 256
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKD--GDPPLVFALAAGSPECVHALI 565
+ D +TALH AC G E+VE +L Q V V DKD G PL A +AG E V AL+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKY 625
+GA V + + G P H A + + LL GA+P+A D + +HRA AK
Sbjct: 95 GKGAQVNAVNQNGCTP--LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 626 TDCAIVILENGGCRSMAILNSKELTPLHL 654
++L S I +++ TPLHL
Sbjct: 153 LKMIHILLYYKA--STNIQDTEGNTPLHL 179
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 54/254 (21%)
Query: 525 ELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVA 584
EL E+IL + D+D L +A +AG E V L++ G V + G+ P
Sbjct: 22 ELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--L 78
Query: 585 HVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAIL 644
H+ A G+ + ++ LL GA NAV+ G + LH A +K + A+++LE G
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-- 136
Query: 645 NSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEG 704
+ E T +H A N+
Sbjct: 137 DHYEATAMHRAAAKGNL------------------------------------------- 153
Query: 705 RELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHV 764
+++ ILL A QD + T LH+A VE K+++ G + I N PL V
Sbjct: 154 -KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212
Query: 765 ALARGAKSCVGLLL 778
AK +GL+L
Sbjct: 213 -----AKGGLGLIL 221
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 650 TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVR 709
T LH + + +V+ +++ P VN D G + L +AA+ +D E+V+
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVP---VNDKDDAG--WSPLHIAASAGRD------EIVK 91
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA+ A + T LH A+ N E+ ++L+ G + + ++ + +H A A+G
Sbjct: 92 ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHS 829
+ +LL A N QD EG+ H+A D E +E +++S A++ + N
Sbjct: 152 NLKMIHILLYYKASTNIQDTEGNTPLHLACD-----EERVEEAKLLVSQ-GASIYIENKE 205
Query: 830 GKT 832
KT
Sbjct: 206 EKT 208
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 22/230 (9%)
Query: 586 VC--AYHGQPDCMRELLLAGAD-PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMA 642
VC AY G+ + ++E +LA D + + LH A + +T+ +L+ G
Sbjct: 11 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----V 65
Query: 643 ILNSKE---LTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKD 699
+N K+ +PLH+ + +VK + + VN G AA K
Sbjct: 66 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN------QNGCTPLHYAASKNR 119
Query: 700 HEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNT 759
HE+ +LL GA P A+D TA+H A+ +++++ I+L NI++
Sbjct: 120 HEI-----AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 174
Query: 760 IPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENL 809
PLH+A LL+S GA ++ E +A +I + +
Sbjct: 175 TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 224
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
EL +L + T D +RTALH A A E+V+ +L GV VN ++ PLH+A
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEV 825
+ G V LL GA N + G H AA +N + VML A +
Sbjct: 82 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDA 135
Query: 826 RNHSGKT 832
++H T
Sbjct: 136 KDHYEAT 142
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 77 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 136
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA + E D R +
Sbjct: 137 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA----------TKVEYDGERKKTLCG--- 183
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 184 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 230
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 231 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 270
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 51/95 (53%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E++ +LL A+ A D T LH+A+ +E+V+++L G DVN + PLH+A
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G V +LL GAD N QD G AF I+ D
Sbjct: 121 AEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A D T LH+ +E+++++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMI 805
DVN + PLH+A RG V +LL GAD N D +G H+AA+
Sbjct: 68 KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDG--- 124
Query: 806 RENLEWLIVMLSHPDAAVEVRNHSGKTLRD 835
+LE + V+L + A V ++ GKT D
Sbjct: 125 --HLEIVEVLLKY-GADVNAQDKFGKTAFD 151
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHL G E++E +L+Y+ + V+ DK G PL A G E V L+K GA+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V + +G+ P H+ A G + + LL GAD NA D G++ ++ D A
Sbjct: 106 VNAMDYQGYTP--LHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 631 VI 632
++
Sbjct: 164 IL 165
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 611 DEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTPLHLCVATWNVAVVKRW 667
D G+ +L A A + D +++ NG A +N+ + +TPLHL V ++ +++
Sbjct: 13 DLGKKLLEAARAGQ-DDEVRILMANG-----ADVNANDWFGITPLHLVVNNGHLEIIEVL 66
Query: 668 VEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRT 727
++ A+ VN D G T L +AA + H E+V +LL GA+ A D Q T
Sbjct: 67 LKYAAD---VNASDKSG--WTPLHLAAY--RGH----LEIVEVLLKYGADVNAMDYQGYT 115
Query: 728 ALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
LH+A+ +E+V+++L G DVN ++ +++ G + +L
Sbjct: 116 PLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL + G E + L+K A+V + +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G+ P H+ AY G + + LL GAD NA+D +G + LH A + + V+L+ G
Sbjct: 80 GWTP--LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 34/256 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ + G VA+K ++ ++ P L +R
Sbjct: 13 NYRLLKTIGKGNFAKVKLARHILTG------REVAIK-IIDKTQLNPTSLQKLFREVRIM 65
Query: 197 SMWCR-NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ N+ V+ + L L+M+ G GR+ ++ I V
Sbjct: 66 KILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQ 125
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
H +V ++K NLLLDA ++D+G + + + +D
Sbjct: 126 YCHQKRIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTVGGKLDTF 170
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
SP Y APE ++ K +D PE D WS G L + +GS+P+ G + +E+
Sbjct: 171 CGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQNLKEL 219
Query: 376 YRAVVKNRKLPPQYAS 391
V++ + P Y S
Sbjct: 220 RERVLRGKYRIPFYMS 235
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 50/294 (17%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQL---- 190
+KLVK+LG G+ EVW + VAVK ++P +S Q
Sbjct: 12 RESIKLVKRLGAGQFG--EVWMGYYNNST-----KVAVKT------LKPGTMSVQAFLEE 58
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGAD 249
NL + + V + V R + + GS+ ++ +EG ++ L +++ + A
Sbjct: 59 ANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ 118
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
IA G+ + + +++ +N+L+ S ++D+GLA +++ +
Sbjct: 119 IAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIE-------------DNEY 165
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWA 368
+ + +TAPEA + F + +SD WSFG L E+ T G IP+
Sbjct: 166 TAREGAKFPIKWTAPEAI-----NFGCF-------TIKSDVWSFGILLYEIVTYGKIPYP 213
Query: 369 GLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
G + ++ A+ + ++P P EL+ ++ C + KA +RPTF +
Sbjct: 214 GRTNADVMTALSQGYRMPRV------ENCPDELYDIMKMCWKEKAEERPTFDYL 261
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 30/197 (15%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + L VM+ G + + G+ Q + Y A+I+ G+ LH G+
Sbjct: 82 LTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGI 141
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ ++K N++LD+ G ++D+G+ C++ + ++R C +P+Y
Sbjct: 142 IYRDLKLDNVMLDSEGHIKIADFGM--------CKEHMMDGVTTR-EFCG-----TPDYI 187
Query: 323 APE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
APE A++P KS+ D W++G L EM G P+ G +E++++++
Sbjct: 188 APEIIAYQPYGKSV--------------DWWAYGVLLYEMLAGQPPFDGEDEDELFQSIM 233
Query: 381 KNRKLPPQYASIVGVGI 397
++ P+ S V I
Sbjct: 234 EHNVSYPKSLSKEAVSI 250
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL GA+ A D T LH+A+M +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
G DVN PLH+A V +LL GAD N QD G AF I+ D
Sbjct: 68 KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A RT LH+A+ A+ +E+V+++L G DVN ++ ++
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 766 LARGAKSCVGLL 777
+ G + +L
Sbjct: 121 IDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G T LHLA G E+VE +L+ + +V+ G PL A A E V L+K GA+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLK-NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 571 VISRLREGFGPSVAHVCAYHGQPD 594
V ++ FG + + +G D
Sbjct: 106 V--NAQDKFGKTAFDISIDNGNED 127
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D G PL A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
G P H+ A+ + + LL GAD NA D G++ ++ D A ++
Sbjct: 80 GRTP--LHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 60/157 (38%), Gaps = 46/157 (29%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSK 647
A GQ D +R L GAD NA D G + LH A + + V+L+NG + +
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA--DVNATGNT 79
Query: 648 ELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGREL 707
TPLHL A W DH E+
Sbjct: 80 GRTPLHL--AAW--------------------------------------ADH----LEI 95
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKII 744
V +LL GA+ AQD +TA I+ + +L +I+
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 95 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 154
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA ++ RK + C
Sbjct: 155 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK------------VLCG- 201
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 202 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 248
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 249 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 288
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 71 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 130
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA ++ RK + C
Sbjct: 131 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK------------VLCG- 177
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 178 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 224
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 225 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 264
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
S+ ++V FHG + + +V++ C L + + LT + Y I G
Sbjct: 97 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY 156
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH V+ ++K NL L+ + D+GLA ++ RK + C
Sbjct: 157 LHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK------------VLCG- 203
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+PNY APE KK G S E D WS GC + + G P+ +E Y
Sbjct: 204 -TPNYIAPEVLS--KK----------GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 250
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ KN P++ + V +I + LQ + RPT + +L
Sbjct: 251 LRIKKNEYSIPKHINPVAAS-------LIQKMLQTDPTARPTINELL 290
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + L VM+ G + + GR + Y A+IA G+ L + G+
Sbjct: 83 LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGI 142
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ ++K N++LD+ G ++D+G+ C++ + +++ +P+Y
Sbjct: 143 IYRDLKLDNVMLDSEGHIKIADFGM--------CKENIWDGVTTKXFCG------TPDYI 188
Query: 323 APE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
APE A++P KS+ D W+FG L EM G P+ G +E++++++
Sbjct: 189 APEIIAYQPYGKSV--------------DWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 234
Query: 381 KNRKLPPQYASIVGVGI 397
++ P+ S V I
Sbjct: 235 EHNVAYPKSMSKEAVAI 251
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 116/277 (41%), Gaps = 47/277 (16%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G+ + ++K+GEG GV V+ A QGR VA+K++ + E E P ++
Sbjct: 18 GLMEKYQKLEKVGEGT-YGV-VYKA--KDSQGRI---VALKRIRLDAEDEGIPSTAIREI 70
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADI 250
L+ + N+ + V+ + CL LV + ++ + N+ L QI Y +
Sbjct: 71 SLLK--ELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQL 128
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
RGV H ++ ++KP NLL+++ G ++D+GLA P S H
Sbjct: 129 LRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV---------RSYTHE 179
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGL 370
+ Y AP+ KK S D WS GC EM TG + G+
Sbjct: 180 VVTLW-----YRAPDVLMGSKK-----------YSTSVDIWSIGCIFAEMITGKPLFPGV 223
Query: 371 SAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGE 407
+ ++ P+ SI+G PRE W + E
Sbjct: 224 TDDDQL----------PKIFSILGTPNPRE-WPQVQE 249
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 25 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 74
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 75 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 134
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 135 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE-------------DNEYTAREGAK 181
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E+
Sbjct: 182 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV 229
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
+ + + Y + P EL++++ C + + RPTF +
Sbjct: 230 IQNLERG------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 270
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 116/277 (41%), Gaps = 47/277 (16%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G+ + ++K+GEG GV V+ A QGR VA+K++ + E E P ++
Sbjct: 18 GLMEKYQKLEKVGEGT-YGV-VYKA--KDSQGRI---VALKRIRLDAEDEGIPSTAIREI 70
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADI 250
L+ + N+ + V+ + CL LV + ++ + N+ L QI Y +
Sbjct: 71 SLLK--ELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQL 128
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
RGV H ++ ++KP NLL+++ G ++D+GLA P S H
Sbjct: 129 LRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV---------RSYTHE 179
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGL 370
+ Y AP+ KK S D WS GC EM TG + G+
Sbjct: 180 VVTLW-----YRAPDVLMGSKK-----------YSTSVDIWSIGCIFAEMITGKPLFPGV 223
Query: 371 SAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGE 407
+ ++ P+ SI+G PRE W + E
Sbjct: 224 TDDDQL----------PKIFSILGTPNPRE-WPQVQE 249
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + L VM+ G + + GR + Y A+IA G+ L + G+
Sbjct: 404 LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGI 463
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ ++K N++LD+ G ++D+G+ C++ + +++ +P+Y
Sbjct: 464 IYRDLKLDNVMLDSEGHIKIADFGM--------CKENIWDGVTTKXFCG------TPDYI 509
Query: 323 APE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
APE A++P KS+ D W+FG L EM G P+ G +E++++++
Sbjct: 510 APEIIAYQPYGKSV--------------DWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 555
Query: 381 KNRKLPPQYASIVGVGIPREL 401
++ P+ S V I + L
Sbjct: 556 EHNVAYPKSMSKEAVAICKGL 576
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 34/256 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ + G VA+K ++ ++ P L +R
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTG------REVAIK-IIDKTQLNPTSLQKLFREVRIM 68
Query: 197 SMWCR-NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ N+ V+ + L L+M+ G GR+ ++ I V
Sbjct: 69 KILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQ 128
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
H +V ++K NLLLDA ++D+G + + + +D
Sbjct: 129 YCHQKRIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTVGGKLDAF 173
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
+P Y APE ++ K +D PE D WS G L + +GS+P+ G + +E+
Sbjct: 174 CGAPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQNLKEL 222
Query: 376 YRAVVKNRKLPPQYAS 391
V++ + P Y S
Sbjct: 223 RERVLRGKYRIPFYMS 238
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 20 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 69
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 70 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 129
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 130 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-------------YTAREGAK 176
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 177 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 223
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 224 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 265
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 21 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 70
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 71 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 130
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 131 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-------------YTAREGAK 177
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 178 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 224
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 225 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 266
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 15 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 64
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 65 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 125 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-------------YTAREGAK 171
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 172 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 218
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 219 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 10 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 59
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 60 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 119
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ ++ +
Sbjct: 120 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-------------YTAREGAK 166
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 167 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 213
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 214 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 255
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 47/252 (18%)
Query: 548 PLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPN 607
PL A AG + H L++ GAN+ + + P + A + + ++ L+ AGA +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME--AAENNHLEAVKYLIKAGALVD 71
Query: 608 AVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRW 667
D EG + LH A K + + +L NG
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNG------------------------------- 100
Query: 668 VEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRT 727
+ VN D G T + A E + +LV++LL+ G++ +D +
Sbjct: 101 ------QMDVNCQDDGG--WTPMIWAT------EYKHVDLVKLLLSKGSDINIRDNEENI 146
Query: 728 ALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQ 787
LH A+ + V++ +I+L A D++ N+H PLH+A CV L LS +D +
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206
Query: 788 DDEGDNAFHIAA 799
+ EG+ A+
Sbjct: 207 NKEGETPLQCAS 218
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++A+G T LHLA ++G E+V+ +L Q +V+ D G P+++A + V L+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
+G+++ +R+ H A+ G D LL A D +AV+ G+S LH A +
Sbjct: 133 KGSDI--NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190
Query: 627 DCAIVILENGGCRSMAILNSKELTPLH 653
DC ++ L + + N + TPL
Sbjct: 191 DCVVLFLSRDS--DVTLKNKEGETPLQ 215
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 50/260 (19%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ + ++ LH A G ++ +++ + N+D +D PL+ A E V LIK
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGA-DPNAVDDEGESVLHRAVAKKY 625
GA V + E G + H+ A G + ++ LL G D N DD G + + A K+
Sbjct: 66 AGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 626 TDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGP 685
D ++L G + I +++E LH W +
Sbjct: 124 VDLVKLLLSKGS--DINIRDNEENICLH-------------WAAFSG------------- 155
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
C+ ++ ILL A + A + + LHIA+ N + V + L
Sbjct: 156 -----CV-------------DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Query: 746 DAGVDVNIRNVHNTIPLHVA 765
DV ++N PL A
Sbjct: 198 SRDSDVTLKNKEGETPLQCA 217
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
R+ LH A+ A V++ +++ AG +++ + PL A V L+ AGA +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPREWI 845
+D EG H+AA + + E + +LS+ V ++ G T P W
Sbjct: 72 PKDAEGSTCLHLAAK-----KGHYEVVQYLLSNGQMDVNCQDDGGWT--------PMIWA 118
Query: 846 SE----DLMEALMNRG 857
+E DL++ L+++G
Sbjct: 119 TEYKHVDLVKLLLSKG 134
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L K +G+G A V++ + G VAVK ++ ++ P L +R
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLTG------REVAVK-IIDKTQLNPTSLQKLFREVRIM 68
Query: 197 SMWCR-NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ N+ V+ + L LVM+ G GR+ ++ I V
Sbjct: 69 KILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQ 128
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
H +V ++K NLLLD ++D+G + + + + +D
Sbjct: 129 YCHQKYIVHRDLKAENLLLDGDMNIKIADFGFS---------------NEFTVGNKLDTF 173
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
SP Y APE ++ K +D PE D WS G L + +GS+P+ G + +E+
Sbjct: 174 CGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQNLKEL 222
Query: 376 YRAVVKNRKLPPQYAS 391
V++ + P Y S
Sbjct: 223 RERVLRGKYRIPFYMS 238
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + + L L++D G E T E + Y A++A + LH+ G+
Sbjct: 89 IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI 148
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLA--AILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
+ ++KP N+LLD G ++D+GL+ +I + +KA C +
Sbjct: 149 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHE---KKAYSFCGTVE------------- 192
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y APE V + G + +D WSFG + EM TG++P+ G +E ++
Sbjct: 193 YMAPEV---VNRR---------GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMIL 240
Query: 381 KNRKLPPQYASIVGVGIPRELWK 403
K + PQ+ S + R L+K
Sbjct: 241 KAKLGMPQFLSPEAQSLLRMLFK 263
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + + L L++D G E T E + Y A++A + LH+ G+
Sbjct: 88 IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI 147
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLA--AILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
+ ++KP N+LLD G ++D+GL+ +I + +KA C +
Sbjct: 148 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHE---KKAYSFCGTVE------------- 191
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y APE V + G + +D WSFG + EM TG++P+ G +E ++
Sbjct: 192 YMAPEV---VNRR---------GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMIL 239
Query: 381 KNRKLPPQYASIVGVGIPRELWK 403
K + PQ+ S + R L+K
Sbjct: 240 KAKLGMPQFLSPEAQSLLRMLFK 262
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
+ H + + L L++D G E T E + Y A++A + LH+ G+
Sbjct: 88 IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI 147
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLA--AILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
+ ++KP N+LLD G ++D+GL+ +I + +KA C +
Sbjct: 148 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHE---KKAYSFCGTVE------------- 191
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y APE V + G + +D WSFG + EM TG++P+ G +E ++
Sbjct: 192 YMAPEV---VNRR---------GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMIL 239
Query: 381 KNRKLPPQYASIVGVGIPRELWK 403
K + PQ+ S + R L+K
Sbjct: 240 KAKLGMPQFLSPEAQSLLRMLFK 262
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 39/292 (13%)
Query: 156 GAWIGGGQ------GRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGV 209
G IG G+ GR VA++ + I + E QL +R M R + V
Sbjct: 38 GELIGKGRFGQVYHGRWHGEVAIRLIDIERDNE-----DQLKAFKREVMAYRQTRHENVV 92
Query: 210 LRMDSC-----LGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVELHAAGVV 263
L M +C L ++ C G ++ R+ L + + + +I +G+ LHA G++
Sbjct: 93 LFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGIL 152
Query: 264 CMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTA 323
++K N+ D +G+ V++D+GL +I +A D RI + C + A
Sbjct: 153 HKDLKSKNVFYD-NGKVVITDFGLFSI---SGVLQAGRREDKLRIQNGWLC------HLA 202
Query: 324 PEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR 383
PE + +D + S SD ++ G E+ P+ AE I +
Sbjct: 203 PEIIRQLSPDTE---EDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGM 259
Query: 384 KLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
K ++ +G+ +E+ ++ C F+ +RPTF+ ++ L++LP+
Sbjct: 260 K-----PNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDM----LEKLPK 302
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ AG EVW + G H+ K + M PD + + +++
Sbjct: 15 LKLVERLGAGQ-AG-EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 64
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 65 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ A AR +
Sbjct: 125 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED-AEXTAR------------EGAK 171
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 172 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 218
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 219 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GLA +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLARVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 114/292 (39%), Gaps = 49/292 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVKIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LVM+ G GR+ ++ I
Sbjct: 64 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D SP Y APE ++ K +D PE D WS G L + +GS+P+ G +
Sbjct: 169 LDTFCGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 218 LKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 262
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 114/292 (39%), Gaps = 49/292 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVKIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LVM+ G GR+ ++ I
Sbjct: 64 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D SP Y APE ++ K +D PE D WS G L + +GS+P+ G +
Sbjct: 169 LDTFCGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 218 LKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 262
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 43/218 (19%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
GS+ ++++ G L + +L +G IA+G+ L G+V N+ N+LL + + V+D
Sbjct: 99 GSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVAD 158
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+G+A +L P D ++S EA P+K W I
Sbjct: 159 FGVADLL---------PPDDKQLLYS--------------EAKTPIK------WMALESI 189
Query: 345 -----SPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGI 397
+ +SD WS+G T+ E+ T G+ P+AGL E+ + K +L PQ +I
Sbjct: 190 HFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTI----- 244
Query: 398 PRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+++ ++ +C + RPTF + F R ++ PR
Sbjct: 245 --DVYMVMVKCWMIDENIRPTFKELANEFTRMARDPPR 280
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 41/217 (18%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
GS+ ++++ G L + +L +G IA+G+ L G+V N+ N+LL + + V+D
Sbjct: 117 GSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVAD 176
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK----KSLNLFWDD 340
+G+A +L P D ++S EA P+K +S++
Sbjct: 177 FGVADLL---------PPDDKQLLYS--------------EAKTPIKWMALESIHFG--- 210
Query: 341 AIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIP 398
+ +SD WS+G T+ E+ T G+ P+AGL E+ + K +L PQ +I
Sbjct: 211 --KYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTI------ 262
Query: 399 RELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+++ ++ +C + RPTF + F R ++ PR
Sbjct: 263 -DVYMVMVKCWMIDENIRPTFKELANEFTRMARDPPR 298
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 23 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 72
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 73 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 132
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 133 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE-------------DNEXTAREGAK 179
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E+
Sbjct: 180 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV 227
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
+ + + Y + P EL++++ C + + RPTF +
Sbjct: 228 IQNLERG------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 268
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 21 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 70
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 71 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 130
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 131 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE-------------DNEXTAREGAK 177
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E+
Sbjct: 178 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV 225
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
+ + + Y + P EL++++ C + + RPTF +
Sbjct: 226 IQNLERG------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 266
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 114/292 (39%), Gaps = 49/292 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVRIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LVM+ G GR+ ++ I
Sbjct: 64 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D SP Y APE ++ K +D PE D WS G L + +GS+P+ G +
Sbjct: 169 LDTFCGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 218 LKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 262
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 36/279 (12%)
Query: 131 EVGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMI---AEEMEPDWLS 187
+VG+ + +L+K LG G V + G G+ +KK I A+ E
Sbjct: 50 KVGIE-NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTE 108
Query: 188 GQ-LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRY 246
Q L+++R++ + T H + ++ L L++D G R T ++ Y
Sbjct: 109 RQVLEHIRQSPF----LVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIY 164
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
+I + LH G++ +IK N+LLD++G V++D+GL+ +A C +
Sbjct: 165 VGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTI 224
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y AP+ + + + D A+ D WS G + E+ TG+ P
Sbjct: 225 -------------EYMAPD----IVRGGDSGHDKAV------DWWSLGVLMYELLTGASP 261
Query: 367 WA----GLSAEEIYRAVVKNRKLPPQYASIVGVGIPREL 401
+ S EI R ++K+ PQ S + + + L
Sbjct: 262 FTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRL 300
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 24 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 73
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 74 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 133
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 134 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE-------------DNEXTAREGAK 180
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E+
Sbjct: 181 FPIKWTAPEAI------------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV 228
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
+ + + Y + P EL++++ C + + RPTF +
Sbjct: 229 IQNLERG------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 269
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 15 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 64
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 65 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 125 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE-------------DNEXTAREGAK 171
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 172 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 218
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 219 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 17 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 66
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 67 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 126
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 127 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX-------------TAREGAK 173
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 174 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 220
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 221 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 262
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 16 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 65
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 66 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 125
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 126 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX-------------TAREGAK 172
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 173 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 219
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 220 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 261
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+KLV++LG G+ EVW + G H+ K + M PD + + +++
Sbjct: 15 LKLVERLGAGQFG--EVWMGYYNG------HTKVAVKSLKQGSMSPDAFLAEANLMKQ-- 64
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVE 256
+ + + + V+ + + GS+ ++ G +LT+ ++L A IA G+
Sbjct: 65 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF 124
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ + +++ +N+L+ + ++D+GLA +++ + +
Sbjct: 125 IEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX-------------TAREGAK 171
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA + + +SD WSFG L E+ T G IP+ G++ E
Sbjct: 172 FPIKWTAPEA------------INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE- 218
Query: 376 YRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
V++N L Y + P EL++++ C + + RPTF +
Sbjct: 219 ---VIQN--LERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 49/292 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVKIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LVM+ G GR+ ++ I
Sbjct: 64 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D +P Y APE ++ K +D PE D WS G L + +GS+P+ G +
Sbjct: 169 LDAFCGAPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 218 LKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 262
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 XMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 73 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 124
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 125 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 184
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 185 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 224
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 225 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 275
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 276 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 323
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 XMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGAVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKD--GDPPLVFALAAGSPECVHALIKR 567
D +TALH AC G E+VE +L Q V V DKD G PL A +AG E V AL+ +
Sbjct: 39 DSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V + + G P H A + + LL GA+P+A D + +HRA AK
Sbjct: 96 GAHVNAVNQNGCTP--LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 628 CAIVILENGGCRSMAILNSKELTPLHL 654
++L S I +++ TPLHL
Sbjct: 154 MVHILLFYKA--STNIQDTEGNTPLHL 178
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 53/237 (22%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLL 601
D+D L +A +AG E V L++ G V + G+ P H+ A G + ++ LL+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--LHIAASAGXDEIVKALLV 94
Query: 602 AGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNV 661
GA NAV+ G + LH A +K + A+++LE G + + T +H A N+
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--DHYDATAMHRAAAKGNL 152
Query: 662 AVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQ 721
++V ILL A Q
Sbjct: 153 --------------------------------------------KMVHILLFYKASTNIQ 168
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLL 778
D + T LH+A VE K ++ G + I N PL V AK +GL+L
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV-----AKGGLGLIL 220
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 650 TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVR 709
T LH + + +V+ +++ P VN D G + L +AA+ D E+V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP---VNDKDDAG--WSPLHIAASAGXD------EIVK 90
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA A + T LH A+ N E+ ++L+ G + + ++ ++ +H A A+G
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHS 829
V +LL A N QD EG+ H+A D ++ E ++L+ A++ + N
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV--EEAKFLVTQ----GASIYIENKE 204
Query: 830 GKT 832
KT
Sbjct: 205 EKT 207
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 588 AYHGQPDCMRELLLAGAD-PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNS 646
AY G+ D ++E +LA D + + LH A + +T+ +L+ G +N
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----VPVND 68
Query: 647 KEL---TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
K+ +PLH+ + +VK + + VN ++ G T L AA+ K HE+
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC--TPLHYAAS-KNRHEI- 121
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLH 763
+LL GA P A+D + TA+H A+ ++++V I+L NI++ PLH
Sbjct: 122 ----AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 764 VALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENL 809
+A L++ GA ++ E +A +I + L
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
EL +L + T D +RTALH A A E+V+ +L GV VN ++ PLH+A
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEV 825
+ G V LL GA N + G H AA +N + VML A +
Sbjct: 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA------SKNRHEIAVMLLEGGANPDA 134
Query: 826 RNHSGKT 832
++H T
Sbjct: 135 KDHYDAT 141
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKD--GDPPLVFALAAGSPECVHALIKR 567
D +TALH AC G E+VE +L Q V V DKD G PL A +AG E V AL+ +
Sbjct: 39 DSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V + + G P H A + + LL GA+P+A D + +HRA AK
Sbjct: 96 GAHVNAVNQNGCTP--LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 628 CAIVILENGGCRSMAILNSKELTPLHL 654
++L S I +++ TPLHL
Sbjct: 154 MVHILLFYKA--STNIQDTEGNTPLHL 178
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 53/237 (22%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLL 601
D+D L +A +AG E V L++ G V + G+ P H+ A G+ + ++ LL+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--LHIAASAGRDEIVKALLV 94
Query: 602 AGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNV 661
GA NAV+ G + LH A +K + A+++LE G + + T +H A N+
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--DHYDATAMHRAAAKGNL 152
Query: 662 AVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQ 721
++V ILL A Q
Sbjct: 153 --------------------------------------------KMVHILLFYKASTNIQ 168
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLL 778
D + T LH+A VE K ++ G + I N PL V AK +GL+L
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV-----AKGGLGLIL 220
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 650 TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVR 709
T LH + + +V+ +++ P VN D G + L +AA+ +D E+V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP---VNDKDDAG--WSPLHIAASAGRD------EIVK 90
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA A + T LH A+ N E+ ++L+ G + + ++ ++ +H A A+G
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHS 829
V +LL A N QD EG+ H+A D ++ E ++L+ A++ + N
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV--EEAKFLVTQ----GASIYIENKE 204
Query: 830 GKT 832
KT
Sbjct: 205 EKT 207
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 588 AYHGQPDCMRELLLAGAD-PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNS 646
AY G+ D ++E +LA D + + LH A + +T+ +L+ G +N
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----VPVND 68
Query: 647 KEL---TPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
K+ +PLH+ + +VK + + VN ++ G T L AA+ K HE+
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAH---VNAVNQNGC--TPLHYAAS-KNRHEI- 121
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLH 763
+LL GA P A+D + TA+H A+ ++++V I+L NI++ PLH
Sbjct: 122 ----AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 764 VALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENL 809
+A L++ GA ++ E +A +I + L
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
EL +L + T D +RTALH A A E+V+ +L GV VN ++ PLH+A
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEV 825
+ G V LL GA N + G H AA +N + VML A +
Sbjct: 81 ASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDA 134
Query: 826 RNHSGKT 832
++H T
Sbjct: 135 KDHYDAT 141
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 93 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 151
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 152 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 199
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 200 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 250
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 251 GRGYLSPDL-SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 304
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 128/298 (42%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 75 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 126
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 186
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL +L+ D + +T+PEA K
Sbjct: 187 KVSDFGLGRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 226
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 227 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 277
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 278 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 325
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 92 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 150
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + S + ++L
Sbjct: 151 SIIHRDLKSNNIFLHEDLTVKIGDFGLATV---------KSRWSGSHQFEQLSGSIL--- 198
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 199 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 249
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 250 GRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 303
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 67 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 125
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 126 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 173
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 174 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 224
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 225 GRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 278
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 114/292 (39%), Gaps = 49/292 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVRIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LVM+ G GR+ ++ I
Sbjct: 64 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D SP Y APE ++ K +D PE D WS G L + +GS+P+ G +
Sbjct: 169 LDEFCGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 218 LKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 262
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 70 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 128
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 129 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 176
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 177 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 227
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 228 GRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 281
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 70 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 128
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 129 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 176
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 177 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 227
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 228 GRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 281
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 46 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 97
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 98 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 157
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 158 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 197
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 198 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 248
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 249 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 296
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 40/258 (15%)
Query: 169 SVAVKKVMIAEEMEPDWLSGQLDNLRRASMWC-------------RNVCTFHGVLRMDSC 215
VAV K+ ++ + + D L+R + C R + H + ++
Sbjct: 76 EVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY 135
Query: 216 LGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L LVM+ G L + G R+ E Y A+I + +H G V +IKP N+LL
Sbjct: 136 LYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILL 195
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+G +C K R + + + +P+Y +PE + V
Sbjct: 196 DRCGHIRLADFG--------SCLKLRADGTVRSL-----VAVGTPDYLSPEILQAVGGGP 242
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRK---LPPQYAS 391
PE D W+ G EM G P+ S E Y +V ++ LP
Sbjct: 243 G-----TGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLP----- 292
Query: 392 IVGVGIPRELWKMIGECL 409
+V G+P E I L
Sbjct: 293 LVDEGVPEEARDFIQRLL 310
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T L++A+ +E+V+++L
Sbjct: 14 LGKKLLEAARAGQDDEV------RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
G DVN + PLH+A G +LL GAD N QD G AF I+
Sbjct: 68 KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DVN ++ + PL++A A G V +LL GAD N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 792 DNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPREWISEDLME 851
H+AA +LE V+L H A V ++ GKT D G E ++E L +
Sbjct: 81 FTPLHLAAFIG-----HLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ D+ G PL A A G E V L+K GA+V +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
GF P H+ A+ G + LL GAD NA D G++ ++ D A ++
Sbjct: 80 GFTP--LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V +LL GA+ A DA T LH+A+ +E+ +++L G DVN ++ ++
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 766 LARGAKSCVGLL 777
+ G + +L
Sbjct: 121 IGNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V ++ G P ++ HG + + LL GAD NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTP--LYLATAHGHLEIVEVLLKNGADVNA 75
Query: 609 VDDEGESVLHRAVAKKYTDCAIVILENGG 637
VD G + LH A + + A V+L++G
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 63 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 114
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 115 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 174
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 175 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 214
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 215 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 265
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 266 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 313
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 56/298 (18%)
Query: 169 SVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
SVA+K KV E+ D+L GQ D+ N+ GV+ + +V +
Sbjct: 46 SVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIRLEGVVTKSKPVMIVTE 97
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
GS+ +++++ + T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 98 XMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVC 157
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ +L+ D + +T+PEA K
Sbjct: 158 KVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTSPEAIAYRK--------- 197
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G L E M G P+ +S +++ +AV + +LPP + P
Sbjct: 198 ---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPP------MDCPA 248
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPS 457
L++++ +C Q + RP F +++ L +L R+P G K TS PS
Sbjct: 249 ALYQLMLDCWQKDRNNRPKFEQIVSI----LDKLIRNP------GSLKIITSAAARPS 296
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 28/237 (11%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 93 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 151
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + SR LS +
Sbjct: 152 SIIHRDLKSNNIFLHEDLTVKIGDFGLA--------------TEKSRWSGSHQFEQLSGS 197
Query: 321 --YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
+ APE + D S +SD ++FG L E+ TG +P++ ++ +
Sbjct: 198 ILWMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF 248
Query: 379 VVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+V L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 249 MVGRGYLSPDL-SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 304
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 63.9 bits (154), Expect = 7e-10, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G+TALHLA R ++ + +LE S + ++ D G PL A++A + LI+ R
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A D
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 629 AIVILENGGCRSMAILNSKELTPLHL 654
A+V+L+NG + M N++E TPL L
Sbjct: 141 AVVLLKNGANKDMQ--NNREETPLFL 164
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 13/221 (5%)
Query: 557 SPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESV 616
+P + I +GA++ ++ + G + H+ A + + D + LL A AD N D+ G +
Sbjct: 3 APAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 617 LHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEI 676
LH AV+ +++ N A ++ TPL L +AV ++ +
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAA---RLAVEGMLEDLINSHAD 117
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
VN +D G +AL V + +LL GA Q+ + T L +A+
Sbjct: 118 VNAVDDLG--------KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
E K++LD + +I + + +P +A R V LL
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 688 TALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-D 746
TAL +AA + + + LL A A+ QD RT LH A A+ + +I++ +
Sbjct: 27 TALHLAARYSRS------DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFH---------- 796
D++ R T PL +A + + L+++ AD N DD G +A H
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 797 ----IAADAAKMIRENLEWLIVML-----SHPDAAVEVRNHSGKTLRDFLEGLPREWISE 847
+ A K ++ N E + L S+ A V + + + + + D ++ LPR+ E
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200
Query: 848 DL 849
+
Sbjct: 201 RM 202
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
Query: 593 PDCMRELLLAGAD-PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTP 651
P + + + GA N D GE+ LH A +D A +LE I ++ TP
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTP 61
Query: 652 LHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRIL 711
LH V+ V + + + + + D P L +AA L VEG ++ L
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTP----LILAARLA----VEG--MLEDL 111
Query: 712 LTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAK 771
+ + A+ A D ++ALH A+ N+V+ ++L G + +++N PL +A G+
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171
Query: 772 SCVGLLLSAGADCNWQD 788
+LL A+ + D
Sbjct: 172 ETAKVLLDHFANRDITD 188
Score = 37.0 bits (84), Expect = 0.082, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D TALH+A+ + + K +L+A D NI++ PLH A++ A+ +L+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 782 A-DCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPD 820
A D + + +G +AA A + LE LI SH D
Sbjct: 82 ATDLDARMHDGTTPLILAARLA--VEGMLEDLIN--SHAD 117
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 28/238 (11%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 65 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 123
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 124 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 171
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 172 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 222
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPP 438
L P S V P+ + +++ ECL+ K +RP F +LA+ ++ L RS P
Sbjct: 223 GRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS----IELLARSLP 275
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 63.9 bits (154), Expect = 7e-10, Method: Composition-based stats.
Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 50/288 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQL----DNL 193
+KLVKKLG G+ EVW + VAVK ++P +S Q NL
Sbjct: 14 IKLVKKLGAGQFG--EVWMGYYNNST-----KVAVKT------LKPGTMSVQAFLEEANL 60
Query: 194 RRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIAR 252
+ + V + V + + + GS+ ++ +EG ++ L +++ + A IA
Sbjct: 61 MKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAE 120
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ + + +++ +N+L+ S ++D+GLA +++ ++
Sbjct: 121 GMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE-------------YTAR 167
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
+ +TAPEA + F + +S+ WSFG L E+ T G IP+ G +
Sbjct: 168 EGAKFPIKWTAPEAI-----NFGCF-------TIKSNVWSFGILLYEIVTYGKIPYPGRT 215
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
++ A+ + ++P P EL+ ++ C + KA +RPTF
Sbjct: 216 NADVMSALSQGYRMPRME------NCPDELYDIMKMCWKEKAEERPTF 257
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 50/319 (15%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRN-------------VCTFHGVLRMDSCL 216
VAV K+ A+++ + + + L+RA C + T H + D+ L
Sbjct: 90 VAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNL 149
Query: 217 GLVMDRCYGSVQLAM-QRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
LVMD G L + + E RL E Y A++ + +H V +IKP N+L+D
Sbjct: 150 YLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMD 209
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
+G ++D+G +C K + + S + + +P+Y +PE + ++
Sbjct: 210 MNGHIRLADFG--------SCLKL---MEDGTVQSSV--AVGTPDYISPEILQAMEGGKG 256
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR---KLPPQYASI 392
+ PE D WS G + EM G P+ S E Y ++ ++ + P Q +
Sbjct: 257 RY-------GPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDV 309
Query: 393 V--GVGIPRELW----KMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTGFT 446
+ R L +G+ K P FS + +R+ E P P S T +
Sbjct: 310 SENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIRNC-EAPYIPEVSSPTDTS 368
Query: 447 KFST------SNETEPSPA 459
F ++ET P P
Sbjct: 369 NFDVDDDCLKNSETMPPPT 387
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 28/237 (11%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 85 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 143
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + SR LS +
Sbjct: 144 SIIHRDLKSNNIFLHEDLTVKIGDFGLA--------------TEKSRWSGSHQFEQLSGS 189
Query: 321 --YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
+ APE + D S +SD ++FG L E+ TG +P++ ++ +
Sbjct: 190 ILWMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF 240
Query: 379 VVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+V L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 241 MVGRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 296
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 65 NILLFMGY-STAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 123
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + S +
Sbjct: 124 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL------------ 171
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD ++FG L E+ TG +P++ ++ + +V
Sbjct: 172 WMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV 222
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
L P + V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 223 GRGYLSPDLSK-VRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 276
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 28/237 (11%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G L +V C GS + + E + + +++ A+G+ LHA
Sbjct: 65 NILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 123
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + SR LS +
Sbjct: 124 SIIHRDLKSNNIFLHEDLTVKIGDFGLA--------------TEKSRWSGSHQFEQLSGS 169
Query: 321 --YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
+ APE + D S +SD ++FG L E+ TG +P++ ++ +
Sbjct: 170 ILWMAPEV---------IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF 220
Query: 379 VVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
+V L P S V P+ + +++ ECL+ K +RP F +LA+ + LP+
Sbjct: 221 MVGRGYLSPD-LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 276
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 63.9 bits (154), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G+TALHLA R ++ + +LE S + ++ D G PL A++A + LI+ R
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A D
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172
Query: 629 AIVILENGGCRSMAILNSKELTPLHL 654
A+V+L+NG + M N++E TPL L
Sbjct: 173 AVVLLKNGANKDMQ--NNREETPLFL 196
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Query: 537 NVDVLDKDGDPPLVFALAAG-------------SPECVHALIKRGANVISRLREGFGPSV 583
+V+V DG PL+ A +G +P + I +GA++ ++ + G +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-TDRTGETA 60
Query: 584 AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAI 643
H+ A + + D + LL A AD N D+ G + LH AV+ +++ N A
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 644 LNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
++ TPL L +AV ++ + VN +D G +AL V
Sbjct: 121 MHDGT-TPLILAA---RLAVEGMLEDLINSHADVNAVDDLG--------KSALHWAAAVN 168
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLH 763
+ +LL GA Q+ + T L +A+ E K++LD + +I + + +P
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228
Query: 764 VALARGAKSCVGLL 777
+A R V LL
Sbjct: 229 IAQERMHHDIVRLL 242
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 688 TALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-D 746
TAL +AA + + + LL A A+ QD RT LH A A+ + +I++ +
Sbjct: 59 TALHLAARYSRS------DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFH---------- 796
D++ R T PL +A + + L+++ AD N DD G +A H
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172
Query: 797 ----IAADAAKMIRENLEWLIVML-----SHPDAAVEVRNHSGKTLRDFLEGLPREWISE 847
+ A K ++ N E + L S+ A V + + + + + D ++ LPR+ E
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 848 DL 849
+
Sbjct: 233 RM 234
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 685 PVGTALCMAAALK---KDHEVEGRELVRILLTAGAEPTAQ-DAQNRTALHIASMANDVEL 740
P+ A C L+ + E + ++ + GA Q D TALH+A+ + +
Sbjct: 13 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72
Query: 741 VKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGA-DCNWQDDEGDNAFHIAA 799
K +L+A D NI++ PLH A++ A+ +L+ A D + + +G +AA
Sbjct: 73 AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Query: 800 DAAKMIRENLEWLIVMLSHPD 820
A + LE LI SH D
Sbjct: 133 RLA--VEGMLEDLIN--SHAD 149
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G+TALHLA R ++ + +LE S + ++ D G PL A++A + LI+ R
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A D
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 173
Query: 629 AIVILENGGCRSMAILNSKELTPLHL 654
A+V+L+NG + M N++E TPL L
Sbjct: 174 AVVLLKNGANKDMQ--NNREETPLFL 197
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Query: 537 NVDVLDKDGDPPLVFALAAG-------------SPECVHALIKRGANVISRLREGFGPSV 583
+V+V DG PL+ A +G +P + I +GA++ ++ + G +
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-TDRTGETA 61
Query: 584 AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAI 643
H+ A + + D + LL A AD N D+ G + LH AV+ +++ N A
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 644 LNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
++ TPL L +AV ++ + VN +D G +AL V
Sbjct: 122 MHDGT-TPLILAA---RLAVEGMLEDLINSHADVNAVDDLG--------KSALHWAAAVN 169
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLH 763
+ +LL GA Q+ + T L +A+ E K++LD + +I + + +P
Sbjct: 170 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 229
Query: 764 VALARGAKSCVGLL 777
+A R V LL
Sbjct: 230 IAQERMHHDIVRLL 243
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 688 TALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-D 746
TAL +AA + + + LL A A+ QD RT LH A A+ + +I++ +
Sbjct: 60 TALHLAARYSRS------DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFH---------- 796
D++ R T PL +A + + L+++ AD N DD G +A H
Sbjct: 114 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 173
Query: 797 ----IAADAAKMIRENLEWLIVML-----SHPDAAVEVRNHSGKTLRDFLEGLPREWISE 847
+ A K ++ N E + L S+ A V + + + + + D ++ LPR+ E
Sbjct: 174 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 233
Query: 848 DL 849
+
Sbjct: 234 RM 235
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 24/233 (10%)
Query: 568 GANVISRLREGFGPSVAHVCAYHG-----------QPDCMRELLLAGAD-PNAVDDEGES 615
G +V R +GF P + C+ G P + + + GA N D GE+
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 616 VLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEE 675
LH A +D A +LE I ++ TPLH V+ V + + + +
Sbjct: 61 ALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 676 IVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMA 735
+ D P L +AA L VEG ++ L+ + A+ A D ++ALH A+
Sbjct: 119 DARMHDGTTP----LILAARLA----VEG--MLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 736 NDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQD 788
N+V+ ++L G + +++N PL +A G+ +LL A+ + D
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 685 PVGTALCMAAALK---KDHEVEGRELVRILLTAGAEPTAQ-DAQNRTALHIASMANDVEL 740
P+ A C L+ + E + ++ + GA Q D TALH+A+ + +
Sbjct: 14 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 73
Query: 741 VKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGA-DCNWQDDEGDNAFHIAA 799
K +L+A D NI++ PLH A++ A+ +L+ A D + + +G +AA
Sbjct: 74 AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 133
Query: 800 DAAKMIRENLEWLIVMLSHPD 820
A + LE LI SH D
Sbjct: 134 RLA--VEGMLEDLIN--SHAD 150
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 62/313 (19%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA- 196
+K ++ LGEG VE+ G VAVK ++P+ + +L++
Sbjct: 23 LKRIRDLGEGHFGKVELCRYDPEGDN--TGEQVAVK------SLKPESGGNHIADLKKEI 74
Query: 197 ----SMWCRNVCTFHGVLRMDSCLG--LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGAD 249
+++ N+ + G+ D G L+M+ GS++ + +N+ ++ L+Q L+Y
Sbjct: 75 EILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQ 134
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA-AILKKPACRKARPECDSSRI 308
I +G+ L + V ++ N+L+++ + + D+GL AI + + DS
Sbjct: 135 ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVF 194
Query: 309 HSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT----GS 364
+C M S Y A SD WSFG TL E+ T S
Sbjct: 195 WYAPECLMQSKFYIA------------------------SDVWSFGVTLHELLTYCDSDS 230
Query: 365 IPWA-----------GLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKA 413
P A ++ + + + ++LP P E+++++ +C +F+
Sbjct: 231 SPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLP------CPPNCPDEVYQLMRKCWEFQP 284
Query: 414 SKRPTFSAMLATF 426
S R +F ++ F
Sbjct: 285 SNRTSFQNLIEGF 297
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 115/299 (38%), Gaps = 63/299 (21%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 8 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVKIIDKTQLNSSSLQKLFRE 56
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLA-------MQRNEGRLTLEQIL 244
+ N+ V+ + L LVM+ G M+ E R QI+
Sbjct: 57 VRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKFRQIV 116
Query: 245 RYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECD 304
V H +V ++K NLLLDA ++D+G + +
Sbjct: 117 S-------AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---------------N 154
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+ +D SP Y APE ++ K +D PE D WS G L + +GS
Sbjct: 155 EFTFGNKLDTFCGSPPYAAPELFQGKK------YD-----GPEVDVWSLGVILYTLVSGS 203
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+P+ G + +E+ V++ + P Y S + ++ + L SKR T ++
Sbjct: 204 LPFDGQNLKELRERVLRGKYRIPFYMST-------DCENLLKKFLILNPSKRGTLEQIM 255
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 34/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T+ ILR ++ G+ LH G + ++K N+LL G ++D+G++A L
Sbjct: 122 TIATILR---EVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGG--- 175
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
D +R + + +P + APE E V+ G ++D WSFG T +
Sbjct: 176 -----DITR-NKVRKTFVGTPCWMAPEVMEQVR-----------GYDFKADIWSFGITAI 218
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG-----VGIPRELWKMIGECLQFKA 413
E+ TG+ P+ ++ ++N PP + V + KMI CLQ
Sbjct: 219 ELATGAAPYHKYPPMKVLMLTLQND--PPSLETGVQDKEMLKKYGKSFRKMISLCLQKDP 276
Query: 414 SKRPTFSAMLATFLRH 429
KRPT A LRH
Sbjct: 277 EKRPT----AAELLRH 288
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 49/292 (16%)
Query: 142 KKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCR 201
+ +G+G GV G +I Q R + A+K + EM+ Q++ R + R
Sbjct: 27 RVIGKGH-FGVVYHGEYIDQAQNRIQ--CAIKSLSRITEMQ------QVEAFLREGLLMR 77
Query: 202 -----NVCTFHGVLRMDSCLGLVM--DRCYGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
NV G++ L V+ C+G + ++ + T++ ++ +G +ARG+
Sbjct: 78 GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGM 137
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPECDSSRIHSCMD 313
L V ++ N +LD S V+D+GLA IL + E S + H
Sbjct: 138 EYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR--------EYYSVQQHRH-- 187
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
L +TA E+ + + + +SD WSFG L E+ T G+ P+ +
Sbjct: 188 -ARLPVKWTALESLQTYR------------FTTKSDVWSFGVLLWELLTRGAPPYRHIDP 234
Query: 373 EEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
++ + + R+LP P+Y P L++++ +C + + RPTF ++
Sbjct: 235 FDLTHFLAQGRRLPQPEYC-------PDSLYQVMQQCWEADPAVRPTFRVLV 279
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 102/235 (43%), Gaps = 24/235 (10%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGS-VQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ F G + D+ L +V C GS + + E + + Q++ A+G+ LHA
Sbjct: 93 NILLFMGYMTKDN-LAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK 151
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K +N+ L + D+GLA + + + + + S +
Sbjct: 152 NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVL------------ 199
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D S +SD +S+G L E+ TG +P++ ++ + +V
Sbjct: 200 WMAPEV---------IRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMV 250
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPR 435
P + + P+ + +++ +C++ +RP F +L++ LP+
Sbjct: 251 GRGYASPDLSKLYK-NCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 62/313 (19%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA- 196
+K ++ LGEG VE+ G VAVK ++P+ + +L++
Sbjct: 11 LKRIRDLGEGHFGKVELCRYDPEGDN--TGEQVAVK------SLKPESGGNHIADLKKEI 62
Query: 197 ----SMWCRNVCTFHGVLRMDSCLG--LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGAD 249
+++ N+ + G+ D G L+M+ GS++ + +N+ ++ L+Q L+Y
Sbjct: 63 EILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQ 122
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA-AILKKPACRKARPECDSSRI 308
I +G+ L + V ++ N+L+++ + + D+GL AI + + DS
Sbjct: 123 ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVF 182
Query: 309 HSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT----GS 364
+C M S Y A SD WSFG TL E+ T S
Sbjct: 183 WYAPECLMQSKFYIA------------------------SDVWSFGVTLHELLTYCDSDS 218
Query: 365 IPWA-----------GLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKA 413
P A ++ + + + ++LP P E+++++ +C +F+
Sbjct: 219 SPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLP------CPPNCPDEVYQLMRKCWEFQP 272
Query: 414 SKRPTFSAMLATF 426
S R +F ++ F
Sbjct: 273 SNRTSFQNLIEGF 285
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G+TALHLA R ++ + +LE S + + D G PL A++A + L++ R
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A D
Sbjct: 81 DLDARMHDGTTPLILAARLALEGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 137
Query: 629 AIVILENGGCRSMAILNSKELTPLHL 654
A+V+L+NG + M N+KE TPL L
Sbjct: 138 AVVLLKNGANKDMQ--NNKEETPLFL 161
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 688 TALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-D 746
TAL +AA + + + LL A A+ QD RT LH A A+ + +I+L +
Sbjct: 24 TALHLAARYSRS------DAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFH---------- 796
D++ R T PL +A + + L+++ AD N DD G +A H
Sbjct: 78 RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 137
Query: 797 ----IAADAAKMIRENLEWLIVML-----SHPDAAVEVRNHSGKTLRDFLEGLPREWISE 847
+ A K ++ N E + L S+ A V + + + + + D ++ LPR+ E
Sbjct: 138 AVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Query: 848 DL 849
+
Sbjct: 198 RM 199
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 12/198 (6%)
Query: 580 GPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCR 639
G + H+ A + + D + LL A AD D+ G + LH AV+ ++L N
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 640 SMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKD 699
A ++ TPL L +A+ ++ + VN +D G +AL
Sbjct: 82 LDARMHDGT-TPLILAA---RLALEGMLEDLINSHADVNAVDDLG--------KSALHWA 129
Query: 700 HEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNT 759
V + +LL GA Q+ + T L +A+ E K++LD + +I + +
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 189
Query: 760 IPLHVALARGAKSCVGLL 777
+P +A R V LL
Sbjct: 190 LPRDIAQERMHHDIVRLL 207
Score = 37.0 bits (84), Expect = 0.091, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 607 NAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKR 666
N D GE+ LH A +D A +LE I ++ TPLH V+ V +
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASA--DAXIQDNMGRTPLHAAVSADAQGVFQI 73
Query: 667 WVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNR 726
+ + + + D P L +AA L +EG ++ L+ + A+ A D +
Sbjct: 74 LLRNRATDLDARMHDGTTP----LILAARLA----LEG--MLEDLINSHADVNAVDDLGK 123
Query: 727 TALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNW 786
+ALH A+ N+V+ ++L G + +++N PL +A G+ +LL A+ +
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 183
Query: 787 QD 788
D
Sbjct: 184 TD 185
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 34/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T+ ILR ++ G+ LH G + ++K N+LL G ++D+G++A L
Sbjct: 117 TIATILR---EVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGG--- 170
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
D +R + + +P + APE E V+ G ++D WSFG T +
Sbjct: 171 -----DITR-NKVRKTFVGTPCWMAPEVMEQVR-----------GYDFKADIWSFGITAI 213
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG-----VGIPRELWKMIGECLQFKA 413
E+ TG+ P+ ++ ++N PP + V + KMI CLQ
Sbjct: 214 ELATGAAPYHKYPPMKVLMLTLQND--PPSLETGVQDKEMLKKYGKSFRKMISLCLQKDP 271
Query: 414 SKRPTFSAMLATFLRH 429
KRPT A LRH
Sbjct: 272 EKRPT----AAELLRH 283
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAM-QRNEGRLTLEQILRYGADIARGVVELH 258
C+ + H + ++ L LVMD G L + + E +L + Y ++ + +H
Sbjct: 133 CQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIH 192
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
V +IKP N+LLD +G ++D+G +C K D + S + + +
Sbjct: 193 QLHYVHRDIKPDNVLLDVNGHIRLADFG--------SCLKMN---DDGTVQSSV--AVGT 239
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
P+Y +PE + ++ + + PE D WS G + EM G P+ S E Y
Sbjct: 240 PDYISPEILQAMEDGMGKY-------GPECDWWSLGVCMYEMLYGETPFYAESLVETYGK 292
Query: 379 VVKNRK 384
++ + +
Sbjct: 293 IMNHEE 298
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAM-QRNEGRLTLEQILRYGADIARGVVELH 258
C+ + H + ++ L LVMD G L + + E +L + Y ++ + +H
Sbjct: 149 CQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIH 208
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
V +IKP N+LLD +G ++D+G +C K D + S + + +
Sbjct: 209 QLHYVHRDIKPDNVLLDVNGHIRLADFG--------SCLKMN---DDGTVQSSV--AVGT 255
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
P+Y +PE + ++ + + PE D WS G + EM G P+ S E Y
Sbjct: 256 PDYISPEILQAMEDGMGKY-------GPECDWWSLGVCMYEMLYGETPFYAESLVETYGK 308
Query: 379 VVKNRK 384
++ + +
Sbjct: 309 IMNHEE 314
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 40/290 (13%)
Query: 152 VEVWGAWIGGGQGRCRH----SVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFH 207
VE+ G G + RH +A KVM E + + +++ L++ S RN+ T++
Sbjct: 29 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHH-RNIATYY 87
Query: 208 GVL------RMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRY-GADIARGVVELHA 259
G MD L LVM+ C GSV ++ +G E+ + Y +I RG+ LH
Sbjct: 88 GAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ 147
Query: 260 AGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSP 319
V+ +IK N+LL + + D+G++A L + R+ + + +P
Sbjct: 148 HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR--------------NTFIGTP 193
Query: 320 NYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAV 379
+ APE ++ + +D +SD WS G T +EM G+ P + +
Sbjct: 194 YWMAPEVI-ACDENPDATYD------FKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLI 246
Query: 380 VKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRP-TFSAMLATFLR 428
+N P+ S ++ I CL S+RP T M F+R
Sbjct: 247 PRNP--APRLKS---KKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIR 291
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 47/323 (14%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+++ VK LG G G G WI G+ + VA+K ++ E P LD
Sbjct: 18 ELRKVKVLGSGA-FGTVYKGIWIPDGEN-VKIPVAIK--VLRENTSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
A + V G+ + + YG + ++ N GRL + +L + IA+G+
Sbjct: 74 AGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKGMS 133
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ + ++D+GLA +L + D + H
Sbjct: 134 YLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLL----------DIDETEYH------ 177
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ P W ++ L + + +SD WS+G T+ E+ T G+ P+ G+ A E
Sbjct: 178 --ADGGKVPIKWMALESILRRRF------THQSDVWSYGVTVWELMTFGAKPYDGIPARE 229
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
I + K +LP P +I I + W + EC RP F +++ F R ++
Sbjct: 230 IPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSEC-------RPRFRELVSEFSRMARDP 282
Query: 434 PRSP--------PASP-DTGFTK 447
R PASP D+ F +
Sbjct: 283 QRFVVIQNEDLGPASPLDSTFYR 305
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 33/223 (14%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
+V FHG D + +V++ C L + + +T + + +GV LH
Sbjct: 103 HVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++K NL L+ + D+GLA + E D R + +PNY
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKI----------EFDGERKKTLCG----TPNY 208
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE KK G S E D WS GC L + G P+ +E Y + K
Sbjct: 209 IAPEVL--CKK----------GHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKK 256
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
N P++ + V + R + L + RP+ + +L
Sbjct: 257 NEYSVPRHINPVASALIRRM-------LHADPTLRPSVAELLT 292
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
+V FHG D + +V++ C L + + +T + + +GV LH
Sbjct: 87 HVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHNNR 146
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++K NL L+ + D+GLA + E D R +PNY
Sbjct: 147 VIHRDLKLGNLFLNDDMDVKIGDFGLATKI----------EFDGERKKDLCG----TPNY 192
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE KK G S E D WS GC L + G P+ +E Y + K
Sbjct: 193 IAPEVL--CKK----------GHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKK 240
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
N P++ + V + R + L + RP+ + +L
Sbjct: 241 NEYSVPRHINPVASALIRRM-------LHADPTLRPSVAELLT 276
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 32/233 (13%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
D L++ +G G A V + R VKK ++ ++ + DW+ + +
Sbjct: 9 QDFDLLRVIGRGSYAKVLLVRL---KKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 65
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS + H + +S L V++ G + + + +L E Y A+I+ +
Sbjct: 66 ASNHPF-LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALN 124
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA-RPECDSSRIHSCMDC 314
LH G++ ++K N+LLD+ G ++DYG+ C++ RP +S C
Sbjct: 125 YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM--------CKEGLRPGDTTSXF-----C 171
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+PNY APE ++ W W+ G + EM G P+
Sbjct: 172 G--TPNYIAPEILRGEDYGFSVDW------------WALGVLMFEMMAGRSPF 210
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 32/233 (13%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
D L++ +G G A V + R VKK ++ ++ + DW+ + +
Sbjct: 5 QDFDLLRVIGRGSYAKVLLVRL---KKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 61
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS + H + +S L V++ G + + + +L E Y A+I+ +
Sbjct: 62 ASNHPF-LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALN 120
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA-RPECDSSRIHSCMDC 314
LH G++ ++K N+LLD+ G ++DYG+ C++ RP +S C
Sbjct: 121 YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM--------CKEGLRPGDTTSXF-----C 167
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+PNY APE ++ W W+ G + EM G P+
Sbjct: 168 G--TPNYIAPEILRGEDYGFSVDW------------WALGVLMFEMMAGRSPF 206
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
+V FHG D + +V++ C L + + +T + + +GV LH
Sbjct: 103 HVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++K NL L+ + D+GLA + E D R +PNY
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKI----------EFDGERKKDLCG----TPNY 208
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE KK G S E D WS GC L + G P+ +E Y + K
Sbjct: 209 IAPEVL--CKK----------GHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKK 256
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
N P++ + V + R + L + RP+ + +L
Sbjct: 257 NEYSVPRHINPVASALIRRM-------LHADPTLRPSVAELLT 292
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 119/292 (40%), Gaps = 43/292 (14%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
H D+ L +++G G +G G VAVK E + PD + L R
Sbjct: 113 HEDLVLGEQIGRGN------FGEVFSGRLRADNTLVAVKSC--RETLPPDLKAKFLQEAR 164
Query: 195 RASMWCR-NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIAR 252
+ N+ GV + +VM+ G L R EG RL ++ +L+ D A
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAA 224
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ L + + ++ N L+ +SD+G+ +R E D S
Sbjct: 225 GMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGM-----------SREEADGVXAASG- 272
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
+ +TAPEA + S ESD WSFG L E + G+ P+ LS
Sbjct: 273 GLRQVPVKWTAPEALNYGR------------YSSESDVWSFGILLWETFSLGASPYPNLS 320
Query: 372 AEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
++ V K +LP P+ P +++++ +C ++ +RP+FS +
Sbjct: 321 NQQTREFVEKGGRLPCPELC-------PDAVFRLMEQCWAYEPGQRPSFSTI 365
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
+V FHG D + +V++ C L + + +T + + +GV LH
Sbjct: 103 HVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++K NL L+ + D+GLA + E D R +PNY
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKI----------EFDGERKKXLCG----TPNY 208
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE KK G S E D WS GC L + G P+ +E Y + K
Sbjct: 209 IAPEVL--CKK----------GHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKK 256
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
N P++ + V + R + L + RP+ + +L
Sbjct: 257 NEYSVPRHINPVASALIRRM-------LHADPTLRPSVAELLT 292
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 48/283 (16%)
Query: 164 GRCRHSVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCL 216
G+ VA+K K E+ D+LS GQ D+ NV GV+ + +
Sbjct: 58 GKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH--------PNVIHLEGVVTKSTPV 109
Query: 217 GLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
++ + GS+ +++N+G+ T+ Q++ IA G+ L V ++ N+L++
Sbjct: 110 MIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVN 169
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
++ VSD+GL+ L+ +I +TAPEA + K
Sbjct: 170 SNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKI---------PIRWTAPEAIQYRK---- 216
Query: 336 LFWDDAIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
+ SD WS+G + E M G P+ ++ +++ A+ ++ +LPP
Sbjct: 217 --------FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPP------ 262
Query: 395 VGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
+ P L +++ +C Q + RP F ++ T L ++ R+P
Sbjct: 263 MDCPSALHQLMLDCWQKDRNHRPKFGQIVNT----LDKMIRNP 301
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 34/221 (15%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
GS+ +++N+GR T+ Q++ I G+ L V ++ N+L++++ VSD
Sbjct: 94 GSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSD 153
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+G++ +L+ D + +TAPEA K
Sbjct: 154 FGMSRVLE-----------DDPEAAYTTRGGKIPIRWTAPEAIAYRK------------F 190
Query: 345 SPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK 403
+ SD WS+G + E M G P+ +S +++ +A+ + +LPP + P L +
Sbjct: 191 TSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPP------MDCPIALHQ 244
Query: 404 MIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTG 444
++ +C Q + S RP F + + L +L R+P + TG
Sbjct: 245 LMLDCWQKERSDRPKFGQI----VNMLDKLIRNPNSLKRTG 281
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 34/221 (15%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
GS+ +++N+GR T+ Q++ I G+ L V ++ N+L++++ VSD
Sbjct: 115 GSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSD 174
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+G++ +L+ D + +TAPEA K
Sbjct: 175 FGMSRVLE-----------DDPEAAYTTRGGKIPIRWTAPEAIAYRK------------F 211
Query: 345 SPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK 403
+ SD WS+G + E M G P+ +S +++ +A+ + +LPP + P L +
Sbjct: 212 TSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPP------MDCPIALHQ 265
Query: 404 MIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTG 444
++ +C Q + S RP F + + L +L R+P + TG
Sbjct: 266 LMLDCWQKERSDRPKFGQI----VNMLDKLIRNPNSLKRTG 302
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 32/233 (13%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
D L++ +G G A V + R VKK ++ ++ + DW+ + +
Sbjct: 52 QDFDLLRVIGRGSYAKVLLVRL---KKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQ 108
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS + H + +S L V++ G + MQR + +L E Y A+I+ +
Sbjct: 109 ASNHPF-LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLAL 166
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
LH G++ ++K N+LLD+ G ++DYG+ C++ D++ C
Sbjct: 167 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM--------CKEGLRPGDTTSTF----C 214
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+PNY APE ++ W W+ G + EM G P+
Sbjct: 215 G--TPNYIAPEILRGEDYGFSVDW------------WALGVLMFEMMAGRSPF 253
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 15 LKFLRQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 70
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 71 LQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGM 130
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 131 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 185
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 186 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 226
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 227 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 285
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 119/292 (40%), Gaps = 43/292 (14%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
H D+ L +++G G +G G VAVK E + PD + L R
Sbjct: 113 HEDLVLGEQIGRGN------FGEVFSGRLRADNTLVAVKSC--RETLPPDLKAKFLQEAR 164
Query: 195 RASMWCR-NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-RLTLEQILRYGADIAR 252
+ N+ GV + +VM+ G L R EG RL ++ +L+ D A
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAA 224
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ L + + ++ N L+ +SD+G+ +R E D S
Sbjct: 225 GMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGM-----------SREEADGVYAASG- 272
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
+ +TAPEA + S ESD WSFG L E + G+ P+ LS
Sbjct: 273 GLRQVPVKWTAPEALNYGR------------YSSESDVWSFGILLWETFSLGASPYPNLS 320
Query: 372 AEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
++ V K +LP P+ P +++++ +C ++ +RP+FS +
Sbjct: 321 NQQTREFVEKGGRLPCPELC-------PDAVFRLMEQCWAYEPGQRPSFSTI 365
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 34/234 (14%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
D L++ +G G A V + R VKK ++ ++ + DW+ + +
Sbjct: 20 QDFDLLRVIGRGSYAKVLLVRL---KKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 76
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS + H + +S L V++ G + MQR + +L E Y A+I+ +
Sbjct: 77 ASNHPF-LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLAL 134
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA-RPECDSSRIHSCMD 313
LH G++ ++K N+LLD+ G ++DYG+ C++ RP +S
Sbjct: 135 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM--------CKEGLRPGDTTSXF----- 181
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
C +PNY APE ++ W W+ G + EM G P+
Sbjct: 182 CG--TPNYIAPEILRGEDYGFSVDW------------WALGVLMFEMMAGRSPF 221
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 12 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 67
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 68 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 127
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 128 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 182
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 183 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 223
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 224 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 282
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 19 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 74
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 75 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 134
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 135 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 189
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 190 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 230
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 231 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 289
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 17 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 72
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 73 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 132
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 133 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 187
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 188 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 228
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 229 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 287
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 34/221 (15%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
GS+ +++N+GR T+ Q++ I G+ L V ++ N+L++++ VSD
Sbjct: 100 GSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSD 159
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+G++ +L+ D + +TAPEA K
Sbjct: 160 FGMSRVLE-----------DDPEAAYTTRGGKIPIRWTAPEAIAYRK------------F 196
Query: 345 SPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK 403
+ SD WS+G + E M G P+ +S +++ +A+ + +LPP + P L +
Sbjct: 197 TSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPP------MDCPIALHQ 250
Query: 404 MIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTG 444
++ +C Q + S RP F + + L +L R+P + TG
Sbjct: 251 LMLDCWQKERSDRPKFGQI----VNMLDKLIRNPNSLKRTG 287
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 34/273 (12%)
Query: 147 GRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCR-NVCT 205
G GV +G G H VAVK + + D + ++ ++ ++
Sbjct: 21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIK 80
Query: 206 FHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCM 265
+ V+ S + +VM+ G GRL ++ R I GV H VV
Sbjct: 81 LYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHR 140
Query: 266 NIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPE 325
++KP N+LLDA A ++D+GL+ ++ R C SPNY APE
Sbjct: 141 DLKPENVLLDAHMNAKIADFGLSNMMSDGEF--LRXSCG-------------SPNYAAPE 185
Query: 326 AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKL 385
+ PE D WS G L + G++P+ +++ +
Sbjct: 186 VIS-----------GRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFY 234
Query: 386 PPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
PQY + + + + + LQ KR T
Sbjct: 235 TPQYLNPSVISLLKHM-------LQVDPMKRAT 260
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 18 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 73
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 74 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 133
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 134 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 188
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 189 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 229
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 230 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 288
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 15 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 70
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 71 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 130
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 131 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 185
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 186 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 226
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 227 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 285
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 42/200 (21%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA----AILKK 293
L+ +Q+L + AD+ARG+ L + N+ N+L+ + A ++D+GL+ +KK
Sbjct: 136 LSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKK 195
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
R P W ++ SLN + SD WS+
Sbjct: 196 TMGR-------------------------LPVRWMAIE-SLNY-----SVYTTNSDVWSY 224
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
G L E+ + G P+ G++ E+Y KLP Y + E++ ++ +C + K
Sbjct: 225 GVLLWEIVSLGGTPYCGMTCAELYE------KLPQGYRLEKPLNCDDEVYDLMRQCWREK 278
Query: 413 ASKRPTFSAMLATFLRHLQE 432
+RP+F+ +L + R L+E
Sbjct: 279 PYERPSFAQILVSLNRMLEE 298
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 30 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 85
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 86 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 145
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 146 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 200
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 201 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 241
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 242 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 300
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 43 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 98
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 99 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 158
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 159 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 213
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 214 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 254
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 255 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 313
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 16 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 71
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+Y + I +G+
Sbjct: 72 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM 131
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 132 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 186
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 187 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 227
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 228 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 286
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 17 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 72
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 73 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGM 131
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 182
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 183 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 227
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 274
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 154/369 (41%), Gaps = 66/369 (17%)
Query: 131 EVGVHHD---VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLS 187
++ + HD +LVK +G G +G + VAVK + E+++ + +
Sbjct: 10 DLPIMHDSDRYELVKDIGSGN------FGVARLMRDKQSNELVAVKYIERGEKIDEN-VK 62
Query: 188 GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYG 247
++ N R S+ N+ F V+ + L +VM+ G N GR + ++ +
Sbjct: 63 REIINHR--SLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFF 120
Query: 248 ADIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECDS 305
+ GV HA V ++K N LLD S R + D+G + S
Sbjct: 121 QQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSK---------------S 165
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
S +HS T+ +P Y APE +KK +D + +D WS G TL M G+
Sbjct: 166 SVLHSQPKSTVGTPAYIAPEVL--LKKE----YDGKV-----ADVWSCGVTLYVMLVGAY 214
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLAT 425
P+ + +R + +R L QYA V I E +I +KR + +
Sbjct: 215 PFEDPEEPKNFRKTI-HRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISIPEIRNH 273
Query: 426 --FLRHLQELPRSPPA---SPDTGFTKFSTSNETEPSPASDVEVFQDNPNNLHQLVSEGD 480
FL++L PA + +T T+F+ S++ P +E + Q+++E
Sbjct: 274 EWFLKNL-------PADLMNDNTMTTQFAASDQ----PGQSIE-------EIMQIIAEAT 315
Query: 481 V--SGVRDL 487
V +G ++L
Sbjct: 316 VPPAGTQNL 324
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 17 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 72
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 73 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 131
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 182
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 183 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 227
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 274
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G TALHLA ++ + +LE S + ++ D G PL A++A + LI+ R
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A D
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172
Query: 629 AIVILENGGCRSMAILNSKELTPLHL 654
A+V+L+NG + M N++E TPL L
Sbjct: 173 AVVLLKNGANKDMQ--NNREETPLFL 196
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 26/254 (10%)
Query: 537 NVDVLDKDGDPPLVFALAAG-------------SPECVHALIKRGANVISRLREGFGPSV 583
+V+V DG PL+ A +G +P + I +GA++ ++ + G +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-TDRTGATA 60
Query: 584 AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAI 643
H+ A + + D + LL A AD N D+ G + LH AV+ +++ N A
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 644 LNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
++ TPL L +AV ++ + VN +D G +AL V
Sbjct: 121 MHDGT-TPLILAA---RLAVEGMLEDLINSHADVNAVDDLG--------KSALHWAAAVN 168
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLH 763
+ +LL GA Q+ + T L +A+ E K++LD + +I + + +P
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228
Query: 764 VALARGAKSCVGLL 777
+A R V LL
Sbjct: 229 IAQERMHHDIVRLL 242
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 26/183 (14%)
Query: 687 GTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL- 745
TAL +AAA + + + LL A A+ QD RT LH A A+ + +I++
Sbjct: 58 ATALHLAAAYSRS------DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFH--------- 796
+ D++ R T PL +A + + L+++ AD N DD G +A H
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 797 -----IAADAAKMIRENLEWLIVML-----SHPDAAVEVRNHSGKTLRDFLEGLPREWIS 846
+ A K ++ N E + L S+ A V + + + + + D ++ LPR+
Sbjct: 172 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Query: 847 EDL 849
E +
Sbjct: 232 ERM 234
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 685 PVGTALCMAAALK---KDHEVEGRELVRILLTAGAEPTAQ-DAQNRTALHIASMANDVEL 740
P+ A C L+ + E + ++ + GA Q D TALH+A+ + +
Sbjct: 13 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDA 72
Query: 741 VKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGA-DCNWQDDEGDNAFHIAA 799
K +L+A D NI++ PLH A++ A+ +L+ A D + + +G +AA
Sbjct: 73 AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Query: 800 DAAKMIRENLEWLIVMLSHPD 820
A + LE LI SH D
Sbjct: 133 RLA--VEGMLEDLIN--SHAD 149
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 130
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 131 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 181
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 182 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 226
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 227 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 273
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 20 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 75
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 76 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 134
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 135 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 185
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 186 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 230
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 231 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 277
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME-PDWLSGQLDNLRR 195
D LV+ LGEG V++ +VAVK V + ++ P+ + ++ +
Sbjct: 8 DWDLVQTLGEGAYGEVQL------AVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKM 61
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ NV F+G R + L ++ C G + + R+ + GVV
Sbjct: 62 LNH--ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
LH G+ +IKP NLLLD +SD+GLA + + + R+ + M T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKMXGT 170
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ Y APE L P D WS G L M G +PW
Sbjct: 171 L---PYVAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 19 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 74
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 75 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 133
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 134 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 184
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 185 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 229
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 230 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 276
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME-PDWLSGQLDNLRR 195
D LV+ LGEG V++ +VAVK V + ++ P+ + ++ +
Sbjct: 7 DWDLVQTLGEGAYGEVQL------AVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKM 60
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ NV F+G R + L ++ C G + + R+ + GVV
Sbjct: 61 LNH--ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 118
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
LH G+ +IKP NLLLD +SD+GLA + + + R+ + M T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKMXGT 169
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ Y APE L P D WS G L M G +PW
Sbjct: 170 L---PYVAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 18 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 74 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 132
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 133 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 183
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 184 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 228
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 229 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 275
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 125/283 (44%), Gaps = 50/283 (17%)
Query: 164 GRCRHSVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCL 216
G+ VA+K KV E+ D+L GQ D+ N+ GV+ +
Sbjct: 47 GKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDH--------PNIIHLEGVVTKSKPV 98
Query: 217 GLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
+V + GS+ +++N+G+ T+ Q++ I+ G+ L G V ++ N+L++
Sbjct: 99 MIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILIN 158
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
++ VSD+GL+ +L+ D + +TAPEA K
Sbjct: 159 SNLVCKVSDFGLSRVLE-----------DDPEAAYTTRGGKIPIRWTAPEAIAFRK---- 203
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
+ SD WS+G + E+ + G P+ ++ +++ +AV + +LP
Sbjct: 204 --------FTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRLPSP------ 249
Query: 395 VGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
+ P L++++ +C Q + + RP F + + L +L R+P
Sbjct: 250 MDCPAALYQLMLDCWQKERNSRPKFDEI----VNMLDKLIRNP 288
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M T+ Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKMXGTL---PY 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 41/292 (14%)
Query: 130 IEVGVHHD---VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWL 186
+++ + HD +LVK +G G +G + VAVK + E+++ + +
Sbjct: 10 MDLPIMHDSDRYELVKDIGAGN------FGVARLMRDKQANELVAVKYIERGEKIDEN-V 62
Query: 187 SGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRY 246
++ N R S+ N+ F V+ + L +VM+ G N GR + ++ +
Sbjct: 63 KREIINHR--SLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFF 120
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECD 304
+ GV HA V ++K N LLD S R ++D+G +
Sbjct: 121 FQQLISGVSYAHAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSK--------------- 165
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+S +HS + +P Y APE +KK +D + +D WS G TL M G+
Sbjct: 166 ASVLHSQPKSAVGTPAYIAPEVL--LKKE----YDGKV-----ADVWSCGVTLYVMLVGA 214
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
P+ + +R + +R L QYA V I E +I +KR
Sbjct: 215 YPFEDPEEPKNFRKTI-HRILNVQYAIPDYVHISPECRHLISRIFVADPAKR 265
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 48/283 (16%)
Query: 164 GRCRHSVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCL 216
G+ VA+K K E+ D+LS GQ D+ NV GV+ + +
Sbjct: 32 GKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH--------PNVIHLEGVVTKSTPV 83
Query: 217 GLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
++ + GS+ +++N+G+ T+ Q++ IA G+ L V + N+L++
Sbjct: 84 MIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILVN 143
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
++ VSD+GL+ L+ +I +TAPEA + K
Sbjct: 144 SNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKI---------PIRWTAPEAIQYRK---- 190
Query: 336 LFWDDAIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
+ SD WS+G + E M G P+ ++ +++ A+ ++ +LPP
Sbjct: 191 --------FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPP------ 236
Query: 395 VGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
+ P L +++ +C Q + RP F ++ T L ++ R+P
Sbjct: 237 MDCPSALHQLMLDCWQKDRNHRPKFGQIVNT----LDKMIRNP 275
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 55/309 (17%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKV-MIAEEMEPDWLSGQLDNLRR 195
D++ + +LG G VE + GQ +AVK++ E L LD R
Sbjct: 52 DLEPIMELGRGAYGVVEKM-RHVPSGQ-----IMAVKRIRATVNSQEQKRLLMDLDISMR 105
Query: 196 ASMWCRNVCTFHGVLRMDS----CLGLV---MDRCYGSVQLAMQRNEGRLTLEQIL-RYG 247
++ C TF+G L + C+ L+ +D+ Y V ++G+ E IL +
Sbjct: 106 -TVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQV-----IDKGQTIPEDILGKIA 159
Query: 248 ADIARGVVELHAA-GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
I + + LH+ V+ ++KPSN+L++A G+ + D+G++ L + C
Sbjct: 160 VSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKP- 218
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE P LN G S +SD WS G T++E+ P
Sbjct: 219 --------------YMAPERINP---ELN-----QKGYSVKSDIWSLGITMIELAILRFP 256
Query: 367 WA--GLSAEEIYRAVVK-NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ G +++ + V + + +LP S E +CL+ + +RPT+ ++
Sbjct: 257 YDSWGTPFQQLKQVVEEPSPQLPADKFS-------AEFVDFTSQCLKKNSKERPTYPELM 309
Query: 424 ATFLRHLQE 432
L E
Sbjct: 310 QHPFFTLHE 318
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGICLTSTVQLITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 182 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 273
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 130 IEVGVHHD---VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWL 186
+++ + HD +LVK +G G +G + VAVK + E++ + +
Sbjct: 10 MDLPIMHDSDRYELVKDIGSGN------FGVARLMRDKQSNELVAVKYIERGEKIAAN-V 62
Query: 187 SGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRY 246
++ N R S+ N+ F V+ + L +VM+ G N GR + ++ +
Sbjct: 63 KREIINHR--SLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFF 120
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECD 304
+ GV HA V ++K N LLD S R + D+G +
Sbjct: 121 FQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSK--------------- 165
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
SS +HS T+ +P Y APE +KK +D + +D WS G TL M G+
Sbjct: 166 SSVLHSQPKSTVGTPAYIAPEVL--LKKE----YDGKV-----ADVWSCGVTLYVMLVGA 214
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
P+ + +R + +R L QYA V I E +I +KR
Sbjct: 215 YPFEDPEEPKNFRKTI-HRILNVQYAIPDYVHISPECRHLISRIFVADPAKR 265
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 47/245 (19%)
Query: 200 CRNVCTFHGVLRMDS----CLGLV---MDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIA 251
C TF+G L + C+ L+ +D+ Y V ++G+ E IL + I
Sbjct: 65 CPFTVTFYGALFREGDVWICMELMDTSLDKFYKQV-----IDKGQTIPEDILGKIAVSIV 119
Query: 252 RGVVELHAA-GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
+ + LH+ V+ ++KPSN+L++A G+ + D+G++ L + C
Sbjct: 120 KALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKP----- 174
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWA-- 368
Y APE P LN G S +SD WS G T++E+ P+
Sbjct: 175 ----------YMAPERINP---ELN-----QKGYSVKSDIWSLGITMIELAILRFPYDSW 216
Query: 369 GLSAEEIYRAVVK-NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFL 427
G +++ + V + + +LP S E +CL+ + +RPT+ ++
Sbjct: 217 GTPFQQLKQVVEEPSPQLPADKFS-------AEFVDFTSQCLKKNSKERPTYPELMQHPF 269
Query: 428 RHLQE 432
L E
Sbjct: 270 FTLHE 274
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 36/234 (15%)
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD 249
L NLR +++C + VL + + +V++ C G ++ RL+ E+
Sbjct: 62 LKNLRH-----QHICQLYHVLETANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVFRQ 116
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
I V +H+ G ++KP NLL D + + D+GL A KP K +
Sbjct: 117 IVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDFGLCA---KPKGNK------DYHLQ 167
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+C C L+ Y APE + KS + E+D WS G L + G +P+
Sbjct: 168 TC--CGSLA--YAAPELIQ--GKSY---------LGSEADVWSMGILLYVLMCGFLPFDD 212
Query: 370 LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ +Y+ +++ + P++ S + + +++ LQ KR + +L
Sbjct: 213 DNVMALYKKIMRGKYDVPKWLSPSSILLLQQM-------LQVDPKKRISMKNLL 259
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M T+ Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKMXGTL---PY 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 41 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 96
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 97 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 156
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 157 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 206
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 207 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 252
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 253 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 298
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 45/224 (20%)
Query: 211 RMDSCLGLVMDRCYG----SVQLAMQRNEGRLTLEQILRYGADIARGVVELH-----AAG 261
R ++ L +VM+ C G SV + L E +LR + + E H
Sbjct: 77 RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHT 136
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++KP+N+ LD + D+GLA IL D+S + + +P Y
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNH----------DTSFAKTFVG----TPYY 182
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV- 380
+PE + + + +SD WS GC L E+C P+ S +E+ +
Sbjct: 183 MSPEQM------------NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIRE 230
Query: 381 -KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
K R++P +Y+ EL ++I L K RP+ +L
Sbjct: 231 GKFRRIPYRYSD--------ELNEIITRMLNLKDYHRPSVEEIL 266
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME-PDWLSGQLDNLRR 195
D LV+ LGEG V++ +VAVK V + ++ P+ + ++
Sbjct: 8 DWDLVQTLGEGAYGEVQL------AVNRVTEEAVAVKIVDMKRAVDCPENIKKEI--CIN 59
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
A + NV F+G R + L ++ C G + + R+ + GVV
Sbjct: 60 AMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
LH G+ +IKP NLLLD +SD+GLA + + + R+ + M C
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CG 169
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
L Y APE L P D WS G L M G +PW
Sbjct: 170 TLP--YVAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 22 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 77
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 78 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 137
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 138 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 187
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 188 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 233
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 234 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 279
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 45/224 (20%)
Query: 211 RMDSCLGLVMDRCYG----SVQLAMQRNEGRLTLEQILRYGADIARGVVELH-----AAG 261
R ++ L +VM+ C G SV + L E +LR + + E H
Sbjct: 77 RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHT 136
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++KP+N+ LD + D+GLA IL D+S + + +P Y
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNH----------DTSFAKAFVG----TPYY 182
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV- 380
+PE + + + +SD WS GC L E+C P+ S +E+ +
Sbjct: 183 MSPEQM------------NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIRE 230
Query: 381 -KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
K R++P +Y+ EL ++I L K RP+ +L
Sbjct: 231 GKFRRIPYRYSD--------ELNEIITRMLNLKDYHRPSVEEIL 266
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 19 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 74
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 75 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 134
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 135 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 184
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 185 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 230
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 231 ISSILEKGERLPQPPICTI-------DVYMIMRKCWMIDADSRPKFRELIIEF 276
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 182 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 273
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M T+ Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKMXGTL---PY 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 23 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 78
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 79 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 138
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 139 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 188
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 189 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 234
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 235 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 280
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 182 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 ISSILEKGERLPQPPICTI-------DVYMIMRKCWMIDADSRPKFRELIIEF 273
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G++AL LA A L EY ++ L+ A +G+ E + AL+ N
Sbjct: 4 GKSALDLADPSAKAVLTG---EYKKDE-----------LLEAARSGNEEKLMALLTP-LN 48
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAI 630
V +G + H+ A + + ++ LL GAD +A D G LH A + + +
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 631 VILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTAL 690
++L++G C + ++ + TPLH + V V + + +VN G +
Sbjct: 109 LLLKHGAC--VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDM 163
Query: 691 CMAAALKK--DHEVEGRELVRILLTAGAEPTA-----------QDAQNRTALH--IASM- 734
L++ +E +G L++ A Q + TALH +AS+
Sbjct: 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223
Query: 735 ANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNA 794
++ +++L G +VN +N PLHVA R + +L GA N D G A
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 795 FHIAADAAKM 804
H AA A +
Sbjct: 284 LHRAALAGHL 293
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 31/308 (10%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G+ E + A+L N D PL A V L++ GA+V ++ +
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G P + + C+Y G + LL GA NA+D + LH A +K + ++L +G
Sbjct: 91 GLVP-LHNACSY-GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 638 CRSMAILNSK---ELTP----------------LHLCVATWNVAVVKRWVEVASPEEIVN 678
++ + K ++ P L ++A VK+ + + EI+N
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL----EIIN 204
Query: 679 VIDIPGPVGTAL-CMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAND 737
P TAL C A+L +++ +LL GA ++ T LH+A+
Sbjct: 205 -FKQPQSHETALHCAVASLHPKR----KQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 738 VELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHI 797
++++++ G +N + LH A G LLLS G+D + +G A +
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
Query: 798 AADAAKMI 805
+A + I
Sbjct: 320 GNEAVQQI 327
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 678 NVIDIPGPVGTALCMAAALKKDHEVEG------RELVRILLTAGAEPTAQDAQNRTALHI 731
+ +D+ P A+ + KKD +E +L+ +L A D + T LH+
Sbjct: 6 SALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ N V +V+++L G DV+ ++ +PLH A + G LLL GA N D
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 792 DNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDFL------EGLPREWI 845
H AA + +E ++LSH V H GK+ D E L E+
Sbjct: 125 FTPLHEAAS-----KNRVEVCSLLLSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFK 178
Query: 846 SEDLMEA 852
L++A
Sbjct: 179 GHSLLQA 185
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME-PDWLSGQLDNLRR 195
D LV+ LGEG V++ +VAVK V + ++ P+ + ++ +
Sbjct: 7 DWDLVQTLGEGAYGEVQL------AVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKM 60
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
+ NV F+G R + L ++ C G + + R+ + GVV
Sbjct: 61 LNH--ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 118
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
LH G+ +IKP NLLLD +SD+GLA + + + R+ + M C
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CG 168
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
L Y APE L P D WS G L M G +PW
Sbjct: 169 TLP--YVAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 19 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 74
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 75 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 134
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 135 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 184
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 185 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 230
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 231 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 276
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 18 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 74 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 133
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 134 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 183
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 184 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 229
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 230 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 275
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 42/200 (21%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA----AILKK 293
L+ +Q+L + AD+ARG+ L + ++ N+L+ + A ++D+GL+ +KK
Sbjct: 139 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK 198
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
R P W ++ SLN + SD WS+
Sbjct: 199 TMGR-------------------------LPVRWMAIE-SLNY-----SVYTTNSDVWSY 227
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
G L E+ + G P+ G++ E+Y KLP Y + E++ ++ +C + K
Sbjct: 228 GVLLWEIVSLGGTPYCGMTCAELYE------KLPQGYRLEKPLNCDDEVYDLMRQCWREK 281
Query: 413 ASKRPTFSAMLATFLRHLQE 432
+RP+F+ +L + R L+E
Sbjct: 282 PYERPSFAQILVSLNRMLEE 301
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 42/200 (21%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA----AILKK 293
L+ +Q+L + AD+ARG+ L + ++ N+L+ + A ++D+GL+ +KK
Sbjct: 129 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK 188
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
R P W ++ SLN + SD WS+
Sbjct: 189 TMGR-------------------------LPVRWMAIE-SLNY-----SVYTTNSDVWSY 217
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
G L E+ + G P+ G++ E+Y KLP Y + E++ ++ +C + K
Sbjct: 218 GVLLWEIVSLGGTPYCGMTCAELYE------KLPQGYRLEKPLNCDDEVYDLMRQCWREK 271
Query: 413 ASKRPTFSAMLATFLRHLQE 432
+RP+F+ +L + R L+E
Sbjct: 272 PYERPSFAQILVSLNRMLEE 291
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 10 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 65
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 66 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 125
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 126 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 175
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 176 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 221
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 222 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 267
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 19 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 74
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 75 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 134
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 135 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 184
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 185 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 230
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 231 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 276
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 26 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 81
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 82 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 141
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 142 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 191
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 192 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 237
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 238 ISSILEKGERLPQPPICTI-------DVYMIMRKCWMIDADSRPKFRELIIEF 283
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 169 SVAVK--KVMIAEEMEPDWL-----SGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMD 221
+VA+K KV E+ D+L GQ D+ NV GV+ + +V++
Sbjct: 73 AVAIKTLKVGYTEKQRRDFLCEASIMGQFDH--------PNVVHLEGVVTRGKPVMIVIE 124
Query: 222 RC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
G++ +++++G+ T+ Q++ IA G+ L G V ++ N+L++++
Sbjct: 125 FMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC 184
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
VSD+GL+ ++ E D +++ + +TAPEA + K
Sbjct: 185 KVSDFGLSRVI----------EDDPEAVYTTTGGK-IPVRWTAPEAIQYRK--------- 224
Query: 341 AIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
+ SD WS+G + E M G P+ +S +++ +A+ + +LP + P
Sbjct: 225 ---FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLP------APMDCPA 275
Query: 400 ELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
L +++ +C Q + ++RP F ++ L ++ R+P ++
Sbjct: 276 GLHQLMLDCWQKERAERPKFEQIVGI----LDKMIRNPNSA 312
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 51/290 (17%)
Query: 140 LVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMW 199
+++KLGEG +G+ VA+K+V + +++ + ++ +++
Sbjct: 33 VLEKLGEGS------YGSVYKAIHKETGQIVAIKQVPVESDLQE--IIKEISIMQQCD-- 82
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELH 258
+V ++G ++ L +VM+ C GSV ++ LT ++I +G+ LH
Sbjct: 83 SPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH 142
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+ +IK N+LL+ G A ++D+G+A L ++ + + +
Sbjct: 143 FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKR--------------NXVIGT 188
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRA 378
P + APE + IG + +D WS G T +EM G P+A +
Sbjct: 189 PFWMAPEVIQ------------EIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFM 236
Query: 379 VVKNRKLPPQYASIVGVGIPRELWK-----MIGECLQFKASKRPTFSAML 423
+ N PP + ELW + +CL +R T + +L
Sbjct: 237 IPTNP--PPTFRK-------PELWSDNFTDFVKQCLVKSPEQRATATQLL 277
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 42/299 (14%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+K +++LG+G VE+ Q VAVKK+ + E +++ L+ S
Sbjct: 15 LKFLQQLGKGNFGSVEM--CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK--S 70
Query: 198 MWCRNVCTFHGVLRM--DSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
+ N+ + GV L L+M+ YGS++ +Q + R+ ++L+Y + I +G+
Sbjct: 71 LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGM 130
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N+L++ R + D+GL +L + E S I
Sbjct: 131 EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIF----- 185
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ APE+ K S SD WSFG L E+ T I + E
Sbjct: 186 ------WYAPESLTESK------------FSVASDVWSFGVVLYELFT-YIEKSKSPPAE 226
Query: 375 IYRAVVKNRKLPPQYASIVGV-----------GIPRELWKMIGECLQFKASKRPTFSAM 422
R + +++ ++ + G P E++ ++ EC ++RP+F +
Sbjct: 227 FMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 285
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 52/298 (17%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVM-IAEEMEPDWLSGQLDNLRRASMW 199
+K LGE R + G+ +AVK++ +E E L LD + R+S
Sbjct: 24 LKDLGEIGRGAYGSVNKMVHKPSGQI---MAVKRIRSTVDEKEQKQLLMDLDVVMRSSD- 79
Query: 200 CRNVCTFHGVLRMDS----CLGLV---MDRCYGSVQLAM-----QRNEGRLTLEQILRYG 247
C + F+G L + C+ L+ D+ Y V + + G++TL +
Sbjct: 80 CPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATV---- 135
Query: 248 ADIARGVVEL-HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
+ + L ++ +IKPSN+LLD SG + D+G++ L + C
Sbjct: 136 ----KALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRP- 190
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE +P G SD WS G TL E+ TG P
Sbjct: 191 --------------YMAPERIDPSASRQ--------GYDVRSDVWSLGITLYELATGRFP 228
Query: 367 WAG-LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ S + VVK PPQ ++ + CL SKRP + +L
Sbjct: 229 YPKWNSVFDQLTQVVKGD--PPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELL 284
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 204 CTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVV 263
CTF + L VM+ G + ++ + L + Y A+I G+ LH+ G+V
Sbjct: 86 CTF----QTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIV 141
Query: 264 CMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTA 323
++K N+LLD G ++D+G+ K D+ C +P+Y A
Sbjct: 142 YRDLKLDNILLDKDGHIKIADFGMC---------KENMLGDAKTNEFCG-----TPDYIA 187
Query: 324 PEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR 383
PE K + ++ W WSFG L EM G P+ G EE++ ++ +
Sbjct: 188 PEILLGQKYNHSVDW------------WSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDN 235
Query: 384 KLPPQY 389
P++
Sbjct: 236 PFYPRW 241
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 64 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 123
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 124 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 171
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 172 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 206
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 38/208 (18%)
Query: 210 LRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKP 269
+ +S L +VM+ G + R GR + Y A I LH+ ++ ++KP
Sbjct: 131 FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKP 190
Query: 270 SNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEP 329
NLL+D G V+D+G A +K + C +P Y APE
Sbjct: 191 ENLLIDQQGYIQVTDFGFAKRVKG---------------RTWXLCG--TPEYLAPEI--- 230
Query: 330 VKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQ 388
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P
Sbjct: 231 ---ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSH 281
Query: 389 YASIVGVGIPRELWKMIGECLQFKASKR 416
++S +L ++ LQ +KR
Sbjct: 282 FSS--------DLKDLLRNLLQVDLTKR 301
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 702 VEGR-ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTI 760
+ GR +L+ +LL GA A++A LH+A ++VK +LD+ N +++
Sbjct: 95 LHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT 154
Query: 761 PLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPD 820
PL A + G V LLL GA N +++G+ A H A +I +++ + ++L H
Sbjct: 155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA-----VIEKHVFVVELLLLH-G 208
Query: 821 AAVEVRNHSGKTLRDFLE 838
A+V+V N +T D E
Sbjct: 209 ASVQVLNKRQRTAVDCAE 226
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 38/144 (26%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
+NAD LHLAC++G ++V+ +L+ S + D G+ PL++A + G E V L++
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
GA++ NA +++G + LH AV +K+
Sbjct: 174 HGASI-----------------------------------NASNNKGNTALHEAVIEKHV 198
Query: 627 DCAIVILENGGCRSMAILNSKELT 650
++L +G S+ +LN ++ T
Sbjct: 199 FVVELLLLHGA--SVQVLNKRQRT 220
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 715 GAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCV 774
G T+QD + LH+A++ +L+ ++L G + RN +PLH+A +G V
Sbjct: 78 GVNVTSQDGS--SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 775 GLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT 832
LL + A N +D G+ A + E + ++L H A++ N+ G T
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGG-----HHELVALLLQH-GASINASNNKGNT 187
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 538 VDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMR 597
V+V +DG PL A G + + L+K GAN +R + P H+ G ++
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP--LHLACQQGHFQVVK 136
Query: 598 ELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVA 657
LL + A PN D G + L A + + + ++L++G S+ N+K T LH V
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA--SINASNNKGNTALHEAVI 194
Query: 658 TWNVAVVK 665
+V VV+
Sbjct: 195 EKHVFVVE 202
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
+G+ VN+ + + PLHVA G + LLL GA+ ++ + H+A
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 13 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 68
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA G+
Sbjct: 69 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEGMN 128
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 129 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 178
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 179 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 224
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 225 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 270
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 204 CTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVV 263
CTF + L VM+ G + ++ + L + Y A+I G+ LH+ G+V
Sbjct: 85 CTF----QTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIV 140
Query: 264 CMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTA 323
++K N+LLD G ++D+G+ K D+ C +P+Y A
Sbjct: 141 YRDLKLDNILLDKDGHIKIADFGMC---------KENMLGDAKTNXFCG-----TPDYIA 186
Query: 324 PEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR 383
PE K + ++ W WSFG L EM G P+ G EE++ ++ +
Sbjct: 187 PEILLGQKYNHSVDW------------WSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDN 234
Query: 384 KLPPQY 389
P++
Sbjct: 235 PFYPRW 240
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 139
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 140 KDGHIKITDFGL--------CKEGISDG------ATMKTFCGTPEYLAPEVLE------- 178
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 179 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 391 SIVG 394
S++
Sbjct: 234 SLLA 237
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 65 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 124
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 125 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 172
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 173 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 207
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 18 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 74 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 132
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 133 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------ 183
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 184 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 228
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 229 EISSILEKGERLPQPPICTI-------DVYMIMRKCWMIDADSRPKFRELIIEF 275
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K L G G G WI G+ + + VA+K+ + E P LD
Sbjct: 23 EFKKIKVLSSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 78
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 79 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 137
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 138 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------ 188
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 189 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 233
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 234 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 280
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 139
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 140 KDGHIKITDFGL--------CKEGISDG------ATMKTFCGTPEYLAPEVLE------- 178
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 179 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 391 SIVG 394
S++
Sbjct: 234 SLLA 237
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV F+G R + L ++ C G + + R+ + GVV LH G
Sbjct: 66 NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG 125
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
+ +IKP NLLLD +SD+GLA + + + R+ + M C L Y
Sbjct: 126 ITHRDIKPENLLLDERDNLKISDFGLATVFRY---------NNRERLLNKM-CGTLP--Y 173
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
APE L P D WS G L M G +PW
Sbjct: 174 VAPE----------LLKRREFHAEP-VDVWSCGIVLTAMLAGELPW 208
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 139
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 140 KDGHIKITDFGL--------CKEGISDG------ATMKXFCGTPEYLAPEVLE------- 178
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 179 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 391 SIVG 394
S++
Sbjct: 234 SLLA 237
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 18 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 74 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 132
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 133 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------ 183
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 184 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 228
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 229 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 275
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 83 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 142
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 143 KDGHIKITDFGL--------CKEGISDG------ATMKTFCGTPEYLAPEVLE------- 181
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 182 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 236
Query: 391 SIVG 394
S++
Sbjct: 237 SLLA 240
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 130 IEVGVHHD---VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWL 186
+++ + HD +LVK +G G +G + VAVK + E+++ + +
Sbjct: 10 MDLPIMHDSDRYELVKDIGSGN------FGVARLMRDKQSNELVAVKYIERGEKIDEN-V 62
Query: 187 SGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRY 246
++ N R S+ N+ F V+ + L +VM+ G N GR + ++ +
Sbjct: 63 KREIINHR--SLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFF 120
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECD 304
+ GV HA V ++K N LLD S R + +G +
Sbjct: 121 FQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSK--------------- 165
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
SS +HS T+ +P Y APE +KK +D + +D WS G TL M G+
Sbjct: 166 SSVLHSQPKSTVGTPAYIAPEVL--LKKE----YDGKV-----ADVWSCGVTLYVMLVGA 214
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
P+ + +R + +R L QYA V I E +I +KR
Sbjct: 215 YPFEDPEEPKNFRKTI-HRILNVQYAIPDYVHISPECRHLISRIFVADPAKR 265
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 50/277 (18%)
Query: 170 VAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDR 222
VA+K K E D+LS GQ D+ N+ GV+ +V +
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDH--------PNIIRLEGVVTRGRLAMIVTEY 131
Query: 223 C-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAV 281
GS+ ++ ++G+ T+ Q++ + G+ L G V ++ N+L+D++
Sbjct: 132 MENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCK 191
Query: 282 VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDA 341
VSD+GL+ +L+ D + +TAPEA + F
Sbjct: 192 VSDFGLSRVLE-----------DDPDAAXTTTGGKIPIRWTAPEAI-----AFRTF---- 231
Query: 342 IGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRE 400
S SD WSFG + E + G P+ ++ ++ +V + +LP +G P
Sbjct: 232 ---SSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLP------APMGCPHA 282
Query: 401 LWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
L +++ +C ++RP FS +++ L L RSP
Sbjct: 283 LHQLMLDCWHKDRAQRPRFSQIVSV----LDALIRSP 315
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 40/294 (13%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 20 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 75
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGV 254
AS+ +VC G+ + S + L+M +G + ++ ++ + + +L + IA+G+
Sbjct: 76 ASVDNPHVCRLLGIC-LTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 134
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 135 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------ 185
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A
Sbjct: 186 ---------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPAS 230
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
EI + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 231 EISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 277
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
GV+ ++KPSN+LLD G+ + D+G++ L + C +
Sbjct: 145 GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAA--------------- 189
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE-EIYRAV 379
Y APE +P + + +D WS G +LVE+ TG P+ + E+ V
Sbjct: 190 YMAPERIDPPDPTKPDY-------DIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKV 242
Query: 380 VKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA-TFLRHLQEL 433
++ PP +G + + +CL KRP ++ +L +F++ + L
Sbjct: 243 LQEE--PPLLPG--HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRYETL 293
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 139
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 140 KDGHIKITDFGL--------CKEGISDG------ATMKXFCGTPEYLAPEVLE------- 178
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 179 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 391 SIVG 394
S++
Sbjct: 234 SLLA 237
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 139
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 140 KDGHIKITDFGL--------CKEGISDG------ATMKXFCGTPEYLAPEVLE------- 178
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 179 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 391 SIVG 394
S++
Sbjct: 234 SLLA 237
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G E T E+ YGA+I + LH+ VV +IK NL+LD
Sbjct: 85 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD 144
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C++ + + M +P Y APE E
Sbjct: 145 KDGHIKITDFGL--------CKEGISDG------ATMKXFCGTPEYLAPEVLE------- 183
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQYA 390
D+ G + D W G + EM G +P+ E ++ ++ R L P+
Sbjct: 184 ---DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 238
Query: 391 SIVG 394
S++
Sbjct: 239 SLLA 242
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 50/294 (17%)
Query: 153 EVWGAWIGGGQGRCRHSVAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCT 205
EV+ + G+ VA+K K E+ D+L GQ + N+
Sbjct: 59 EVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH--------HNIIR 110
Query: 206 FHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVC 264
GV+ + ++ + G++ ++ +G ++ Q++ IA G+ L V
Sbjct: 111 LEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVH 170
Query: 265 MNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAP 324
++ N+L++++ VSD+GL+ +L+ D + +TAP
Sbjct: 171 RDLAARNILVNSNLVCKVSDFGLSRVLE-----------DDPEATYTTSGGKIPIRWTAP 219
Query: 325 EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNR 383
EA K + SD WSFG + E+ T G P+ LS E+ +A+
Sbjct: 220 EAISYRK------------FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGF 267
Query: 384 KLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
+LP + P +++++ +C Q + ++RP F+ +++ L +L R+P
Sbjct: 268 RLP------TPMDCPSAIYQLMMQCWQQERARRPKFADIVSI----LDKLIRAP 311
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 50/277 (18%)
Query: 170 VAVK--KVMIAEEMEPDWLS-----GQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDR 222
VA+K K E D+LS GQ D+ N+ GV+ +V +
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDH--------PNIIRLEGVVTRGRLAMIVTEY 131
Query: 223 C-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAV 281
GS+ ++ ++G+ T+ Q++ + G+ L G V ++ N+L+D++
Sbjct: 132 MENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCK 191
Query: 282 VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDA 341
VSD+GL+ +L+ D + +TAPEA + F
Sbjct: 192 VSDFGLSRVLE-----------DDPDAAYTTTGGKIPIRWTAPEAI-----AFRTF---- 231
Query: 342 IGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRE 400
S SD WSFG + E + G P+ ++ ++ +V + +LP +G P
Sbjct: 232 ---SSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLP------APMGCPHA 282
Query: 401 LWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
L +++ +C ++RP FS +++ L L RSP
Sbjct: 283 LHQLMLDCWHKDRAQRPRFSQIVSV----LDALIRSP 315
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 48/294 (16%)
Query: 138 VKLVKKLGEGRRAGVEVW-GAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++L+K+LG G+ EVW G W G + VA+K + M P+ + +++
Sbjct: 11 LQLIKRLGNGQFG--EVWMGTWNGNTK------VAIKTLKPGT-MSPESFLEEAQIMKKL 61
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVV 255
+ + V+ + + GS+ ++ EGR L L ++ A +A G+
Sbjct: 62 KH--DKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMA 119
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
+ + +++ +N+L+ ++D+GLA +++ +
Sbjct: 120 YIERMNYIHRDLRSANILVGNGLICKIADFGLARLIE-------------DNEXTARQGA 166
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+TAPEA L+ I +SD WSFG L E+ T G +P+ G++ E
Sbjct: 167 KFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELVTKGRVPYPGMNNRE 214
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFL 427
+ V + ++P PQ P L +++ C + +RPTF L +FL
Sbjct: 215 VLEQVERGYRMPCPQ-------DCPISLHELMIHCWKKDPEERPTFE-YLQSFL 260
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 130 IEVGVHHD---VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWL 186
+++ + HD +LVK +G G +G + VAVK + E+++ + +
Sbjct: 10 MDLPIMHDSDRYELVKDIGSGN------FGVARLMRDKQSNELVAVKYIERGEKIDEN-V 62
Query: 187 SGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRY 246
++ N R S+ N+ F V+ + L +VM+ G N GR + ++ +
Sbjct: 63 KREIINHR--SLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFF 120
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECD 304
+ GV HA V ++K N LLD S R + +G +
Sbjct: 121 FQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSK--------------- 165
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
SS +HS T+ +P Y APE +KK +D + +D WS G TL M G+
Sbjct: 166 SSVLHSQPKDTVGTPAYIAPEVL--LKKE----YDGKV-----ADVWSCGVTLYVMLVGA 214
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
P+ + +R + +R L QYA V I E +I +KR
Sbjct: 215 YPFEDPEEPKNFRKTI-HRILNVQYAIPDYVHISPECRHLISRIFVADPAKR 265
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K L G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLSSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 182 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 273
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 28/236 (11%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+++ A+
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + + Y +PE
Sbjct: 153 NAVKVMDFGI-----------ARAIADSGNSVTQTAAVIGTAQYLSPEQAR--------- 192
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGI 397
+ SD +S GC L E+ TG P+ G S + + V+ +PP S G+
Sbjct: 193 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIPP---SARHEGL 246
Query: 398 PRELWKMIGECLQFKASKR-PTFSAMLATFLR-HLQELPRSPPASPDTGFTKFSTS 451
+L ++ + L R T + M A +R H E P +P D T +S
Sbjct: 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTDAERTSLLSS 302
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K L G G G WI G+ + + VA+K+ + E P LD
Sbjct: 23 EFKKIKVLSSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 78
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 79 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 138
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 139 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 188
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 189 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 234
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 235 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 280
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 18 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 73
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 74 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 133
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 134 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------- 183
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 184 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 229
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 230 ISSILEKGERLPQPPICTI-------DVYMIMRKCWMIDADSRPKFRELIIEF 275
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 16 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 72 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 132 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------- 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 182 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 228 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 273
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + VA+K+ + E P LD
Sbjct: 23 EFKKIKVLGSGA-FGTVYKGLWIPEGE-KVKIPVAIKE--LREATSPKANKEILDEAYVM 78
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 79 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 138
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+G A +L + + ++
Sbjct: 139 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL---GAEEKEYHAEGGKV------- 188
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 189 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 234
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 235 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 280
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 45/224 (20%)
Query: 211 RMDSCLGLVMDRCYG----SVQLAMQRNEGRLTLEQILRYGADIARGVVELH-----AAG 261
R ++ L +VM+ C G SV + L E +LR + + E H
Sbjct: 77 RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHT 136
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
V+ ++KP+N+ LD + D+GLA IL D + +P Y
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNH----------DEDFAKEFVG----TPYY 182
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV- 380
+PE + + + +SD WS GC L E+C P+ S +E+ +
Sbjct: 183 MSPEQM------------NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIRE 230
Query: 381 -KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
K R++P +Y+ EL ++I L K RP+ +L
Sbjct: 231 GKFRRIPYRYSD--------ELNEIITRMLNLKDYHRPSVEEIL 266
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 38/293 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-R 195
+ K +K LG G G G WI G+ + + V + + E P LD
Sbjct: 50 EFKKIKVLGSGA-FGTVYKGLWIPEGE---KVKIPVAIMELREATSPKANKEILDEAYVM 105
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
AS+ +VC G+ + + +G + ++ ++ + + +L + IA+G+
Sbjct: 106 ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMN 165
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ ++D+GLA +L + + ++
Sbjct: 166 YLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GAEEKEYHAEGGKV------- 215
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
P W ++ L+ + + +SD WS+G T+ E+ T GS P+ G+ A E
Sbjct: 216 --------PIKWMALESILHRIY------THQSDVWSYGVTVWELMTFGSKPYDGIPASE 261
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + K +LP P +I +++ ++ +C A RP F ++ F
Sbjct: 262 ISSILEKGERLPQPPICTI-------DVYMIMVKCWMIDADSRPKFRELIIEF 307
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
G++ ++ N+G+ T+ Q++ IA G+ L V ++ N+L++++ VSD
Sbjct: 100 GALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSD 159
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+GL+ L+ E S ++ + +TAPEA K
Sbjct: 160 FGLSRFLE---------ENSSDPTYTSSLGGKIPIRWTAPEAIAFRK------------F 198
Query: 345 SPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK 403
+ SDAWS+G + E M G P+ +S +++ A+ ++ +LPP P L +
Sbjct: 199 TSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPP------PDCPTSLHQ 252
Query: 404 MIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
++ +C Q + RP F +++ L ++ R+P
Sbjct: 253 LMLDCWQKDRNARPRFPQVVSA----LDKMIRNP 282
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 23/255 (9%)
Query: 546 DPPLVF--ALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAG 603
D VF A ++G E V L++RGA++ +G + H D ++ L+ G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL--TALHQACIDDNVDMVKFLVENG 96
Query: 604 ADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAV 663
A+ N D+EG LH A + Y D A ++ G + +NS+ TPL + +
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEEL 154
Query: 664 VKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDA 723
++ V +DI AA K++ + R+ + L +
Sbjct: 155 LQNEVNRQG-------VDIE----------AARKEEERIMLRDARQWLNSGHINDVRHAK 197
Query: 724 QNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGAD 783
TALH+A+ E++K+++ A DVNI++ PLH A G + +L+ D
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 784 CNWQDDEGDNAFHIA 798
+ G AF +A
Sbjct: 258 MEAVNKVGQTAFDVA 272
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N DG TALH AC + ++V+ ++E + N++ D +G PL A + G + LI +
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 568 GANVISRLREGFGP 581
GA+V + EG P
Sbjct: 129 GAHVGAVNSEGDTP 142
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 103/274 (37%), Gaps = 36/274 (13%)
Query: 147 GRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRN--VC 204
G GV +G G H VAVK ++ +++ + G++ + R+ +
Sbjct: 16 GDTLGVGTFGKVKIGEHQLTGHKVAVK-ILNRQKIRSLDVVGKIKREIQNLKLFRHPHII 74
Query: 205 TFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVC 264
+ V+ + +VM+ G GR+ + R I V H VV
Sbjct: 75 KLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVH 134
Query: 265 MNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAP 324
++KP N+LLDA A ++D+GL+ ++ R C SPNY AP
Sbjct: 135 RDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--LRTSCG-------------SPNYAAP 179
Query: 325 EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRK 384
E + PE D WS G L + G++P+ +++ +
Sbjct: 180 EVIS-----------GRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF 228
Query: 385 LPPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
P+Y + R + ++ LQ KR T
Sbjct: 229 YIPEYLN-------RSVATLLMHMLQVDPLKRAT 255
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 13 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 61
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 62 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 119
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + N+ N+L++ R + D+GL +L + E
Sbjct: 120 YTSQICKGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGE 179
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 180 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 216
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 217 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 269
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 270 WNNNVNQRPSF 280
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 103/274 (37%), Gaps = 36/274 (13%)
Query: 147 GRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRN--VC 204
G GV +G G H VAVK ++ +++ + G++ + R+ +
Sbjct: 16 GDTLGVGTFGKVKIGEHQLTGHKVAVK-ILNRQKIRSLDVVGKIKREIQNLKLFRHPHII 74
Query: 205 TFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVC 264
+ V+ + +VM+ G GR+ + R I V H VV
Sbjct: 75 KLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVH 134
Query: 265 MNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAP 324
++KP N+LLDA A ++D+GL+ ++ R C SPNY AP
Sbjct: 135 RDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--LRDSCG-------------SPNYAAP 179
Query: 325 EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRK 384
E + PE D WS G L + G++P+ +++ +
Sbjct: 180 EVIS-----------GRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF 228
Query: 385 LPPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
P+Y + R + ++ LQ KR T
Sbjct: 229 YIPEYLN-------RSVATLLMHMLQVDPLKRAT 255
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
+V LL GA+P +AL +A ++VK++LD GVDVN + + PL A+
Sbjct: 51 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110
Query: 767 ARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
CV +LL +GAD + D G N+ +A
Sbjct: 111 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENV-DVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
G +L + E++ QENV + D++G PL++A A G V L++ GA
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCA 629
+ L +G +++ C+ G D ++ LL G D N D G + L AV + C
Sbjct: 61 DP-QLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 630 IVILENGG 637
++LE+G
Sbjct: 119 KMLLESGA 126
Score = 38.5 bits (88), Expect = 0.028, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+ +G T L A G +VE +L+ + + +L K + L A + G + V L+
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
G +V G P + V H + C++ LL +GADP D G + + AVA Y
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVK--CVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Query: 628 CAIVI 632
VI
Sbjct: 150 VQQVI 154
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
+V LL GA+P +AL +A ++VK++LD GVDVN + + PL A+
Sbjct: 67 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 126
Query: 767 ARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
CV +LL +GAD + D G N+ +A
Sbjct: 127 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENV-DVLDKDGDPPLVFALAAGSPECVHALI 565
Q A+ + LA + E++ QENV + D++G PL++A A G V L+
Sbjct: 16 QGANSLSVHQLAAQ---GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL 72
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKY 625
+ GA+ L +G +++ C+ G D ++ LL G D N D G + L AV +
Sbjct: 73 QNGADP-QLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 130
Query: 626 TDCAIVILENGG 637
C ++LE+G
Sbjct: 131 VKCVKMLLESGA 142
Score = 38.5 bits (88), Expect = 0.028, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+ +G T L A G +VE +L+ + + +L K + L A + G + V L+
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 107
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
G +V G P + V H + C++ LL +GADP D G + + AVA Y
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVK--CVKMLLESGADPTIETDSGYNSMDLAVALGYRS 165
Query: 628 CAIVI 632
VI
Sbjct: 166 VQQVI 170
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
+V LL GA+P +AL +A ++VK++LD GVDVN + + PL A+
Sbjct: 49 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 108
Query: 767 ARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
CV +LL +GAD + D G N+ +A
Sbjct: 109 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 522 GSAELVEAILEYSQENV-DVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFG 580
E++ QENV + D++G PL++A A G V L++ GA+ L +G
Sbjct: 10 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRE 68
Query: 581 PSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
+++ C+ G D ++ LL G D N D G + L AV + C ++LE+G
Sbjct: 69 SALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 38.5 bits (88), Expect = 0.028, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
+ +G T L A G +VE +L+ + + +L K + L A + G + V L+
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
G +V G P + V H + C++ LL +GADP D G + + AVA Y
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVK--CVKMLLESGADPTIETDSGYNSMDLAVALGYRS 147
Query: 628 CAIVI 632
VI
Sbjct: 148 VQQVI 152
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 31/226 (13%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWC 200
++K+GEG +G VA+K+V + ++ E S + +
Sbjct: 7 LEKIGEG------TYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
+N+ H VL D L LV + C ++ G L E + + + +G+ H+
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR 120
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
V+ ++KP NLL++ +G ++D+GLA P C +++
Sbjct: 121 NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV--------------RCYSAEVVTLW 166
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y P+ LF A S D WS GC E+ + P
Sbjct: 167 YRPPDV---------LF--GAKLYSTSIDMWSAGCIFAELANAARP 201
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 36/208 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGL--AAILKKPA 295
LT +QIL I RG+ +HA G ++KP+N+LL G+ V+ D G A +
Sbjct: 131 LTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEG 190
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
R+A D + CT+ +Y APE + + I +D WS GC
Sbjct: 191 SRQALTLQDW----AAQRCTI---SYRAPELFSVQSHCV---------IDERTDVWSLGC 234
Query: 356 TLVEMCTGSIPWAGL--SAEEIYRAVVKNRKLP--PQYASIVGVGIPRELWKMIGECLQF 411
L M G P+ + + + AV +P P+++S LW+++ +
Sbjct: 235 VLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSS--------ALWQLLNSMMTV 286
Query: 412 KASKRPTFSAMLATFLRHLQELPRSPPA 439
+RP +L+ L LQ PPA
Sbjct: 287 DPHQRPHIPLLLSQ-LEALQ-----PPA 308
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 510 DGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA 569
DG T LH A + G AE V+ +L + V+ KDG+ PL A G E V L+ +GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 570 NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
+V +R ++G P H+ +G + ++ L GAD NA
Sbjct: 67 DVNARSKDGNTPE--HLAKKNGHHEIVKLLDAKGADVNA 103
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E V+ LL+ GA+ A+ T LH+A+ E+VK++L G DVN R+ P H+A
Sbjct: 23 EEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
Query: 766 LARGAKSCVGLLLSAGADCN 785
G V LL + GAD N
Sbjct: 83 KKNGHHEIVKLLDAKGADVN 102
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 727 TALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNW 786
T LH A+ E VK +L G DVN R+ PLH+A G V LLL+ GAD N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 787 QDDEGDNAFHIA 798
+ +G+ H+A
Sbjct: 71 RSKDGNTPEHLA 82
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 543 KDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLA 602
KDG+ PL A G E V L+ +GA+V +R ++G P H+ A +G + ++ LL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP--LHLAAKNGHAEIVKLLLAK 64
Query: 603 GADPNAVDDEGESVLHRA 620
GAD NA +G + H A
Sbjct: 65 GADVNARSKDGNTPEHLA 82
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA + G AE+V+ +L + V+ KDG+ P A G E V L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 567 RGANVISR 574
+GA+V +R
Sbjct: 97 KGADVNAR 104
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRN 755
E+V++LL GA+ A+ T H+A E+VK++ G DVN R+
Sbjct: 56 EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 761 PLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPD 820
PLH A G V LLS GAD N + +G+ H+AA + ++ +L
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA------KNGHAEIVKLLLAKG 65
Query: 821 AAVEVRNHSGKT 832
A V R+ G T
Sbjct: 66 ADVNARSKDGNT 77
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 130/325 (40%), Gaps = 73/325 (22%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDN-LRR 195
D+ + +K+G G V W G VAVK +M E D+ + +++ LR
Sbjct: 38 DLNIKEKIGAGSFGTVHR-AEWHGS-------DVAVKILM-----EQDFHAERVNEFLRE 84
Query: 196 ASMWCR----NVCTFHGVLRMDSCLGLVMDR-CYGSVQLAMQRNEGRLTLEQI--LRYGA 248
++ R N+ F G + L +V + GS+ + ++ R L++ L
Sbjct: 85 VAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAY 144
Query: 249 DIARGVVELHAAG--VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
D+A+G+ LH +V N+K NLL+D V D+GL+ + KA S
Sbjct: 145 DVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL-------KASTFLSSK 197
Query: 307 RIHSCMDCTMLSPNYTAPEAW--EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+P + APE EP + +SD +SFG L E+ T
Sbjct: 198 SAAG-------TPEWMAPEVLRDEPSNE--------------KSDVYSFGVILWELATLQ 236
Query: 365 IPWAGLSAEEIYRAVVKN-------RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRP 417
PW L+ ++ AV R L PQ A+I+ E W KRP
Sbjct: 237 QPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPW------------KRP 284
Query: 418 TFSAMLATFLRHLQELPRSPPASPD 442
+F+ ++ LR L + PP D
Sbjct: 285 SFATIM-DLLRPLIKSAVPPPNRSD 308
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
++MD G ++ R R Y A++ + LH+ ++ ++KP N+LLD +
Sbjct: 83 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKN 142
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPE--AWEPVKKSLN 335
G ++D+G A K P+ + C +P+Y APE + +P KS+
Sbjct: 143 GHIKITDFGFA---------KYVPDV------TYXLCG--TPDYIAPEVVSTKPYNKSI- 184
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQY----A 390
D WSFG + EM G P+ + + Y ++ + PP +
Sbjct: 185 -------------DWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVK 231
Query: 391 SIVGVGIPRELWKMIGECLQF---KASKRPTFSAML-ATFLRHLQELPRSPPASPDTGFT 446
++ I R+L + +G LQ P F ++ L E P PP G T
Sbjct: 232 DLLSRLITRDLSQRLGN-LQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDT 290
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 225 GSVQLAMQRNEGRLTLEQILR-YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVS 283
G + +QR R LE R Y A+IA + LH+ +V ++KP N+LLD+ G V++
Sbjct: 124 GELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLT 181
Query: 284 DYGLAAILKKPACRKARPECDSSRIHSCMDCTML-SPNYTAPEAW--EPVKKSLNLFWDD 340
D+GL C + H+ T +P Y APE +P +++
Sbjct: 182 DFGL---------------CKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTV------ 220
Query: 341 AIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV-KNRKLPP 387
D W G L EM G P+ + E+Y ++ K +L P
Sbjct: 221 --------DWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKP 260
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 28/236 (11%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+L+ A+
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISAT 152
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + Y +PE
Sbjct: 153 NAVKVVDFGI-----------ARAIADSGNSVXQTAAVIGTAQYLSPEQAR--------- 192
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGI 397
+ SD +S GC L E+ TG P+ G S + V+ +PP S G+
Sbjct: 193 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP---SARHEGL 246
Query: 398 PRELWKMIGECLQFKASKR-PTFSAMLATFLR-HLQELPRSPPASPDTGFTKFSTS 451
+L ++ + L R T + M A +R H E P +P D T +S
Sbjct: 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTDAERTSLLSS 302
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+++ A+
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + + Y +PE
Sbjct: 153 NAVKVMDFGI-----------ARAIADSGNSVTQTAAVIGTAQYLSPEQAR--------- 192
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGI 397
+ SD +S GC L E+ TG P+ G S + V+ +PP S G+
Sbjct: 193 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP---SARHEGL 246
Query: 398 PRELWKMIGECLQFKASKR-PTFSAMLATFLR-HLQELPRSPPASPDTGFTKFSTS 451
+L ++ + L R T + M A +R H E P +P D T +S
Sbjct: 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTDAERTSLLSS 302
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+++ A+
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + + Y +PE
Sbjct: 153 NAVKVMDFGI-----------ARAIADSGNSVTQTAAVIGTAQYLSPEQAR--------- 192
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGI 397
+ SD +S GC L E+ TG P+ G S + V+ +PP S G+
Sbjct: 193 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP---SARHEGL 246
Query: 398 PRELWKMIGECLQFKASKR-PTFSAMLATFLR-HLQELPRSPPASPDTGFTKFSTS 451
+L ++ + L R T + M A +R H E P +P D T +S
Sbjct: 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTDAERTSLLSS 302
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+++ A+
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + + Y +PE
Sbjct: 153 NAVKVMDFGI-----------ARAIADSGNSVTQTAAVIGTAQYLSPEQAR--------- 192
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGI 397
+ SD +S GC L E+ TG P+ G S + V+ +PP S G+
Sbjct: 193 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP---SARHEGL 246
Query: 398 PRELWKMIGECLQFKASKR-PTFSAMLATFLR-HLQELPRSPPASPDTGFTKFSTS 451
+L ++ + L R T + M A +R H E P +P D T +S
Sbjct: 247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTDAERTSLLSS 302
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 121/299 (40%), Gaps = 55/299 (18%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKV-MIAEEMEPDWLSGQLDNLRR 195
D++ + +LG G VE + GQ AVK++ E L LD R
Sbjct: 35 DLEPIXELGRGAYGVVE-KXRHVPSGQ-----IXAVKRIRATVNSQEQKRLLXDLDISXR 88
Query: 196 ASMWCRNVCTFHGVLRMDS----CLGLV---MDRCYGSVQLAMQRNEGRLTLEQIL-RYG 247
++ C TF+G L + C L +D+ Y V ++G+ E IL +
Sbjct: 89 -TVDCPFTVTFYGALFREGDVWICXELXDTSLDKFYKQV-----IDKGQTIPEDILGKIA 142
Query: 248 ADIARGVVELHAA-GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
I + + LH+ V+ ++KPSN+L++A G+ D+G++ L + C
Sbjct: 143 VSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDIDAGCKP- 201
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE P LN G S +SD WS G T +E+ P
Sbjct: 202 --------------YXAPERINP---ELN-----QKGYSVKSDIWSLGITXIELAILRFP 239
Query: 367 WA--GLSAEEIYRAVVK-NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
+ G +++ + V + + +LP S E +CL+ + +RPT+ +
Sbjct: 240 YDSWGTPFQQLKQVVEEPSPQLPADKFS-------AEFVDFTSQCLKKNSKERPTYPEL 291
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 47/291 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 269 LRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK-- 318
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVE 256
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 319 LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 378
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 379 VERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQGAK 425
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+ E+
Sbjct: 426 FPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREV 473
Query: 376 YRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 474 LDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 516
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 35/267 (13%)
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLA-MQRNEGRLTLE-QILRYGADIARG 253
A+M N+ + + L +VMD C G + +G L E QIL + I
Sbjct: 78 ANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLA 137
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ +H ++ +IK N+ L G + D+G+A +L +S +
Sbjct: 138 LKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL-------------NSTVELARA 184
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C + +P Y +PE E N +++ +SD W+ GC L E+CT + S +
Sbjct: 185 C-IGTPYYLSPEICE------NKPYNN------KSDIWALGCVLYELCTLKHAFEAGSMK 231
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLAT-FLRHLQE 432
+ ++ PP V + +L ++ + + RP+ +++L F+ E
Sbjct: 232 NLVLKIISG-SFPP-----VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIE 285
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPA 459
SP + K + ++P PA
Sbjct: 286 KFLSPQLIAEEFCLKTFSKFGSQPIPA 312
>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 305
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 34/231 (14%)
Query: 218 LVMDRCYGSVQLAMQR-NEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
+VM+ C +Q + E R + Q Y + G+ LH+ G+V +IKP NLLL
Sbjct: 85 MVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTT 144
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
G +S G+A L A A C +S+ SP + PE + L+
Sbjct: 145 GGTLKISALGVAEALHPFA---ADDTCRTSQG---------SPAFQPPE----IANGLDT 188
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVG 396
F + D WS G TL + TG P+ G + +++ + K YA G
Sbjct: 189 FSGFKV------DIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKG-----SYAIPGDCG 237
Query: 397 IPRELWKMIGECLQFKASKRPTFSAMLA-TFLRHLQ---ELPRSPPASPDT 443
P L ++ L+++ +KR + + ++ R E P P SPDT
Sbjct: 238 PP--LSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPVPIPPSPDT 286
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 11 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 59
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 60 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 117
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + ++ N+L++ R + D+GL +L + E
Sbjct: 118 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE 177
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 178 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 214
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 215 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 267
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 268 WNNNVNQRPSF 278
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 32/214 (14%)
Query: 225 GSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSD 284
G++ ++ N+G+ T+ Q++ IA G+ L V ++ N+L++++ VSD
Sbjct: 102 GALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSD 161
Query: 285 YGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI 344
+GL+ L+ E S + + +TAPEA K
Sbjct: 162 FGLSRFLE---------ENSSDPTETSSLGGKIPIRWTAPEAIAFRK------------F 200
Query: 345 SPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK 403
+ SDAWS+G + E M G P+ +S +++ A+ ++ +LPP P L +
Sbjct: 201 TSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPP------PDCPTSLHQ 254
Query: 404 MIGECLQFKASKRPTFSAMLATFLRHLQELPRSP 437
++ +C Q + RP F +++ L ++ R+P
Sbjct: 255 LMLDCWQKDRNARPRFPQVVSA----LDKMIRNP 284
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 10 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 58
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 59 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 116
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + ++ N+L++ R + D+GL +L + E
Sbjct: 117 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE 176
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 177 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 213
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 214 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 266
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 267 WNNNVNQRPSF 277
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 12 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 61 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 118
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + ++ N+L++ R + D+GL +L + E
Sbjct: 119 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE 178
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 179 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 215
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 216 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 268
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 269 WNNNVNQRPSF 279
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 30 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 78
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 79 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 136
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + ++ N+L++ R + D+GL +L + E
Sbjct: 137 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE 196
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 197 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 233
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 234 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 286
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 287 WNNNVNQRPSF 297
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 129/305 (42%), Gaps = 54/305 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGA-WIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+K ++ LGEG V ++ G G VAVK + + P SG ++D L
Sbjct: 16 LKKIRDLGEGHFGKVSLYCYDPTNDGTGE---MVAVKA--LKADCGPQHRSGWKQEIDIL 70
Query: 194 RRASMWCRNVCTFHGVL--RMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADI 250
R +++ ++ + G + + L LVM+ GS++ + R+ + L Q+L + I
Sbjct: 71 R--TLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQI 126
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE-CDSSRIH 309
G+ LHA + N+ N+LLD + D+GLA KA PE + R+
Sbjct: 127 CEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLA---------KAVPEGHEYYRVR 177
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-----GS 364
D + + APE K ++ SD WSFG TL E+ T S
Sbjct: 178 EDGDSPVF---WYAPECL----KEYKFYY--------ASDVWSFGVTLYELLTHCDSSQS 222
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR------ELWKMIGECLQFKASKRPT 418
P L I + + +L G +PR E++ ++ C + +AS RPT
Sbjct: 223 PPTKFLELIGIAQGQMTVLRLTELLER--GERLPRPDKCPCEVYHLMKNCWETEASFRPT 280
Query: 419 FSAML 423
F ++
Sbjct: 281 FENLI 285
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 134 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 193
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A R+ +P Y APE
Sbjct: 194 LIDQQGYIQVTDFGFA-----------------KRVKGATWTLCGTPEYLAPEI------ 230
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 231 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 284
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 285 --------DLKDLLRNLLQVDLTKR 301
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 117/288 (40%), Gaps = 44/288 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+ ++ KK+G G+ + V + G VA+KKV I + M+ + ++D L
Sbjct: 33 NFRIEKKIGRGQFSEVYRAACLLDGV------PVALKKVQIFDLMDAKARADCIKEIDLL 86
Query: 194 RRASMWCRNVCTFHGVLRMDSCLGLVMDRCYG---SVQLAMQRNEGRLTLEQIL-RYGAD 249
++ + NV ++ D+ L +V++ S + + + RL E+ + +Y
Sbjct: 87 KQLNH--PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQ 144
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ + +H+ V+ +IKP+N+ + A+G + D GL ++ H
Sbjct: 145 LCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS----------KTTAAH 194
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
S + +P Y +PE G + +SD WS GC L EM P+ G
Sbjct: 195 SLVG----TPYYMSPERIH------------ENGYNFKSDIWSLGCLLYEMAALQSPFYG 238
Query: 370 LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRP 417
+Y K + Y + EL +++ C+ KRP
Sbjct: 239 -DKMNLYSLCKKIEQC--DYPPLPSDHYSEELRQLVNMCINPDPEKRP 283
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 637 GCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAAL 696
G +++ NS+ L +V VK+ V S VN DI G T L AA
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGY 56
Query: 697 KKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNV 756
+ VE LL GA+ A+D LH A E+ ++++ G VN+ ++
Sbjct: 57 NRVSVVE------YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 110
Query: 757 HNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENL 809
PLH A A+G LLL GAD ++ +G+ + D I++ L
Sbjct: 111 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 163
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLL 601
+ + D L+ A AG E V L +V R EG + H A + + + LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 602 AGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNV 661
GAD +A D G LH A + + + A +++++G ++A L + TPLH A
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKY 125
Query: 662 AVVK 665
+ K
Sbjct: 126 EICK 129
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G LH AC G E+ E ++++ V+V D PL A A G E L++
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 567 RGANVISRLREGFGP 581
GA+ + R+G P
Sbjct: 134 HGADPTKKNRDGNTP 148
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V ++G S L ++M+ G L + R G QI +I +G+ LH+
Sbjct: 83 VTKYYGSYLKGSKLWIIMEYLGGGSALDLLR-AGPFDEFQIATMLKEILKGLDYLHSEKK 141
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK +N+LL G ++D+G+A L ++ + + +P +
Sbjct: 142 IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKR--------------NTFVGTPFWM 187
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE +++S ++D WS G T +E+ G P + + + + KN
Sbjct: 188 APEV---IQQS---------AYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKN 235
Query: 383 RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP ++VG + + I CL S RPT +L
Sbjct: 236 N--PP---TLVG-DFTKSFKEFIDACLNKDPSFRPTAKELL 270
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 53.9 bits (128), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K A +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKGRTWXLAG-----------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-DAGVDVNIRNVHNTIPLHVALARG 769
LL AGA+ +QD RT LH A A+ + + +I+L + ++N R T PL +A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPD--------- 820
+ V L++A AD N D+ G A H AA N E + ++L H
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAV-----NNTEAVNILLMHHANRDAQDDKD 184
Query: 821 ------AAVE---------VRNHSGKTLRDFLEGLPREWISEDL 849
AA E + N + + + D ++ LPR+ SE L
Sbjct: 185 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL 228
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 13/221 (5%)
Query: 557 SPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESV 616
+ + + L+ +GA + + + + G + H+ A + D + LL AGAD N+ D+ G +
Sbjct: 29 TAQVISDLLAQGAELNATM-DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 87
Query: 617 LHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEI 676
LH AVA ++L N A ++ TPL L +A+ ++ + +
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGT-TPLILAA---RLAIEGMVEDLITADAD 143
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMAN 736
+N D G TAL AAA V E V ILL A AQD ++ T L +A+
Sbjct: 144 INAADNSGK--TALHWAAA------VNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 195
Query: 737 DVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
E K +LD + I + + +P VA R V LL
Sbjct: 196 SYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK-RGA 569
G+T+LHLA R A+ + +L+ + + + D G PL A+AA + L++ R
Sbjct: 51 GETSLHLAARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT 109
Query: 570 NVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
N+ +R+ +G P + A A G + +L+ A AD NA D+ G++ LH A A T+
Sbjct: 110 NLNARMHDGTTPLILAARLAIEGM---VEDLITADADINAADNSGKTALHWAAAVNNTEA 166
Query: 629 AIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVID 681
++L + R + K+ TPL L + K ++ + EI + +D
Sbjct: 167 VNILLMHHANRDAQ--DDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 217
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 596 MRELLLAGADPNA-VDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE---LTP 651
+ +LL GA+ NA +D GE+ LH A D A +L+ G A NS++ TP
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG-----ADANSQDNTGRTP 87
Query: 652 LHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRIL 711
LH VA + V + + + + D P L +AA L +EG +V L
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTP----LILAARLA----IEG--MVEDL 137
Query: 712 LTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAK 771
+TA A+ A D +TALH A+ N+ E V I+L + + ++ + PL +A G+
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 197
Query: 772 SCVGLLLSAGAD 783
LL A+
Sbjct: 198 EASKALLDNFAN 209
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 685 PVGTALCMAAALKKDHEVEGRE-----LVRILLTAGAEPTA-QDAQNRTALHIASMANDV 738
P+ A L ++E E ++ LL GAE A D T+LH+A+
Sbjct: 5 PLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARA 64
Query: 739 ELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGA-DCNWQDDEGDNAFHI 797
+ K +LDAG D N ++ PLH A+A A +LL A + N + +G +
Sbjct: 65 DAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL 124
Query: 798 AADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT 832
AA R +E ++ L DA + ++SGKT
Sbjct: 125 AA------RLAIEGMVEDLITADADINAADNSGKT 153
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
Q+ G+T LH A + + + +L N++ DG PL+ A V LI
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
A++ + G + H A + + LL+ A+ +A DD+ E+ L A +
Sbjct: 140 ADADI--NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 197
Query: 627 DCAIVILENGGCRSM 641
+ + +L+N R +
Sbjct: 198 EASKALLDNFANREI 212
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 47/291 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 186 LRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK-- 235
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVE 256
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 236 LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 295
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 296 VERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-------------YTARQGAK 342
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+ E+
Sbjct: 343 FPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREV 390
Query: 376 YRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 391 LDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 433
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 47/291 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 186 LRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK-- 235
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVE 256
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 236 LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 295
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 296 VERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQGAK 342
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+ E+
Sbjct: 343 FPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREV 390
Query: 376 YRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 391 LDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 433
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 26/182 (14%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L VM+ G + + R + Y A+I ++ LH G++ ++K N+LLD
Sbjct: 99 LFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLD 158
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+G+ K+ C + + + C +P+Y APE +
Sbjct: 159 HEGHCKLADFGMC---KEGIC---------NGVTTATFCG--TPDYIAPEILQ------- 197
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ P D W+ G L EM G P+ + ++++ A++ + + P +
Sbjct: 198 -----EMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDAT 252
Query: 396 GI 397
GI
Sbjct: 253 GI 254
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 47/293 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
++ L+K+LG G+ GV G W G ++ VAVK MI E M D + + +
Sbjct: 9 EITLLKELGSGQ-FGVVKLGKWKG------QYDVAVK--MIKEGSMSEDEFFQEAQTMMK 59
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGV 254
S + F+GV + + +V + L R+ G+ L Q+L D+ G+
Sbjct: 60 LSH--PKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGM 117
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L+D VSD+G+ R D + S
Sbjct: 118 AFLESHQFIHRDLAARNCLVDRDLCVKVSDFGM-----------TRYVLDDQYVSSV--G 164
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
T ++APE + K S +SD W+FG + E+ + G +P+ +
Sbjct: 165 TKFPVKWSAPEVFHYFK------------YSSKSDVWAFGILMWEVFSLGKMPYDLYTNS 212
Query: 374 EIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLAT 425
E+ V + +L P AS +++++ C KRPTF +L++
Sbjct: 213 EVVLKVSQGHRLYRPHLAS-------DTIYQIMYSCWHELPEKRPTFQQLLSS 258
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 42/260 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ +L+K +G+G A V++ RH + K+V + + S L L R
Sbjct: 15 NYRLLKTIGKGNFAKVKL-----------ARHILTGKEVAVKIIDKTQLNSSSLQKLFRE 63
Query: 197 SMWCR-----NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIA 251
+ N+ V+ + L LV + G GR ++ I
Sbjct: 64 VRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIV 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
V H +V ++K NLLLDA ++D+G + + +
Sbjct: 124 SAVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFS---------------NEFTFGNK 168
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS 371
+D +P Y APE ++ K PE D WS G L + +GS+P+ G +
Sbjct: 169 LDAFCGAPPYAAPELFQGKKYD-----------GPEVDVWSLGVILYTLVSGSLPFDGQN 217
Query: 372 AEEIYRAVVKNRKLPPQYAS 391
+E+ V++ + P Y S
Sbjct: 218 LKELRERVLRGKYRIPFYXS 237
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 10 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 61
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 62 K--LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG 119
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ D+ ++
Sbjct: 120 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-----------DNE--YTARQ 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 167 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 214
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 215 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 260
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+GLA +K + C +P Y APE
Sbjct: 173 MIDQQGYIQVTDFGLAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+GLA +K + C +P Y APE
Sbjct: 173 MIDQQGYIKVTDFGLAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA P D + LH+A+ +++L
Sbjct: 2 LGKKLLEAARAGQDDEV------RILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLL 54
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
AGV + R + PLH+A + G + V +LL GAD N +D A H A +
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
+LL AG A+ +RT LH+A+ +V+++L G DVN +++ LH A
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 770 AKSCVGLLLSAGADCNWQDDEGDNAFHIAAD 800
+ V LL+ GAD + Q AF I+ D
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISID 142
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 611 DEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEV 670
D G+ +L A A + D +++ NG + L + +PLHL + + + +
Sbjct: 1 DLGKKLLEAARAGQ-DDEVRILMANGAPFTTDWLGT---SPLHLAAQYGHFSTTEVLLRA 56
Query: 671 ASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGR-ELVRILLTAGAEPTAQDAQNRTAL 729
+ +D T L MAA+ EG +V +LL GA+ A+D TAL
Sbjct: 57 GVSRDARTKVD-----RTPLHMAAS-------EGHANIVEVLLKHGADVNAKDMLKMTAL 104
Query: 730 HIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
H A+ N E+V++++ G DV+ ++ +++ G + +L
Sbjct: 105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 525 ELVEAILEYSQENVDVLDKDGDP---------PLVFALAAGSPECVHALIKRGANVISRL 575
+L+EA + V +L +G P PL A G L++ G + +R
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 576 REGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILEN 635
+ P H+ A G + + LL GAD NA D + LH A + + ++++
Sbjct: 65 KVDRTP--LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 636 GG 637
G
Sbjct: 123 GA 124
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 512 QTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV 571
+T LH+A G A +VE +L++ + V+ D L +A E V LIK GA+V
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 32/201 (15%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
R+T ++ R+ I + H +V ++KP NLLLD + ++D+GL+ I+
Sbjct: 104 RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF 163
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
K SC SPNY APE + + PE D WS G
Sbjct: 164 LKT----------SCG-----SPNYAAPEV-----------INGKLYAGPEVDVWSCGIV 197
Query: 357 LVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQF----K 412
L M G +P+ +++ V + P + S + R + ++ + +Q +
Sbjct: 198 LYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRM--IVADPMQRITIQE 255
Query: 413 ASKRPTFSAMLATFLRHLQEL 433
+ P F+ L +LR ++E+
Sbjct: 256 IRRDPWFNVNLPDYLRPMEEV 276
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 179 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 235
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 236 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 295
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 296 QVSKEVPRRK--------------XLVGTPYWMAPELI------------SRLPYGPEVD 329
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V L + L
Sbjct: 330 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVSP--SLKGFLDRLL 385
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 386 ----VRDPAQRATAAELLKHPFLAKAGPPAS 412
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 47/293 (16%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 18 ESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK 69
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGV 254
+ + + V+ + ++ GS+ ++ G+ L L Q++ A IA G+
Sbjct: 70 --LRHEKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQG 174
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 175 AKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNR 222
Query: 374 EIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 223 EVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 267
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 660 NVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPT 719
+V VK+ V S VN DI G T L AA + VE LL GA+
Sbjct: 20 DVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVE------YLLQHGADVH 69
Query: 720 AQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLS 779
A+D LH A E+ ++++ G VN+ ++ PLH A A+G LLL
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 780 AGADCNWQDDEGDNAFHIAADAAKMIRENL 809
GAD ++ +G+ + D I++ L
Sbjct: 130 HGADPTKKNRDGNTPLDLVKDGDTDIQDLL 159
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLL 601
+ + D L+ A AG E V L +V R EG + H A + + + LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 602 AGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNV 661
GAD +A D G LH A + + + A +++++G ++A L + TPLH A
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKY 121
Query: 662 AVVK 665
+ K
Sbjct: 122 EICK 125
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G LH AC G E+ E ++++ V+V D PL A A G E L++
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 567 RGANVISRLREGFGP 581
GA+ + R+G P
Sbjct: 130 HGADPTKKNRDGNTP 144
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 59 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 115
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 116 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 175
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 176 QVSKEVPRR--------------KXLVGTPYWMAPELI------------SRLPYGPEVD 209
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V + L
Sbjct: 210 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVS------PSLKGFL 261
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 262 DRLLVRDPAQRATAAELLKHPFLAKAGPPAS 292
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 660 NVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPT 719
+V VK+ V S VN DI G T L AA + VE LL GA+
Sbjct: 22 DVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVE------YLLQHGADVH 71
Query: 720 AQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLS 779
A+D LH A E+ ++++ G VN+ ++ PLH A A+G LLL
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 780 AGADCNWQDDEGDNAFHIAADAAKMIRENL 809
GAD ++ +G+ + D I++ L
Sbjct: 132 HGADPTKKNRDGNTPLDLVKDGDTDIQDLL 161
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 542 DKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLL 601
+ + D L+ A AG E V L +V R EG + H A + + + LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 602 AGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNV 661
GAD +A D G LH A + + + A +++++G ++A L + TPLH A
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKY 123
Query: 662 AVVK 665
+ K
Sbjct: 124 EICK 127
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 715 GAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVH--NTIPLHVALARGAKS 772
GA + +R L A+ A DVE VK + VN R++ + PLH A S
Sbjct: 1 GAMGSGNSEADRQLLE-AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVS 58
Query: 773 CVGLLLSAGADCNWQDDEGDNAFHIA 798
V LL GAD + +D G H A
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNA 84
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ G LH AC G E+ E ++++ V+V D PL A A G E L++
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 567 RGANVISRLREGFGP 581
GA+ + R+G P
Sbjct: 132 HGADPTKKNRDGNTP 146
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 57 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 113
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 114 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 173
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 174 QVSKEVPRR--------------KXLVGTPYWMAPELI------------SRLPYGPEVD 207
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V + L
Sbjct: 208 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVS------PSLKGFL 259
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 260 DRLLVRDPAQRATAAELLKHPFLAKAGPPAS 290
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 52 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 108
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 109 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 168
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 169 QVSKEVPRR--------------KXLVGTPYWMAPELI------------SRLPYGPEVD 202
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V + L
Sbjct: 203 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVS------PSLKGFL 254
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 255 DRLLVRDPAQRATAAELLKHPFLAKAGPPAS 285
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 141 LTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDY 200
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 201 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 234
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 235 LLWEIFSLGASPYPGVKIDEEFXRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 287
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 288 PSQRPTFSELVEHLGNLLQ 306
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 102 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 158
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 159 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 218
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 219 QVSKEVPRR--------------KXLVGTPYWMAPELI------------SRLPYGPEVD 252
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V + L
Sbjct: 253 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVS------PSLKGFL 304
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 305 DRLLVRDPAQRATAAELLKHPFLAKAGPPAS 335
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 54/305 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGA-WIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+K ++ LGEG V ++ G G VAVK + + P SG ++D L
Sbjct: 16 LKKIRDLGEGHFGKVSLYCYDPTNDGTGE---MVAVKA--LKADCGPQHRSGWKQEIDIL 70
Query: 194 RRASMWCRNVCTFHGVL--RMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADI 250
R +++ ++ + G + + L LVM+ GS++ + R+ + L Q+L + I
Sbjct: 71 R--TLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQI 126
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE-CDSSRIH 309
G+ LH+ + N+ N+LLD + D+GLA KA PE + R+
Sbjct: 127 CEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLA---------KAVPEGHEYYRVR 177
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-----GS 364
D + + APE K ++ SD WSFG TL E+ T S
Sbjct: 178 EDGDSPVF---WYAPECL----KEYKFYY--------ASDVWSFGVTLYELLTHCDSSQS 222
Query: 365 IPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR------ELWKMIGECLQFKASKRPT 418
P L I + + +L G +PR E++ ++ C + +AS RPT
Sbjct: 223 PPTKFLELIGIAQGQMTVLRLTELLER--GERLPRPDKCPCEVYHLMKNCWETEASFRPT 280
Query: 419 FSAML 423
F ++
Sbjct: 281 FENLI 285
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 519 CRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGA--NVISRLR 576
CR G+A V L+ ++ +++ D G PL +A G V LI RGA NV++R
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 577 EGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENG 636
+ + H+ A HG D +++LL AD NAV++ G LH A A ++ NG
Sbjct: 73 D----TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 637 GCRSM 641
S+
Sbjct: 129 ALVSI 133
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G + LH ACR G + +VE ++ ++V+++ D PL A + G + V L++ A+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVA 622
+ + G P H + GQ +L+ GA + + GE + +A A
Sbjct: 98 INAVNEHGNVP--LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 703 EGRE-LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIP 761
EGR +V +L+ GA + + T LH+A+ ++V+ +L D+N N H +P
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108
Query: 762 LHVALARGAKSCVGLLLSAGA 782
LH A G L++ GA
Sbjct: 109 LHYACFWGQDQVAEDLVANGA 129
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D + LH A +V++++ G +N+ N + PLH+A + G + V LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 782 ADCNWQDDEGDNAFHIA 798
AD N ++ G+ H A
Sbjct: 96 ADINAVNEHGNVPLHYA 112
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N T LHLA G ++V+ +L+Y + +++ +++ G+ PL +A G + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 568 GANV 571
GA V
Sbjct: 128 GALV 131
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADEPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 170 VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL 229
VAVKK+ + ++ + L ++ +R NV + + L +VM+ G L
Sbjct: 48 VAVKKMDLRKQQRRELLFNEVVIMR--DYQHENVVEMYNSYLVGDELWVVMEFLEGGA-L 104
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
R+ EQI + + + LHA GV+ +IK ++LL GR +SD+G A
Sbjct: 105 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 164
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ K R+ + +P + APE + PE D
Sbjct: 165 QVSKEVPRR--------------KXLVGTPYWMAPELI------------SRLPYGPEVD 198
Query: 350 AWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECL 409
WS G ++EM G P+ + + + N LPP+ ++ V + L
Sbjct: 199 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN--LPPRLKNLHKVS------PSLKGFL 250
Query: 410 QFKASKRPTFSAMLATFLRHLQELPRSPPAS 440
+ P A A L+H PPAS
Sbjct: 251 DRLLVRDPAQRATAAELLKHPFLAKAGPPAS 281
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 100 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 159
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 160 LIDEQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 196
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 197 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 250
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 251 --------DLKDLLRNLLQVDLTKR 267
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 115/300 (38%), Gaps = 42/300 (14%)
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGA 248
Q + + S+ N+ F V+ + L ++M+ G N GR + ++ +
Sbjct: 64 QREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQ 123
Query: 249 DIARGVVELHAAGVVCMNIKPSNLLLDAS--GRAVVSDYGLAAILKKPACRKARPECDSS 306
+ GV H+ + ++K N LLD S R + D+G + SS
Sbjct: 124 QLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSK---------------SS 168
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
+HS T+ +P Y APE L +D I +D WS G TL M G+ P
Sbjct: 169 VLHSQPKSTVGTPAYIAPEVL------LRQEYDGKI-----ADVWSCGVTLYVMLVGAYP 217
Query: 367 WAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
+ YR ++ R L +Y+ + I E +I + R + + T
Sbjct: 218 FEDPEEPRDYRKTIQ-RILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPE-IKTH 275
Query: 427 LRHLQELPRSPPASPDTGFTKFSTSNETEPSPASDVEVFQDNPNNLHQLVSEGDVSGVRD 486
L+ LP +TG S EP E + + + Q++SE + VR+
Sbjct: 276 SWFLKNLPADLMNESNTG------SQFQEP------EQPMQSLDTIMQIISEATIPAVRN 323
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 130/325 (40%), Gaps = 73/325 (22%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDN-LRR 195
D+ + +K+G G V W G VAVK +M E D+ + +++ LR
Sbjct: 38 DLNIKEKIGAGSFGTVHR-AEWHGS-------DVAVKILM-----EQDFHAERVNEFLRE 84
Query: 196 ASMWCR----NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQI--LRYGA 248
++ R N+ F G + L +V + GS+ + ++ R L++ L
Sbjct: 85 VAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAY 144
Query: 249 DIARGVVELHAAG--VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
D+A+G+ LH +V ++K NLL+D V D+GL+ + KA S
Sbjct: 145 DVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL-------KASXFLXSK 197
Query: 307 RIHSCMDCTMLSPNYTAPEAW--EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+P + APE EP + +SD +SFG L E+ T
Sbjct: 198 XAAG-------TPEWMAPEVLRDEPSNE--------------KSDVYSFGVILWELATLQ 236
Query: 365 IPWAGLSAEEIYRAVVKN-------RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRP 417
PW L+ ++ AV R L PQ A+I+ E W KRP
Sbjct: 237 QPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPW------------KRP 284
Query: 418 TFSAMLATFLRHLQELPRSPPASPD 442
+F+ ++ LR L + PP D
Sbjct: 285 SFATIM-DLLRPLIKSAVPPPNRSD 308
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 99 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 158
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 159 LIDQQGYIQVTDFGFAKRVKG----RTWTLCG-------------TPEYLAPEI------ 195
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 196 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 249
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 250 --------DLKDLLRNLLQVDLTKR 266
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWTLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 14 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 65
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 66 K--LRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASG 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 124 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQ 170
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 171 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 218
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 219 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 264
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 519 CRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREG 578
CR G+A V L+ ++ +++ D G PL +A G V LI RGA + R
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 579 FGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGC 638
P H+ A HG D +++LL AD NAV++ G LH A A ++ NG
Sbjct: 68 DTP--LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
Query: 639 RSM 641
S+
Sbjct: 126 VSI 128
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G + LH ACR G + +VE ++ ++V+++ D PL A + G + V L++ A+
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 571 VISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVA 622
+ + G P H + GQ +L+ GA + + GE + +A A
Sbjct: 93 INAVNEHGNVP--LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 703 EGRE-LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIP 761
EGR +V +L+ GA + + T LH+A+ ++V+ +L D+N N H +P
Sbjct: 44 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 103
Query: 762 LHVALARGAKSCVGLLLSAGA 782
LH A G L++ GA
Sbjct: 104 LHYACFWGQDQVAEDLVANGA 124
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D + LH A +V++++ G +N+ N + PLH+A + G + V LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 782 ADCNWQDDEGDNAFHIA 798
AD N ++ G+ H A
Sbjct: 91 ADINAVNEHGNVPLHYA 107
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N T LHLA G ++V+ +L+Y + +++ +++ G+ PL +A G + L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 568 GA 569
GA
Sbjct: 123 GA 124
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V ++G D+ L ++M+ G L + G L QI +I +G+ LH+
Sbjct: 87 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKK 145
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK +N+LL G ++D+G+A L ++ + + +P +
Sbjct: 146 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR--------------NTFVGTPFWM 191
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE +K+S ++D WS G T +E+ G P + L ++ + KN
Sbjct: 192 APEV---IKQS---------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN 239
Query: 383 RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP + L + + CL + S RPT +L
Sbjct: 240 N--PPTLEG----NYSKPLKEFVEACLNKEPSFRPTAKELL 274
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 38/209 (18%)
Query: 234 NEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKK 293
N L L+ ++R+ DIA G+ L + + ++ N +L V+D+GL+ K
Sbjct: 130 NPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSR--KI 187
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
+ R C S P W ++ + + + SD W+F
Sbjct: 188 YSGDYYRQGCASK----------------LPVKWLALESLADNLY------TVHSDVWAF 225
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQ 410
G T+ E+ T G P+AG+ EIY ++ +L PP+ E++ ++ +C
Sbjct: 226 GVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECM--------EEVYDLMYQCWS 277
Query: 411 FKASKRPTFSAM---LATFLRHLQELPRS 436
+RP+F+ + L L HL L S
Sbjct: 278 ADPKQRPSFTCLRMELENILGHLSVLSTS 306
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V ++G D+ L ++M+ G L + G L QI +I +G+ LH+
Sbjct: 67 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKK 125
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK +N+LL G ++D+G+A L ++ + + +P +
Sbjct: 126 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR--------------NTFVGTPFWM 171
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE +K+S ++D WS G T +E+ G P + L ++ + KN
Sbjct: 172 APEV---IKQS---------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN 219
Query: 383 RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP + L + + CL + S RPT +L
Sbjct: 220 N--PPTLEG----NYSKPLKEFVEACLNKEPSFRPTAKELL 254
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L L Q++ A IA G+ + V +++ +N+L+ + V+D+GLA +++
Sbjct: 277 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE----- 331
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
++ +TAPEA L+ I +SD WSFG L
Sbjct: 332 --------DNEYTARQGAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILL 371
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKAS 414
E+ T G +P+ G+ E+ V + ++ PP+ P L ++ +C + +
Sbjct: 372 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPE 423
Query: 415 KRPTFSAMLA 424
+RPTF + A
Sbjct: 424 ERPTFEYLQA 433
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 106 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 165
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 166 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 202
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 203 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 256
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 257 --------DLKDLLRNLLQVDLTKR 273
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNE-GRL--TLEQILRYGADIARGVVEL 257
+N+ + G + + + M++ G A+ R++ G L + I Y I G+ L
Sbjct: 65 KNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYL 124
Query: 258 HAAGVVCMNIKPSNLLLDA-SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
H +V +IK N+L++ SG +SD+G + L + I+ C +
Sbjct: 125 HDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRL--------------AGINPCTETFT 170
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+ Y APE + + G +D WS GCT++EM TG P+ L +
Sbjct: 171 GTLQYMAPEIIDKGPR----------GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA 220
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA-TFLR 428
V K+ P+ + + E I +C + KR + +L FL+
Sbjct: 221 MFKVGMFKVHPE----IPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 269
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 34/196 (17%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-I 290
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 125 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 184
Query: 291 LKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDA 350
L K E DS +H+ L + A E+ + K + +SD
Sbjct: 185 LDK--------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDV 221
Query: 351 WSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGEC 408
WSFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 222 WSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKC 274
Query: 409 LQFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 275 WHPKAEMRPSFSELVS 290
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 31/226 (13%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWC 200
++K+GEG +G VA+K+V + ++ E S + +
Sbjct: 7 LEKIGEG------TYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
+N+ H VL D L LV + C ++ G L E + + + +G+ H+
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR 120
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
V+ ++KP NLL++ +G ++++GLA P C +++
Sbjct: 121 NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV--------------RCYSAEVVTLW 166
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y P+ LF A S D WS GC E+ P
Sbjct: 167 YRPPDV---------LF--GAKLYSTSIDMWSAGCIFAELANAGRP 201
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A R+ +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFA-----------------KRVKGRTWXLXGTPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 30/180 (16%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFAEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHS---------VAVKKVMIAEEMEPDWLSG 188
+K +++LG+G VE+ CR+ VAVKK+ + E
Sbjct: 12 LKFLQQLGKGNFGSVEM-----------CRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 189 QLDNLRRASMWCRNVCTFHGVLRMDS--CLGLVMDRC-YGSVQLAMQRNEGRLTLEQILR 245
+++ L+ S+ N+ + GV L L+M+ YGS++ +Q+++ R+ ++L+
Sbjct: 61 EIEILK--SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ 118
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y + I +G+ L + ++ N+L++ R + D+GL +L + E
Sbjct: 119 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGE 178
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT--- 362
S I + APE+ K S+ SD WSFG L E+ T
Sbjct: 179 SPIF-----------WYAPESLTESKFSV------------ASDVWSFGVVLYELFTYIE 215
Query: 363 -------------GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGEC 408
G+ + + + N +LP P G P E++ ++ EC
Sbjct: 216 KSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-------GCPDEIYMIMTEC 268
Query: 409 LQFKASKRPTF 419
++RP+F
Sbjct: 269 WNNNVNQRPSF 279
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIKVADFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 8 CSVCQTRYNEKERVPLLLQCGHGFCKECLSRMFSASTDTTLSCPRCRHVSVVGNSVTALR 67
C +C + E++ P LL CGH C++CL ++ ++S + + CP C ++ + S+T L
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN-GVRCPFCSKITRI-TSLTQLT 75
Query: 68 KNFAVL 73
N VL
Sbjct: 76 DNLTVL 81
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 132/325 (40%), Gaps = 61/325 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 19 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 72
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 73 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ A+IA G+ L+A V N+ N ++ + D+G+ I + RK
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG--- 189
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + APE+ + D + + SD WSFG L E+ +
Sbjct: 190 ----------GKGLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITS 227
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ + V+ L P P + ++ C QF + RPTF
Sbjct: 228 LAEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPNMRPTFL 280
Query: 421 AMLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 281 EIVNLLKDDLH------PSFPEVSF 299
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 8 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 59
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 60 K--LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASG 117
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 118 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQ 164
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 165 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 212
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 213 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 258
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 33/243 (13%)
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNE-GRL--TLEQILRYGADIARGVVEL 257
+N+ + G + + + M++ G A+ R++ G L + I Y I G+ L
Sbjct: 79 KNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYL 138
Query: 258 HAAGVVCMNIKPSNLLLDA-SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
H +V +IK N+L++ SG +SD+G + L + I+ C +
Sbjct: 139 HDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRL--------------AGINPCTETFT 184
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+ Y APE + + G +D WS GCT++EM TG P+ L +
Sbjct: 185 GTLQYMAPEIIDKGPR----------GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA 234
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA-TFLRHLQELPR 435
V K+ P+ + + E I +C + KR + +L FL+ + +
Sbjct: 235 MFKVGMFKVHPE----IPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSKKKK 290
Query: 436 SPP 438
+ P
Sbjct: 291 TQP 293
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 132/325 (40%), Gaps = 61/325 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 20 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 73
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 74 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 133
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ A+IA G+ L+A V N+ N ++ + D+G+ I + RK
Sbjct: 134 IQMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG--- 190
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + APE+ + D + + SD WSFG L E+ +
Sbjct: 191 ----------GKGLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITS 228
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ + V+ L P P + ++ C QF + RPTF
Sbjct: 229 LAEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPNMRPTFL 281
Query: 421 AMLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 282 EIVNLLKDDLH------PSFPEVSF 300
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 125 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 184
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 185 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 222
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 223 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 275
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 276 HPKAEMRPSFSELVS 290
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +LH +V ++KP N+LLD G +SD GLA + + K R
Sbjct: 291 YAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR----- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + Y APE VK F SP D W+ GC L EM G
Sbjct: 346 ----------VGTVGYMAPEV---VKNERYTF-------SP--DWWALGCLLYEMIAGQS 383
Query: 366 PW----AGLSAEEIYRAVVKNRKLPPQYAS 391
P+ + EE+ R V +++P +Y+
Sbjct: 384 PFQQRKKKIKREEVERLV---KEVPEEYSE 410
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 134 NSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 193
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 194 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 230
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 231 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 284
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 285 --------DLKDLLRNLLQVDLTKR 301
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 47/293 (16%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 18 ESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK 69
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGV 254
+ + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 70 IRH--EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQG 174
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 175 AKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNR 222
Query: 374 EIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 223 EVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 267
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 6 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 57
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 58 KLRH--EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASG 115
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 116 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQ 162
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 163 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 210
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 211 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 256
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 108 NSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 167
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 168 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 204
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 205 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 258
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 259 --------DLKDLLRNLLQVDLTKR 275
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 129 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 188
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 189 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 226
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 227 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 279
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 280 HPKAEMRPSFSELVS 294
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 124 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 184 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 221
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 222 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 274
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 275 HPKAEMRPSFSELVS 289
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V ++G D+ L ++M+ G L + G L QI +I +G+ LH+
Sbjct: 67 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKK 125
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK +N+LL G ++D+G+A L ++ + + +P +
Sbjct: 126 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR--------------NXFVGTPFWM 171
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE +K+S ++D WS G T +E+ G P + L ++ + KN
Sbjct: 172 APEV---IKQS---------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN 219
Query: 383 RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP + L + + CL + S RPT +L
Sbjct: 220 N--PPTLEG----NYSKPLKEFVEACLNKEPSFRPTAKELL 254
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 127/310 (40%), Gaps = 64/310 (20%)
Query: 138 VKLVKKLGEGRRAGVEVWGA-WIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+K ++ LGEG V ++ G G VAVK + + P SG ++D L
Sbjct: 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEM---VAVKA--LKADAGPQHRSGWKQEIDIL 87
Query: 194 RRASMWCRNVCTFHGVLR--MDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADI 250
R +++ ++ + G + L LVM+ GS++ + R+ + L Q+L + I
Sbjct: 88 R--TLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQI 143
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE-CDSSRIH 309
G+ LHA + ++ N+LLD + D+GLA KA PE + R+
Sbjct: 144 CEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA---------KAVPEGHEXYRVR 194
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTG------ 363
D + + APE K ++ SD WSFG TL E+ T
Sbjct: 195 EDGDSPVF---WYAPECL----KEYKFYY--------ASDVWSFGVTLYELLTHCDSSQS 239
Query: 364 ---------SIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKA 413
I ++ + + + +LP P P E++ ++ C + +A
Sbjct: 240 PPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD-------KCPAEVYHLMKNCWETEA 292
Query: 414 SKRPTFSAML 423
S RPTF ++
Sbjct: 293 SFRPTFENLI 302
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 47/293 (16%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 18 ESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK 69
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGV 254
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 70 --LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
+ V +++ +N+L+ + V+D+GLA +++ ++
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEYTARQG 174
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 175 AKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNR 222
Query: 374 EIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 223 EVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 267
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +LH +V ++KP N+LLD G +SD GLA + + K R
Sbjct: 291 YAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR----- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + Y APE VK F SP D W+ GC L EM G
Sbjct: 346 ----------VGTVGYMAPEV---VKNERYTF-------SP--DWWALGCLLYEMIAGQS 383
Query: 366 PW----AGLSAEEIYRAVVKNRKLPPQYAS 391
P+ + EE+ R V +++P +Y+
Sbjct: 384 PFQQRKKKIKREEVERLV---KEVPEEYSE 410
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 124 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 184 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 221
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 222 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 274
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 275 HPKAEMRPSFSELVS 289
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE + K
Sbjct: 173 IIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEII--ISK 213
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
G + D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 214 ----------GYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
+VM+ G + EG +T ++ + AD + + H G++ ++KP+N+++ A+
Sbjct: 110 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 169
Query: 278 GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLF 337
V D+G+ AR DS + + + Y +PE
Sbjct: 170 NAVKVMDFGI-----------ARAIADSGNSVTQTAAVIGTAQYLSPEQAR--------- 209
Query: 338 WDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPP 387
+ SD +S GC L E+ TG P+ G S + V+ +PP
Sbjct: 210 ---GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP 256
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 122 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 181
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 182 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 219
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 220 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 272
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 273 HPKAEMRPSFSELVS 287
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DV ++ + + PLH+A G V LLL AGAD N QD G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 792 DNAFHIAAD 800
AF I+ D
Sbjct: 73 KTAFDISID 81
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+VK++L
Sbjct: 6 LGKKLLEAARAGQDDEV------RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+AG DVN ++ +++ G + +L
Sbjct: 60 EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 588 AYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
A GQ D +R L+ GAD A D G + LH A + + ++LE G
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHAL 564
++ +G T LHLA R G E+V+ +LE + +V+ DK G ++ G+ + L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 173 MIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 17 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 68
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + + V+ + ++ GS+ ++ G+ L L Q++ A IA G
Sbjct: 69 K--LRHEKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASG 126
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ +
Sbjct: 127 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEXTARQ 173
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 174 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 221
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 222 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 267
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 7 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 58
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 59 K--LRHEKLVQLYAVVSEEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG 116
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ +
Sbjct: 117 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEXTARQ 163
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 164 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 211
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 212 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 257
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 173 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 174 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 174 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA
Sbjct: 123 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA--- 179
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + + +H+ L + A E+ + K + +SD W
Sbjct: 180 ------RDMYDKEXXSVHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 220
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 221 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 273
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 274 HPKAEMRPSFSELVS 288
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 174 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V ++G D+ L ++M+ G L + G L QI +I +G+ LH+
Sbjct: 82 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKK 140
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK +N+LL G ++D+G+A L ++ + + +P +
Sbjct: 141 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR--------------NXFVGTPFWM 186
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE +K+S ++D WS G T +E+ G P + L ++ + KN
Sbjct: 187 APEV---IKQS---------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN 234
Query: 383 RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP + L + + CL + S RPT +L
Sbjct: 235 N--PPTLEG----NYSKPLKEFVEACLNKEPSFRPTAKELL 269
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIKVADFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIKVADFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVN-IRNVHNTIPLHV 764
E R L+ AG + D +N T LH A++ N ++LVK + G V+ + N+ PLH
Sbjct: 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82
Query: 765 ALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAA 799
A +G S V L+ GAD + D EG + H+AA
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 26/222 (11%)
Query: 597 RELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSM--AILNSKELTPLHL 654
REL+ AG D D E ++LH A D + G LNS TPLH
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS---TPLHW 82
Query: 655 CVATWNVAVVKRWVEV-ASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLT 713
++++V + ++ A P ++ID G C+ A + H +V L+
Sbjct: 83 ATRQGHLSMVVQLMKYGADP----SLIDGEG----CSCIHLAAQFGHT----SIVAYLIA 130
Query: 714 AGAEPTAQDAQNRTALHIASM-ANDVELVKIILDAGVDVNIRN-VHNTIPLHVALARGAK 771
G + D T L A+ + V+ +++L V VN+ + H LH A+ G
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 772 SCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLEWLI 813
+ + LLL AGA+ + Q+ +G++A +A R+N+ W+I
Sbjct: 191 TVISLLLEAGANVDAQNIKGESALDLAKQ-----RKNV-WMI 226
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
+V L+ GA+P+ D + + +H+A+ +V ++ G DV++ + + PL A
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
Query: 767 ARG-AKSCVGLLLSAGADCNWQDDEGDN-AFHIAADAAKMIRENLEWLIVMLSHPDAAVE 824
R + LLL+ N D N A H A A +I +L A V+
Sbjct: 151 YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT------VISLLLEAGANVD 204
Query: 825 VRNHSGKTLRDFLEGLPREWISEDLMEALMNRG 857
+N G++ D + W+ L EA +G
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 37.4 bits (85), Expect = 0.065, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFA-LAAGSPECVHALIK 566
+ +G + +HLA + G +V ++ Q+ VD++D++G PL++A S + L+
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 567 RGANVISRLREGFGPSVA-HVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKK 624
NV L + + + A H G + LL AGA+ +A + +GES L A +K
Sbjct: 165 --FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Query: 513 TALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVI 572
T LH A R+G +V +++Y + ++D +G + A G V LI +G +V
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 573 SRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDD-EGESVLHRAVAKKYTDCAIV 631
+ G P + H D R LL N D + LH AV T +
Sbjct: 137 MMDQNGMTPLMWAAYRTH-SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 632 ILENGG 637
+LE G
Sbjct: 196 LLEAGA 201
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 38/268 (14%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ ++VK LGEG V++ A+ + + KKV+ +M+ + ++ LR
Sbjct: 5 NYQIVKTLGEGSFGKVKL--AYHTTTGQKVALKIINKKVLAKSDMQ-GRIEREISYLRL- 60
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL---AMQRNEGRLTLEQILRYGADIARG 253
+ ++ + V++ + +V++ Y +L +QR+ +++ ++ R+ I
Sbjct: 61 -LRHPHIIKLYDVIKSKDEIIMVIE--YAGNELFDYIVQRD--KMSEQEARRFFQQIISA 115
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
V H +V ++KP NLLLD ++D+GL+ I+ K SC
Sbjct: 116 VEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKT----------SCG- 164
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
SPNY APE + PE D WS G L M +P+ S
Sbjct: 165 ----SPNYAAPEVIS-----------GKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP 209
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPREL 401
+++ + P++ S G+ + +
Sbjct: 210 VLFKNISNGVYTLPKFLSPGAAGLIKRM 237
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 38/268 (14%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ ++VK LGEG V++ A+ + + KKV+ +M+ + ++ LR
Sbjct: 14 NYQIVKTLGEGSFGKVKL--AYHTTTGQKVALKIINKKVLAKSDMQ-GRIEREISYLRL- 69
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL---AMQRNEGRLTLEQILRYGADIARG 253
+ ++ + V++ + +V++ Y +L +QR+ +++ ++ R+ I
Sbjct: 70 -LRHPHIIKLYDVIKSKDEIIMVIE--YAGNELFDYIVQRD--KMSEQEARRFFQQIISA 124
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
V H +V ++KP NLLLD ++D+GL+ I+ K SC
Sbjct: 125 VEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKT----------SCG- 173
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
SPNY APE + PE D WS G L M +P+ S
Sbjct: 174 ----SPNYAAPEVIS-----------GKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP 218
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPREL 401
+++ + P++ S G+ + +
Sbjct: 219 VLFKNISNGVYTLPKFLSPGAAGLIKRM 246
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + N+ N L+ + V+D+GL+ ++
Sbjct: 359 LLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT---------- 408
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ K S+ +SD W+FG L E+ T
Sbjct: 409 GDTYTAHAGAKFPI---KWTAPESLAYNKFSI------------KSDVWAFGVLLWEIAT 453
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 454 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 506
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 507 EIHQAFETMFQE 518
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + N+ N L+ + V+D+GL+ ++
Sbjct: 317 LLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT---------- 366
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 367 GDTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 411
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 412 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 464
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 465 EIHQAFETMFQE 476
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + +M G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYQMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 124 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 183
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 184 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 221
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 222 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 274
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 275 HPKAEMRPSFSELVS 289
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 106 NSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 165
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 166 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 202
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 203 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 256
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 257 --------DLKDLLRNLLQVDLTKR 273
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 34/266 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ ++VK LGEG V++ A+ + + KKV+ +M+ + ++ LR
Sbjct: 9 NYQIVKTLGEGSFGKVKL--AYHTTTGQKVALKIINKKVLAKSDMQ-GRIEREISYLRL- 64
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSV-QLAMQRNEGRLTLEQILRYGADIARGVV 255
+ ++ + V++ + +V++ + +QR+ +++ ++ R+ I V
Sbjct: 65 -LRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRD--KMSEQEARRFFQQIISAVE 121
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
H +V ++KP NLLLD ++D+GL+ I+ K SC
Sbjct: 122 YCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKT----------SCG--- 168
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
SPNY APE + PE D WS G L M +P+ S +
Sbjct: 169 --SPNYAAPEVIS-----------GKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL 215
Query: 376 YRAVVKNRKLPPQYASIVGVGIPREL 401
++ + P++ S G+ + +
Sbjct: 216 FKNISNGVYTLPKFLSPGAAGLIKRM 241
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 38/268 (14%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
+ ++VK LGEG V++ A+ + + KKV+ +M+ + ++ LR
Sbjct: 15 NYQIVKTLGEGSFGKVKL--AYHTTTGQKVALKIINKKVLAKSDMQ-GRIEREISYLRL- 70
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQL---AMQRNEGRLTLEQILRYGADIARG 253
+ ++ + V++ + +V++ Y +L +QR+ +++ ++ R+ I
Sbjct: 71 -LRHPHIIKLYDVIKSKDEIIMVIE--YAGNELFDYIVQRD--KMSEQEARRFFQQIISA 125
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
V H +V ++KP NLLLD ++D+GL+ I+ K SC
Sbjct: 126 VEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKT----------SCG- 174
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
SPNY APE + PE D WS G L M +P+ S
Sbjct: 175 ----SPNYAAPEVIS-----------GKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP 219
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPREL 401
+++ + P++ S G+ + +
Sbjct: 220 VLFKNISNGVYTLPKFLSPGAAGLIKRM 247
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L L Q++ A IA G+ + V +++ +N+L+ + V+D+GLA +++
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE----- 165
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
++ +TAPEA L+ I +SD WSFG L
Sbjct: 166 --------DNEYTARQGAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILL 205
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKAS 414
E+ T G +P+ G+ E+ V + ++ PP+ P L ++ +C +
Sbjct: 206 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPE 257
Query: 415 KRPTFSAMLA 424
+RPTF + A
Sbjct: 258 ERPTFEYLQA 267
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 145 LTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 205 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 238
Query: 356 TLVEMCT-GSIPWAGLSAEEIY--RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + R R P Y + E+++ + +C +
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 291
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 292 PSQRPTFSELVEHLGNLLQ 310
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 126/314 (40%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ T G D L ++++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIITLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 205 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 249
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 250 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 303
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 304 PTFKQLVEDLDRIL 317
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGRL-TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 123 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 182
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 183 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 220
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 221 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 273
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 274 HPKAEMRPSFSELVS 288
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L L Q++ A IA G+ + V +++ +N+L+ + V+D+GLA +++
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE----- 165
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
++ +TAPEA L+ I +SD WSFG L
Sbjct: 166 --------DNEYTARQGAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILL 205
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKAS 414
E+ T G +P+ G+ E+ V + ++ PP+ P L ++ +C +
Sbjct: 206 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPE 257
Query: 415 KRPTFSAMLA 424
+RPTF + A
Sbjct: 258 ERPTFEYLQA 267
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L L Q++ A IA G+ + V +++ +N+L+ + V+D+GLA +++
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE----- 165
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
++ +TAPEA L+ I +SD WSFG L
Sbjct: 166 --------DNEYTARQGAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILL 205
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKAS 414
E+ T G +P+ G+ E+ V + ++ PP+ P L ++ +C +
Sbjct: 206 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPE 257
Query: 415 KRPTFSAMLA 424
+RPTF + A
Sbjct: 258 ERPTFEYLQA 267
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + N+ N L+ + V+D+GL+ ++
Sbjct: 320 LLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT---------- 369
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ K S+ +SD W+FG L E+ T
Sbjct: 370 GDTYTAHAGAKFPI---KWTAPESLAYNKFSI------------KSDVWAFGVLLWEIAT 414
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 415 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 467
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 468 EIHQAFETMFQE 479
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 40/214 (18%)
Query: 210 LRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKP 269
L ++ C M+R + NE R + QI+ G++ LH+ G++ ++
Sbjct: 88 LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIIT-------GMLYLHSHGILHRDLTL 140
Query: 270 SNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEP 329
SNLLL + ++D+GLA LK P K C +PNY +PE
Sbjct: 141 SNLLLTRNMNIKIADFGLATQLKMPH-EKHYTLCG-------------TPNYISPEIATR 186
Query: 330 VKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQY 389
L ESD WS GC + G P+ + + VV P +
Sbjct: 187 SAHGL------------ESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSF 234
Query: 390 ASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
SI E +I + L+ + R + S++L
Sbjct: 235 LSI-------EAKDLIHQLLRRNPADRLSLSSVL 261
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 38/295 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDN-LRR 195
++K VK LG G G G W+ G+ + VA+K ++ E P +D L
Sbjct: 39 ELKRVKVLGSGA-FGTVYKGIWVPEGE-TVKIPVAIK--ILNETTGPKANVEFMDEALIM 94
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
ASM ++ GV + + +G + + ++ + + +L + IA+G++
Sbjct: 95 ASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMM 154
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ + ++D+GLA +L E D
Sbjct: 155 YLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL----------EGDEK--------- 195
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
Y A P+K + L + +SD WS+G T+ E+ T G P+ G+ E
Sbjct: 196 ----EYNADGGKMPIK-WMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE 250
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLR 428
I + K +LP P +I +++ ++ +C A RP F + A F R
Sbjct: 251 IPDLLEKGERLPQPPICTI-------DVYMVMVKCWMIDADSRPKFKELAAEFSR 298
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R +S + + Y +PE +KS S SD W+ GC + ++ G
Sbjct: 189 ARANSFVG----TAQYVSPELL--TEKS----------ASKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 233 PFRAGNEYLIFQKIIK 248
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 122 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 181
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 182 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 219
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 220 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 272
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 273 HPKAEMRPSFSELVS 287
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 120/291 (41%), Gaps = 47/291 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 187 LRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGNMSPEAFLQEAQVMKK-- 236
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVE 256
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 237 LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY 296
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
+ V +++ +N+L+ + V+D+GL +++ ++
Sbjct: 297 VERMNYVHRDLRAANILVGENLVCKVADFGLGRLIE-------------DNEYTARQGAK 343
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEI 375
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+ E+
Sbjct: 344 FPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREV 391
Query: 376 YRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 392 LDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 434
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 42/214 (19%)
Query: 168 HSVAVKKVMI-AEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRM------DSCLGLVM 220
H AVK + + AE + P+ L + RR + R V ++ + S + LV
Sbjct: 120 HEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVF 179
Query: 221 DRC-------YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLL 273
D Y + ++A+ E R + +L V LHA +V ++KP N+L
Sbjct: 180 DLMRKGELFDYLTEKVALSEKETRSIMRSLLE-------AVSFLHANNIVHRDLKPENIL 232
Query: 274 LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKS 333
LD + + +SD+G + L+ K R C +P Y APE +K S
Sbjct: 233 LDDNMQIRLSDFGFSCHLE--PGEKLRELCG-------------TPGYLAPEI---LKCS 274
Query: 334 LNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
++ + G E D W+ G L + GS P+
Sbjct: 275 MD---ETHPGYGKEVDLWACGVILFTLLAGSPPF 305
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA
Sbjct: 124 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA--- 180
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + + +H+ L + A E+ + K + +SD W
Sbjct: 181 ------RDMYDKEYYSVHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 221
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 222 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 274
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 275 HPKAEMRPSFSELVS 289
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DVN ++ PLH+A G V +LL AGAD N QD G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 792 DNAFHIAAD 800
AF I+ D
Sbjct: 69 KTAFDISID 77
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+V+++L
Sbjct: 2 LGKKLLEAARAGQDDEV------RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
AG DVN ++ +++ G + +L A
Sbjct: 56 KAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 549 LVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNA 608
L+ A AG + V L+ GA+V ++ ++G+ P H+ A G + + LL AGAD NA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTP--LHLAAREGHLEIVEVLLKAGADVNA 63
Query: 609 VDDEGESVLHRAVAKKYTDCAIVI 632
D G++ ++ D A ++
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 34.7 bits (78), Expect = 0.49, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R G + V IL + +V+ DKDG PL A G E V L+K GA+V ++
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV--NAQD 65
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGA 604
FG + + +G D + E+L A
Sbjct: 66 KFGKTAFDISIDNGNED-LAEILQKAA 91
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ DG T LHLA R G E+VE +L+ + +V+ DK G ++ G+ + L K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 124/312 (39%), Gaps = 49/312 (15%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++++ K LG G V V G G+ VAVK M+ D + L+
Sbjct: 38 NNLQFGKTLGAGAFGKV-VEATAFGLGKEDAVLKVAVK--MLKSTAHADEKEALMSELKI 94
Query: 196 ASMWCRN--------VCTFHG---VLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQI 243
S ++ CT G V+ C G +++ + + + +GR L L +
Sbjct: 95 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDL 154
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPEC 303
L + + +A+G+ L + + ++ N+LL A + D+GLA +
Sbjct: 155 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN---------- 204
Query: 304 DSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT- 362
DS+ I + N P W + + + + +SD WS+G L E+ +
Sbjct: 205 DSNYI--------VKGNARLPVKWMAPESIFDCVY------TVQSDVWSYGILLWEIFSL 250
Query: 363 GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ + +VK+ + P +A P+ ++ ++ C + + RPTF
Sbjct: 251 GLNPYPGILVNSKFYKLVKDGYQMAQPAFA-------PKNIYSIMQACWALEPTHRPTFQ 303
Query: 421 AMLATFLRHLQE 432
+ + QE
Sbjct: 304 QICSFLQEQAQE 315
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 55/289 (19%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQG-RCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++KL++ +G+G V + G + G +C + A + +AE + + LR
Sbjct: 194 ELKLLQTIGKGEFGDV-MLGDYRGNKVAVKCIKNDATAQAFLAE-------ASVMTQLRH 245
Query: 196 ASMWCRNVCTFHGVLRMDSC-LGLVMDRCYGSVQLAMQRNEGRLTL--EQILRYGADIAR 252
+ N+ GV+ + L +V + + R+ GR L + +L++ D+
Sbjct: 246 S-----NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCE 300
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
+ L V ++ N+L+ A VSD+GL + S
Sbjct: 301 AMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL-----------------TKEASSTQ 343
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
D L +TAPEA K S +SD WSFG L E+ + G +P+ +
Sbjct: 344 DTGKLPVKWTAPEALREKK------------FSTKSDVWSFGILLWEIYSFGRVPYPRIP 391
Query: 372 AEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+++ V K K+ P G P ++ ++ C A+ RPTF
Sbjct: 392 LKDVVPRVEKGYKMDAPD-------GCPPAVYDVMKNCWHLDAATRPTF 433
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 62/283 (21%)
Query: 158 WIGGGQGRCRHSVAVKKVMIAEEMEPDW-LSGQLDNLRR-----ASMWCRNVCTFHGVLR 211
WIG VAVK A +PD +S ++N+R+ A + N+ GV
Sbjct: 28 WIG-------DEVAVK----AARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL 76
Query: 212 MDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCM---NIK 268
+ L LVM+ G L + R+ + ++ + IARG+ LH +V + ++K
Sbjct: 77 KEPNLCLVMEFARGG-PLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK 135
Query: 269 PSNLLL-------DASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
SN+L+ D S + + ++D+GLA R ++++ + ++P
Sbjct: 136 SSNILILQKVENGDLSNKILKITDFGLA-----------REWHRTTKMSAAGAYAWMAP- 183
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
E ++ S+ S SD WS+G L E+ TG +P+ G+ + V
Sbjct: 184 -------EVIRASM---------FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVA 227
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
N+ P + P K++ +C RP+F+ +L
Sbjct: 228 MNKLALP-----IPSTCPEPFAKLMEDCWNPDPHSRPSFTNIL 265
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 183 RNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 242
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
E DS +H+ L + A E+ + K + +SD W
Sbjct: 243 YDK-------EFDS--VHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 280
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 281 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 333
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 334 HPKAEMRPSFSELVS 348
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 119 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 178
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 179 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 216
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 217 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 269
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 270 HPKAEMRPSFSELVS 284
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 142 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 201
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 202 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 239
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 240 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 292
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 293 HPKAEMRPSFSELVS 307
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA
Sbjct: 116 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA--- 172
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + + +H+ L + A E+ + K + +SD W
Sbjct: 173 ------RDMYDKEYYSVHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 213
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 214 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 266
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 267 HPKAEMRPSFSELVS 281
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 38/236 (16%)
Query: 204 CTFHG---VLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVELHA 259
CT G V+ C G +++ + + + +GR L L +L + + +A+G+ L +
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLAS 178
Query: 260 AGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSP 319
+ ++ N+LL A + D+GLA + DS+ I +
Sbjct: 179 KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN----------DSNYI--------VKG 220
Query: 320 NYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRA 378
N P W + + + + +SD WS+G L E+ + G P+ G+ +
Sbjct: 221 NARLPVKWMAPESIFDCVY------TVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYK 274
Query: 379 VVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+VK+ + P +A P+ ++ ++ C + + RPTF + + QE
Sbjct: 275 LVKDGYQMAQPAFA-------PKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 323
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA +
Sbjct: 121 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 180
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + L + A E+ + K + +SD W
Sbjct: 181 YDKEYYSVHNKTGAK----------LPVKWMALESLQTQK------------FTTKSDVW 218
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 219 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 271
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 272 HPKAEMRPSFSELVS 286
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 38/295 (12%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDN-LRR 195
++K VK LG G G G W+ G+ + VA+K ++ E P +D L
Sbjct: 16 ELKRVKVLGSGA-FGTVYKGIWVPEGET-VKIPVAIK--ILNETTGPKANVEFMDEALIM 71
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
ASM ++ GV + + +G + + ++ + + +L + IA+G++
Sbjct: 72 ASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMM 131
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L +V ++ N+L+ + ++D+GLA +L E D
Sbjct: 132 YLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL----------EGDEKE-------- 173
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
Y A P+K + L + +SD WS+G T+ E+ T G P+ G+ E
Sbjct: 174 -----YNADGGKMPIK-WMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE 227
Query: 375 IYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLR 428
I + K +LP P +I +++ ++ +C A RP F + A F R
Sbjct: 228 IPDLLEKGERLPQPPICTI-------DVYMVMVKCWMIDADSRPKFKELAAEFSR 275
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +V++ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y APE
Sbjct: 174 LIDQQGYIKVADFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 173 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR Y A I LH+ ++ ++KP NL
Sbjct: 114 NSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 173
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
++D G V+D+G A +K + C +P Y APE
Sbjct: 174 MIDQQGYIKVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPEI------ 210
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 211 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 264
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 265 --------DLKDLLRNLLQVDLTKR 281
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 233 RNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
RNE T++ ++ +G +A+G+ L + V ++ N +LD V+D+GLA
Sbjct: 143 RNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA--- 199
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ + + +H+ L + A E+ + K + +SD W
Sbjct: 200 ------RDMYDKEYYSVHNKTGAK-LPVKWMALESLQTQK------------FTTKSDVW 240
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRK-LPPQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G+ P+ ++ +I +++ R+ L P+Y P L++++ +C
Sbjct: 241 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-------PDPLYEVMLKCW 293
Query: 410 QFKASKRPTFSAMLA 424
KA RP+FS +++
Sbjct: 294 HPKAEMRPSFSELVS 308
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 120/300 (40%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 25 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 75
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 76 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 133
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + ++S + S
Sbjct: 134 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEETSSVGS---- 181
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 182 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 228
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 229 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 132/324 (40%), Gaps = 59/324 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 19 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 72
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 73 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPEC 303
++ A+IA G+ L+A V ++ N ++ + D+G+ + E
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIX---------ET 183
Query: 304 DSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT- 362
D R +L + APE+ + D + + SD WSFG L E+ +
Sbjct: 184 DXXRKGGK---GLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITSL 228
Query: 363 GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSA 421
P+ GLS E++ + V+ L P P + ++ C QF + RPTF
Sbjct: 229 AEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPNMRPTFLE 281
Query: 422 MLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 282 IVNLLKDDLH------PSFPEVSF 299
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D + + LG+G+ V + + R + KV+ ++E + QL
Sbjct: 13 DFDIGRPLGKGKFGNVYL-------ARERQSKFILALKVLFKTQLEKAGVEHQLRREVEI 65
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ R ++ Y ++A
Sbjct: 66 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SRFDEQRTATYITELANA 124
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+ D
Sbjct: 125 LSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRR--------------D 168
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+ +Y PE E D+ + D WS G E G P+ + +
Sbjct: 169 TLCGTLDYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGMPPFEAHTYQ 216
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E YR + + P + + +I L+ AS+R T + +L
Sbjct: 217 ETYRRISRVEFTFPDF-------VTEGARDLISRLLKHNASQRLTLAEVL 259
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 47/293 (16%)
Query: 136 HDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++L KLG+G V W+G G R ++ K + M P+ + +++
Sbjct: 18 ESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMKK 69
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGV 254
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G+
Sbjct: 70 --LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
+ V ++ +N+L+ + V+D+GLA +++ ++
Sbjct: 128 AYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIE-------------DNEYTARQG 174
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 175 AKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNR 222
Query: 374 EIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + +RPTF + A
Sbjct: 223 EVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKDPEERPTFEYLQA 267
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L L+++ G EG + Y A+I+ + LH G++ ++KP N++L+
Sbjct: 96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLN 155
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C+++ D + H+ C + Y APE + +S
Sbjct: 156 HQGHVKLTDFGL--------CKESI--HDGTVTHTF--CGTIE--YMAPEI---LMRS-- 196
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPP 387
G + D WS G + +M TG+ P+ G + ++ ++K + LPP
Sbjct: 197 -------GHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPP 242
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 126/314 (40%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ + LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 205 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 249
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 250 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 303
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 304 PTFKQLVEDLDRIL 317
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 129/316 (40%), Gaps = 58/316 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR-------- 205
Query: 298 KARPECDSSRIHSCMDCT--MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
D + I + T L + APEA LF D + + +SD WSFG
Sbjct: 206 ------DINNIDYYKNTTNGRLPVKWMAPEA---------LF--DRV-YTHQSDVWSFGV 247
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS 414
+ E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S
Sbjct: 248 LMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPS 301
Query: 415 KRPTFSAMLATFLRHL 430
+RPTF ++ R L
Sbjct: 302 QRPTFKQLVEDLDRIL 317
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A++ + +H+ G + ++KP N+LLD SG ++D+G + K + CD+
Sbjct: 178 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR----CDT 233
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + +P+Y +PE V KS D G E D WS G L EM G
Sbjct: 234 A---------VGTPDYISPE----VLKSQG--GDGYYG--RECDWWSVGVFLYEMLVGDT 276
Query: 366 PWAGLSAEEIYRAVVKNRK 384
P+ S Y ++ ++
Sbjct: 277 PFYADSLVGTYSKIMNHKN 295
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A++ + +H+ G++ ++KP N+LLD G ++D+G C K D
Sbjct: 179 YTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFG--------TCMK----MDE 226
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + C D + +P+Y +PE V KS D G E D WS G L EM G
Sbjct: 227 TGMVHC-DTAVGTPDYISPE----VLKSQG--GDGYYG--RECDWWSVGVFLFEMLVGDT 277
Query: 366 PWAGLSAEEIYRAVV--KNRKLPPQYASI 392
P+ S Y ++ KN P+ A I
Sbjct: 278 PFYADSLVGTYSKIMDHKNSLCFPEDAEI 306
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 47/294 (15%)
Query: 135 HHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR 194
++L KLG+G V W+G G R ++ K + M P+ + ++
Sbjct: 14 RESLRLEVKLGQGCFGEV-----WMGTWNGTTRVAI---KTLKPGTMSPEAFLQEAQVMK 65
Query: 195 RASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARG 253
+ + + V+ + + GS+ ++ G+ L L Q++ A IA G
Sbjct: 66 KLRH--EKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASG 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ + V +++ +N+L+ + V+D+GLA +++ +
Sbjct: 124 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-------------DNEWTARQ 170
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSA 372
+TAPEA L+ I +SD WSFG L E+ T G +P+ G+
Sbjct: 171 GAKFPIKWTAPEA--------ALYGRFTI----KSDVWSFGILLTELTTKGRVPYPGMVN 218
Query: 373 EEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLA 424
E+ V + ++ PP+ P L ++ +C + + +RPTF + A
Sbjct: 219 REVLDQVERGYRMPCPPE--------CPESLHDLMCQCWRKEPEERPTFEYLQA 264
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A++ + +H+ G + ++KP N+LLD SG ++D+G + K + CD+
Sbjct: 178 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR----CDT 233
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + +P+Y +PE V KS D G E D WS G L EM G
Sbjct: 234 A---------VGTPDYISPE----VLKSQG--GDGYYG--RECDWWSVGVFLYEMLVGDT 276
Query: 366 PWAGLSAEEIYRAVVKNR 383
P+ S Y ++ ++
Sbjct: 277 PFYADSLVGTYSKIMNHK 294
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C +P Y AP
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCG-------------TPEYLAPAI------ 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 164 GRCRHS---VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVM 220
R +HS VAVK + + ++ + L ++ +R + NV + + L ++M
Sbjct: 64 AREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF--NVVEMYKSYLVGEELWVLM 121
Query: 221 DRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
+ G L ++ RL EQI + + + LHA GV+ +IK ++LL GR
Sbjct: 122 EFLQGGA-LTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRV 180
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
+SD+G A + K ++ + +P + APE + +SL
Sbjct: 181 KLSDFGFCAQISKDVPKRKX--------------LVGTPYWMAPEV---ISRSL------ 217
Query: 341 AIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPP 387
+ E D WS G ++EM G P+ S +A+ + R PP
Sbjct: 218 ---YATEVDIWSLGIMVIEMVDGEPPYFSDSP---VQAMKRLRDSPP 258
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 232 QRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAIL 291
++ +G L L Q+L + IA G+V L + V ++ N L+ A+ + D+G++
Sbjct: 124 RQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSR-- 181
Query: 292 KKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAW 351
+ S+ + TML + PE+ K + ESD W
Sbjct: 182 ----------DVYSTDYYRVGGHTMLPIRWMPPESIMYRK------------FTTESDVW 219
Query: 352 SFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECL 409
SFG L E+ T G PW LS E+ + + R L P+ P+E++ ++ C
Sbjct: 220 SFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVC-------PKEVYDVMLGCW 272
Query: 410 QFKASKR 416
Q + +R
Sbjct: 273 QREPQQR 279
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A++ + +H+ G + ++KP N+LLD SG ++D+G + K + CD+
Sbjct: 173 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR----CDT 228
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + +P+Y +PE V KS D G E D WS G L EM G
Sbjct: 229 A---------VGTPDYISPE----VLKSQG--GDGYYG--RECDWWSVGVFLYEMLVGDT 271
Query: 366 PWAGLSAEEIYRAVVKNRK 384
P+ S Y ++ ++
Sbjct: 272 PFYADSLVGTYSKIMNHKN 290
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 195 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 254
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 255 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 288
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 289 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 341
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 342 PSQRPTFSELVEHLGNLLQ 360
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 59/324 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 16 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 69
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 70 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 129
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPEC 303
++ A+IA G+ L+A V ++ N ++ + D+G+ + E
Sbjct: 130 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIX---------ET 180
Query: 304 DSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT- 362
D R +L + APE+ + D + + SD WSFG L E+ +
Sbjct: 181 DXXRKGGK---GLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITSL 225
Query: 363 GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSA 421
P+ GLS E++ + V+ L P P + ++ C QF RPTF
Sbjct: 226 AEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPKMRPTFLE 278
Query: 422 MLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 279 IVNLLKDDLH------PSFPEVSF 296
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 698 KDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVH 757
KD+ +G ++ R L G +P LH A+ +E+++ +L G D+N + H
Sbjct: 24 KDYVAKGEDVNRTL-EGGRKP----------LHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 758 NTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAA 802
+ PL A+ G SCV LLLS GAD + +G AF + A
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 546 DPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGAD 605
D ++AL G + V + +G +V L G P H A GQ + + LLL GAD
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP--LHYAADCGQLEILEFLLLKGAD 65
Query: 606 PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSM 641
NA D + L AV + + C ++L G +++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 536 ENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDC 595
E+V+ + G PL +A G E + L+ +GA++ + + P ++ V Y G C
Sbjct: 31 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV--YEGHVSC 88
Query: 596 MRELLLAGADPNAVDDEG 613
++ LL GAD +G
Sbjct: 89 VKLLLSKGADKTVKGPDG 106
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G+ LH A G E++E +L +++ DK PL+ A+ G CV L+ +GA+
Sbjct: 40 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 59/324 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 19 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 72
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 73 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPEC 303
++ A+IA G+ L+A V ++ N ++ + D+G+ + E
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIX---------ET 183
Query: 304 DSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT- 362
D R +L + APE+ + D + + SD WSFG L E+ +
Sbjct: 184 DXXRKGGK---GLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITSL 228
Query: 363 GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSA 421
P+ GLS E++ + V+ L P P + ++ C QF RPTF
Sbjct: 229 AEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPKMRPTFLE 281
Query: 422 MLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 282 IVNLLKDDLH------PSFPEVSF 299
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDX 204
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 205 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 238
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 291
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 292 PSQRPTFSELVEHLGNLLQ 310
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 59/324 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 19 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 72
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 73 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPEC 303
++ A+IA G+ L+A V ++ N ++ + D+G+ + + A + +
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKG 192
Query: 304 DSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT- 362
+L + APE+ + D + + SD WSFG L E+ +
Sbjct: 193 ------------LLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITSL 228
Query: 363 GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSA 421
P+ GLS E++ + V+ L P P + ++ C QF RPTF
Sbjct: 229 AEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPKMRPTFLE 281
Query: 422 MLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 282 IVNLLKDDLH------PSFPEVSF 299
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 92/242 (38%), Gaps = 41/242 (16%)
Query: 130 IEVGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEP-DWLSG 188
I + D +L LGEG +G VA+KK+ EP D
Sbjct: 5 IVYNISSDFQLKSLLGEG------AYGVVCSATHKPTGEIVAIKKI------EPFDKPLF 52
Query: 189 QLDNLRRASMW----CRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL 244
L LR + N+ T + R DS + Y +Q MQ + R+ Q+L
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSFENF--NEVY-IIQELMQTDLHRVISTQML 109
Query: 245 R------YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
+ R V LH + V+ ++KPSNLL++++ V D+GLA I+ + A
Sbjct: 110 SDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADN 169
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
+ P S + + Y APE K S D WS GC L
Sbjct: 170 SEPTGQQSGMVEFVATRW----YRAPEVMLTSAK-----------YSRAMDVWSCGCILA 214
Query: 359 EM 360
E+
Sbjct: 215 EL 216
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 197 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 256
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 257 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 290
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 291 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 343
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 344 PSQRPTFSELVEHLGNLLQ 362
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA-AGVVCMNIKPSNLLL 274
L VM+ G E + ++ YGA+I + LH+ VV ++K NL+L
Sbjct: 226 LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 285
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+GL C++ + + M +P Y APE E
Sbjct: 286 DKDGHIKITDFGL--------CKEGIKDG------ATMKTFCGTPEYLAPEVLE------ 325
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQY 389
D+ G + D W G + EM G +P+ E+++ ++ R L P+
Sbjct: 326 ----DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEA 379
Query: 390 ASIVGVGIPRELWKMIG-------ECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
S++ + ++ + +G E +Q + F+ ++ +H+ E SPP P
Sbjct: 380 KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF-----FAGIV---WQHVYEKKLSPPFKP 430
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D + + LG+G+ V + + R + KV+ ++E + QL
Sbjct: 13 DFDIGRPLGKGKFGNVYL-------ARERQSKFILALKVLFKTQLEKAGVEHQLRREVEI 65
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ R ++ Y ++A
Sbjct: 66 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SRFDEQRTATYITELANA 124
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 125 LSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRR------------TTL 170
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 171 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGMPPFEAHTYQ 216
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E YR + + P + + +I L+ AS+R T + +L
Sbjct: 217 ETYRRISRVEFTFPDF-------VTEGARDLISRLLKHNASQRLTLAEVL 259
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 205 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 238
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 291
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 292 PSQRPTFSELVEHLGNLLQ 310
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 37/240 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
++K+GEG +G + Q + A+KK+ + +E E P ++ L+ +
Sbjct: 7 LEKIGEG------TYGV-VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK--EL 57
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELH 258
N+ + V+ L LV + ++ + EG L + + G+ H
Sbjct: 58 KHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH 117
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
V+ ++KP NLL++ G ++D+GLA P RK E +++
Sbjct: 118 DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-VRKYTHE-------------IVT 163
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS-AEEIYR 377
Y AP+ KK S D WS GC EM G+ + G+S A+++ R
Sbjct: 164 LWYRAPDVLMGSKK-----------YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMR 212
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA-AGVVCMNIKPSNLLL 274
L VM+ G E + ++ YGA+I + LH+ VV ++K NL+L
Sbjct: 223 LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 282
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+GL C++ + + M +P Y APE E
Sbjct: 283 DKDGHIKITDFGL--------CKEGIKDG------ATMKTFCGTPEYLAPEVLE------ 322
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQY 389
D+ G + D W G + EM G +P+ E+++ ++ R L P+
Sbjct: 323 ----DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEA 376
Query: 390 ASIVGVGIPRELWKMIG-------ECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
S++ + ++ + +G E +Q + F+ ++ +H+ E SPP P
Sbjct: 377 KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF-----FAGIV---WQHVYEKKLSPPFKP 427
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 190 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 249
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 250 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 283
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 284 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 336
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 337 PSQRPTFSELVEHLGNLLQ 355
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 141 LTLEHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 200
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 201 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 234
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 235 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 287
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 288 PSQRPTFSELVEHLGNLLQ 306
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 204
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 205 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 238
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 291
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 292 PSQRPTFSELVEHLGNLLQ 310
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 205 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 238
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 291
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 292 PSQRPTFSELVEHLGNLLQ 310
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 188 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 247
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 248 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 281
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 282 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 334
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 335 PSQRPTFSELVEHLGNLLQ 353
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 131/325 (40%), Gaps = 61/325 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 19 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 72
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 73 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ A+IA G+ L+A V ++ N ++ + D+G+ I + RK
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG--- 189
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + APE+ + D + + SD WSFG L E+ +
Sbjct: 190 ----------GKGLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITS 227
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ + V+ L P P + ++ C QF RPTF
Sbjct: 228 LAEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPKMRPTFL 280
Query: 421 AMLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 281 EIVNLLKDDLH------PSFPEVSF 299
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 195
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 196 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 229
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 282
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 283 PSQRPTFSELVEHLGNLLQ 301
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 195
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 196 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 229
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 282
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 283 PSQRPTFSELVEHLGNLLQ 301
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 195
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 196 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 229
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 282
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 283 PSQRPTFSELVEHLGNLLQ 301
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 147 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 206
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 207 VRKGD--------------ARLPLKWMAPET----------IFDRVYTI--QSDVWSFGV 240
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 241 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 293
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 294 PSQRPTFSELVEHLGNLLQ 312
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 182 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 241
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 242 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 275
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 276 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 328
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 329 PSQRPTFSELVEHLGNLLQ 347
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/312 (19%), Positives = 125/312 (40%), Gaps = 50/312 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRN---------------EGRLT 239
M + N+ G D L ++++ G+++ ++ E ++T
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMT 155
Query: 240 LEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA 299
+ ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 156 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA----------- 204
Query: 300 RPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVE 359
R + +D + N P W + + + + +SD WSFG + E
Sbjct: 205 -------RDINNIDXXKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLMWE 251
Query: 360 MCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+RPT
Sbjct: 252 IFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQRPT 305
Query: 419 FSAMLATFLRHL 430
F ++ R L
Sbjct: 306 FKQLVEDLDRIL 317
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
LTLE ++ Y +A+G+ L + + ++ N+LL + D+GLA I K P
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 195
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK L + APE +D I +SD WSFG
Sbjct: 196 VRKGDAR--------------LPLKWMAPET----------IFDRVYTI--QSDVWSFGV 229
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVK--NRKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G+ P+ G+ +E + +K R P Y + E+++ + +C +
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------PEMYQTMLDCWHGE 282
Query: 413 ASKRPTFSAMLATFLRHLQ 431
S+RPTFS ++ LQ
Sbjct: 283 PSQRPTFSELVEHLGNLLQ 301
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 37/240 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
++K+GEG +G + Q + A+KK+ + +E E P ++ L+ +
Sbjct: 7 LEKIGEG------TYGV-VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK--EL 57
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELH 258
N+ + V+ L LV + ++ + EG L + + G+ H
Sbjct: 58 KHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH 117
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
V+ ++KP NLL++ G ++D+GLA P RK E +++
Sbjct: 118 DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-VRKYTHE-------------VVT 163
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS-AEEIYR 377
Y AP+ KK S D WS GC EM G+ + G+S A+++ R
Sbjct: 164 LWYRAPDVLMGSKK-----------YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMR 212
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L L+++ G EG + Y A+I+ + LH G++ ++KP N++L+
Sbjct: 96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLN 155
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
G ++D+GL C+++ D + H C + Y APE + +S
Sbjct: 156 HQGHVKLTDFGL--------CKESI--HDGTVTHXF--CGTIE--YMAPEI---LMRS-- 196
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPP 387
G + D WS G + +M TG+ P+ G + ++ ++K + LPP
Sbjct: 197 -------GHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPP 242
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 161
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 162 -DTXTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 205
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 206 YGMSPYPGIDPSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 258
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 259 EIHQAFETMFQESSISDEVEKELG 282
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
+N+ + V D C LVM+ G + G L+++ + + I G+ H
Sbjct: 71 QNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM 130
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
+V +IKP N+L+D++ + D+G+A L + + + H SP
Sbjct: 131 RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTN--------HVLGTVQYFSPE 182
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
EA + +D +S G L EM G P+ G +A I A+
Sbjct: 183 QAKGEATDEC-----------------TDIYSIGIVLYEMLVGEPPFNGETAVSI--AIK 223
Query: 381 KNRKLPPQYASIVGVGIPRELWKMI 405
+ P + V IP+ L +I
Sbjct: 224 HIQDSVPNVTTDVRKDIPQSLSNVI 248
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
LTLE + + + RG+ +H+A V+ ++KPSNLL++ + + D+G+
Sbjct: 155 LTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM---------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPN-YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC- 355
AR C S H ++ Y APE + + + AI D WS GC
Sbjct: 205 -ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE-----YTQAI------DLWSVGCI 252
Query: 356 --------------------TLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYA---SI 392
L+ M G+ A + A R + LPP+
Sbjct: 253 FGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWET 312
Query: 393 VGVGIPRELWKMIGECLQFKASKRPTFSAML-ATFLRHLQELPRSPPASP--DTGFTKFS 449
V G R+ ++G L+F+ S R + +A L FL + P +P D F + +
Sbjct: 313 VYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEPDCAPPFDFAFDREA 372
Query: 450 TSNE 453
+ E
Sbjct: 373 LTRE 376
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
+ +A+G+ L + + ++ N+LL + D+GLA +K DS
Sbjct: 166 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN----------DS 215
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GS 364
+ + + N P W + N + + ESD WS+G L E+ + GS
Sbjct: 216 NYV--------VKGNARLPVKWMAPESIFNCVY------TFESDVWSYGIFLWELFSLGS 261
Query: 365 IPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
P+ G+ + + ++K R L P++A P E++ ++ C KRPTF +
Sbjct: 262 SPYPGMPVDSKFYKMIKEGFRMLSPEHA-------PAEMYDIMKTCWDADPLKRPTFKQI 314
Query: 423 LATFLRHLQE 432
+ + + E
Sbjct: 315 VQLIEKQISE 324
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 55/289 (19%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQG-RCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++KL++ +G+G V + G + G +C + A + +AE + + LR
Sbjct: 7 ELKLLQTIGKGEFGDV-MLGDYRGNKVAVKCIKNDATAQAFLAE-------ASVMTQLRH 58
Query: 196 ASMWCRNVCTFHGVLRMDSC-LGLVMDRCYGSVQLAMQRNEGRLTL--EQILRYGADIAR 252
+ N+ GV+ + L +V + + R+ GR L + +L++ D+
Sbjct: 59 S-----NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCE 113
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
+ L V ++ N+L+ A VSD+GL + S
Sbjct: 114 AMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL-----------------TKEASSTQ 156
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
D L +TAPEA K S +SD WSFG L E+ + G +P+ +
Sbjct: 157 DTGKLPVKWTAPEALREKK------------FSTKSDVWSFGILLWEIYSFGRVPYPRIP 204
Query: 372 AEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+++ V K K+ P G P +++++ C A+ RP+F
Sbjct: 205 LKDVVPRVEKGYKMDAPD-------GCPPAVYEVMKNCWHLDAAMRPSF 246
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 36/223 (16%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 69 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 127
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I + + + +
Sbjct: 128 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDEMANEFVGTRS 171
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y +PE + S+ +SD WS G +LVEM G P ++ E+ +V
Sbjct: 172 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPRPPMAIFELLDYIV 219
Query: 381 KNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
PP+ S V E + +CL ++R ++
Sbjct: 220 NEP--PPKLPSAV---FSLEFQDFVNKCLIKNPAERADLKQLM 257
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 40/191 (20%)
Query: 233 RNEGRLTL--EQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAI 290
R+ GR L + +L++ D+ + L V ++ N+L+ A VSD+GL
Sbjct: 107 RSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL--- 163
Query: 291 LKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDA 350
+ S D L +TAPEA K S +SD
Sbjct: 164 --------------TKEASSTQDTGKLPVKWTAPEALREKK------------FSTKSDV 197
Query: 351 WSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGEC 408
WSFG L E+ + G +P+ + +++ V K K+ P G P +++++ C
Sbjct: 198 WSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD-------GCPPAVYEVMKNC 250
Query: 409 LQFKASKRPTF 419
A+ RP+F
Sbjct: 251 WHLDAAMRPSF 261
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/312 (19%), Positives = 124/312 (39%), Gaps = 50/312 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMD-------------RCYGSVQLAMQRN---EGRLT 239
M + N+ G D L ++++ R ++ + N E ++T
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 155
Query: 240 LEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA 299
+ ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 156 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA----------- 204
Query: 300 RPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVE 359
R + +D + N P W + + + + +SD WSFG + E
Sbjct: 205 -------RDINNIDXXKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLMWE 251
Query: 360 MCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+RPT
Sbjct: 252 IFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQRPT 305
Query: 419 FSAMLATFLRHL 430
F ++ R L
Sbjct: 306 FKQLVEDLDRIL 317
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLA--------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 205 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 249
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 250 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 303
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 304 PTFKQLVEDLDRIL 317
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 165
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 166 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 209
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 210 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 262
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 263 EIHQAFETMFQESSISDEVEKELG 286
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 165
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 166 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 209
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 210 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 262
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 263 EIHQAFETMFQESSISDEVEKELG 286
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 37/240 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
++K+GEG +G + Q + A+KK+ + +E E P ++ L+ +
Sbjct: 7 LEKIGEG------TYGV-VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK--EL 57
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELH 258
N+ + V+ L LV + ++ + EG L + + G+ H
Sbjct: 58 KHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH 117
Query: 259 AAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
V+ ++KP NLL++ G ++D+GLA P RK E +++
Sbjct: 118 DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-VRKYTHE-------------VVT 163
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS-AEEIYR 377
Y AP+ KK S D WS GC EM G+ + G+S A+++ R
Sbjct: 164 LWYRAPDVLMGSKK-----------YSTTIDIWSVGCIFAEMVNGAPLFPGVSEADQLMR 212
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 161
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 162 -DTXTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 205
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 206 YGMSPYPGIDPSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 258
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 259 EIHQAFETMFQE 270
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
+ +A+G+ L + + ++ N+LL + D+GLA +K DS
Sbjct: 168 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN----------DS 217
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GS 364
+ + + N P W + N + + ESD WS+G L E+ + GS
Sbjct: 218 NYV--------VKGNARLPVKWMAPESIFNCVY------TFESDVWSYGIFLWELFSLGS 263
Query: 365 IPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
P+ G+ + + ++K R L P++A P E++ ++ C KRPTF +
Sbjct: 264 SPYPGMPVDSKFYKMIKEGFRMLSPEHA-------PAEMYDIMKTCWDADPLKRPTFKQI 316
Query: 423 LATFLRHLQE 432
+ + + E
Sbjct: 317 VQLIEKQISE 326
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 261 EIHQAFETMFQESSISDEVEKELG 284
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 114 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 164
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 165 -DTXTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 208
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 209 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 261
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 262 EIHQAFETMFQESSISDEVEKELG 285
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 213 DSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNL 272
+S L +VM+ G + R GR + Y A I LH+ ++ ++KP NL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 172
Query: 273 LLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKK 332
L+D G V+D+G A +K + C + PEA P +
Sbjct: 173 LIDQQGYIQVTDFGFAKRVKG----RTWXLCGT------------------PEALAP-EI 209
Query: 333 SLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNR-KLPPQYAS 391
L+ ++ A+ D W+ G + EM G P+ +IY +V + + P ++S
Sbjct: 210 ILSKGYNKAV------DWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263
Query: 392 IVGVGIPRELWKMIGECLQFKASKR 416
+L ++ LQ +KR
Sbjct: 264 --------DLKDLLRNLLQVDLTKR 280
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
+ +A+G+ L + + ++ N+LL + D+GLA +K DS
Sbjct: 173 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN----------DS 222
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GS 364
+ + + N P W + N + + ESD WS+G L E+ + GS
Sbjct: 223 NYV--------VKGNARLPVKWMAPESIFNCVY------TFESDVWSYGIFLWELFSLGS 268
Query: 365 IPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
P+ G+ + + ++K R L P++A P E++ ++ C KRPTF +
Sbjct: 269 SPYPGMPVDSKFYKMIKEGFRMLSPEHA-------PAEMYDIMKTCWDADPLKRPTFKQI 321
Query: 423 LATFLRHLQE 432
+ + + E
Sbjct: 322 VQLIEKQISE 331
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 261 EIHQAFETMFQESSISDEVEKELG 284
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 261 EIHQAFETMFQESSISDEVEKELG 284
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
+ +A+G+ L + + ++ N+LL + D+GLA +K DS
Sbjct: 173 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARHIKN----------DS 222
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GS 364
+ + + N P W + N + + ESD WS+G L E+ + GS
Sbjct: 223 NYV--------VKGNARLPVKWMAPESIFNCVY------TFESDVWSYGIFLWELFSLGS 268
Query: 365 IPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
P+ G+ + + ++K R L P++A P E++ ++ C KRPTF +
Sbjct: 269 SPYPGMPVDSKFYKMIKEGFRMLSPEHA-------PAEMYDIMKTCWDADPLKRPTFKQI 321
Query: 423 LATFLRHLQE 432
+ + + E
Sbjct: 322 VQLIEKQISE 331
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
+ +A+G+ L + + ++ N+LL + D+GLA +K DS
Sbjct: 150 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN----------DS 199
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GS 364
+ + + N P W + N + + ESD WS+G L E+ + GS
Sbjct: 200 NYV--------VKGNARLPVKWMAPESIFNCVY------TFESDVWSYGIFLWELFSLGS 245
Query: 365 IPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
P+ G+ + + ++K R L P++A P E++ ++ C KRPTF +
Sbjct: 246 SPYPGMPVDSKFYKMIKEGFRMLSPEHA-------PAEMYDIMKTCWDADPLKRPTFKQI 298
Query: 423 LATFLRHLQE 432
+ + + E
Sbjct: 299 VQLIEKQISE 308
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 134 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 185
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R +S + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 186 ARANSFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 229
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 230 PFRAGNEYLIFQKIIK 245
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 138 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 189
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R +S + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 190 ARANSFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 233
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 234 PFRAGNEYLIFQKIIK 249
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 116/295 (39%), Gaps = 47/295 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 10 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 60
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 61 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 118
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ + E SSR
Sbjct: 119 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV-------LDDEYTSSR------- 164
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 165 -----GSKFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 213
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFL 427
E + + +L P AS +++ ++ C KA +RPTF +L+ L
Sbjct: 214 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNIL 261
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+L+ + I + I RG+ +H+A V+ ++KPSNLL++ + + D+GLA I
Sbjct: 140 QLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARI------ 193
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
A PE D + + T Y APE LN + G + D WS GC
Sbjct: 194 --ADPEHDHTGFLTEXVATRW---YRAPEIM------LN-----SKGYTKSIDIWSVGCI 237
Query: 357 LVEMCTGSIPWAG 369
L EM + + G
Sbjct: 238 LAEMLSNRPIFPG 250
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 261 EIHQAFETMFQESSISDEVEKELG 284
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 124/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L +++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIV--AYASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 205 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 249
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 250 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 303
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 304 PTFKQLVEDLDRIL 317
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +H VV ++KP+N+LLD G +SD GLA CD
Sbjct: 297 YAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA--------------CDF 342
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
S+ ++ + Y APE + + +D +S GC L ++ G
Sbjct: 343 SKKKP--HASVGTHGYMAPEVLQ-----------KGVAYDSSADWFSLGCMLFKLLRGHS 389
Query: 366 PWAGLSAE---EIYR-----AVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS--K 415
P+ + EI R AV P+ S++ + R++ + +G CL A K
Sbjct: 390 PFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLG-CLGRGAQEVK 448
Query: 416 RPTFSAMLATFLRHLQELPRSPPASPDTG 444
F L + LQ+ P PP P G
Sbjct: 449 ESPFFRSLDWQMVFLQKYP--PPLIPPRG 475
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E VR LL GA+P + +AL +AS ++V ++L+ VD+NI + + PL A
Sbjct: 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
+ CV LL+ GAD + D G +A
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 512 QTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV 571
++AL LA G ++V +LE ++++ D +G PL++A+ +CV AL+ RGA++
Sbjct: 70 ESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 572 ISRLREGFGP 581
+ G+ P
Sbjct: 129 TTEADSGYTP 138
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 545 GDPPLVFALAA-GSPECVHALIKRGANVISRLRE-GFGPSVAHVCAYHGQPDCMRELLLA 602
GD + LAA G + + +++G N++++ E GF P + + G+ + +R LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW--ASAFGEIETVRFLLEW 58
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVILE 634
GADP+ + E ES L A YTD ++LE
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLE 90
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 514 ALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN--V 571
++H +G + ++ L V+ D+ G PL++A A G E V L++ GA+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 572 ISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIV 631
+++ RE S + + G D + LL D N D G + L AV + C
Sbjct: 65 LAKERE----SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 632 ILENGGCRSMAILNSKELTPLHLCVA 657
+L G + TP+ L VA
Sbjct: 121 LLARGA--DLTTEADSGYTPMDLAVA 144
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 12/162 (7%)
Query: 471 NLHQLVSEGDVSGVRDLLXXXXXXXXXXXXXXXXXXQNADGQTALHLACRRGSAELVEAI 530
++HQL ++G++ +++ L + G T L A G E V +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNK---------PDERGFTPLIWASAFGEIETVRFL 55
Query: 531 LEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYH 590
LE+ + +L K+ + L A G + V L++R ++ G P + V H
Sbjct: 56 LEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114
Query: 591 GQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
+ C+ LL GAD D G + + AVA Y VI
Sbjct: 115 VK--CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D + T L AS ++E V+ +L+ G D +I L +A G VGLLL
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 782 ADCNWQD 788
D N D
Sbjct: 93 VDINIYD 99
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +H VV ++KP+N+LLD G +SD GLA CD
Sbjct: 297 YAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA--------------CDF 342
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
S+ ++ + Y APE + + +D +S GC L ++ G
Sbjct: 343 SKKKP--HASVGTHGYMAPEVLQ-----------KGVAYDSSADWFSLGCMLFKLLRGHS 389
Query: 366 PWAGLSAE---EIYR-----AVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS--K 415
P+ + EI R AV P+ S++ + R++ + +G CL A K
Sbjct: 390 PFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLG-CLGRGAQEVK 448
Query: 416 RPTFSAMLATFLRHLQELPRSPPASPDTG 444
F L + LQ+ P PP P G
Sbjct: 449 ESPFFRSLDWQMVFLQKYP--PPLIPPRG 475
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 126 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 176
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 177 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 220
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 221 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 273
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 274 EIHQAFETMFQESSISDEVEKELG 297
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +H VV ++KP+N+LLD G +SD GLA CD
Sbjct: 296 YAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA--------------CDF 341
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
S+ ++ + Y APE + + +D +S GC L ++ G
Sbjct: 342 SKKKP--HASVGTHGYMAPEVLQ-----------KGVAYDSSADWFSLGCMLFKLLRGHS 388
Query: 366 PWAGLSAE---EIYR-----AVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS--K 415
P+ + EI R AV P+ S++ + R++ + +G CL A K
Sbjct: 389 PFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLG-CLGRGAQEVK 447
Query: 416 RPTFSAMLATFLRHLQELPRSPPASPDTG 444
F L + LQ+ P PP P G
Sbjct: 448 ESPFFRSLDWQMVFLQKYP--PPLIPPRG 474
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 168
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 169 -DTXTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 212
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 213 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 265
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 266 EIHQAFETMFQE 277
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I G+ +H VV ++KP+N+LLD G +SD GLA CD
Sbjct: 297 YAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA--------------CDF 342
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
S+ ++ + Y APE + + +D +S GC L ++ G
Sbjct: 343 SKKKP--HASVGTHGYMAPEVLQ-----------KGVAYDSSADWFSLGCMLFKLLRGHS 389
Query: 366 PWAGLSAE---EIYR-----AVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS--K 415
P+ + EI R AV P+ S++ + R++ + +G CL A K
Sbjct: 390 PFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLG-CLGRGAQEVK 448
Query: 416 RPTFSAMLATFLRHLQELPRSPPASPDTG 444
F L + LQ+ P PP P G
Sbjct: 449 ESPFFRSLDWQMVFLQKYP--PPLIPPRG 475
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 131/325 (40%), Gaps = 61/325 (18%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L+++LG+G G+ G +G VAVK V E L +++ L AS
Sbjct: 18 ITLLRELGQGS-FGMVYEGNARDIIKGEAETRVAVKTVN-----ESASLRERIEFLNEAS 71
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNEGRL--TLEQI 243
+ C +V GV+ +VM+ + Y S++ + N GR TL+++
Sbjct: 72 VMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 131
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ A+IA G+ L+A V ++ N ++ + D+G+ I + RK
Sbjct: 132 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG--- 188
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + APE+ + D + + SD WSFG L E+ +
Sbjct: 189 ----------GKGLLPVRWMAPESLK-----------DGV-FTTSSDMWSFGVVLWEITS 226
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ + V+ L P P + ++ C QF RPTF
Sbjct: 227 LAEQPYQGLSNEQVLKFVMDGGYLDQPD-------NCPERVTDLMRMCWQFNPKMRPTFL 279
Query: 421 AMLATFLRHLQELPRSPPASPDTGF 445
++ L P+ P+ F
Sbjct: 280 EIVNLLKDDLH------PSFPEVSF 298
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
LTLE + + + RG+ +H+A V+ ++KPSNLL++ + + D+G+
Sbjct: 156 LTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM---------- 205
Query: 298 KARPECDSSRIHSCMDCTMLSPN-YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC- 355
AR C S H ++ Y APE + + + AI D WS GC
Sbjct: 206 -ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE-----YTQAI------DLWSVGCI 253
Query: 356 --------------------TLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYA---SI 392
L+ M G+ A + A R + LPP+
Sbjct: 254 FGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWET 313
Query: 393 VGVGIPRELWKMIGECLQFKASKRPTFSAML-ATFLRHLQELPRSPPASP--DTGFTKFS 449
V G R+ ++G L+F+ S R + +A L FL + P +P D F + +
Sbjct: 314 VYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEPDCAPPFDFAFDREA 373
Query: 450 TSNE 453
+ E
Sbjct: 374 LTRE 377
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 25 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 75
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 76 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 133
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + +S + S
Sbjct: 134 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEYTSSVGS---- 181
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 182 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 228
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 229 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 168
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 169 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 212
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 213 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 265
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 266 EIHQAFETMFQESSISDEVEKELG 289
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E VR LL GA+P + +AL +AS ++V ++L+ VD+NI + + PL A
Sbjct: 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 766 LARGAKSCVGLLLSAGADCNWQDDEGDNAFHIA 798
+ CV LL+ GAD + D G +A
Sbjct: 110 VHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 512 QTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV 571
++AL LA G ++V +LE ++++ D +G PL++A+ +CV AL+ RGA++
Sbjct: 70 ESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 572 ISRLREGFGP 581
+ G+ P
Sbjct: 129 TTEADSGYTP 138
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 545 GDPPLVFALAA-GSPECVHALIKRGANVISRLRE-GFGPSVAHVCAYHGQPDCMRELLLA 602
GD + LAA G + + +++G N++++ E GF P + + G+ + +R LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW--ASAFGEIETVRFLLEW 58
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVILE 634
GADP+ + E ES L A YTD ++LE
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLE 90
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 514 ALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN--V 571
++H +G + ++ L V+ D+ G PL++A A G E V L++ GA+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 572 ISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIV 631
+++ RE S + + G D + LL D N D G + L AV + C
Sbjct: 65 LAKERE----SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 632 ILENGGCRSMAILNSKELTPLHLCVA 657
+L G + TP+ L VA
Sbjct: 121 LLARGA--DLTTEADSGYTPMDLAVA 144
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 12/162 (7%)
Query: 471 NLHQLVSEGDVSGVRDLLXXXXXXXXXXXXXXXXXXQNADGQTALHLACRRGSAELVEAI 530
++HQL ++G++ +++ L + G T L A G E V +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNK---------PDERGFTPLIWASAFGEIETVRFL 55
Query: 531 LEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYH 590
LE+ + +L K+ + L A G + V L++R ++ G P + V H
Sbjct: 56 LEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNH 114
Query: 591 GQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
+ C+ LL GAD D G + + AVA Y VI
Sbjct: 115 VK--CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 161
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 162 -DTFTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 205
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 206 YGMSPYPGIDPSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 258
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 259 EIHQAFETMFQESSISDEVEKELG 282
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 16 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 66
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 67 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 124
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + +S + S
Sbjct: 125 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEYTSSVGS---- 172
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 173 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 219
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 220 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 272
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 168
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 169 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 212
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 213 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 265
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 266 EIHQAFETMFQESSISDEVEKELG 289
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA-AGVVCMNIKPSNLLL 274
L VM+ G E + ++ YGA+I + LH+ VV ++K NL+L
Sbjct: 83 LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 142
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+GL C++ + + M +P Y APE E
Sbjct: 143 DKDGHIKITDFGL--------CKEGIKDG------ATMKXFCGTPEYLAPEVLE------ 182
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQY 389
D+ G + D W G + EM G +P+ E+++ ++ R L P+
Sbjct: 183 ----DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEA 236
Query: 390 ASIVGVGIPRELWKMIG-------ECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
S++ + ++ + +G E +Q + F+ ++ +H+ E SPP P
Sbjct: 237 KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF-----FAGIV---WQHVYEKKLSPPFKP 287
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 96 MIGKHKNIIHLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 153
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 204
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 205 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 249
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 250 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 303
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 304 PTFKQLVEDLDRIL 317
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA-AGVVCMNIKPSNLLL 274
L VM+ G E + ++ YGA+I + LH+ VV ++K NL+L
Sbjct: 85 LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 144
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+GL C++ + + M +P Y APE E
Sbjct: 145 DKDGHIKITDFGL--------CKEGIKDG------ATMKXFCGTPEYLAPEVLE------ 184
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQY 389
D+ G + D W G + EM G +P+ E+++ ++ R L P+
Sbjct: 185 ----DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEA 238
Query: 390 ASIVGVGIPRELWKMIG-------ECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
S++ + ++ + +G E +Q + F+ ++ +H+ E SPP P
Sbjct: 239 KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF-----FAGIV---WQHVYEKKLSPPFKP 289
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 261 EIHQAFETMFQE 272
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 10 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 60
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 61 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 118
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + +S + S
Sbjct: 119 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEYTSSVGS---- 166
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 167 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 213
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 214 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 266
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W R ++ VA+K MI E M D + +
Sbjct: 9 DLTFLKELGTGQ-FGVVKYGKW------RGQYDVAIK--MIKEGSMSEDEFIEEAKVMMN 59
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 60 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 117
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + +S + S
Sbjct: 118 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEYTSSVGS---- 165
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 166 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 212
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 213 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 265
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 117 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 167
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 168 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 211
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 212 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 264
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 265 EIHQAFETMFQE 276
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 168
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 169 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 212
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 213 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 265
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 266 EIHQAFETMFQE 277
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 168
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 169 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 212
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 213 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 265
Query: 421 AMLATFLRHLQE 432
+ F QE
Sbjct: 266 EIHQAFETMFQE 277
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA-AGVVCMNIKPSNLLL 274
L VM+ G E + ++ YGA+I + LH+ VV ++K NL+L
Sbjct: 84 LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLML 143
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
D G ++D+GL C++ + + M +P Y APE E
Sbjct: 144 DKDGHIKITDFGL--------CKEGIKDG------ATMKXFCGTPEYLAPEVLE------ 183
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN-----RKLPPQY 389
D+ G + D W G + EM G +P+ E+++ ++ R L P+
Sbjct: 184 ----DNDYGRA--VDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEA 237
Query: 390 ASIVGVGIPRELWKMIG-------ECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
S++ + ++ + +G E +Q + F+ ++ +H+ E SPP P
Sbjct: 238 KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF-----FAGIV---WQHVYEKKLSPPFKP 288
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 29 LTLGKPLGEGCFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 87
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 88 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 145
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 146 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 196
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 197 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 241
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 242 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 295
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 296 PTFKQLVEDLDRIL 309
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 55/289 (19%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQG-RCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR 195
++KL++ +G+G V + G + G +C + A + +AE + + LR
Sbjct: 13 ELKLLQTIGKGEFGDV-MLGDYRGNKVAVKCIKNDATAQAFLAE-------ASVMTQLRH 64
Query: 196 ASMWCRNVCTFHGVLRMDSC-LGLVMDRCYGSVQLAMQRNEGRLTL--EQILRYGADIAR 252
+ N+ GV+ + L +V + + R+ GR L + +L++ D+
Sbjct: 65 S-----NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCE 119
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
+ L V ++ N+L+ A VSD+GL + S
Sbjct: 120 AMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL-----------------TKEASSTQ 162
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLS 371
D L +TAPEA S +SD WSFG L E+ + G +P+ +
Sbjct: 163 DTGKLPVKWTAPEALREA------------AFSTKSDVWSFGILLWEIYSFGRVPYPRIP 210
Query: 372 AEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+++ V K K+ P G P +++++ C A+ RP+F
Sbjct: 211 LKDVVPRVEKGYKMDAPD-------GCPPAVYEVMKNCWHLDAAMRPSF 252
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 47/300 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAE-EMEPDWLSGQLDNLRR 195
D+ +K+LG G+ GV +G W G ++ VA+K MI E M D + +
Sbjct: 5 DLTFLKELGTGQ-FGVVKYGKWRG------QYDVAIK--MIKEGSMSEDEFIEEAKVMMN 55
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRN-EGRLTLEQILRYGADIARGV 254
S + +GV + ++ + L R R +Q+L D+ +
Sbjct: 56 LSH--EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAM 113
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + + ++ N L++ G VSD+GL+ R + +S + S
Sbjct: 114 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS--------RYVLDDEYTSSVGS---- 161
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
P W P + + S +SD W+FG + E+ + G +P+ +
Sbjct: 162 -------KFPVRWSPPEVLM------YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS 208
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
E + + +L P AS +++ ++ C KA +RPTF +L+ L + E
Sbjct: 209 ETAEHIAQGLRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 261
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A+ A + V+I++ G DV ++ + + PLH+A G V LLL AGAD QD G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 792 DNAFHIAAD 800
AF I+ D
Sbjct: 91 KTAFDISID 99
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 686 VGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIIL 745
+G L AA +D EV RIL+ GA+ A+D T LH+A+ +E+VK++L
Sbjct: 24 LGKKLLEAARAGQDDEV------RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 746 DAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
+AG DV ++ +++ G + +L
Sbjct: 78 EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 563 ALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVA 622
L+ RG+++ S L + + A GQ D +R L+ GAD A D G + LH A
Sbjct: 12 GLVPRGSHMGSDLGKKLLEA-----ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66
Query: 623 KKYTDCAIVILENGG 637
+ + ++LE G
Sbjct: 67 NGHLEVVKLLLEAGA 81
Score = 30.0 bits (66), Expect = 10.0, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHAL 564
++ +G T LHLA R G E+V+ +LE + +V DK G ++ G+ + L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 83 LTLGKPLGEGCFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 141
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 142 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 199
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 200 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 250
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 251 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 295
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 296 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 349
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 350 PTFKQLVEDLDRIL 363
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 24 LTLGKPLGEGCFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 82
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 83 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 140
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 141 MTFKDLVSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLA--------- 191
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 192 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 236
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 237 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 290
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 291 PTFKQLVEDLDRIL 304
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 37/246 (15%)
Query: 143 KLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRN 202
K+GEG V + G Q VAVKK+ + ++ + L ++ +R N
Sbjct: 52 KIGEGSTGIVCIATEKHTGKQ------VAVKKMDLRKQQRRELLFNEVVIMR--DYHHDN 103
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGV 262
V + + L +VM+ G L R+ EQI + R + LH GV
Sbjct: 104 VVDMYSSYLVGDELWVVMEFLEGGA-LTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGV 162
Query: 263 VCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
+ +IK ++LL + GR +SD+G A + K ++ + +P +
Sbjct: 163 IHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRK--------------XLVGTPYWM 208
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
APE + E D WS G ++EM G P+ + R +
Sbjct: 209 APEVI------------SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI--R 254
Query: 383 RKLPPQ 388
LPP+
Sbjct: 255 DSLPPR 260
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 54/314 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 26 LTLGKPLGEGCFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 84
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMDRCYGS---------------VQLAMQRN---EGR 237
M + N+ G D L ++++ Y S ++ + N E +
Sbjct: 85 MIGKHKNIINLLGACTQDGPLYVIVE--YASKGNLREYLRARRPPGMEYSYDINRVPEEQ 142
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+T + ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 143 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA--------- 193
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
R + +D + N P W + + + + +SD WSFG +
Sbjct: 194 ---------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLM 238
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+R
Sbjct: 239 WEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQR 292
Query: 417 PTFSAMLATFLRHL 430
PTF ++ R L
Sbjct: 293 PTFKQLVEDLDRIL 306
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G TAL A + + E +L NV+ D G PL++++ G E + L++
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 567 RGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEG 613
GANV R EG P + V + +G+ + +++LL GAD +A D G
Sbjct: 123 HGANVNDRNLEGETPLI--VASKYGRSEIVKKLLELGADISARDLTG 167
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGA 770
LL+ G+ +D +T L + + E+ +L+ G +VN RN+ PL VA G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 771 KSCVGLLLSAGADCNWQDDEGDNA 794
V LL GAD + +D G A
Sbjct: 147 SEIVKKLLELGADISARDLTGLTA 170
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 721 QDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSA 780
+D + TAL A N + + + +L G +VN ++ PL ++ G LL
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 781 GADCNWQDDEGDNAFHIAA 799
GA+ N ++ EG+ +A+
Sbjct: 124 GANVNDRNLEGETPLIVAS 142
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNV 756
E+ LL GA ++ + T L +AS E+VK +L+ G D++ R++
Sbjct: 115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/312 (19%), Positives = 123/312 (39%), Gaps = 50/312 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ L K LGEG V V +G + + + +V V M+ ++ LS + +
Sbjct: 37 LTLGKPLGEGAFGQV-VMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95
Query: 198 MWCR--NVCTFHGVLRMDSCLGLVMD-------------RCYGSVQLAMQRN---EGRLT 239
M + N+ G D L +++ R ++ + N E ++T
Sbjct: 96 MIGKHKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 155
Query: 240 LEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKA 299
+ ++ +ARG+ L + + ++ N+L+ + ++D+GLA
Sbjct: 156 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA----------- 204
Query: 300 RPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVE 359
R + +D + N P W + + + + +SD WSFG + E
Sbjct: 205 -------RDINNIDYYKKTTNGRLPVKWMAPEALFDRVY------THQSDVWSFGVLMWE 251
Query: 360 MCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPT 418
+ T G P+ G+ EE+++ + + ++ EL+ M+ +C S+RPT
Sbjct: 252 IFTLGGSPYPGIPVEELFKLLKEGHRMDKP------ANCTNELYMMMRDCWHAVPSQRPT 305
Query: 419 FSAMLATFLRHL 430
F ++ R L
Sbjct: 306 FKQLVEDLDRIL 317
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGA 770
LL GA P QD + +H A+ ++ +K++++ G DVN+ + +P+H+A+ G
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 771 KSCVGLLLSAGADCNWQDDEGDNAFHIA 798
+ V L+A +D + +D G +A
Sbjct: 114 TAVVS-FLAAESDLHRRDARGLTPLELA 140
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 579 FGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGC 638
FG + V + G ELL GA PN D G S +H A + D V++E+G
Sbjct: 35 FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA- 92
Query: 639 RSMAILNSKELTPLHLCVATWNVAVV 664
+ + + P+HL V + AVV
Sbjct: 93 -DVNVPDGTGALPIHLAVQEGHTAVV 117
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGA 770
LL GA P QD + +H A+ ++ +K++++ G DVN+ + +P+H+A+ G
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 771 KSCVGLLLSAGADCNWQDDEGDNAFHIA 798
+ V L+A +D + +D G +A
Sbjct: 120 TAVVS-FLAAESDLHRRDARGLTPLELA 146
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 579 FGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGC 638
FG + V + G ELL GA PN D G S +H A + D V++E+G
Sbjct: 41 FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA- 98
Query: 639 RSMAILNSKELTPLHLCVATWNVAVV 664
+ + + P+HL V + AVV
Sbjct: 99 -DVNVPDGTGALPIHLAVQEGHTAVV 123
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 115/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + R + KV+ ++E + QL
Sbjct: 6 DFEIGRPLGKGKFGNVYL-------AREKQRKFILALKVLFKAQLEKAGVEHQLRREVEI 58
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 59 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 117
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 118 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 163
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 164 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 209
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 210 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 252
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 171 AVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLA 230
A +++++ + M+ + + G LD AS RN F+ V+ +Q
Sbjct: 70 AYRELLLLKHMQHENVIGLLDVFTPASS-LRNFYDFYLVMPF--------------MQTD 114
Query: 231 MQRNEG-RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
+Q+ G + + E+I + +G+ +H+AGVV ++KP NL ++ + D+GLA
Sbjct: 115 LQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA- 173
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
R A E M +++ Y APE L W + + D
Sbjct: 174 -------RHADAE---------MTGYVVTRWYRAPEVI--------LSW---MHYNQTVD 206
Query: 350 AWSFGCTLVEMCTGSIPWAG 369
WS GC + EM TG + G
Sbjct: 207 IWSVGCIMAEMLTGKTLFKG 226
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 44/200 (22%)
Query: 171 AVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVCTFHGVL-RMDSCLGLVMDRCYGSVQL 229
A +++++ + M+ + + G LD AS RN F+ V+ M + L +M
Sbjct: 88 AYRELLLLKHMQHENVIGLLDVFTPASS-LRNFYDFYLVMPFMQTDLQKIM--------- 137
Query: 230 AMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
M+ +E ++ Q L Y + +G+ +H+AGVV ++KP NL ++ + D+GLA
Sbjct: 138 GMEFSEEKI---QYLVY--QMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA- 191
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
R A E M +++ Y APE L W + + D
Sbjct: 192 -------RHADAE---------MTGYVVTRWYRAPEVI--------LSW---MHYNQTVD 224
Query: 350 AWSFGCTLVEMCTGSIPWAG 369
WS GC + EM TG + G
Sbjct: 225 IWSVGCIMAEMLTGKTLFKG 244
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ +Q Y D+ +G+ LH ++ +IKPSNLL+ G ++D+G++ K
Sbjct: 134 LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGS--- 190
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
+ + T+ +P + APE+ +K +F A+ D W+ G TL
Sbjct: 191 -----------DALLSNTVGTPAFMAPESLSETRK---IFSGKAL------DVWAMGVTL 230
Query: 358 VEMCTGSIPW 367
G P+
Sbjct: 231 YCFVFGQCPF 240
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTSDLKICDFGLA--------R 174
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 175 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 220
Query: 358 VEMCT 362
EM +
Sbjct: 221 AEMLS 225
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM----------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+ ++ +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 --TGDTYTAPAGAKFPIKWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 209
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 210 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 262
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 263 EIHQAFETMFQESSISDEVEKELG 286
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 717 EP-TAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNV--------HNTI-----PL 762
EP T++ + +TALHIA + +V LV+ +L G V+ R HN I PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 763 HVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHI 797
A G++ V LL+ GAD QD G+ HI
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 510 DGQTALHLACRRGSAELVEAIL---------------EYSQENVDVLDKDGDPPLVFALA 554
+GQTALH+A + LV A+L Y N L G+ PL FA
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN---LIYYGEHPLSFAAC 130
Query: 555 AGSPECVHALIKRGANVISRLREGFGPSVAHV 586
GS E V LI+ GA++ R ++ G +V H+
Sbjct: 131 VGSEEIVRLLIEHGADI--RAQDSLGNTVLHI 160
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 507 QNADGQTALHLACRRGSAE----LVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVH 562
+ A G+TALH+A + E L+EA E E + +G L A+ + V
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 563 ALIKRGANVISRLREGFGPSVAHVCAYHGQ-----------PDCMRELLLAGADPNAVDD 611
AL+ RGA+V +R H Y+G+ + +R L+ GAD A D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 612 EGESVLHRAVAKKYTDCA-----IVILENGG--CRSMAIL-NSKELTPLHLCVATWNVAV 663
G +VLH + + A +++ +GG +S+ ++ N++ LTP L N+ +
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212
Query: 664 VKRWVE 669
+ ++
Sbjct: 213 FQHLMQ 218
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 613 GESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKEL---TPLHLCVATWNVAVVK---- 665
GE+ LH A + A+V++E + S+ T LH+ V NV +V+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 666 RWVEVAS----------PEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAG 715
R V++ P ++ + P+ A C+ + E+VR+L+ G
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGE--HPLSFAACVGS----------EEIVRLLIEHG 144
Query: 716 AEPTAQDAQNRTALHI 731
A+ AQD+ T LHI
Sbjct: 145 ADIRAQDSLGNTVLHI 160
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGXK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
A G+ LH + +IK +N+LLD + A +SD+GLA A K SRI
Sbjct: 134 ANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQXVXXSRI-- 186
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTG 363
+ + Y APEA I+P+SD +SFG L+E+ TG
Sbjct: 187 -----VGTTAYXAPEALRG-------------EITPKSDIYSFGVVLLEIITG 221
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 35/211 (16%)
Query: 575 LREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILE 634
L+ G + H+ A G+ + +L AGA + G + LH A + CA V+L+
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 635 NGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAA 694
P H A+ + + V P P
Sbjct: 100 P--------------RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP--------- 136
Query: 695 ALKKDHEVEGR-ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNI 753
++E E R E R+ L A ++ T LH+A + D E+V+++ DAG D+N
Sbjct: 137 ----ENEEEPRDEDWRLQLEA------ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 754 -RNVHNTIPLHVALARGAKSCVGLLLSAGAD 783
PLH+A+ A S + LLL AGAD
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 23/200 (11%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALI- 565
QN GQTALHLA G A VE L + V V ++ G L A + C L+
Sbjct: 41 QNDLGQTALHLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 566 ------KRGANVISRLREGFGPSVAHV-CAYHGQPDCMRELLLAGAD----PNAVDDEGE 614
+ ++ + P +H A QP+ E D A + +G
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 615 SVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE----LTPLHLCVATWNVAVVKRWVEV 670
+ LH AV K + ++ + G A LN E TPLHL V +V++ ++
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK- 213
Query: 671 ASPEEIVNVIDIPGPVGTAL 690
A + + P+G+AL
Sbjct: 214 AGADPTARMYGGRTPLGSAL 233
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 44/262 (16%)
Query: 510 DGQTALHLACRRGSAELVEAILEYS--QENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
DG TALHLA ++ +L +S E +D+ + G L A G V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 568 GANVISRLREGFGP------SVAHVCA---YHGQP----DCMRELLLAGAD--------P 606
GA V+ R G AH CA +P D L D P
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 607 NAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKR 666
AVD + + D + + N TPLH+ V + +V+
Sbjct: 128 AAVDSQPNP--ENEEEPRDEDWRL---------QLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 667 WVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNR 726
+ + ++ P P C L E + ++ +LL AGA+PTA+ R
Sbjct: 177 LRDAGAD------LNKPEPT----CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR 226
Query: 727 TALHIASMANDVELVKIILDAG 748
T L A + + L +++ G
Sbjct: 227 TPLGSALLRPNPILARLLRAHG 248
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 35/211 (16%)
Query: 575 LREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILE 634
L+ G + H+ A G+ + +L AGA + G + LH A + CA V+L+
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 635 NGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAA 694
P H A+ + + V P P
Sbjct: 100 P--------------RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP--------- 136
Query: 695 ALKKDHEVEGR-ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNI 753
++E E R E R+ L A ++ T LH+A + D E+V+++ DAG D+N
Sbjct: 137 ----ENEEEPRDEDWRLQLEA------ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 754 -RNVHNTIPLHVALARGAKSCVGLLLSAGAD 783
PLH+A+ A S + LLL AGAD
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 23/200 (11%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALI- 565
QN GQTALHLA G A VE L + V V ++ G L A + C L+
Sbjct: 41 QNDLGQTALHLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 566 ------KRGANVISRLREGFGPSVAHV-CAYHGQPDCMRELLLAGAD----PNAVDDEGE 614
+ ++ + P +H A QP+ E D A + +G
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 615 SVLHRAVAKKYTDCAIVILENGGCRSMAILNSKE----LTPLHLCVATWNVAVVKRWVEV 670
+ LH AV K + ++ + G A LN E TPLHL V +V++ ++
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK- 213
Query: 671 ASPEEIVNVIDIPGPVGTAL 690
A + + P+G+AL
Sbjct: 214 AGADPTARMYGGRTPLGSAL 233
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 44/262 (16%)
Query: 510 DGQTALHLACRRGSAELVEAILEYS--QENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
DG TALHLA ++ +L +S E +D+ + G L A G V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 568 GANVISRLREGFGP------SVAHVCA---YHGQP----DCMRELLLAGAD--------P 606
GA V+ R G AH CA +P D L D P
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 607 NAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKR 666
AVD + + D + + N TPLH+ V + +V+
Sbjct: 128 AAVDSQPNP--ENEEEPRDEDWRL---------QLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 667 WVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNR 726
+ + ++ P P C L E + ++ +LL AGA+PTA+ R
Sbjct: 177 LRDAGAD------LNKPEPT----CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR 226
Query: 727 TALHIASMANDVELVKIILDAG 748
T L A + + L +++ G
Sbjct: 227 TPLGSALLRPNPILARLLRAHG 248
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 1 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 54
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 55 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 161
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+ T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 162 THEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 207
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 208 DSEIDQLFR 216
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 135 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 186
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R ++ + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 187 ARANAFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 230
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 231 PFRAGNEYLIFQKIIK 246
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 236 GRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPA 295
G L L Q+L + +A G+V L V ++ N L+ + D+G++
Sbjct: 124 GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR------ 177
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
+ S+ + TML + PE+ K + ESD WSFG
Sbjct: 178 ------DIYSTDYYRVGGRTMLPIRWMPPESILYRK------------FTTESDVWSFGV 219
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS 414
L E+ T G PW LS E + + R+L A P E++ ++ C Q +
Sbjct: 220 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRAC------PPEVYAIMRGCWQREPQ 273
Query: 415 KRPTFSAMLATFLRHLQELPRSPPASPDT 443
+R + + A LQ L ++PP D
Sbjct: 274 QRHSIKDVHA----RLQALAQAPPVYLDV 298
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 114 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM----------- 162
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+ ++ +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 163 --TGDTYTAPAGAKFPIKWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 208
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 209 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 261
Query: 421 AMLATFLRHLQELPRSPPASPDTG 444
+ F QE S + G
Sbjct: 262 EIHQAFETMFQESSISDEVEKELG 285
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 15 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 68
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 69 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 175
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 176 ---YRAPEILLGXK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 221
Query: 377 R 377
R
Sbjct: 222 R 222
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 698 KDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVH 757
KD+ +G ++ R L G +P LH A+ +E+++ +L G D+N + H
Sbjct: 19 KDYVAKGEDVNRTL-EGGRKP----------LHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 758 NTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAA 802
+ PL A+ G SCV LLLS GAD + +G A + A
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA 112
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 546 DPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGAD 605
D ++AL G + V + +G +V L G P H A GQ + + LLL GAD
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP--LHYAADCGQLEILEFLLLKGAD 60
Query: 606 PNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSM 641
NA D + L AV + + C ++L G +++
Sbjct: 61 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 33.5 bits (75), Expect = 0.92, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 536 ENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDC 595
E+V+ + G PL +A G E + L+ +GA++ + + P ++ V Y G C
Sbjct: 26 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV--YEGHVSC 83
Query: 596 MRELLLAGADPNAVDDEGESVL 617
++ LL GAD +G + L
Sbjct: 84 VKLLLSKGADKTVKGPDGLTAL 105
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G+ LH A G E++E +L +++ DK PL+ A+ G CV L+ +GA+
Sbjct: 35 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 35/206 (16%)
Query: 231 MQRNEGR-LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA 289
+ + +GR L L +L + + +A+G+ L + + ++ N+LL A + D+GLA
Sbjct: 147 LDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLAR 206
Query: 290 ILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESD 349
+ DS+ I + N P W + + + + +SD
Sbjct: 207 DIMN----------DSNYI--------VKGNARLPVKWMAPESIFDCVY------TVQSD 242
Query: 350 AWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIG 406
WS+G L E+ + G P+ G+ + +VK+ + P +A P+ ++ ++
Sbjct: 243 VWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFA-------PKNIYSIMQ 295
Query: 407 ECLQFKASKRPTFSAMLATFLRHLQE 432
C + + RPTF + + QE
Sbjct: 296 ACWALEPTHRPTFQQICSFLQEQAQE 321
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 216 LGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD 275
L L + C S+Q + L Q+ Y D + LH+ G+V +++KP+N+ L
Sbjct: 132 LYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLG 191
Query: 276 ASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
GR + D+GL L + + E D P Y APE
Sbjct: 192 PRGRCKLGDFGLLVELGTAGAGEVQ-EGD--------------PRYMAPE---------- 226
Query: 336 LFWDDAIGISPESDAWSFGCTLVEM-CTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
+ G + +D +S G T++E+ C +P G +++ + LPP++ +
Sbjct: 227 -LLQGSYGTA--ADVFSLGLTILEVACNMELPHGGEGWQQL-----RQGYLPPEFTA--- 275
Query: 395 VGIPRELWKMIGECLQFKASKRPTFSAMLA 424
G+ EL ++ L+ R T A+LA
Sbjct: 276 -GLSSELRSVLVMMLEPDPKLRATAEALLA 304
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 236 GRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPA 295
G L L Q+L + +A G+V L V ++ N L+ + D+G++
Sbjct: 130 GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR------ 183
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
+ S+ + TML + PE+ K + ESD WSFG
Sbjct: 184 ------DIYSTDYYRVGGRTMLPIRWMPPESILYRK------------FTTESDVWSFGV 225
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS 414
L E+ T G PW LS E + + R+L A P E++ ++ C Q +
Sbjct: 226 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRAC------PPEVYAIMRGCWQREPQ 279
Query: 415 KRPTFSAMLATFLRHLQELPRSPPASPDT 443
+R + + A LQ L ++PP D
Sbjct: 280 QRHSIKDVHA----RLQALAQAPPVYLDV 304
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 37/250 (14%)
Query: 132 VGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQ 189
+G + + V+K+GEG +G VA+KK+ + E E P +
Sbjct: 2 LGSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGA 248
+ L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 56 ISLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLF 113
Query: 249 DIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRI 308
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R
Sbjct: 114 QLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RT 162
Query: 309 HSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWA 368
+ T+ Y APE K ++ A+ D WS GC EM T +
Sbjct: 163 YXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFP 208
Query: 369 GLSA-EEIYR 377
G S ++++R
Sbjct: 209 GDSEIDQLFR 218
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 12 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 65
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 66 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 124 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 172
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 173 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 218
Query: 377 R 377
R
Sbjct: 219 R 219
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 236 GRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPA 295
G L L Q+L + +A G+V L V ++ N L+ + D+G++
Sbjct: 153 GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSR------ 206
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
+ S+ + TML + PE+ K + ESD WSFG
Sbjct: 207 ------DIYSTDYYRVGGRTMLPIRWMPPESILYRK------------FTTESDVWSFGV 248
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKAS 414
L E+ T G PW LS E + + R+L A P E++ ++ C Q +
Sbjct: 249 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRAC------PPEVYAIMRGCWQREPQ 302
Query: 415 KRPTFSAMLATFLRHLQELPRSPPASPDT 443
+R + + A LQ L ++PP D
Sbjct: 303 QRHSIKDVHA----RLQALAQAPPVYLDV 327
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 46/237 (19%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 66 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 124
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 168
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y +PE + S+ +SD WS G +LVEM G P A+E R +
Sbjct: 169 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEDSRPPM 216
Query: 381 KNRKL--------PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRH 429
+L PP+ S V E + +CL K P A L + H
Sbjct: 217 AIFELLDYIVNEPPPKLPSGV---FSLEFQDFVNKCL----IKNPAERADLKQLMVH 266
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 227 VQLAMQRNEGRLTLEQILR------YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
+Q MQ + R+ Q+L + R V LH + V+ ++KPSNLL++++
Sbjct: 92 IQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDL 151
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
V D+GLA I+ + A + P S M + + Y APE K
Sbjct: 152 KVCDFGLARIIDESAADNSEPTGQ----QSGMTEXVATRWYRAPEVMLTSAK-------- 199
Query: 341 AIGISPESDAWSFGCTLVEM 360
S D WS GC L E+
Sbjct: 200 ---YSRAMDVWSCGCILAEL 216
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 3 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 56
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 57 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQ 114
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 163
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 164 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 209
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 210 DSEIDQLFR 218
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 46/262 (17%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
NV F GVL D L + + G +++ ++ + + Q + + DIA G+ LH+
Sbjct: 68 NVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM 127
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAIL----KKPACRKARPECDSSRIHSCMDCTM 316
++ ++ N L+ + VV+D+GLA ++ +P ++ + D + ++ +
Sbjct: 128 NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVG--- 184
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
+P + APE +D+ + D +SFG L E+ I + +
Sbjct: 185 -NPYWMAPEMIN------GRSYDEKV------DVFSFGIVLCEI----IGRVNADPDYLP 227
Query: 377 RAV--------VKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM---LAT 425
R + +R PP P + + C KRP+F + L T
Sbjct: 228 RTMDFGLNVRGFLDRYCPPN--------CPPSFFPITVRCCDLDPEKRPSFVKLEHWLET 279
Query: 426 FLRHLQ-ELPRSPPASP-DTGF 445
HL LP P D GF
Sbjct: 280 LRMHLAGHLPLGPQLEQLDRGF 301
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 93 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 151
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 152 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 195
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 196 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 238
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 37/250 (14%)
Query: 132 VGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQ 189
+G + + V+K+GEG +G VA+KK+ + E E P +
Sbjct: 3 LGSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIRE 56
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGA 248
+ L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 57 ISLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLF 114
Query: 249 DIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRI 308
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R
Sbjct: 115 QLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RT 163
Query: 309 HSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWA 368
+ T+ Y APE K ++ A+ D WS GC EM T +
Sbjct: 164 YXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFP 209
Query: 369 GLSA-EEIYR 377
G S ++++R
Sbjct: 210 GDSEIDQLFR 219
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 41/252 (16%)
Query: 132 VGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQ 189
+G + + V+K+GEG +G VA+KK+ + E E P +
Sbjct: 2 LGSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLT---LEQILRY 246
+ L+ + N+ V+ ++ L LV + + S+ L + LT L I Y
Sbjct: 56 ISLLKELNH--PNIVKLLDVIHTENKLYLVFE--FLSMDLKKFMDASALTGIPLPLIKSY 111
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPV----------- 160
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
R + T+ Y APE K ++ A+ D WS GC EM T
Sbjct: 161 RTYXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRAL 206
Query: 367 WAGLSA-EEIYR 377
+ G S ++++R
Sbjct: 207 FPGDSEIDQLFR 218
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKIXDFGLA--------R 172
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 173 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 218
Query: 358 VEMCT 362
EM +
Sbjct: 219 AEMLS 223
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
+ L+ +L++ DIA G+ L + ++ N +L V+D+GL
Sbjct: 144 IPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGL---------- 193
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
S +I+S D P W ++ + + + +SD W+FG T+
Sbjct: 194 -------SKKIYSG-DYYRQGRIAKMPVKWIAIESLADRVY------TSKSDVWAFGVTM 239
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G P+ G+ E+Y ++ +L + EL++++ C + R
Sbjct: 240 WEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCL------DELYEIMYSCWRTDPLDR 293
Query: 417 PTFSAMLATFLRHLQELP 434
PTFS + + L+ LP
Sbjct: 294 PTFSVLRLQLEKLLESLP 311
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 15 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 68
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 69 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 175
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 176 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 221
Query: 377 R 377
R
Sbjct: 222 R 222
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 128 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 186
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 187 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 230
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 231 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 273
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 141 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLA--------R 192
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 193 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 238
Query: 358 VEMCT 362
EM +
Sbjct: 239 AEMLS 243
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 177 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLA--------R 172
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 173 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 218
Query: 358 VEMCT 362
EM +
Sbjct: 219 AEMLS 223
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLA--------R 172
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 173 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 218
Query: 358 VEMCT 362
EM +
Sbjct: 219 AEMLS 223
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 177 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 2 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 55
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 56 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 162
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 163 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 208
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 209 DSEIDQLFR 217
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 37/219 (16%)
Query: 216 LGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L LVM+ G ++ +QR+ RL ++L Y + I +G+ L + V ++ N+L+
Sbjct: 88 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV 147
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAW-EPVKKS 333
++ ++D+GLA +L D ++ +P W P S
Sbjct: 148 ESEAHVKIADFGLAKLLPLDK-----------------DYYVVREPGQSPIFWYAPESLS 190
Query: 334 LNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIV 393
N+F S +SD WSFG L E+ T SA E R + R +P +
Sbjct: 191 DNIF-------SRQSDVWSFGVVLYELFTYCDKSCSPSA-EFLRMMGSERDVPALSRLLE 242
Query: 394 GV----------GIPRELWKMIGECLQFKASKRPTFSAM 422
+ P E+ +++ C RP+FSA+
Sbjct: 243 LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSAL 281
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R+ + + +LE +VD +D++G L+F GS +CV L + GA++ R
Sbjct: 51 AARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRA 620
G G + H+ A + +P+ + L+ GAD D+ G + L A
Sbjct: 109 G-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 720 AQDAQNRTAL-HIASMANDVELVKIILDAGVDVNIRNVHNTI-PLHVALARGAKSCVGLL 777
A D RTAL +A + +D + V+++ +AG D++ R++ + LH+A V L
Sbjct: 71 AVDENGRTALLFVAGLGSD-KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 778 LSAGADCNWQDDEGDNAFHIAADAAK 803
+ GAD +D+ G A +A + K
Sbjct: 130 VELGADIEVEDERGLTALELAREILK 155
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN-RTALHIASMA 735
V+ +D G TAL A L D + VR+L AGA+ +D + TALH+A+
Sbjct: 69 VDAVDENGR--TALLFVAGLGSD------KCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120
Query: 736 NDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V+ +++ G D+ + + L +A
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A A++ L +++ D VD N + L G+ CV LL AGAD + +D G
Sbjct: 52 ARKADEQALSQLLEDRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRG 109
Query: 792 D-NAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT----LRDFLEGLPR 842
A H+ AA +R + +V L A +EV + G T R+ L+ P+
Sbjct: 110 GLTALHM---AAGYVRPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPK 159
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 2 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 55
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 56 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPV-----------RTY 162
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 163 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 208
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 209 DSEIDQLFR 217
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 692 MAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDV 751
+ A L+ ++ + +++ IL + D + T L+IA ND+E+ K ++D G D+
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 752 NIRNVHNTIPLHVALARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIAADAAKMIRENLE 810
N++N + P A A+G + +L A D N + G NA AA+ + +N++
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI--DNVK 123
Query: 811 WLIVMLSHPDAAVEVRNHSGKTLRDFLEGLPRE--WISEDLMEALMNRGVHLS 861
++L ++ +N G T GL RE + +D+++ LM G S
Sbjct: 124 ---LLLEDGREDIDFQNDFGYTALIEAVGL-REGNQLYQDIVKLLMENGADQS 172
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 45/233 (19%)
Query: 514 ALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVIS 573
AL A + + V+ IL+ + VD +D +G+ PL A+ E ALI RGA++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-- 65
Query: 574 RLREGFGPSVAHVCAYHGQPDCMRELLL-AGADPNAVDDEGESVLHRAVAKKYTDCAIVI 632
L+ S G+ + + +L A D N + G + L A K + D ++
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 633 LENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVG-TALC 691
LE+G ID G TAL
Sbjct: 126 LEDGR----------------------------------------EDIDFQNDFGYTALI 145
Query: 692 MAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKII 744
A L++ +++ +++V++L+ GA+ + +D RTA+ A+ E+ KI+
Sbjct: 146 EAVGLREGNQLY-QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
QN+ + A +G E++ +L+++ +++ ++ G L+ A G + V L++
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 567 RGANVISRLRE-GFGPSVAHVCAYHGQP---DCMRELLLAGADPNAVDDEGESVLHRAVA 622
G I + G+ + V G D ++ L+ GAD + D+ G + + A
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
Query: 623 KKYTDCAIVILE 634
K YT+ + ++ +
Sbjct: 188 KGYTEISKILAQ 199
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 2 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 55
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 56 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 162
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 163 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 208
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 209 DSEIDQLFR 217
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 227 VQLAMQRNEGRLTLEQILR------YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRA 280
+Q MQ + R+ Q+L + R V LH + V+ ++KPSNLL++++
Sbjct: 92 IQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDL 151
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
V D+GLA I+ + A + P S M + + Y APE K
Sbjct: 152 KVCDFGLARIIDESAADNSEPTGQ----QSGMTEYVATRWYRAPEVMLTSAK-------- 199
Query: 341 AIGISPESDAWSFGCTLVEM 360
S D WS GC L E+
Sbjct: 200 ---YSRAMDVWSCGCILAEL 216
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGA 770
LL GA P QDA + +H A+ ++ +K++++ G DVN + ++P+H+A+ G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 771 KSCVGLLLSAGADCNWQDDEGDNAFHIA 798
S V L+ +D + +D G +A
Sbjct: 122 SSVVS-FLAPESDLHHRDASGLTPLELA 148
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 579 FGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGC 638
FG + V + G P ELL GA PN D G S +H A + D V++E+G
Sbjct: 43 FGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA- 100
Query: 639 RSMAILNSKELTPLHLCVATWNVAVVK 665
+ L+S P+HL + + +VV
Sbjct: 101 -DVNALDSTGSLPIHLAIREGHSSVVS 126
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A RG + V +L + D L++ G L + GSP L+K+GA+ +++
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGAS--PNVQD 73
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYT 626
G S H A G D ++ L+ GAD NA+D G +H A+ + ++
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 122
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 140 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 191
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 192 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 235
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 236 PFRAGNEYLIFQKIIK 251
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 135 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 186
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 187 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 230
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 231 PFRAGNEYLIFQKIIK 246
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 135 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 186
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 187 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 230
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 231 PFRAGNEYLIFQKIIK 246
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 189 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 233 PFRAGNEYLIFQKIIK 248
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 189 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 233 PFRAGNEYLIFQKIIK 248
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 142 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 193
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 194 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 237
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 238 PFRAGNEYLIFQKIIK 253
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 135 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 186
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 187 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 230
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 231 PFRAGNEYLIFQKIIK 246
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 138 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 189
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 190 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 233
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 234 PFRAGNEYLIFQKIIK 249
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 189 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 233 PFRAGNEYLIFQKIIK 248
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 112 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 163
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 164 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 207
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 208 PFRAGNEYLIFQKIIK 223
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 114 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 165
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 166 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 209
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 210 PFRAGNEYLIFQKIIK 225
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 115 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 166
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 167 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 210
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 211 PFRAGNEYLIFQKIIK 226
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A R+ + + +LE +VD +D++G L+F GS +CV L + GA++ R
Sbjct: 52 AARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRA 620
G G + H+ A + +P+ + L+ GAD D+ G + L A
Sbjct: 110 G-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 720 AQDAQNRTAL-HIASMANDVELVKIILDAGVDVNIRNVHNTI-PLHVALARGAKSCVGLL 777
A D RTAL +A + +D + V+++ +AG D++ R++ + LH+A V L
Sbjct: 72 AVDENGRTALLFVAGLGSD-KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 778 LSAGADCNWQDDEGDNAFHIAADAAK 803
+ GAD +D+ G A +A + K
Sbjct: 131 VELGADIEVEDERGLTALELAREILK 156
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 677 VNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQN-RTALHIASMA 735
V+ +D G TAL A L D + VR+L AGA+ +D + TALH+A+
Sbjct: 70 VDAVDENGR--TALLFVAGLGSD------KCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121
Query: 736 NDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+V+ +++ G D+ + + L +A
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
A A++ L +++ D VD N + L G+ CV LL AGAD + +D G
Sbjct: 53 ARKADEQALSQLLEDRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRG 110
Query: 792 D-NAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT----LRDFLEGLPR 842
A H+ AA +R + +V L A +EV + G T R+ L+ P+
Sbjct: 111 GLTALHM---AAGYVRPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPK 160
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 119 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 170
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 171 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 214
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 215 PFRAGNEYLIFQKIIK 230
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 113 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 164
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 165 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 208
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 209 PFRAGNEYLIFQKIIK 224
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 3 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 56
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 57 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 163
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 164 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 209
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 210 DSEIDQLFR 218
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 134 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 185
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 186 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 229
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I++ ++K
Sbjct: 230 PFRAGNEYLIFQKIIK 245
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
A G+ LH + +IK +N+LLD + A +SD+GLA A K SRI
Sbjct: 143 ANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQTVMXSRI-- 195
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTG 363
+ + Y APEA I+P+SD +SFG L+E+ TG
Sbjct: 196 -----VGTTAYMAPEALRG-------------EITPKSDIYSFGVVLLEIITG 230
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 711 LLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGA 770
LL GA P QDA + +H A+ ++ +K++++ G DVN + ++P+H+A+ G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 771 KSCVGLLLSAGADCNWQDDEGDNAFHIA 798
S V L+ +D + +D G +A
Sbjct: 120 SSVVS-FLAPESDLHHRDASGLTPLELA 146
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 579 FGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGC 638
FG + V + G P ELL GA PN D G S +H A + D V++E+G
Sbjct: 41 FGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA- 98
Query: 639 RSMAILNSKELTPLHLCVATWNVAVVK 665
+ L+S P+HL + + +VV
Sbjct: 99 -DVNALDSTGSLPIHLAIREGHSSVVS 124
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLRE 577
A RG + V +L + D L++ G L + GSP L+K+GA+ +++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGAS--PNVQD 71
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
G S H A G D ++ L+ GAD NA+D G +H A+ + ++ +
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
Query: 638 CRSMAILNSKELTPLHLC 655
++ LTPL L
Sbjct: 132 LHHR---DASGLTPLELA 146
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 1 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 54
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 55 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPV-----------RTY 161
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 162 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 207
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 208 DSEIDQLFR 216
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 129 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 180
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 181 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 226
Query: 358 VEMCT 362
EM +
Sbjct: 227 AEMLS 231
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 172
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 173 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 218
Query: 358 VEMCT 362
EM +
Sbjct: 219 AEMLS 223
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 177 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 172
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 173 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 218
Query: 358 VEMCT 362
EM +
Sbjct: 219 AEMLS 223
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 174
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 175 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 220
Query: 358 VEMCT 362
EM +
Sbjct: 221 AEMLS 225
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 126 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 177
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 178 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 223
Query: 358 VEMCT 362
EM +
Sbjct: 224 AEMLS 228
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 174
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 175 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 220
Query: 358 VEMCT 362
EM +
Sbjct: 221 AEMLS 225
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 119 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 170
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 171 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 216
Query: 358 VEMCT 362
EM +
Sbjct: 217 AEMLS 221
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 127 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 178
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 179 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 224
Query: 358 VEMCT 362
EM +
Sbjct: 225 AEMLS 229
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 118 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 169
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 170 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 215
Query: 358 VEMCT 362
EM +
Sbjct: 216 AEMLS 220
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 141 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 192
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 193 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 238
Query: 358 VEMCT 362
EM +
Sbjct: 239 AEMLS 243
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 177 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 177 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 119 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 170
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D T Y A + + LN + G + D WS GC L
Sbjct: 171 VADPDHDH---------TGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIWSVGCIL 216
Query: 358 VEMCT 362
EM +
Sbjct: 217 AEMLS 221
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 447 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 505
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H +P + +N
Sbjct: 506 QHYAKISDFGLSKALR------ADENYYKAQTHGKWPVKWYAP------------ECINY 547
Query: 337 FWDDAIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ S +SD WSFG + E G P+ G+ E+ + K ++
Sbjct: 548 Y-----KFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 596
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 597 GCPREMYDLMNLCWTYDVENRPGFAAV 623
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 446 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 504
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H +P + +N
Sbjct: 505 QHYAKISDFGLSKALR------ADENYYKAQTHGKWPVKWYAP------------ECINY 546
Query: 337 FWDDAIGISPESDAWSFGCTLVE-MCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ S +SD WSFG + E G P+ G+ E+ + K ++
Sbjct: 547 Y-----KFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 595
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 596 GCPREMYDLMNLCWTYDVENRPGFAAV 622
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 1 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 54
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 55 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 161
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 162 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 207
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 208 DSEIDQLFR 216
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 41/251 (16%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 1 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 54
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLT---LEQILRYG 247
L+ + N+ V+ ++ L LV + + S+ L + LT L I Y
Sbjct: 55 SLLKELNH--PNIVKLLDVIHTENKLYLVFE--FLSMDLKKFMDASALTGIPLPLIKSYL 110
Query: 248 ADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSR 307
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPV-----------R 159
Query: 308 IHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ T+ Y APE K ++ A+ D WS GC EM T +
Sbjct: 160 TYXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALF 205
Query: 368 AGLSA-EEIYR 377
G S ++++R
Sbjct: 206 PGDSEIDQLFR 216
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 651 PLHLCVATWNVAVVKRWVE--VASPEEIVNVIDIPGPVG-TALCMAAALKKDHEVEGREL 707
PLH W+V+ + + S E VN+ D P G T +A + V E+
Sbjct: 39 PLH-----WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS------VGNLEV 87
Query: 708 VRILLTAGAEPTAQDAQNR--TALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
V+ L +P N+ T LH+A E+ + +++ G V I++ N IPLH A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 766 LARGAKSCVGLLLSAGADC-NWQDDEG-DNAFHIAA----DAAKMIRE 807
+ G+ + LL G NWQD +G FH A DAA ++ E
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 515 LHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV-IS 573
LH AC V+ +L + D+DG PL ++++ + E L+ + NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 574 RLREGFGPSVAHVCAYHGQPDCMRELLLAGADP--NAVDDEGESVLHRAVAKKYTDCAIV 631
+ G + H+ G + ++ L P N + ++G + LH AV KK+ + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 632 ILENGGCRSMAILNSKELTPLHLCVATWNVAVVK 665
++ENG S+ I + PLH + ++ +++
Sbjct: 126 LIENGA--SVRIKDKFNQIPLHRAASVGSLKLIE 157
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 512 QTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
Q LH A GS +L+E + + V+ DK G PL ALA G + L+++
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 71/351 (20%), Positives = 123/351 (35%), Gaps = 54/351 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLS----GQLDNLRRA 196
+ KLGEG A V G + VA+K++ + E + L +L+ A
Sbjct: 7 LDKLGEGTYATV------YKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHA 60
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVE 256
N+ T H ++ + L LV + ++ + + + + + + RG+
Sbjct: 61 -----NIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAY 115
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
H V+ ++KP NLL++ G ++D+GLA P D +
Sbjct: 116 CHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--------------KTYDNEV 161
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
++ Y P+ + S + D W GC EM TG + G + EE
Sbjct: 162 VTLWYRPPD-----------ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQL 210
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRS 436
+ + P + E W I +FK P + A L H L S
Sbjct: 211 HFIFRILGTPTE-----------ETWPGILSNEEFKTYNYPKYRA--EALLSHAPRLD-S 256
Query: 437 PPASPDTGFTKFSTSNETEPSPASDVEVFQDNPNNLHQLVSEGDVSGVRDL 487
A T +F N A F +H+L + ++++
Sbjct: 257 DGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEI 307
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 44/247 (17%)
Query: 151 GVEVWGAWIGGGQGRCRHSVAVKKVM--IAEEMEPDWLSGQLDNLRRASMWCRNVCTFHG 208
G +GA GR VA+KK+ E+ +L L+ M NV
Sbjct: 34 GSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH--MRHENVIGLLD 91
Query: 209 VLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGAD--------IARGVVELHAA 260
V D L D + V M + G+L + L G D + +G+ +HAA
Sbjct: 92 VFTPDETLDDFTD--FYLVMPFMGTDLGKLMKHEKL--GEDRIQFLVYQMLKGLRYIHAA 147
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
G++ ++KP NL ++ + D+GLA R+A E M +++
Sbjct: 148 GIIHRDLKPGNLAVNEDCELKILDFGLA--------RQADSE---------MXGXVVTRW 190
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
Y APE L W + + D WS GC + EM TG + G + + ++
Sbjct: 191 YRAPEVI--------LNW---MRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIM 239
Query: 381 KNRKLPP 387
K PP
Sbjct: 240 KVTGTPP 246
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 66 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 124
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 168
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 169 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 211
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 115/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+A
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRA------------AL 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 115/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKNSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+A
Sbjct: 121 LSYCHSKKVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRA------------AL 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 DTYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 38/191 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKP-A 295
+T+E ++ Y +ARG+ L + + ++ N+LL + + D+GLA I K P
Sbjct: 196 ITMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDY 255
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
RK T L + APE+ +F D I S +SD WS+G
Sbjct: 256 VRKGD--------------TRLPLKWMAPES---------IF--DKI-YSTKSDVWSYGV 289
Query: 356 TLVEMCT-GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ + G P+ G+ +E + + ++ R P+Y++ E+++++ +C
Sbjct: 290 LLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYST-------PEIYQIMLDCWHRD 342
Query: 413 ASKRPTFSAML 423
+RP F+ ++
Sbjct: 343 PKERPRFAELV 353
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 35/227 (15%)
Query: 155 WGAWIGGGQGRCRH---SVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRN--VCTFHGV 209
GA GG + +H + + + +I E++P + Q+ + C + + F+G
Sbjct: 24 LGAGNGGVVTKVQHRPSGLIMARKLIHLEIKP-AIRNQIIRELQVLHECNSPYIVGFYGA 82
Query: 210 LRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA-GVVCMNIK 268
D + + M+ G + + R+ E + + + RG+ L ++ ++K
Sbjct: 83 FYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVK 142
Query: 269 PSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWE 328
PSN+L+++ G + D+G++ L I S + + + +Y APE +
Sbjct: 143 PSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRSYMAPERLQ 186
Query: 329 PVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
S+ +SD WS G +LVE+ G P A+E+
Sbjct: 187 GTHYSV------------QSDIWSMGLSLVELAVGRYPIPPPDAKEL 221
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 121/299 (40%), Gaps = 49/299 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
V+ +++LGE R V G G G +VA+K + E P + + + RA
Sbjct: 11 VRFMEELGEDRFGKV-YKGHLFGPAPGEQTQAVAIKTLKDKAE-GPLREEFRHEAMLRAR 68
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQ--LAMQRN-------------EGRLTLE 241
+ NV GV+ D L ++ C +G + L M+ + L
Sbjct: 69 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 242 QILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARP 301
+ A IA G+ L + VV ++ N+L+ +SD GL
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFR------------ 176
Query: 302 ECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMC 361
E ++ + + ++L + APEA K S++ SD WS+G L E+
Sbjct: 177 EVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSID------------SDIWSYGVVLWEVF 224
Query: 362 T-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+ G P+ G S +++ +++NR++ P P ++ ++ EC S+RP F
Sbjct: 225 SYGLQPYCGYSNQDVVE-MIRNRQVLP-----CPDDCPAWVYALMIECWNEFPSRRPRF 277
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 41/252 (16%)
Query: 132 VGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQ 189
+G + + V+K+GEG +G VA+KK+ + E E P +
Sbjct: 2 LGSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLT---LEQILRY 246
+ L+ + N+ V+ ++ L LV + + S+ L + LT L I Y
Sbjct: 56 ISLLKELNH--PNIVKLLDVIHTENKLYLVFE--FLSMDLKDFMDASALTGIPLPLIKSY 111
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV----------- 160
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
R + T+ Y APE K ++ A+ D WS GC EM T
Sbjct: 161 RTYXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRAL 206
Query: 367 WAGLSA-EEIYR 377
+ G S ++++R
Sbjct: 207 FPGDSEIDQLFR 218
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 66 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 124
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 168
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 169 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 211
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 1 GHMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 54
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + + ++ M + + L I Y
Sbjct: 55 SLLKELNH--PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 161
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 162 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 207
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 208 DSEIDQLFR 216
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 44/233 (18%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 85 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 143
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 144 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 187
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE----EIY 376
Y +PE + S+ +SD WS G +LVEM G P S E+
Sbjct: 188 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIGSGSGSMAIFELL 235
Query: 377 RAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRH 429
+V PP+ S V E + +CL K P A L + H
Sbjct: 236 DYIVNEP--PPKLPSGV---FSLEFQDFVNKCL----IKNPAERADLKQLMVH 279
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 66 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 124
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 168
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 169 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 211
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 203 VCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL-RYGADIARGVVELHAA- 260
+ F+G D + + M+ G + + GR+ EQIL + + +G+ L
Sbjct: 66 IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIP-EQILGKVSIAVIKGLTYLREKH 124
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++KPSN+L+++ G + D+G++ L I S + + + +
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL----------------IDSMANSFVGTRS 168
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
Y +PE + S+ +SD WS G +LVEM G P A+E+
Sbjct: 169 YMSPERLQGTHYSV------------QSDIWSMGLSLVEMAVGRYPIPPPDAKEL 211
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 41/252 (16%)
Query: 132 VGVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQ 189
+G + + V+K+GEG +G VA+KK+ + E E P +
Sbjct: 1 LGSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIRE 54
Query: 190 LDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLT---LEQILRY 246
+ L+ + N+ V+ ++ L LV + + S+ L + LT L I Y
Sbjct: 55 ISLLKELNH--PNIVKLLDVIHTENKLYLVFE--FLSMDLKDFMDASALTGIPLPLIKSY 110
Query: 247 GADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSS 306
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV----------- 159
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
R + T+ Y APE K ++ A+ D WS GC EM T
Sbjct: 160 RTYXHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRAL 205
Query: 367 WAGLSA-EEIYR 377
+ G S ++++R
Sbjct: 206 FPGDSEIDQLFR 217
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 651 PLHLCVATWNVAVVKRWVE--VASPEEIVNVIDIPGPVG-TALCMAAALKKDHEVEGREL 707
PLH W+V+ + + S E VN+ D P G T +A + V E+
Sbjct: 39 PLH-----WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS------VGNLEV 87
Query: 708 VRILLTAGAEPTAQDAQNR--TALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
V+ L +P N+ T LH+A E+ + +++ G V I++ N IPLH A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 766 LARGAKSCVGLLLSAGADC-NWQDDEG-DNAFHIAA----DAAKMIRE 807
+ G+ + LL G NWQD +G FH A DAA ++ E
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 515 LHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV-IS 573
LH AC V+ +L + D+DG PL ++++ + E L+ + NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 574 RLREGFGPSVAHVCAYHGQPDCMRELLLAGADP--NAVDDEGESVLHRAVAKKYTDCAIV 631
+ G + H+ G + ++ L P N + ++G + LH AV KK+ + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 632 ILENGGCRSMAILNSKELTPLHLCVATWNVAVVK 665
++ENG S+ I + PLH + ++ +++
Sbjct: 126 LIENGA--SVRIKDKFNQIPLHRAASVGSLKLIE 157
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
Q LH A GS +L+E + + V+ DK G PL ALA G + L+++
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 133 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 186
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 187 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 228
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 229 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 281
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 282 PSQRPTFKQLVEDLDR 297
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 129 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 182
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 183 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 224
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 225 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 277
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 278 PSQRPTFKQLVEDLDR 293
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 45/232 (19%)
Query: 541 LDKDGDPPLVFALAAGSPECVHALIK--RGANVISRLREGFGPSVAHVCAYHGQPDCMRE 598
L +DGD L A+ +I+ +G + + H+ QP+
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 599 LLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTP-LHLCVA 657
LL AG DP D G + LH A E G S+ +L TP LH +
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLAC------------EQGCLASVGVLTQSCTTPHLHSILK 108
Query: 658 TWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAE 717
N + +++ I G +G +V +L++ GA+
Sbjct: 109 ATNY----------NGHTCLHLASIHGYLG-------------------IVELLVSLGAD 139
Query: 718 PTAQDAQN-RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALAR 768
AQ+ N RTALH+A + +LV ++L G DVN P + R
Sbjct: 140 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 191
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 721 QDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
Q+ +T LH+A + N E+ + +L AG D +R+ PLH+A +G + VG+L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 611 DEGESVLHRAVAKKYTDCAIVILEN--GGCRSMAILNSKELTPLHLCVATWNVAVVKRWV 668
++G+S LH A+ + + ++ G + N+ + TPLHL V T + + +
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 669 EVASPEEIVNVIDIPG--PVGTAL---CMAAALKKDHEVEGRELVRILLTAGAEPTAQDA 723
E+ D G P+ A C+A+ L IL A +
Sbjct: 63 GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL-------KATNY 112
Query: 724 QNRTALHIASMANDVELVKIILDAGVDVNIRNVHN-TIPLHVALARGAKSCVGLLLSAGA 782
T LH+AS+ + +V++++ G DVN + N LH+A+ V LLL GA
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
Query: 783 DCN---------WQDDEGDNAFHIAADAAKMIRENLEWL 812
D N +Q G + I ++ ENL+ L
Sbjct: 173 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 211
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
QN QT LHLA E+ EA+L + + ++ D G+ PL A G V L +
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 567 RGA----NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDD-EGESVLHRAV 621
+ I + G + H+ + HG + L+ GAD NA + G + LH AV
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
Query: 622 AKKYTDCAIVILENGG 637
+ D ++L+ G
Sbjct: 157 DLQNPDLVSLLLKCGA 172
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N +G T LHLA G +VE ++ + +G L A+ +P+ V L+K
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 568 GANVISRLREGFGP 581
GA+V +G+ P
Sbjct: 171 GADVNRVTYQGYSP 184
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 511 GQTALHLACRRGSAELVEAILE-----YSQENVDVLDKDGDPPLVFALAAGSPECVHALI 565
G T LHLAC +G V + + + + + +G L A G V L+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGES 615
GA+V ++ G + H+ PD + LL GAD N V +G S
Sbjct: 135 SLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 729 LHIASMANDVEL-VKIILDAGVDVNIRNVHNTI---PLHVALARGAKSCVGLLLSAGADC 784
LH+A + + L +++I D+ N N + PLH+A+ LL AG D
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 785 NWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT 832
+D G+ H+A + + + H + ++ N++G T
Sbjct: 69 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 116
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 45/232 (19%)
Query: 541 LDKDGDPPLVFALAAGSPECVHALIK--RGANVISRLREGFGPSVAHVCAYHGQPDCMRE 598
L +DGD L A+ +I+ +G + + H+ QP+
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 599 LLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTP-LHLCVA 657
LL AG DP D G + LH A E G S+ +L TP LH +
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLAC------------EQGCLASVGVLTQSCTTPHLHSILK 111
Query: 658 TWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAE 717
N + +++ I G +G +V +L++ GA+
Sbjct: 112 ATNY----------NGHTCLHLASIHGYLG-------------------IVELLVSLGAD 142
Query: 718 PTAQDAQN-RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALAR 768
AQ+ N RTALH+A + +LV ++L G DVN P + R
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 721 QDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLL 777
Q+ +T LH+A + N E+ + +L AG D +R+ PLH+A +G + VG+L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 611 DEGESVLHRAVAKKYTDCAIVILEN--GGCRSMAILNSKELTPLHLCVATWNVAVVKRWV 668
++G+S LH A+ + + ++ G + N+ + TPLHL V T + + +
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 669 EVASPEEIVNVIDIPG--PVGTAL---CMAAALKKDHEVEGRELVRILLTAGAEPTAQDA 723
E+ D G P+ A C+A+ L IL A +
Sbjct: 66 GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL-------KATNY 115
Query: 724 QNRTALHIASMANDVELVKIILDAGVDVNIRNVHN-TIPLHVALARGAKSCVGLLLSAGA 782
T LH+AS+ + +V++++ G DVN + N LH+A+ V LLL GA
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 783 DCN---------WQDDEGDNAFHIAADAAKMIRENLEWL 812
D N +Q G + I ++ ENL+ L
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
QN QT LHLA E+ EA+L + + ++ D G+ PL A G V L +
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 567 RGA----NVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDD-EGESVLHRAV 621
+ I + G + H+ + HG + L+ GAD NA + G + LH AV
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 622 AKKYTDCAIVILENGG 637
+ D ++L+ G
Sbjct: 160 DLQNPDLVSLLLKCGA 175
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N +G T LHLA G +VE ++ + +G L A+ +P+ V L+K
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 568 GANVISRLREGFGP 581
GA+V +G+ P
Sbjct: 174 GADVNRVTYQGYSP 187
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 511 GQTALHLACRRGSAELVEAILE-----YSQENVDVLDKDGDPPLVFALAAGSPECVHALI 565
G T LHLAC +G V + + + + + +G L A G V L+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 566 KRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGES 615
GA+V ++ G + H+ PD + LL GAD N V +G S
Sbjct: 138 SLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 729 LHIASMANDVEL-VKIILDAGVDVNIRNVHNTI---PLHVALARGAKSCVGLLLSAGADC 784
LH+A + + L +++I D+ N N + PLH+A+ LL AG D
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 785 NWQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKT 832
+D G+ H+A + + + H + ++ N++G T
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 136 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 189
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 190 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 231
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 232 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 284
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 285 PSQRPTFKQLVEDLDR 300
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 47.0 bits (110), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D + + + + Y APE K G + D WS GC L
Sbjct: 177 VADPDHDHTGF---LXEXVATRWYRAPEIMLNSK-----------GYTKSIDIWSVGCIL 222
Query: 358 VEMCT 362
EM +
Sbjct: 223 AEMLS 227
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 47.0 bits (110), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ + I + I RG+ +H+A V+ ++KPSNLLL+ + + D+GLA R
Sbjct: 126 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA--------R 177
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
A P+ D + + + + Y APE K G + D WS GC L
Sbjct: 178 VADPDHDHTGF---LXEXVATRWYRAPEIMLNSK-----------GYTKSIDIWSVGCIL 223
Query: 358 VEMCT 362
EM +
Sbjct: 224 AEMLS 228
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 144 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 197
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 198 -----------RDIHH-IDXXKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 239
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 240 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 292
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 293 PSQRPTFKQLVEDLDR 308
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 121/299 (40%), Gaps = 49/299 (16%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
V+ +++LGE R V G G G +VA+K + E P + + + RA
Sbjct: 28 VRFMEELGEDRFGKV-YKGHLFGPAPGEQTQAVAIKTLKDKAE-GPLREEFRHEAMLRAR 85
Query: 198 MWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQ--LAMQRN-------------EGRLTLE 241
+ NV GV+ D L ++ C +G + L M+ + L
Sbjct: 86 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 242 QILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARP 301
+ A IA G+ L + VV ++ N+L+ +SD GL
Sbjct: 146 DFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFR------------ 193
Query: 302 ECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMC 361
E ++ + + ++L + APEA K S++ SD WS+G L E+
Sbjct: 194 EVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSID------------SDIWSYGVVLWEVF 241
Query: 362 T-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+ G P+ G S +++ +++NR++ P P ++ ++ EC S+RP F
Sbjct: 242 SYGLQPYCGYSNQDVVE-MIRNRQVLP-----CPDDCPAWVYALMIECWNEFPSRRPRF 294
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 137 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 190
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 191 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 232
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 233 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 285
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 286 PSQRPTFKQLVEDLDR 301
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 53/261 (20%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T L + LVM+ ++ +Q L E++ + G+ LH+AG
Sbjct: 90 NVFTPQKTLEEFQDVYLVMELMDANLXQVIQM---ELDHERMSYLLYQMLXGIKHLHSAG 146
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
++ ++KPSN+++ + + D+GLA ++ M +++ Y
Sbjct: 147 IIHRDLKPSNIVVKSDXTLKILDFGLAR---------------TAGTSFMMTPYVVTRYY 191
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE +G D WS GC + EM I + G + + V++
Sbjct: 192 RAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIE 239
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
+G P E K + ++ RP ++ + TF P P
Sbjct: 240 Q----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF----------PKLFP 276
Query: 442 DTGFTKFSTSNETEPSPASDV 462
D+ F S N+ + S A D+
Sbjct: 277 DSLFPADSEHNKLKASQARDL 297
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 651 PLHLCVATWNVAVVKRWVE--VASPEEIVNVIDIPGPVG-TALCMAAALKKDHEVEGREL 707
PLH W+V+ + + S E VN+ D P G T +A + V E+
Sbjct: 39 PLH-----WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS------VGNLEV 87
Query: 708 VRILLTAGAEPTAQDAQNR--TALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
V+ L +P N+ T LH+A E+ + +++ G V I++ N IPLH A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 766 LARGAKSCVGLLLSAGADC-NWQDDEG-DNAFHIAA----DAAKMIRE 807
+ G+ + LL G NWQD +G FH A DAA ++ E
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 515 LHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGANV-IS 573
LH AC V+ +L + D+DG PL ++++ + E L+ + NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 574 RLREGFGPSVAHVCAYHGQPDCMRELLLAGADP--NAVDDEGESVLHRAVAKKYTDCAIV 631
+ G + H+ G + ++ L P N + ++G + LH AV KK+ + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 632 ILENGGCRSMAILNSKELTPLHLCVATWNVAVVK 665
++ENG S+ I + PLH + ++ +++
Sbjct: 126 LIENGA--SVRIKDKFNQIPLHRAASVGSLKLIE 157
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
Q LH A GS +L+E + + V+ DK G PL ALA G + L+++
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 113/290 (38%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+A
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRA------------AL 169
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 170 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + +I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDF-------VTEGARDLISRLLKHNPSQRPMLREVL 258
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 144 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 197
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 198 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 239
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 240 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 292
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 293 PSQRPTFKQLVEDLDR 308
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 144 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 197
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 198 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 239
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 240 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 292
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 293 PSQRPTFKQLVEDLDR 308
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 189 ARANXFVG----TAQYVSPELL--TEKS----------AXKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I+ ++K
Sbjct: 233 PFRAGNEGLIFAKIIK 248
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 53/261 (20%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T L + LVM+ ++ +Q L E++ + G+ LH+AG
Sbjct: 90 NVFTPQKTLEEFQDVYLVMELMDANLXQVIQM---ELDHERMSYLLYQMLXGIKHLHSAG 146
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
++ ++KPSN+++ + + D+GLA ++ M +++ Y
Sbjct: 147 IIHRDLKPSNIVVKSDXTLKILDFGLAR---------------TAGTSFMMTPYVVTRYY 191
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE +G D WS GC + EM I + G + + V++
Sbjct: 192 RAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIE 239
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
+G P E K + ++ RP ++ + TF P P
Sbjct: 240 Q----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF----------PKLFP 276
Query: 442 DTGFTKFSTSNETEPSPASDV 462
D+ F S N+ + S A D+
Sbjct: 277 DSLFPADSEHNKLKASQARDL 297
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L I+ + L + ++ N L+ + V+D+GL+ ++
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--------- 163
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
D+ H+ + +TAPE+ + N F S +SD W+FG L E+ T
Sbjct: 164 -DTYTAHAGAKFPI---KWTAPESL-----AYNKF-------SIKSDVWAFGVLLWEIAT 207
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
G P+ G+ ++Y + K+ ++ P+ G P ++++++ C Q+ S RP+F+
Sbjct: 208 YGMSPYPGIDLSQVYELLEKDYRMERPE-------GCPEKVYELMRACWQWNPSDRPSFA 260
Query: 421 AMLATF 426
+ F
Sbjct: 261 EIHQAF 266
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 144 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 197
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 198 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 239
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 240 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 292
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 293 PSQRPTFKQLVEDLDR 308
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A+I + LH G++ ++KP N+LL+ ++D+G A +L PE
Sbjct: 137 YTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------PESKQ 188
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+R + + + Y +PE +KS SD W+ GC + ++ G
Sbjct: 189 ARANXFVG----TAQYVSPELL--TEKS----------ACKSSDLWALGCIIYQLVAGLP 232
Query: 366 PWAGLSAEEIYRAVVK 381
P+ + I+ ++K
Sbjct: 233 PFRAGNEGLIFAKIIK 248
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 218 LVMDRCYGSVQL------AMQRNE--GRLTLEQILRYGADIARGVVELHAAGVVCMNIKP 269
LVM+ CY +L M+ NE + ++Q+L GV LH +V ++KP
Sbjct: 113 LVME-CYKGGELFDEIIHRMKFNEVDAAVIIKQVLS-------GVTYLHKHNIVHRDLKP 164
Query: 270 SNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEA 326
NLLL++ + + D+GL+A+ + K R + + Y APE
Sbjct: 165 ENLLLESKEKDALIKIVDFGLSAVFENQKKMKER---------------LGTAYYIAPEV 209
Query: 327 WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKL- 385
L +D+ + D WS G L + G P+ G + +EI R V K +
Sbjct: 210 -------LRKKYDE------KCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTF 256
Query: 386 -PPQYASIVGVGIPRELWKMIGECLQFKASKR 416
P++ + + +I + LQF + +R
Sbjct: 257 DSPEWKN-----VSEGAKDLIKQMLQFDSQRR 283
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 53/261 (20%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T L + LVM+ ++ +Q L E++ + G+ LH+AG
Sbjct: 83 NVFTPQKTLEEFQDVYLVMELMDANLXQVIQM---ELDHERMSYLLYQMLXGIKHLHSAG 139
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
++ ++KPSN+++ + + D+GLA ++ M +++ Y
Sbjct: 140 IIHRDLKPSNIVVKSDXTLKILDFGLAR---------------TAGTSFMMTPYVVTRYY 184
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
APE +G D WS GC + EM I + G + + V++
Sbjct: 185 RAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIE 232
Query: 382 NRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASP 441
+G P E K + ++ RP ++ + TF P P
Sbjct: 233 Q----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF----------PKLFP 269
Query: 442 DTGFTKFSTSNETEPSPASDV 462
D+ F S N+ + S A D+
Sbjct: 270 DSLFPADSEHNKLKASQARDL 290
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+ R LL GA P +D +H A+ A ++ ++ +L+ DVNI + +PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 766 LARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIA 798
G V L+ ++ ++ +GD A +A
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RTAL + + N E+ + +L G + ++++ +H A G + LL AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN 97
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDF 836
+D+EG+ H+AA + +E+L+ H + V RNH G T D
Sbjct: 98 IEDNEGNLPLHLAAKEGHL--RVVEFLV---KHTASNVGHRNHKGDTACDL 143
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GFG + V G P+ R LLL GA+P+ D G +V+H A D +LE
Sbjct: 36 GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+ I +++ PLHL ++ VV+ V+
Sbjct: 95 --DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G LHLA + G +VE +++++ NV + GD A G E V +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 567 RGANVISRLR 576
GA + L+
Sbjct: 159 NGAGGATNLQ 168
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 37/219 (16%)
Query: 216 LGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L LVM+ G ++ +QR+ RL ++L Y + I +G+ L + V ++ N+L+
Sbjct: 101 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV 160
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAW-EPVKKS 333
++ ++D+GLA +L D ++ +P W P S
Sbjct: 161 ESEAHVKIADFGLAKLLPLDK-----------------DYYVVREPGQSPIFWYAPESLS 203
Query: 334 LNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIV 393
N+F S +SD WSFG L E+ T SA E R + R +P +
Sbjct: 204 DNIF-------SRQSDVWSFGVVLYELFTYCDKSCSPSA-EFLRMMGCERDVPALSRLLE 255
Query: 394 GV----------GIPRELWKMIGECLQFKASKRPTFSAM 422
+ P E+ +++ C RP+FSA+
Sbjct: 256 LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSAL 294
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 37/249 (14%)
Query: 133 GVHHDVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQL 190
G + + V+K+GEG +G VA+KK+ + E E P ++
Sbjct: 3 GSMENFQKVEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI 56
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGAD 249
L+ + N+ V+ ++ L LV + ++ M + + L I Y
Sbjct: 57 SLLKELNH--PNIVKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ +G+ H+ V+ ++KP NLL++ G ++D+GLA P R +
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTY 163
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
T+ Y APE K ++ A+ D WS GC EM T + G
Sbjct: 164 XHEVVTLW---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPG 209
Query: 370 LSA-EEIYR 377
S ++++R
Sbjct: 210 DSEIDQLFR 218
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 8 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 60
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 61 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 119
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 120 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 165
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 166 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 211
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 212 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 254
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 35/218 (16%)
Query: 216 LGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L LVM+ G ++ +QR+ RL ++L Y + I +G+ L + V ++ N+L+
Sbjct: 85 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV 144
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
++ ++D+GLA +L E S I + APE+ S
Sbjct: 145 ESEAHVKIADFGLAKLLPLDKDXXVVREPGQSPIF-----------WYAPESL-----SD 188
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
N+F S +SD WSFG L E+ T SA E R + R +P +
Sbjct: 189 NIF-------SRQSDVWSFGVVLYELFTYCDKSCSPSA-EFLRMMGCERDVPALCRLLEL 240
Query: 395 V----------GIPRELWKMIGECLQFKASKRPTFSAM 422
+ P E+ +++ C RP+FSA+
Sbjct: 241 LEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSAL 278
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 37/219 (16%)
Query: 216 LGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLL 274
L LVM+ G ++ +QR+ RL ++L Y + I +G+ L + V ++ N+L+
Sbjct: 89 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV 148
Query: 275 DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAW-EPVKKS 333
++ ++D+GLA +L D ++ +P W P S
Sbjct: 149 ESEAHVKIADFGLAKLLPLDK-----------------DYYVVREPGQSPIFWYAPESLS 191
Query: 334 LNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIV 393
N+F S +SD WSFG L E+ T SA E R + R +P +
Sbjct: 192 DNIF-------SRQSDVWSFGVVLYELFTYCDKSCSPSA-EFLRMMGCERDVPALCRLLE 243
Query: 394 GV----------GIPRELWKMIGECLQFKASKRPTFSAM 422
+ P E+ +++ C RP+FSA+
Sbjct: 244 LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSAL 282
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ +L + + +A+G+ L + + ++ N+LL A + D+GLA +
Sbjct: 160 EEQLSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN- 218
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
DS+ I + N P W + + + + +SD WS+G
Sbjct: 219 ---------DSNYI--------VKGNARLPVKWMAPESIFDCVY------TVQSDVWSYG 255
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQF 411
L E+ + G P+ G+ + +VK+ + P +A P+ ++ ++ C
Sbjct: 256 ILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFA-------PKNIYSIMQACWAL 308
Query: 412 KASKRPTFSAMLATFLRHLQE 432
+ + RPTF + + QE
Sbjct: 309 EPTHRPTFQQICSFLQEQAQE 329
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 118/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 10 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 62
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 63 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 121
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + P+ R+ + +
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSC--HAPSSRR-----------TTLS 168
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
T+ +Y PE E D+ + D WS G E G P+ + +
Sbjct: 169 GTL---DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 213
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 214 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 256
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+KK+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R + T+
Sbjct: 120 HSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPV-----------RTYXHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 235 EGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKP 294
E +L+ + ++ +ARG+ L + + ++ N+L+ ++D+GLA
Sbjct: 185 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA------ 238
Query: 295 ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFG 354
IH +D + N P W + + + + +SD WSFG
Sbjct: 239 -----------RDIHH-IDYYKKTTNGRLPVKWMAPEALFDRIY------THQSDVWSFG 280
Query: 355 CTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFK 412
L E+ T G P+ G+ EE+++ + + ++ P + EL+ M+ +C
Sbjct: 281 VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT-------NELYMMMRDCWHAV 333
Query: 413 ASKRPTFSAMLATFLR 428
S+RPTF ++ R
Sbjct: 334 PSQRPTFKQLVEDLDR 349
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TXL 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 50/296 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ +G + + + +A+K V+ ++E + QL
Sbjct: 35 DFEIGRPLGKGK------FGNVYLAREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 87
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 88 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 146
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 192
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 193 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 238
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRH 429
E Y+ + + P + + +I L+ S+RP ML L H
Sbjct: 239 ETYKRISRVEFTFPDFVTEGARD-------LISRLLKHNPSQRP----MLREVLEH 283
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 112/290 (38%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 13 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 65
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 66 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 124
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 125 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 170
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 171 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 216
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + +I L+ S+RP +L
Sbjct: 217 ETYKRISRVEFTFPDF-------VTEGARDLISRLLKHNPSQRPMLREVL 259
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 271
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 272 ----PKLFPDSLFPADSEHNKLKASQARDL 297
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+ R LL GA P +D +H A+ A ++ ++ +L+ DVNI + +PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 766 LARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIA 798
G V L+ ++ ++ +GD A +A
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RTAL + + N E+ + +L G + ++++ +H A G + LL AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDF 836
+D+EG+ H+AA + +E+L+ H + V RNH G T D
Sbjct: 98 IEDNEGNLPLHLAAKEGHL--RVVEFLV---KHTASNVGHRNHKGDTACDL 143
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GFG + V G P+ R LLL GA+P+ D G +V+H A + D +LE
Sbjct: 36 GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+ I +++ PLHL ++ VV+ V+
Sbjct: 95 --DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G LHLA + G +VE +++++ NV + GD A G E V +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 567 RGANVISRLR 576
GA + L+
Sbjct: 159 NGAGGATNLQ 168
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 10 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 62
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 63 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 121
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+ D
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR--------------D 165
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+ +Y PE E D+ + D WS G E G P+ + +
Sbjct: 166 TLCGTLDYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 213
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 214 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 256
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTEL------------ 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 28 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIKEGSMSEDDFIE-EAEVMMKL 79
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 80 SH--PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 137
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 138 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 184
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 185 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 232
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
+ + +L P+ AS +++++ C + + RP FS + LR L E+
Sbjct: 233 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWKERPEDRPAFSRL----LRQLAEI 281
Query: 434 PRS 436
S
Sbjct: 282 AES 284
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 11 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIREGAMSEEDFIE-EAEVMMKL 62
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 63 SH--PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 120
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 121 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 167
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 168 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 215
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
+ + +L P+ AS +++++ C + + RP FS + LR L E+
Sbjct: 216 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWRERPEDRPAFSRL----LRQLAEI 264
Query: 434 PRS 436
S
Sbjct: 265 AES 267
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/290 (18%), Positives = 112/290 (38%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+ D
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR--------------D 167
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+ +Y PE E D+ + D WS G E G P+ + +
Sbjct: 168 DLCGTLDYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + +I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDFVT-------EGARDLISRLLKHNPSQRPMLREVL 258
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 138 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRA 197
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 198 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 232
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 233 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 285
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 286 QPEDRPNFAIIL 297
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRT------------TL 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRX------------XL 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 271
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 272 ----PKLFPDSLFPADSEHNKLKASQARDL 297
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 169
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 170 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 258
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 50/236 (21%)
Query: 153 EVWGAWIGGGQGRCRHSVAVKKVMI------------AEEMEP--DWLSGQLDNLRRASM 198
E+ G + RC H K+ + AEE++ + ++D LR+ S
Sbjct: 23 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS- 81
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRC-------YGSVQLAMQRNEGRLTLEQILRYGADIA 251
N+ ++ LV D Y + ++ + E R + +L
Sbjct: 82 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV----- 136
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
+ LH +V ++KP N+LLD ++D+G + L K R C
Sbjct: 137 --ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD--PGEKLRSVCG------- 185
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+P+Y APE ++ S+N D+ G E D WS G + + GS P+
Sbjct: 186 ------TPSYLAPEI---IECSMN---DNHPGYGKEVDMWSTGVIMYTLLAGSPPF 229
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 27/114 (23%)
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
A G+ LH + +IK +N+LLD + A +SD+GLA +K A +
Sbjct: 143 ANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFA-------------QT 189
Query: 311 CMDCTML-SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTG 363
M ++ + Y APEA I+P+SD +SFG L+E+ TG
Sbjct: 190 VMXXRIVGTTAYMAPEALRG-------------EITPKSDIYSFGVVLLEIITG 230
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA + +
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID---------------FGNEFKNIFG 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 50/296 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ +G + + + +A+K V+ ++E + QL
Sbjct: 26 DFEIGRPLGKGK------FGNVYLAREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 78
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 79 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 137
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 138 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 183
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 184 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 229
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRH 429
E Y+ + + P + + +I L+ S+RP ML L H
Sbjct: 230 ETYKRISRVEFTFPDFVTEGARD-------LISRLLKHNPSQRP----MLREVLEH 274
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 84 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 142
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 143 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 186
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 187 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 233
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 234 GCPREMYDLMNLCWTYDVENRPGFAAV 260
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 35/206 (16%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
LT Q+L IA G+V L + V ++ N L+ + + D+G++
Sbjct: 125 LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSR-------- 176
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
+ S+ + TML + PE+ K + ESD WS G L
Sbjct: 177 ----DVYSTDYYRVGGHTMLPIRWMPPESIMYRK------------FTTESDVWSLGVVL 220
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T G PW LS E+ + + R L P+E+++++ C Q + R
Sbjct: 221 WEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTC------PQEVYELMLGCWQREPHMR 274
Query: 417 PTFSAMLATFLRHLQELPRSPPASPD 442
+ LQ L ++ P D
Sbjct: 275 KNIKGIHTL----LQNLAKASPVYLD 296
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 152 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 211
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 212 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 246
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 247 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 299
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 300 QPEDRPNFAIIL 311
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 88 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 147 QHYAKISDFGLSKALR------ADENXYKAQTHG-----KWPVKWYAPECINYYK----- 190
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 191 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 237
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 238 GCPREMYDLMNLCWTYDVENRPGFAAV 264
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 25/113 (22%)
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
A G+ LH + +IK +N+LLD + A +SD+GLA A K RI
Sbjct: 137 ANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR-----ASEKFAQXVMXXRI-- 189
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTG 363
+ + Y APEA I+P+SD +SFG L+E+ TG
Sbjct: 190 -----VGTTAYMAPEALRG-------------EITPKSDIYSFGVVLLEIITG 224
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 88 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 147 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 190
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 191 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 237
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 238 GCPREMYDLMNLCWTYDVENRPGFAAV 264
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 152 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 211
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 212 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 246
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 247 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 299
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 300 QPEDRPNFAIIL 311
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 50/236 (21%)
Query: 153 EVWGAWIGGGQGRCRHSVAVKKVMI------------AEEMEP--DWLSGQLDNLRRASM 198
E+ G + RC H K+ + AEE++ + ++D LR+ S
Sbjct: 23 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS- 81
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRC-------YGSVQLAMQRNEGRLTLEQILRYGADIA 251
N+ ++ LV D Y + ++ + E R + +L
Sbjct: 82 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV----- 136
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
+ LH +V ++KP N+LLD ++D+G + L K R C
Sbjct: 137 --ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD--PGEKLREVCG------- 185
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+P+Y APE ++ S+N D+ G E D WS G + + GS P+
Sbjct: 186 ------TPSYLAPEI---IECSMN---DNHPGYGKEVDMWSTGVIMYTLLAGSPPF 229
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 8 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIREGAMSEEDFIE-EAEVMMKL 59
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 60 SH--PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 117
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 118 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 164
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 165 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 212
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
+ + +L P+ AS +++++ C + + RP FS + LR L E+
Sbjct: 213 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWKERPEDRPAFSRL----LRQLAEI 261
Query: 434 PRS 436
S
Sbjct: 262 AES 264
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 111/300 (37%), Gaps = 39/300 (13%)
Query: 142 KKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-RASMWC 200
K + R G +GA R VA+KK+ + + + + +R +
Sbjct: 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 74
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N + G + LVM+ C GS ++ ++ L +I +G+ LH+
Sbjct: 75 PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH 134
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K N+LL G + D+G A+I+ PA + + +P
Sbjct: 135 NMIHRDVKAGNILLSEPGLVKLGDFGSASIM-APA-----------------NXFVGTPY 176
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D + D WS G T +E+ P ++A +
Sbjct: 177 WMAPEV---------ILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIA 227
Query: 381 KNRKLPPQYASIVGVGIPRELWK-MIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPA 439
+N + + G E ++ + CLQ RPT + L+H L PP
Sbjct: 228 QNE------SPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL----LKHRFVLRERPPT 277
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 82 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 140
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 141 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 184
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 185 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 231
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 232 GCPREMYDLMNLCWTYDVENRPGFAAV 258
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 152
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 153 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 196
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 197 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 243
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 244 GCPREMYDLMNLCWTYDVENRPGFAAV 270
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 129 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 188
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 189 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 223
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 224 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 276
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 277 QPEDRPNFAIIL 288
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 138 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 197
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 198 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 232
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 233 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 285
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 286 QPEDRPNFAIIL 297
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 137 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 196
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 197 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 231
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 232 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 284
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 285 QPEDRPNFAIIL 296
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 104 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 162
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 163 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 206
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 207 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 253
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 254 GCPREMYDLMNLCWTYDVENRPGFAAV 280
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 104 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 162
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 163 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 206
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 207 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 253
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 254 GCPREMYDLMNLCWTYDVENRPGFAAV 280
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 137 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 196
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 197 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 231
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 232 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 284
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 285 QPEDRPNFAIIL 296
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 115/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 14 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 66
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 67 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 125
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 171
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 172 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 217
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + +I L+ S+RP +L
Sbjct: 218 ETYKRISRVEFTFPDF-------VTEGARDLISRLLKHNPSQRPMLREVL 260
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 152 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 211
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 212 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 246
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 247 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 299
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 300 QPEDRPNFAIIL 311
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 138 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 197
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 198 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 232
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 233 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 285
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 286 QPEDRPNFAIIL 297
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 6 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIREGAMSEEDFIE-EAEVMMKL 57
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 58 SH--PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 115
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 116 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 162
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 163 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 210
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
+ + +L P+ AS +++++ C + + RP FS + LR L E+
Sbjct: 211 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWKERPEDRPAFSRL----LRQLAEI 259
Query: 434 PRS 436
S
Sbjct: 260 AES 262
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
LVM+ G + +Q+N + + I+ ++ G+ L + V ++ N+LL
Sbjct: 102 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 160
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
A +SD+GL+ L+ A ++ H + APE K
Sbjct: 161 QHYAKISDFGLSKALR------ADENYYKAQTHG-----KWPVKWYAPECINYYK----- 204
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
S +SD WSFG + E + G P+ G+ E+ + K ++
Sbjct: 205 -------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG------CPA 251
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAM 422
G PRE++ ++ C + RP F+A+
Sbjct: 252 GCPREMYDLMNLCWTYDVENRPGFAAV 278
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 164 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 223
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 224 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 258
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 259 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 311
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 312 QPEDRPNFAIIL 323
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 144 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 203
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 204 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 238
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 239 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 291
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 292 QPEDRPNFAIIL 303
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 9 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIREGAMSEEDFIE-EAEVMMKL 60
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 61 SH--PKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 118
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 119 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 165
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 166 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 213
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQEL 433
+ + +L P+ AS +++++ C + + RP FS + LR L E+
Sbjct: 214 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWRERPEDRPAFSRL----LRQLAEI 262
Query: 434 PRS 436
S
Sbjct: 263 AES 265
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRX------------XL 169
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 170 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 258
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 11 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 63
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 64 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 122
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRX------------XL 168
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 169 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 214
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 215 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 257
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 154 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 213
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 214 SYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 248
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 249 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 301
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 302 QPEDRPNFAIIL 313
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+ K+ + E E P ++ L+ +
Sbjct: 8 VEKIGEG------TYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 62 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 168
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 169 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 214
Query: 377 R 377
R
Sbjct: 215 R 215
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
V+K+GEG +G VA+ K+ + E E P ++ L+ +
Sbjct: 7 VEKIGEG------TYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGR-LTLEQILRYGADIARGVVEL 257
N+ V+ ++ L LV + + ++ M + + L I Y + +G+
Sbjct: 61 --PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 258 HAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
H+ V+ ++KP NLL++ G ++D+GLA P R ++ T+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-----------RTYTHEVVTLW 167
Query: 318 SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA-EEIY 376
Y APE K ++ A+ D WS GC EM T + G S ++++
Sbjct: 168 ---YRAPEILLGCK-----YYSTAV------DIWSLGCIFAEMVTRRALFPGDSEIDQLF 213
Query: 377 R 377
R
Sbjct: 214 R 214
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ A
Sbjct: 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSA 526
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 527 TDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 566
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 567 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 615
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 616 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+ R LL GA P +D +H A+ A ++ ++ +L+ DVNI + +PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
Query: 766 LARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIA 798
G V L+ ++ ++ +GD A +A
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GFG + V G P+ R LLL GA+P+ D G +V+H A + D +LEN
Sbjct: 36 GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+ I +++ PLHL ++ VV+ V+
Sbjct: 95 --DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RTAL + + N E+ + +L G + ++++ +H A G + LL AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN 97
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDF 836
+D+EG+ H+AA + +E+L+ H + V RNH G T D
Sbjct: 98 IEDNEGNLPLHLAAKEGHL--RVVEFLV---KHTASNVGHRNHKGDTACDL 143
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G LHLA + G +VE +++++ NV + GD A G E V +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 567 RGANVISRLR 576
GA + L+
Sbjct: 159 NGAGGATNLQ 168
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRT------------TL 169
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 170 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 258
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 242 QILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARP 301
Q +++ D+ARG+ LH + P + L + R+V+ D + A R
Sbjct: 112 QAVKFALDMARGMAFLHTLEPLI----PRHAL---NSRSVMIDEDMTA----------RI 154
Query: 302 ECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMC 361
+ M +P + APEA + + N +D WSF L E+
Sbjct: 155 SMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTN---------RRSADMWSFAVLLWELV 205
Query: 362 TGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSA 421
T +P+A LS EI V P + GI + K++ C+ +KRP F
Sbjct: 206 TREVPFADLSNMEIGMKVALEGLRP-----TIPPGISPHVSKLMKICMNEDPAKRPKFD- 259
Query: 422 MLATFLRHLQE 432
M+ L +Q+
Sbjct: 260 MIVPILEKMQD 270
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 14 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 66
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 67 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 125
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDL------------ 171
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 172 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 217
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 218 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 260
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDL------------ 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 117/296 (39%), Gaps = 50/296 (16%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ +G + + + +A+K V+ ++E + QL
Sbjct: 35 DFEIGRPLGKGK------FGNVYLAREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 87
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 88 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 146
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+ D
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR--------------D 190
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+ +Y PE E D+ + D WS G E G P+ + +
Sbjct: 191 DLCGTLDYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 238
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRH 429
E Y+ + + P + + +I L+ S+RP ML L H
Sbjct: 239 ETYKRISRVEFTFPDFVTEGARD-------LISRLLKHNPSQRP----MLREVLEH 283
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 50/236 (21%)
Query: 153 EVWGAWIGGGQGRCRHSVAVKKVMI------------AEEMEP--DWLSGQLDNLRRASM 198
E+ G + RC H K+ + AEE++ + ++D LR+ S
Sbjct: 10 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS- 68
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRC-------YGSVQLAMQRNEGRLTLEQILRYGADIA 251
N+ ++ LV D Y + ++ + E R + +L
Sbjct: 69 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV----- 123
Query: 252 RGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSC 311
+ LH +V ++KP N+LLD ++D+G + L K R C
Sbjct: 124 --ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD--PGEKLREVCG------- 172
Query: 312 MDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+P+Y APE ++ S+N D+ G E D WS G + + GS P+
Sbjct: 173 ------TPSYLAPEI---IECSMN---DNHPGYGKEVDMWSTGVIMYTLLAGSPPF 216
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 111/300 (37%), Gaps = 39/300 (13%)
Query: 142 KKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLR-RASMWC 200
K + R G +GA R VA+KK+ + + + + +R +
Sbjct: 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 113
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N + G + LVM+ C GS ++ ++ L +I +G+ LH+
Sbjct: 114 PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH 173
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K N+LL G + D+G A+I+ PA + + +P
Sbjct: 174 NMIHRDVKAGNILLSEPGLVKLGDFGSASIM-APA-----------------NXFVGTPY 215
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + D + D WS G T +E+ P ++A +
Sbjct: 216 WMAPEV---------ILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIA 266
Query: 381 KNRKLPPQYASIVGVGIPRELWK-MIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPA 439
+N + + G E ++ + CLQ RPT + L+H L PP
Sbjct: 267 QNE------SPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL----LKHRFVLRERPPT 316
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ A
Sbjct: 87 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSA 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 147 TDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 186
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 187 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 235
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 236 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 272
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L+ +L + + +A+G+ L + + ++ N+LL A + D+GLA +
Sbjct: 161 LSTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN---- 216
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
DS+ I + N P W + + + + +SD WS+G L
Sbjct: 217 ------DSNYI--------VKGNARLPVKWMAPESIFDCVY------TVQSDVWSYGILL 256
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKAS 414
E+ + G P+ G+ + +VK+ + P +A P+ ++ ++ C + +
Sbjct: 257 WEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFA-------PKNIYSIMQACWALEPT 309
Query: 415 KRPTFSAMLATFLRHLQE 432
RPTF + + QE
Sbjct: 310 HRPTFQQICSFLQEQAQE 327
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 55/234 (23%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGS------------- 557
G T LH A + ++VE +L + + V + K+G P + A AGS
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 558 -PEC-------------------VHALIKRGANV---------ISRLREGFGPSVAHVCA 588
EC + L KRGANV RLR+G G + A
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAA 156
Query: 589 YHGQPDCMRELL-LAGADPNAVDDEGESVL-HRAVAKKYTDCAIV---ILENGGCRSMAI 643
G + ++ LL GAD NA D+ G + L H ++ +D + +L++G + +
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNV 214
Query: 644 LNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALK 697
+ TPL L V ++ +V+R +E +E + + D TAL +A LK
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLE----QEHIEINDTDSDGKTALLLAVELK 264
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 46/290 (15%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGD-PPLVFALAAGSPECVHALIKRGANVISRLR 576
A + +LV+ +LE NV+ +++G PL A+ + V L++ GA+ + R +
Sbjct: 12 AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 577 EGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENG 636
G P + + A G ++ L GAD N D G + A G
Sbjct: 71 NGATPFL--LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY------------G 116
Query: 637 GCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAAL 696
+++ L + NV + ++ E E + G A + A
Sbjct: 117 KVKALKFLYKRGA----------NVNLRRKTKE--DQERLRK--------GGATALMDAA 156
Query: 697 KKDHEVEGRELVRILL-TAGAEPTAQDAQNRTAL-H--IASMANDVE-LVKIILDAGVDV 751
+K H E+++ILL GA+ A D R AL H ++S +DVE + ++LD G DV
Sbjct: 157 EKGHV----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212
Query: 752 NIRNVHNTIPLHVALARGAKSCVGLLLSA-GADCNWQDDEGDNAFHIAAD 800
N+R PL +A+ + V LL + N D +G A +A +
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 694 AALKKDH------EVEGRELVRILLTAGAEPTAQDAQNR-TALHIASMANDVELVKIILD 746
AA++ +H + E +LV+ LL GA Q+ + T LH A + ++V+++L
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 747 AGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKM 804
G D +R + P +A G+ + L LS GAD N D G AF AA K+
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G+T L LA + LV+ +LE ++ D DG L+ A+ + L KRGA+
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 10 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 62
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 63 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 121
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDL------------ 167
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 168 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 213
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 214 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 256
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+ R LL GA P +D +H A+ A ++ ++ +L+ DVNI + +PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 766 LARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIA 798
G V L+ ++ ++ +GD A +A
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RTAL + + N E+ + +L G + ++++ +H A G + LL AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDF 836
+D+EG+ H+AA + +E+L+ H + V RNH G T D
Sbjct: 98 IEDNEGNLPLHLAAKEGHL--RVVEFLV---KHTASNVGHRNHKGDTACDL 143
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GFG + V G P+ R LLL GA+P+ D G +V+H A + D +LE
Sbjct: 36 GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+ I +++ PLHL ++ VV+ V+
Sbjct: 95 --DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G LHLA + G +VE +++++ NV + GD A G E V +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 567 RGANVISRLR 576
GA + L+
Sbjct: 159 NGAGGATNLQ 168
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVA 765
E+ R LL GA P +D +H A+ A ++ ++ +L+ DVNI + +PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 766 LARGAKSCVGLLLS-AGADCNWQDDEGDNAFHIA 798
G V L+ ++ ++ +GD A +A
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 726 RTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCN 785
RTAL + + N E+ + +L G + ++++ +H A G + LL AD N
Sbjct: 39 RTALQVMKLGNP-EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 786 WQDDEGDNAFHIAADAAKMIRENLEWLIVMLSHPDAAVEVRNHSGKTLRDF 836
+D+EG+ H+AA + +E+L+ H + V RNH G T D
Sbjct: 98 IEDNEGNLPLHLAAKEGHL--RVVEFLV---KHTASNVGHRNHKGDTACDL 143
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 578 GFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGG 637
GFG + V G P+ R LLL GA+P+ D G +V+H A + D +LE
Sbjct: 36 GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 638 CRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+ I +++ PLHL ++ VV+ V+
Sbjct: 95 --DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
++ +G LHLA + G +VE +++++ NV + GD A G E V +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 567 RGA 569
GA
Sbjct: 159 NGA 161
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 45/294 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D+ + KLG G+ V V G W + +VAVK + + ME + + ++
Sbjct: 33 DITMKHKLGGGQYGEVYV-GVW-----KKYSLTVAVK-TLKEDTMEVEEFLKEAAVMKEI 85
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQR-NEGRLTLEQILRYGADIARGV 254
N+ GV ++ +V + YG++ ++ N +T +L I+ +
Sbjct: 86 KH--PNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAM 143
Query: 255 VELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
L + ++ N L+ + V+D+GL+ ++ D+ H+
Sbjct: 144 EYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTG----------DTYTAHAGAKF 193
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAE 373
+ +TAPE+ + N F S +SD W+FG L E+ T G P+ G+
Sbjct: 194 PI---KWTAPESL-----AYNTF-------SIKSDVWAFGVLLWEIATYGMSPYPGIDLS 238
Query: 374 EIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATF 426
++Y + K ++ P+ G P ++++++ C ++ + RP+F+ F
Sbjct: 239 QVYDLLEKGYRMEQPE-------GCPPKVYELMRACWKWSPADRPSFAETHQAF 285
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA + +
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID---------------FGNEFKNIFG 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPAFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 9 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 62 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 120
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDL------------ 166
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 167 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 212
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 213 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 255
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 131 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 175
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 176 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 223
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 224 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 264
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 265 ----PKLFPDSLFPADSEHNKLKASQARDL 290
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 117/290 (40%), Gaps = 45/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
++ V+++G G+ V + G W+ + VA+K + E D++ + + + +
Sbjct: 8 ELTFVQEIGSGQFGLVHL-GYWLN------KDKVAIKTIREGAMSEEDFIE-EAEVMMKL 59
Query: 197 SMWCRNVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
S + +GV + + LV + +G + ++ G E +L D+ G+
Sbjct: 60 SH--PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 117
Query: 256 ELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
L A V+ ++ N L+ + VSD+G+ + ++ T
Sbjct: 118 YLEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-------------YTSSTGT 164
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEE 374
+ +PE + + S +SD WSFG + E+ + G IP+ S E
Sbjct: 165 KFPVKWASPEVFSFSR------------YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 212
Query: 375 IYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
+ + +L P+ AS +++++ C + + RP FS +L
Sbjct: 213 VVEDISTGFRLYKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLL 255
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 132 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 176
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 177 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 224
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 225 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 265
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 266 ----PKLFPDSLFPADSEHNKLKASQARDL 291
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 132 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 176
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 177 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 224
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 225 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 265
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 266 ----PKLFPDSLFPADSEHNKLKASQARDL 291
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 214 SCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLL 273
S + LV D +++ ++ N LT I Y +G+ LH ++ ++KP+NLL
Sbjct: 85 SNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLL 144
Query: 274 LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKS 333
LD +G ++D+GLA P + + H +++ Y APE
Sbjct: 145 LDENGVLKLADFGLAKSFGSP---------NRAYXHQ-----VVTRWYRAPEL------- 183
Query: 334 LNLFWDDAIGISPESDAWSFGCTLVEM 360
LF G+ D W+ GC L E+
Sbjct: 184 --LFGARMYGVG--VDMWAVGCILAEL 206
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 137 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 181
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 182 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 229
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 230 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 270
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 271 ----PKLFPDSLFPADSEHNKLKASQARDL 296
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 616 VLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEE 675
V RA++ + D + I ++ G T LH V+ N VV++ ++
Sbjct: 90 VTFRAMSARLLDYVVNIADSNGN-----------TALHYSVSHANFPVVQQLLDSG---- 134
Query: 676 IVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAEPTAQDAQNRTALHIASMA 735
V +D G + M AL + E V L G +TAL +A
Sbjct: 135 -VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH 193
Query: 736 NDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSA-GADCNWQDDEGDNA 794
V++VK +L DVN+++ + L A G K GLLL+ D + D +G A
Sbjct: 194 GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
Query: 795 FHIAADAAK 803
+A DA +
Sbjct: 254 LMVALDAGQ 262
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 507 QNADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIK 566
Q+ DG TAL AC G E+ +L ++ + D+DG L+ AL AG E L
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Query: 567 R 567
R
Sbjct: 272 R 272
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVF-ALAA----GSPECVH 562
+++G TALH + + +V+ +L+ VD ++ G P++ ALA E V
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 563 ALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVA 622
L + G N+ ++ + G + + HG+ D ++ LL AD N DD+G + L A
Sbjct: 168 QLFRLG-NINAKASQA-GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE 225
Query: 623 KKYTDCAIVILENGGC 638
+ + A ++L C
Sbjct: 226 HGHKEIAGLLLAVPSC 241
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 66/285 (23%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGS------------- 557
G T LH A + ++VE +L + + V + K+G P + A AGS
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 558 -PEC-------------------VHALIKRGANV---------ISRLREGFGPSVAHVCA 588
EC + L KRGANV RLR+G G + A
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAA 176
Query: 589 YHGQPDCMRELL-LAGADPNAVDDEGESVL-HRAVAKKYTDCAIV---ILENGGCRSMAI 643
G + ++ LL GAD NA D+ G + L H ++ +D + +L++G + +
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNV 234
Query: 644 LNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVE 703
+ TPL L V ++ +V+R +E +E + + D TAL +A LK
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLE----QEHIEINDTDSDGKTALLLAVELKL----- 285
Query: 704 GRELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAG 748
+++ +L GA D + A D LVK++L G
Sbjct: 286 -KKIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLSHG 324
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 46/290 (15%)
Query: 518 ACRRGSAELVEAILEYSQENVDVLDKDGD-PPLVFALAAGSPECVHALIKRGANVISRLR 576
A + +LV+ +LE NV+ +++G PL A+ + V L++ GA+ + R +
Sbjct: 32 AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 577 EGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENG 636
G P + + A G ++ L GAD N D G + + + A+ G
Sbjct: 91 NGATPFI--LAAIAGSVKLLKLFLSKGADVNECDFYGFTA--------FMEAAVY----G 136
Query: 637 GCRSMAILNSKELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAAL 696
+++ L + NV + ++ E E + G A + A
Sbjct: 137 KVKALKFLYKR----------GANVNLRRKTKE--DQERLRK--------GGATALMDAA 176
Query: 697 KKDHEVEGRELVRILL-TAGAEPTAQDAQNRTAL-H--IASMANDVE-LVKIILDAGVDV 751
+K H E+++ILL GA+ A D R AL H ++S +DVE + ++LD G DV
Sbjct: 177 EKGH----VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 232
Query: 752 NIRNVHNTIPLHVALARGAKSCVGLLLSA-GADCNWQDDEGDNAFHIAAD 800
N+R PL +A+ + V LL + N D +G A +A +
Sbjct: 233 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 282
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 129 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 188
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 189 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 223
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 224 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 276
Query: 416 RPTFSAMLATFLRHLQELPRSPPASPDTGFTKFSTSNETEPSP 458
RP+F ++++ ++ P + F +S N+ E +P
Sbjct: 277 RPSFLEIISSIKEEME------PGFREVSFY-YSEENKMENNP 312
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 31/217 (14%)
Query: 218 LVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDAS 277
LVMD S++ +L+L+ +L + V +H+ + +IKP N L+
Sbjct: 80 LVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLG 139
Query: 278 GRA---VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSL 334
RA + D+GLA + + + P ++ N T + V L
Sbjct: 140 RRANQVYIIDFGLAKKYRDTSTHQHIPYRENK-------------NLTGTARYASVNTHL 186
Query: 335 NLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA---EEIYRAVVKNRKLPPQYAS 391
I S D S G L+ GS+PW GL A ++ Y + + + S
Sbjct: 187 ------GIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVA----TS 236
Query: 392 IVGV--GIPRELWKMIGECLQFKASKRPTFSAMLATF 426
I + G P E C + +P +S + F
Sbjct: 237 IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLF 273
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 155 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 214
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 215 GYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 249
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 250 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 302
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 303 QPEDRPNFAIIL 314
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGR---AVVSDYGLAA-ILKK 293
L + +L DIA G L + +I N LL G A + D+G+A I +
Sbjct: 178 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA 237
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
RK C ML + PEA+ + I S ++D WSF
Sbjct: 238 GYYRKG-------------GCAMLPVKWMPPEAFM-----------EGIFTS-KTDTWSF 272
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQF 411
G L E+ + G +P+ S +E+ V ++ PP+ P +++++ +C Q
Sbjct: 273 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK-------NCPGPVYRIMTQCWQH 325
Query: 412 KASKRPTFSAML 423
+ RP F+ +L
Sbjct: 326 QPEDRPNFAIIL 337
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 139 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 183
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 184 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 231
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 232 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 272
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 273 ----PKLFPDSLFPADSEHNKLKASQARDL 298
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 271
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 272 ----PKLFPDSLFPADSEHNKLKASQARDL 297
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 21/174 (12%)
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
+N+ D+ LV ++ G LA + + + R D+A + LH
Sbjct: 71 KNILELIEFFEDDTRFYLVFEKLQGGSILAHIQKQKHFNEREASRVVRDVAAALDFLHTK 130
Query: 261 GVVCMNIKPSNLLLDASGRAV---VSDYGLAAILK-KPACRK-ARPECDSSRIHSCMDCT 315
G+ ++KP N+L ++ + + D+ L + +K +C PE +
Sbjct: 131 GIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITTPE---------LTTP 181
Query: 316 MLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
S Y APE E +F D A D WS G L M +G P+ G
Sbjct: 182 CGSAEYMAPEVVE-------VFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVG 228
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 271
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 272 ----PKLFPDSLFPADSEHNKLKASQARDL 297
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 36/184 (19%)
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRCYGS--VQLAMQRNEGRLTLEQILRYGADIARGVVEL 257
C V H V S + L+++ G L + ++ ++R I GV L
Sbjct: 88 CPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYL 147
Query: 258 HAAGVVCMNIKPSNLLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
H +V +++KP N+LL + G + D+G++ RK C+ I
Sbjct: 148 HQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMS--------RKIGHACELREI------ 193
Query: 315 TMLSPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
M +P Y APE ++P I+ +D W+ G + T + P+ G
Sbjct: 194 -MGTPEYLAPEILNYDP--------------ITTATDMWNIGIIAYMLLTHTSPFVGEDN 238
Query: 373 EEIY 376
+E Y
Sbjct: 239 QETY 242
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 116/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 14 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 66
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G V +Q+ + ++ Y ++A
Sbjct: 67 QSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL-SKFDEQRTATYITELANA 125
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRR------------TTL 171
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 172 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 217
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 218 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 260
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 139 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 183
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 184 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 231
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 232 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 272
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 273 ----PKLFPDSLFPADSEHNKLKASQARDL 298
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 234 NEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKK 293
+E LT+ ++ + I++G+ L +V ++ N+L+ + +SD+GL+ + +
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEMSLVHRDLAARNILVAEGRKMKISDFGLSRDVYE 202
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
R + RI P W ++ + + + +SD WSF
Sbjct: 203 EDSXVKRSQ---GRI---------------PVKWMAIESLFDHIY------TTQSDVWSF 238
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQF 411
G L E+ T G P+ G+ E ++ + ++ P S E+++++ +C +
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCS-------EEMYRLMLQCWKQ 291
Query: 412 KASKRPTFS 420
+ KRP F+
Sbjct: 292 EPDKRPVFA 300
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 176 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 220
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 221 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 268
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 269 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 309
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 310 ----PKLFPDSLFPADSEHNKLKASQARDL 335
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 54/305 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGA-WIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+K ++ LGEG V ++ G G VAVK + E P SG +++ L
Sbjct: 10 LKKIRDLGEGHFGKVSLYCYDPTNDGTGE---MVAVKA--LKEGCGPQLRSGWQREIEIL 64
Query: 194 RRASMWCRNVCTFHGVL--RMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADI 250
R +++ ++ + G + + + LVM+ GS++ + R+ + L Q+L + I
Sbjct: 65 R--TLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRH--CVGLAQLLLFAQQI 120
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE-CDSSRIH 309
G+ LHA + + N+LLD + D+GLA KA PE + R+
Sbjct: 121 CEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLA---------KAVPEGHEYYRVR 171
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
D + + APE + K SD WSFG TL E+ T +
Sbjct: 172 EDGDSPVF---WYAPECLKECK------------FYYASDVWSFGVTLYELLTYCD--SN 214
Query: 370 LSAEEIYRAVVKNRKLPPQYASIV-----GVGIPR------ELWKMIGECLQFKASKRPT 418
S + ++ + + + G +PR E++ ++ C + +AS RPT
Sbjct: 215 QSPHTKFTELIGHTQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKNCWETEASFRPT 274
Query: 419 FSAML 423
F ++
Sbjct: 275 FQNLV 279
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + KV+ ++E + QL
Sbjct: 12 DFEIGRPLGKGKFGNVYL-------AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 65 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 123
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++++G + + P+ R+
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRR------------TTL 169
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 170 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 215
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 216 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 258
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 87 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 147 NDCVKLGDFGLSRYMEDSTXXKASK-------------GKLPIKWMAPE-------SINF 186
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 187 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 235
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 236 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 272
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 84 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 143
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 144 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 183
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 184 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 232
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 233 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 269
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 90 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 149
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 150 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 189
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 190 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 238
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 239 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 275
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 526
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 527 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 566
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 567 -----RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 615
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 616 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 116/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 14 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 66
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G V +Q+ + ++ Y ++A
Sbjct: 67 QSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL-SKFDEQRTATYITELANA 125
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++D+G + + P+ R+ + +D
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRX-------XLXGTLD 176
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
Y PE E D+ + D WS G E G P+ + +
Sbjct: 177 -------YLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 217
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 218 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 260
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 724 QNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGAD 783
+ T LHIAS+ D+ V+ +L G D N+++ PLH A G V LLL A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 784 CNWQDDEGDNAFHIAADAAK 803
N + D+ H DAAK
Sbjct: 69 VNTTGYQNDSPLH---DAAK 85
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 708 VRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALA 767
V LL G++P +D T LH A +++V+++L VN N PLH A
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 768 RGAKSCVGLLLSAGADCN 785
G V LLLS GA N
Sbjct: 86 NGHVDIVKLLLSYGASRN 103
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N G+T LH+A +G VE +L+ + + +V D G PL A G + V L++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVD 610
A V + + P H A +G D ++ LL GA NAV+
Sbjct: 66 KALVNTTGYQNDSP--LHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 580 GPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCR 639
G ++ H+ + G + LL G+DPN D G + LH A + ++L++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---- 65
Query: 640 SMAILNS---KELTPLHLCVATWNVAVVKRWVEVASPEEIVNVIDI 682
A++N+ + +PLH +V +VK + + VN+ +
Sbjct: 66 -KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 54/305 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGA-WIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG---QLDNL 193
+K ++ LGEG V ++ G G VAVK + E P SG +++ L
Sbjct: 11 LKKIRDLGEGHFGKVSLYCYDPTNDGTGE---MVAVKA--LKEGCGPQLRSGWQREIEIL 65
Query: 194 RRASMWCRNVCTFHGVL--RMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADI 250
R +++ ++ + G + + + LVM+ GS++ + R+ + L Q+L + I
Sbjct: 66 R--TLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRH--CVGLAQLLLFAQQI 121
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE-CDSSRIH 309
G+ LHA + + N+LLD + D+GLA KA PE + R+
Sbjct: 122 CEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLA---------KAVPEGHEYYRVR 172
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
D + + APE + K SD WSFG TL E+ T +
Sbjct: 173 EDGDSPVF---WYAPECLKECK------------FYYASDVWSFGVTLYELLTYCD--SN 215
Query: 370 LSAEEIYRAVVKNRKLPPQYASIV-----GVGIPR------ELWKMIGECLQFKASKRPT 418
S + ++ + + + G +PR E++ ++ C + +AS RPT
Sbjct: 216 QSPHTKFTELIGHTQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKNCWETEASFRPT 275
Query: 419 FSAML 423
F ++
Sbjct: 276 FQNLV 280
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 117/290 (40%), Gaps = 46/290 (15%)
Query: 137 DVKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRA 196
D ++ + LG+G+ V + + + + +A+K V+ ++E + QL
Sbjct: 11 DFEIGRPLGKGKFGNVYL------AREKQSKFILALK-VLFKAQLEKAGVEHQLRREVEI 63
Query: 197 SMWCR--NVCTFHGVLRMDSCLGLVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARG 253
R N+ +G + + L+++ G+V +Q+ + ++ Y ++A
Sbjct: 64 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANA 122
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMD 313
+ H+ V+ +IKP NLLL ++G ++++G + + P+ R+
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRT------------TL 168
Query: 314 CTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
C L +Y PE E D+ + D WS G E G P+ + +
Sbjct: 169 CGTL--DYLPPEMIE------GRMHDEKV------DLWSLGVLCYEFLVGKPPFEANTYQ 214
Query: 374 EIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
E Y+ + + P + + R+L I L+ S+RP +L
Sbjct: 215 ETYKRISRVEFTFPDFVTEGA----RDL---ISRLLKHNPSQRPMLREVL 257
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 151
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 152 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 191
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 192 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 240
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 241 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 87 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 147 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 186
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 187 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 235
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 236 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 272
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 234 NEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKK 293
+E LT+ ++ + I++G+ L +V ++ N+L+ + +SD+GL
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGL------ 196
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
SR D + P W ++ + + + +SD WSF
Sbjct: 197 ------------SRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIY------TTQSDVWSF 238
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQF 411
G L E+ T G P+ G+ E ++ + ++ P S E+++++ +C +
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCS-------EEMYRLMLQCWKQ 291
Query: 412 KASKRPTFS 420
+ KRP F+
Sbjct: 292 EPDKRPVFA 300
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 34/193 (17%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
+L + + +A+G+ L + + ++ N+LL A + D+GLA +
Sbjct: 166 LLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--------- 216
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
DS+ I + N P W + + + + +SD WS+G L E+ +
Sbjct: 217 -DSNYI--------VKGNARLPVKWMAPESIFDCVY------TVQSDVWSYGILLWEIFS 261
Query: 363 -GSIPWAGLSAEEIYRAVVKN--RKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
G P+ G+ + +VK+ + P +A P+ ++ ++ C + + RPTF
Sbjct: 262 LGLNPYPGILVNSKFYKLVKDGYQMAQPAFA-------PKNIYSIMQACWALEPTHRPTF 314
Query: 420 SAMLATFLRHLQE 432
+ + QE
Sbjct: 315 QQICSFLQEQAQE 327
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 87 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 146
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 147 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 186
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 187 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 235
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 236 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 272
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 89 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 148
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 149 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 188
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 189 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 237
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 238 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 274
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 234 NEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKK 293
+E LT+ ++ + I++G+ L +V ++ N+L+ + +SD+GL+ + +
Sbjct: 143 DERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYE 202
Query: 294 PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
R + RI P W ++ + + + +SD WSF
Sbjct: 203 EDSYVKRSQ---GRI---------------PVKWMAIESLFDHIY------TTQSDVWSF 238
Query: 354 GCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPRELWKMIGECLQF 411
G L E+ T G P+ G+ E ++ + ++ P S E+++++ +C +
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCS-------EEMYRLMLQCWKQ 291
Query: 412 KASKRPTFS 420
+ KRP F+
Sbjct: 292 EPDKRPVFA 300
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ + M
Sbjct: 136 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TASTNFMM 180
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + E+ GS+ + G
Sbjct: 181 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGELVKGSVIFQGTDH 228
Query: 373 EEIYRAVVKNRKLP 386
+ + V++ P
Sbjct: 229 IDQWNKVIEQLGTP 242
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 49/124 (39%), Gaps = 30/124 (24%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLL-LDASGRAV---VSDYGLAAILKKPACRKARPECDS 305
I + V LHA GVV ++KPSN+L +D SG + D+G A L+ P
Sbjct: 125 ITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTP---- 180
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
C + N+ APE E G D WS G L M TG
Sbjct: 181 -----CY-----TANFVAPEVLE------------RQGYDAACDIWSLGVLLYTMLTGYT 218
Query: 366 PWAG 369
P+A
Sbjct: 219 PFAN 222
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 218 LVMDRC-YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDA 276
++M+ C G ++ +Q + L L ++ Y ++ + L + V +I N+L+ +
Sbjct: 115 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 174
Query: 277 SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNL 336
+ + D+GL+ ++ KA L + APE S+N
Sbjct: 175 NDCVKLGDFGLSRYMEDSTYYKASK-------------GKLPIKWMAPE-------SINF 214
Query: 337 FWDDAIGISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGV 395
+ SD W FG + E+ G P+ G+ ++ + +LP +
Sbjct: 215 R-----RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP------MPP 263
Query: 396 GIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
P L+ ++ +C + S+RP F+ + A L+E
Sbjct: 264 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 300
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 176 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 220
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 221 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 268
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ + TF
Sbjct: 269 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRNYVENRPKYAGL--TF------ 309
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
P PD+ F S N+ + S A D+
Sbjct: 310 ----PKLFPDSLFPADSEHNKLKASQARDL 335
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A I G+ LH ++ ++KP N+LLD G +SD GLA LK +
Sbjct: 294 YTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-------- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
++ ++ +P + APE L +D ++ D ++ G TL EM
Sbjct: 346 TKGYAG------TPGFMAPELL------LGEEYDFSV------DYFALGVTLYEMIAARG 387
Query: 366 PWAGLSAEEIYRAVVKNRKL 385
P+ E++ +K R L
Sbjct: 388 PFRA-RGEKVENKELKQRVL 406
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A I G+ LH ++ ++KP N+LLD G +SD GLA LK +
Sbjct: 294 YTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-------- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
++ ++ +P + APE L +D ++ D ++ G TL EM
Sbjct: 346 TKGYAG------TPGFMAPELL------LGEEYDFSV------DYFALGVTLYEMIAARG 387
Query: 366 PWAGLSAEEIYRAVVKNRKL 385
P+ E++ +K R L
Sbjct: 388 PFRA-RGEKVENKELKQRVL 406
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A I G+ LH ++ ++KP N+LLD G +SD GLA LK +
Sbjct: 294 YTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-------- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
++ ++ +P + APE L +D ++ D ++ G TL EM
Sbjct: 346 TKGYAG------TPGFMAPELL------LGEEYDFSV------DYFALGVTLYEMIAARG 387
Query: 366 PWAGLSAEEIYRAVVKNRKL 385
P+ E++ +K R L
Sbjct: 388 PFRA-RGEKVENKELKQRVL 406
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 348 SDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIG 406
+D WSFG TL E+C+ G P + L ++ + +LP A+ EL +I
Sbjct: 199 TDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAA--------ELANLIN 250
Query: 407 ECLQFKASKRPTFSAML 423
C+ ++ RP+F A++
Sbjct: 251 NCMDYEPDHRPSFRAII 267
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 27/235 (11%)
Query: 582 SVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSM 641
S H A HG +R L+ G N + + S LH A + C ++L++G +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA--QV 118
Query: 642 AILNSKELTPL-HLCVA-TWN-VAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKK 698
+ + TPL + CV+ +W+ V ++ + PE D+ P+
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-----DLASPI------------ 161
Query: 699 DHEVEGR---ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRN 755
HE R E V L+ G + + T L++A VK +L++G DVN
Sbjct: 162 -HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220
Query: 756 VHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLE 810
++ PLH + ++ LL+ GAD ++ EG + + + + LE
Sbjct: 221 GQDS-PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLE 274
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 509 ADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRG 568
AD + LH AC G V+ +L++ + V+ + D PL A +GS +CV+ L++ G
Sbjct: 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 569 ANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDC 628
A+V E S H A G +C+ L+ G + + + L+ A + C
Sbjct: 149 ASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205
Query: 629 AIVILENGGCRSMAILNSKELTPLHLCVAT 658
+LE+G + + +PLH V T
Sbjct: 206 VKKLLESGADVNQG---KGQDSPLHAVVRT 232
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 538 VDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMR 597
V+++ D PL A G CV L+K GA V + P + + C G DC+
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP-LFNACVS-GSWDCVN 142
Query: 598 ELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVA 657
LL GA D S +H A + + +C ++ GG I S TPL+L
Sbjct: 143 LLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLACE 199
Query: 658 TWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAE 717
A VK+ +E + D+ G + A ++ E EL +L+ GA+
Sbjct: 200 NQQRACVKKLLESGA--------DVNQGKGQDSPLHAVVRTASE----ELACLLMDFGAD 247
Query: 718 PTAQDAQNR 726
A++A+ +
Sbjct: 248 TQAKNAEGK 256
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 48/241 (19%)
Query: 140 LVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMW 199
+VKK E + G+E +I Q R A ++ + EE+E ++ LR+ +
Sbjct: 27 IVKKCRE-KSTGLEYAAKFIKKRQSR-----ASRRGVSREEIE-----REVSILRQ--VL 73
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA 259
NV T H V + + L+++ G + L+ E+ + I GV LH
Sbjct: 74 HHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHT 133
Query: 260 AGVVCMNIKPSNLLLDASGRAV----VSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
+ ++KP N++L + + D+GLA ++ D +
Sbjct: 134 KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-----------DGVEFKNIFG-- 180
Query: 316 MLSPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +
Sbjct: 181 --TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQ 224
Query: 374 E 374
E
Sbjct: 225 E 225
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 48/241 (19%)
Query: 140 LVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMW 199
+VKK E + G+E +I Q R A ++ + EE+E ++ LR+ +
Sbjct: 27 IVKKCRE-KSTGLEYAAKFIKKRQSR-----ASRRGVSREEIE-----REVSILRQ--VL 73
Query: 200 CRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA 259
NV T H V + + L+++ G + L+ E+ + I GV LH
Sbjct: 74 HHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHT 133
Query: 260 AGVVCMNIKPSNLLLDASGRAV----VSDYGLAAILKKPACRKARPECDSSRIHSCMDCT 315
+ ++KP N++L + + D+GLA ++ D +
Sbjct: 134 KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-----------DGVEFKNIFG-- 180
Query: 316 MLSPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAE 373
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +
Sbjct: 181 --TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQ 224
Query: 374 E 374
E
Sbjct: 225 E 225
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 33/195 (16%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ +
Sbjct: 130 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIX------ 183
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
E D R +L + +PE+ + D + + SD WSFG L
Sbjct: 184 ---ETDXXRKGGK---GLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVLW 225
Query: 359 EMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T P+ GLS E++ R V++ L P P L++++ C Q+ R
Sbjct: 226 EIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKMR 278
Query: 417 PTFSAMLATFLRHLQ 431
P+F ++++ ++
Sbjct: 279 PSFLEIISSIKEEME 293
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y A I G+ LH ++ ++KP N+LLD G +SD GLA LK +
Sbjct: 294 YTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-------- 345
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
++ ++ +P + APE L +D ++ D ++ G TL EM
Sbjct: 346 TKGYAG------TPGFMAPELL------LGEEYDFSV------DYFALGVTLYEMIAARG 387
Query: 366 PWAGLSAEEIYRAVVKNRKL 385
P+ E++ +K R L
Sbjct: 388 PFRA-RGEKVENKELKQRVL 406
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 348 SDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIG 406
+D WSFG TL E+C+ G P + L ++ + +LP A+ EL +I
Sbjct: 199 TDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAA--------ELANLIN 250
Query: 407 ECLQFKASKRPTFSAML 423
C+ ++ RP+F A++
Sbjct: 251 NCMDYEPDHRPSFRAII 267
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ + ++LG+G G+ G G + VA+K V A M +++ L AS
Sbjct: 27 ITMSRELGQGS-FGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE-----RIEFLNEAS 80
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNE--GRLTLEQI 243
+ C +V GV+ ++M+ + Y S++ AM N +L ++
Sbjct: 81 VMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 140
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ +IA G+ L+A V ++ N ++ + D+G+ I + RK
Sbjct: 141 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG--- 197
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + +PE+ + D + + SD WSFG L E+ T
Sbjct: 198 ----------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVLWEIAT 235
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ R V++ L P P L++++ C Q+ RP+F
Sbjct: 236 LAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKMRPSFL 288
Query: 421 AMLATFLRHLQ 431
++++ ++
Sbjct: 289 EIISSIKEEME 299
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 37/167 (22%)
Query: 224 YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAV-V 282
Y LA +G L E + + RG+ +H+A V+ ++KP+NL ++ + +
Sbjct: 103 YMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKI 162
Query: 283 SDYGLAAILKKPACRKARPE-------CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLN 335
D+GLA I+ K S R+ +LSPN
Sbjct: 163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRL-------LLSPNN-------------- 201
Query: 336 LFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
+ AI D W+ GC EM TG +AG E + ++++
Sbjct: 202 --YTKAI------DMWAAGCIFAEMLTGKTLFAGAHELEQMQLILES 240
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 123 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 182
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 183 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 217
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 218 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 270
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 271 RPSFLEIISSIKEEME 286
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 27/134 (20%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA + AC + M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA----RTAC-----------TNFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G + D WS GC + E+ G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYAANVDIWSVGCIMGELVKGCVIFQGTDH 230
Query: 373 EEIYRAVVKNRKLP 386
+ + V++ P
Sbjct: 231 IDQWNKVIEQLGTP 244
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 130 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 189
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 190 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 224
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 225 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 277
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 278 RPSFLEIISSIKEEME 293
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 158 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 217
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 218 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 252
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 253 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 305
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 306 RPSFLEIISSIKEEME 321
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ + ++LG+G G+ G G + VA+K V A M +++ L AS
Sbjct: 17 ITMSRELGQGS-FGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE-----RIEFLNEAS 70
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNE--GRLTLEQI 243
+ C +V GV+ ++M+ + Y S++ AM N +L ++
Sbjct: 71 VMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 130
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ +IA G+ L+A V ++ N ++ + D+G+ I + RK
Sbjct: 131 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG--- 187
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + +PE+ + D + + SD WSFG L E+ T
Sbjct: 188 ----------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVLWEIAT 225
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ R V++ L P P L++++ C Q+ RP+F
Sbjct: 226 LAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKMRPSFL 278
Query: 421 AMLATFLRHLQ 431
++++ ++
Sbjct: 279 EIISSIKEEME 289
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 34/185 (18%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ + L L+M G +G T R + V LH G
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 262 VVCMNIKPSNLL---LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+V ++KP NLL LD + ++SD+GL+ ++ P S + +
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG--------------SVLSTACGT 181
Query: 319 PNYTAPE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
P Y APE A +P K++ D WS G + G P+ + +++
Sbjct: 182 PGYVAPEVLAQKPYSKAV--------------DCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 377 RAVVK 381
++K
Sbjct: 228 EQILK 232
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 129 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 188
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 189 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 223
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 224 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 276
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 277 RPSFLEIISSIKEEME 292
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ I + R
Sbjct: 127 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 186
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 187 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 221
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L++++ C Q+
Sbjct: 222 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKM 274
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 275 RPSFLEIISSIKEEME 290
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 138 VKLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRAS 197
+ + ++LG+G G+ G G + VA+K V A M +++ L AS
Sbjct: 27 ITMSRELGQGS-FGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE-----RIEFLNEAS 80
Query: 198 MW----CRNVCTFHGVLRMDSCLGLVMD-------RCY-GSVQLAMQRNE--GRLTLEQI 243
+ C +V GV+ ++M+ + Y S++ M+ N +L ++
Sbjct: 81 VMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKM 140
Query: 244 LRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACRKARPE 302
++ +IA G+ L+A V ++ N ++ + D+G+ I + RK
Sbjct: 141 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG--- 197
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+L + +PE+ + D + + SD WSFG L E+ T
Sbjct: 198 ----------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVLWEIAT 235
Query: 363 -GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKRPTFS 420
P+ GLS E++ R V++ L P P L++++ C Q+ RP+F
Sbjct: 236 LAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLFELMRMCWQYNPKMRPSFL 288
Query: 421 AMLATFLRHLQ 431
++++ ++
Sbjct: 289 EIISSIKEEME 299
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 34/205 (16%)
Query: 224 YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVS 283
YG + ++RN+ L + ++ Y I + + L + V +I N+L+ + +
Sbjct: 96 YGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLG 155
Query: 284 DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIG 343
D+GL+ ++ KA T L + +PE S+N
Sbjct: 156 DFGLSRYIEDEDYYKA-------------SVTRLPIKWMSPE-------SINFR-----R 190
Query: 344 ISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPREL 401
+ SD W F + E+ + G P+ L +++ + K +LP P P L
Sbjct: 191 FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLC-------PPVL 243
Query: 402 WKMIGECLQFKASKRPTFSAMLATF 426
+ ++ C + S RP F+ ++ +
Sbjct: 244 YTLMTRCWDYDPSDRPRFTELVCSL 268
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 46/248 (18%)
Query: 218 LVMDRCYGSVQLAMQRNEGR--LTLEQILRYGADIARGVVELHAAG--VVCMNIKPSNLL 273
L+ + C G + +++ E R L+ + +L+ R V +H ++ ++K NLL
Sbjct: 111 LLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLL 170
Query: 274 LDASGRAVVSDYGLAAILKK------PACRKARPECDSSRIHSCMDCTMLSPNYTAPEAW 327
L G + D+G A + A R+A E + +R +P Y PE
Sbjct: 171 LSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITR--------NTTPMYRTPEI- 221
Query: 328 EPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPP 387
++L+ + IG + D W+ GC L +C P+ + R V +PP
Sbjct: 222 ------IDLYSNFPIG--EKQDIWALGCILYLLCFRQHPFEDGAK---LRIVNGKYSIPP 270
Query: 388 ---QYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQELPRSPPASPDTG 444
QY +I LQ +R + +A + LQE+ + +P +
Sbjct: 271 HDTQYTV---------FHSLIRAMLQVNPEERLS----IAEVVHQLQEIAAARNVNPKSP 317
Query: 445 FTKFSTSN 452
T+ N
Sbjct: 318 ITELLEQN 325
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 34/205 (16%)
Query: 224 YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVS 283
YG + ++RN+ L + ++ Y I + + L + V +I N+L+ + +
Sbjct: 92 YGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLG 151
Query: 284 DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIG 343
D+GL+ ++ KA T L + +PE S+N
Sbjct: 152 DFGLSRYIEDEDYYKA-------------SVTRLPIKWMSPE-------SINFR-----R 186
Query: 344 ISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPREL 401
+ SD W F + E+ + G P+ L +++ + K +LP P P L
Sbjct: 187 FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLC-------PPVL 239
Query: 402 WKMIGECLQFKASKRPTFSAMLATF 426
+ ++ C + S RP F+ ++ +
Sbjct: 240 YTLMTRCWDYDPSDRPRFTELVCSL 264
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 34/185 (18%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ + L L+M G +G T R + V LH G
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 262 VVCMNIKPSNLL---LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+V ++KP NLL LD + ++SD+GL+ ++ P S + +
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG--------------SVLSTACGT 181
Query: 319 PNYTAPE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
P Y APE A +P K++ D WS G + G P+ + +++
Sbjct: 182 PGYVAPEVLAQKPYSKAV--------------DCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 377 RAVVK 381
++K
Sbjct: 228 EQILK 232
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 34/185 (18%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ + L L+M G +G T R + V LH G
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 262 VVCMNIKPSNLL---LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+V ++KP NLL LD + ++SD+GL+ ++ P S + +
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG--------------SVLSTACGT 181
Query: 319 PNYTAPE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
P Y APE A +P K++ D WS G + G P+ + +++
Sbjct: 182 PGYVAPEVLAQKPYSKAV--------------DCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 377 RAVVK 381
++K
Sbjct: 228 EQILK 232
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 49/210 (23%)
Query: 238 LTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACR 297
L + + +Y I G+ H+ ++ +IKP N+L+ SG + D+G A L P
Sbjct: 121 LDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG-- 178
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
D + + Y APE L D G + D W+ GC +
Sbjct: 179 ------------EVYDDEVATRWYRAPEL---------LVGDVKYGKA--VDVWAIGCLV 215
Query: 358 VEMCTGSIPWAGLS-AEEIYRAVVKNRKLPPQYASIV-------GVGIP----RE----- 400
EM G + G S +++Y ++ L P++ + GV +P RE
Sbjct: 216 TEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERR 275
Query: 401 -------LWKMIGECLQFKASKRPTFSAML 423
+ + +CL KRP + +L
Sbjct: 276 YPKLSEVVIDLAKKCLHIDPDKRPFCAELL 305
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GL C
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGL--------C 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 34/185 (18%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ + L L+M G +G T R + V LH G
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 262 VVCMNIKPSNLL---LDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+V ++KP NLL LD + ++SD+GL+ ++ P S + +
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG--------------SVLSTACGT 181
Query: 319 PNYTAPE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
P Y APE A +P K++ D WS G + G P+ + +++
Sbjct: 182 PGYVAPEVLAQKPYSKAV--------------DCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 377 RAVVK 381
++K
Sbjct: 228 EQILK 232
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 34/205 (16%)
Query: 224 YGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVS 283
YG + ++RN+ L + ++ Y I + + L + V +I N+L+ + +
Sbjct: 108 YGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLG 167
Query: 284 DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIG 343
D+GL+ ++ KA T L + +PE S+N
Sbjct: 168 DFGLSRYIEDEDYYKA-------------SVTRLPIKWMSPE-------SINFR-----R 202
Query: 344 ISPESDAWSFGCTLVEMCT-GSIPWAGLSAEEIYRAVVKNRKLP-PQYASIVGVGIPREL 401
+ SD W F + E+ + G P+ L +++ + K +LP P P L
Sbjct: 203 FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLC-------PPVL 255
Query: 402 WKMIGECLQFKASKRPTFSAMLATF 426
+ ++ C + S RP F+ ++ +
Sbjct: 256 YTLMTRCWDYDPSDRPRFTELVCSL 280
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
+ G LH +V ++KP NLLL++ R + D+GL+A + K R
Sbjct: 113 VLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEVGGKMKER------ 166
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
+ + Y APE L +D+ + D WS G L + G P
Sbjct: 167 ---------LGTAYYIAPEV-------LRKKYDE------KCDVWSCGVILYILLCGYPP 204
Query: 367 WAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKR 416
+ G + +EI + V K + PP + + E +++ L ++ SKR
Sbjct: 205 FGGQTDQEILKRVEKGKFSFDPPDWTQ-----VSDEAKQLVKLMLTYEPSKR 251
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 139 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 183
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 184 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 231
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 232 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 276
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 277 --------PDVLFPADSEHNKLKASQARDL 298
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D +A + A N+V LV +L+AG N+ + N PLH A V +LL +G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSG 85
Query: 782 ADCNWQDDEGDNAFHIAADAA 802
D + DD+G+ A + A D+
Sbjct: 86 LDDSQFDDKGNTALYYAVDSG 106
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 707 LVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
LV LL AGA +N LH A+ D ++VKI+L +G+D + + L+ A+
Sbjct: 46 LVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103
Query: 767 ARGAKSCVGLLLSAGADCNWQ 787
G V L + NW+
Sbjct: 104 DSGNXQTVKLFVKK----NWR 120
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 8 CSVCQTRYNEKERVPLLLQCGHGFCKECLSRMFSASTDTTLSCPRCRH 55
C CQ E P+ +C H CK+CL R F A SCP CRH
Sbjct: 81 CVCCQ----ELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRH 121
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
+L ++++ +IA G+ L+A V ++ N ++ + D+G+ +
Sbjct: 121 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIX------ 174
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
E D R +L + +PE+ + D + + SD WSFG L
Sbjct: 175 ---ETDXXRKGGK---GLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVLW 216
Query: 359 EMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASKR 416
E+ T P+ GLS E++ R V++ L P P L +++ C Q+ R
Sbjct: 217 EIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLLELMRMCWQYNPKMR 269
Query: 417 PTFSAMLATFLRHLQ 431
P+F ++++ ++
Sbjct: 270 PSFLEIISSIKEEME 284
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 275
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 --------PDVLFPADSEHNKLKASQARDL 297
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 60/247 (24%)
Query: 140 LVKKLGEGRRAGVEVWGAWIGGGQGR------CRHSVAVKKVMIAEEMEPDWLSGQLDNL 193
+VKK E + G+E +I Q R CR + + ++ + + P
Sbjct: 27 IVKKCRE-KSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHP---------- 75
Query: 194 RRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARG 253
N+ T H V + + L+++ G + L+ E+ + I G
Sbjct: 76 --------NIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDG 127
Query: 254 VVELHAAGVVCMNIKPSNLLLDASGRAV----VSDYGLAAILKKPACRKARPECDSSRIH 309
V LH + ++KP N++L + + D+GLA ++ D
Sbjct: 128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-----------DGVEFK 176
Query: 310 SCMDCTMLSPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ +P + APE +EP +G+ E+D WS G + +G+ P+
Sbjct: 177 NIFG----TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPF 218
Query: 368 AGLSAEE 374
G + +E
Sbjct: 219 LGDTKQE 225
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 692 MAAALKKDHEVEGR-ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVD 750
+ AL D +EG +LV+ ++ +P+ + + TALH A A E+VK ++ GV+
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 751 VNIRNVHNTIPLHVALARGAKSCVGLLLSAGA 782
VN + PLH A + L+ +GA
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 564 LIKRGANVISR-LREGFGP---SVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHR 619
L K G+ I+ +R F P ++ + G+ D ++ ++ DP+ +DEG + LH
Sbjct: 17 LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN 76
Query: 620 AVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
AV +T+ +++ G + A +S TPLH + NV V K VE
Sbjct: 77 AVCAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N +G TALH A G E+V+ ++++ NV+ D DG PL A + + + L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 568 GANVIS 573
GA V +
Sbjct: 126 GAAVFA 131
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDV 751
E+V+ L+ G A D+ T LH A+ N+V++ K ++++G V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
+S+ + +LV+ I+ D ++ N LH A+ G V L+ G + N D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 792 DNAFHIAA 799
H AA
Sbjct: 104 WTPLHCAA 111
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 27/235 (11%)
Query: 582 SVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSM 641
S H A HG +R L+ G N + + S LH A + C ++L++G +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA--QV 62
Query: 642 AILNSKELTPL-HLCVA-TWN-VAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKK 698
+ + TPL + CV+ +W+ V ++ + PE D+ P+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-----DLASPI------------ 105
Query: 699 DHEVEGR---ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRN 755
HE R E V L+ G + + T L++A VK +L++G DVN
Sbjct: 106 -HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 164
Query: 756 VHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEGDNAFHIAADAAKMIRENLE 810
++ PLH ++ LL+ GAD ++ EG + + + + LE
Sbjct: 165 GQDS-PLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLE 218
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
AD + LH AC G V+ +L++ + V+ + D PL A +GS +CV+ L++
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 568 GANVISRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTD 627
GA+V E S H A G +C+ L+ G + + + L+ A +
Sbjct: 92 GASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 148
Query: 628 CAIVILENGG 637
C +LE+G
Sbjct: 149 CVKKLLESGA 158
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 538 VDVLDKDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMR 597
V+++ D PL A G CV L+K GA V + P + + C G DC+
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP-LFNACVS-GSWDCVN 86
Query: 598 ELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVA 657
LL GA D S +H A + + +C ++ GG I S TPL+L
Sbjct: 87 LLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLACE 143
Query: 658 TWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELVRILLTAGAE 717
A VK+ +E + D+ G + A + E EL +L+ GA+
Sbjct: 144 NQQRACVKKLLESGA--------DVNQGKGQDSPLHAVARTASE----ELACLLMDFGAD 191
Query: 718 PTAQDAQNR 726
A++A+ +
Sbjct: 192 TQAKNAEGK 200
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 58/245 (23%)
Query: 142 KKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKV-----------------MIAEEMEPD 184
++L R G +G+ R R VAVKK+ + + ++ +
Sbjct: 28 QRLQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHLKHE 87
Query: 185 WLSGQLDNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQIL 244
+ G LD A+ ++ F V + + +G ++ S L+ + Q L
Sbjct: 88 NVIGLLDVFTPAT----SIEDFSEVYLVTTLMGADLNNIVKSQALSDEHV-------QFL 136
Query: 245 RYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECD 304
Y + RG+ +H+AG++ ++KPSN+ ++ + D+GLA R+A E
Sbjct: 137 VY--QLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLA--------RQADEE-- 184
Query: 305 SSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
M + + Y APE + L W + + D WS GC + E+ G
Sbjct: 185 -------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCIMAELLQGK 226
Query: 365 IPWAG 369
+ G
Sbjct: 227 ALFPG 231
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 695 ALKKDHEVEGR-ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNI 753
AL D +EG +LV+ ++ +P+ + + TALH A A E+VK ++ GV+VN
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 754 RNVHNTIPLHVALARGAKSCVGLLLSAGA 782
+ PLH A + L+ +GA
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 564 LIKRGANVISR-LREGFGP-SVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAV 621
L K G+ I+ +R F P ++ + G+ D ++ ++ DP+ +DEG + LH AV
Sbjct: 19 LRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV 78
Query: 622 AKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVATWNVAVVKRWVE 669
+T+ +++ G + A +S TPLH + NV V K VE
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 508 NADGQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKR 567
N +G TALH A G E+V+ ++++ NV+ D DG PL A + + + L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 568 GANVIS 573
GA V +
Sbjct: 126 GAAVFA 131
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 706 ELVRILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDV 751
E+V+ L+ G A D+ T LH A+ N+V++ K ++++G V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 732 ASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADCNWQDDEG 791
+S+ + +LV+ I+ D ++ N LH A+ G V L+ G + N D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 792 DNAFHIAA 799
H AA
Sbjct: 104 WTPLHCAA 111
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLL-LDASGRAV---VSDYGLAAILKKPACRKARPECDS 305
I + V LHA GVV ++KPSN+L +D SG + D+G A ++ R E
Sbjct: 125 ITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFA--------KQLRAE--- 173
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
+ + + N+ APE E G D WS G L TG
Sbjct: 174 ---NGLLXTPCYTANFVAPEVLE------------RQGYDAACDIWSLGVLLYTXLTGYT 218
Query: 366 PWAG 369
P+A
Sbjct: 219 PFAN 222
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 40/252 (15%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ H V LVM+ G + + + + + V +H G
Sbjct: 67 NIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVG 126
Query: 262 VVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
VV ++KP NLL + + D+G A LK P + + C +
Sbjct: 127 VVHRDLKPENLLFTDENDNLEIKIIDFGFAR-LKPPDNQPLKTPC-------------FT 172
Query: 319 PNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG-------LS 371
+Y APE + G D WS G L M +G +P+ S
Sbjct: 173 LHYAAPELL------------NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS 220
Query: 372 AEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM-LATFLRHL 430
A EI + + +K + + +E +I L +KR S + +L+
Sbjct: 221 AVEIMKKI---KKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDG 277
Query: 431 QELPRSPPASPD 442
+L +P +PD
Sbjct: 278 SQLSSNPLMTPD 289
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 564 LIKRGANVISRLREGFGPSV-AHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVA 622
L R ++ +R+ +G P + A A G + +L+ + AD NAVDD G+S LH A A
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGM---LEDLINSHADVNAVDDLGKSALHWAAA 57
Query: 623 KKYTDCAIVILENGGCRSMAILNSKELTPLHL 654
D A+V+L+NG + M N+KE TPL L
Sbjct: 58 VNNVDAAVVLLKNGANKDMQ--NNKEETPLFL 87
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 28/138 (20%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 183 TPEVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLP-PQY 389
+ + V++ P P++
Sbjct: 231 IDQWNKVIEQLGTPCPEF 248
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 140 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 184
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM G + + G
Sbjct: 185 VPFVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 232
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 233 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 277
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 278 --------PDVLFPADSEHNKLKASQARDL 299
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
+ G LH +V ++KP NLLL++ R + D+GL+A + K R
Sbjct: 130 VLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFEVGGKMKER------ 183
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
+ + Y APE L +D+ + D WS G L + G P
Sbjct: 184 ---------LGTAYYIAPEV-------LRKKYDE------KCDVWSCGVILYILLCGYPP 221
Query: 367 WAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKR 416
+ G + +EI + V K + PP + + E +++ L ++ SKR
Sbjct: 222 FGGQTDQEILKRVEKGKFSFDPPDWTQ-----VSDEAKQLVKLMLTYEPSKR 268
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 40/248 (16%)
Query: 165 RCRHS-----VAVKKVMIAEEMEPDWLSGQLDNLRRASMWCR-NVCTFHGVLRMDSCLGL 218
+CR+ VA+KK + +E+ +P L +R N+ V R L L
Sbjct: 21 KCRNRDTGQIVAIKKFLESED-DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHL 79
Query: 219 VMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASG 278
V + C +V + R + + + + V H + ++KP N+L+
Sbjct: 80 VFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHS 139
Query: 279 RAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFW 338
+ D+G A +L P+ D + + Y +PE L
Sbjct: 140 VIKLCDFGFARLLTGPS--------------DYYDDEVATRWYRSPEL---------LVG 176
Query: 339 DDAIGISPESDAWSFGCTLVEMCTGSIPWAGLS-AEEIYRAVVKNRKLPPQYASIV---- 393
D G P D W+ GC E+ +G W G S +++Y L P++ +
Sbjct: 177 DTQYG--PPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQ 234
Query: 394 ---GVGIP 398
GV IP
Sbjct: 235 YFSGVKIP 242
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+ +++ Y APE +G D WS GC + EM I + G
Sbjct: 183 EPEVVTRYYRAPEVIL------------GMGYKENVDLWSVGCIMGEMVCHKILFPGRDY 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 275
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 --------PDVLFPADSEHNKLKASQARDL 297
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 511 GQTALHLACRRGSAELVEAILEYSQENVDVLDKDGDPPLVFALAAGSPECVHALIKRGAN 570
G+TALH A + + +V+ ++ N D D+DG P+ A G E V LI++GA+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 571 V 571
V
Sbjct: 339 V 339
Score = 37.0 bits (84), Expect = 0.088, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 10/208 (4%)
Query: 597 RELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCV 656
+E + AGAD NA D + + L AV + + + G I N E + LH
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGA--DPTIYNKSERSALHQAA 207
Query: 657 ATWNVAVVKRWVEVASPEEIVNVIDIPGPVGTALCMAAALKKDHEVEGRELV-----RIL 711
A + + + + +D G TAL + A + +V +L+ ++
Sbjct: 208 ANRDFGXXVYXLNSTKLKGDIEELDRNG--XTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 712 LTAGAEPTAQDAQNRTALHIASMANDVELVKIIL-DAGVDVNIRNVHNTIPLHVALARGA 770
A ++ + RTALH A+ ++ +VK ++ + G + + ++ P+ +A G
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 771 KSCVGLLLSAGADCNWQDDEGDNAFHIA 798
V L+ GA D A +A
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLA 353
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 724 QNRTALH-IASMAND-------VELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVG 775
NRT LH IAS ++ V K + AG DVN + PL +A+ + V
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 776 LLLSAGADCNWQDDEGDNAFHIAA 799
L AGAD + +A H AA
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAA 207
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 243 ILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPE 302
ILR +I +G+ LH+ + +IK +N+LL G ++D+G+A L ++
Sbjct: 121 ILR---EILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKR---- 173
Query: 303 CDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCT 362
+ + +P + APE +K+S F ++D WS G T +E+
Sbjct: 174 ----------NXFVGTPFWMAPEV---IKQSAYDF---------KADIWSLGITAIELAK 211
Query: 363 GSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAM 422
G P + L + + KN PP + + + CL RPT +
Sbjct: 212 GEPPNSDLHPMRVLFLIPKNS--PPTLEG----QHSKPFKEFVEACLNKDPRFRPTAKEL 265
Query: 423 L 423
L
Sbjct: 266 L 266
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 242 QILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARP 301
Q L Y + RG+ +H+AG++ ++KPSN+ ++ + D+GLA R+A
Sbjct: 134 QFLVY--QLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLA--------RQADE 183
Query: 302 ECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMC 361
E M + + Y APE + L W + + D WS GC + E+
Sbjct: 184 E---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCIMAELL 223
Query: 362 TGSIPWAG 369
G + G
Sbjct: 224 QGKALFPG 231
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 101/289 (34%), Gaps = 47/289 (16%)
Query: 153 EVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVC---TFHGV 209
+V G + G C H +K + + ++D+ +AS VC + +
Sbjct: 16 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENM 75
Query: 210 LRMDSCLGLVMDRCYGSVQLA--MQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNI 267
CL ++M+ G + +R + T + DI + LH+ + ++
Sbjct: 76 HHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDV 135
Query: 268 KPSNLLLDASGRAVV---SDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAP 324
KP NLL + + V +D+G A + + +P Y AP
Sbjct: 136 KPENLLYTSKEKDAVLKLTDFGFA----------------KETTQNALQTPCYTPYYVAP 179
Query: 325 EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRK 384
E P K +D + D WS G + + G P+ + + I + + +
Sbjct: 180 EVLGPEK------YDKS------CDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR 227
Query: 385 LPPQYASIVGVGIPRELWKMIGE----CLQFKASKRPTFSAMLATFLRH 429
L QY G P W + E ++ PT + F+ H
Sbjct: 228 L-GQY------GFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 269
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 101/289 (34%), Gaps = 47/289 (16%)
Query: 153 EVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWCRNVC---TFHGV 209
+V G + G C H +K + + ++D+ +AS VC + +
Sbjct: 35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENM 94
Query: 210 LRMDSCLGLVMDRCYGSVQLA--MQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNI 267
CL ++M+ G + +R + T + DI + LH+ + ++
Sbjct: 95 HHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDV 154
Query: 268 KPSNLLLDASGRAVV---SDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAP 324
KP NLL + + V +D+G A + + +P Y AP
Sbjct: 155 KPENLLYTSKEKDAVLKLTDFGFA----------------KETTQNALQTPCYTPYYVAP 198
Query: 325 EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRK 384
E P K +D + D WS G + + G P+ + + I + + +
Sbjct: 199 EVLGPEK------YDKS------CDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR 246
Query: 385 LPPQYASIVGVGIPRELWKMIGE----CLQFKASKRPTFSAMLATFLRH 429
L QY G P W + E ++ PT + F+ H
Sbjct: 247 L-GQY------GFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 288
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + DYGLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 52/211 (24%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS G + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPR-ELWKMIGECLQFKASKRPTFSAMLATFLRHLQ 431
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 231 IDQWNKVIEQ------------LGTPSPEFMKKLQPTVRTYVENRPKYAGY--SFEKLF- 275
Query: 432 ELPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 276 ---------PDVLFPADSEHNKLKASQARDL 297
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T++ ++R RG+ LHA +V ++KP N+L+ + G ++D+GLA I
Sbjct: 113 TIKDLMR---QFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS------ 163
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
+D +++ Y APE L + + D WS GC
Sbjct: 164 ---------YQMALDPVVVTLWYRAPEVL------LQSTYATPV------DMWSVGCIFA 202
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
EM + G S + + LPP+ V +PR
Sbjct: 203 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPR 243
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 49/185 (26%)
Query: 224 YGSVQLAMQRNEGRLTLEQILR-----------YGADIARGVVE----LHAAGVVCMNIK 268
Y ++ + M+ EG LE+I+ Y A++ + ++ H+ VV ++K
Sbjct: 92 YHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLK 151
Query: 269 PSNLLL-DASGRAVVS--DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPE 325
P N+L D S + + D+GLA + K S HS + Y APE
Sbjct: 152 PENILFQDTSPHSPIKIIDFGLAELFK-------------SDEHSTNAAG--TALYMAPE 196
Query: 326 AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKL 385
++ ++ + D WS G + + TG +P+ G S EE+ +
Sbjct: 197 VFKR-------------DVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKE-- 241
Query: 386 PPQYA 390
P YA
Sbjct: 242 -PNYA 245
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 160 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 210
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 211 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 265
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 266 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320
Query: 425 TFLRHLQELPRSPPASPDTGFTKF 448
+Q P + A T K+
Sbjct: 321 HPYVQIQTHPVNQMAKGTTEEMKY 344
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 33/164 (20%)
Query: 212 MDSCLGLVMD-RCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPS 270
MD+ L MD R G+ ++ N + Q+L+ G+ H ++ ++KP
Sbjct: 85 MDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQ-------GLAFCHENKILHRDLKPQ 137
Query: 271 NLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPV 330
NLL++ G+ + D+GLA P + +++ Y AP+
Sbjct: 138 NLLINKRGQLKLGDFGLARAFGIPV--------------NTFSSEVVTLWYRAPDVLMGS 183
Query: 331 KKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+ S D WS GC L EM TG + G + EE
Sbjct: 184 RT-----------YSTSIDIWSCGCILAEMITGKPLFPGTNDEE 216
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLA-------- 178
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 179 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 218
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 219 MAELLTGRTLFPG 231
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ RG+ LH+ VV ++KP N+L+ +SG+ ++D+GLA I
Sbjct: 129 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS---------------FQ 173
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+ +++ Y APE ++ S + D WS GC EM + G
Sbjct: 174 MALTSVVVTLWYRAPEVL--LQSS----------YATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 370 LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELW--------------------KMIGECL 409
S + ++ LP + V +PR+ + ++ +CL
Sbjct: 222 SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCL 281
Query: 410 QFKASKR-PTFSAMLATFLRHLQ 431
F +KR +SA+ + + L+
Sbjct: 282 TFNPAKRISAYSALSHPYFQDLE 304
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 27/117 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+ +++ Y APE +G D WS GC + EM I + G
Sbjct: 183 EPEVVTRYYRAPEVIL------------GMGYKENVDIWSVGCIMGEMVCHKILFPG 227
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 35/178 (19%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++A + H+ V+ +IKP NLLL ++G ++D+G + + P+ R+
Sbjct: 118 YITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTL---- 171
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
C L +Y PE E D+ + D WS G E G
Sbjct: 172 --------CGTL--DYLPPEXIEGRXH------DEKV------DLWSLGVLCYEFLVGKP 209
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAML 423
P+ + +E Y+ + + P + + +I L+ S+RP +L
Sbjct: 210 PFEANTYQETYKRISRVEFTFPDF-------VTEGARDLISRLLKHNPSQRPXLREVL 260
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 28/112 (25%)
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH+ V+ NIK N+LL G ++D+G C + PE S R TM
Sbjct: 133 LHSNQVIHRNIKSDNILLGMDGSVKLTDFGF--------CAQITPE-QSKR------STM 177
Query: 317 L-SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ +P + APE + A G P+ D WS G +EM G P+
Sbjct: 178 VGTPYWMAPE----------VVTRKAYG--PKVDIWSLGIMAIEMIEGEPPY 217
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 160 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 210
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 211 V----VKDSQVGAVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 265
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 266 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320
Query: 425 TFLRHLQELPRSPPASPDTGFTKF 448
+Q P + A T K+
Sbjct: 321 HPYVQIQTHPVNQMAKGTTEEMKY 344
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 35/196 (17%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAA-ILKKPACR 297
+L ++++ +IA G+ L+A V ++ N + + D+G+ I + R
Sbjct: 123 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYR 182
Query: 298 KARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTL 357
K +L + +PE+ + D + + SD WSFG L
Sbjct: 183 KG-------------GKGLLPVRWMSPESLK-----------DGV-FTTYSDVWSFGVVL 217
Query: 358 VEMCT-GSIPWAGLSAEEIYRAVVKNRKL-PPQYASIVGVGIPRELWKMIGECLQFKASK 415
E+ T P+ GLS E++ R V++ L P P L +++ C Q+
Sbjct: 218 WEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD-------NCPDMLLELMRMCWQYNPKM 270
Query: 416 RPTFSAMLATFLRHLQ 431
RP+F ++++ ++
Sbjct: 271 RPSFLEIISSIKEEME 286
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ RG+ LH+ VV ++KP N+L+ +SG+ ++D+GLA I
Sbjct: 129 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS---------------FQ 173
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+ +++ Y APE ++ S + D WS GC EM + G
Sbjct: 174 MALTSVVVTLWYRAPEVL--LQSS----------YATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 370 LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELW--------------------KMIGECL 409
S + ++ LP + V +PR+ + ++ +CL
Sbjct: 222 SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCL 281
Query: 410 QFKASKR-PTFSAMLATFLRHLQ 431
F +KR +SA+ + + L+
Sbjct: 282 TFNPAKRISAYSALSHPYFQDLE 304
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLA-------- 174
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 175 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 214
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 215 MAELLTGRTLFPG 227
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 113 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 163
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 164 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 218
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 219 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273
Query: 425 TFLRHLQELPRSPPASPDTGFTKF 448
+Q P + A T K+
Sbjct: 274 HPYVQIQTHPVNQMAKGTTEEMKY 297
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 116 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 166
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 167 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 221
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 222 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 276
Query: 425 TFLRHLQELPRSPPASPDTGFTKF 448
+Q P + A T K+
Sbjct: 277 HPYVQIQTHPVNQMAKGTTEEMKY 300
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 112 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 162
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 163 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 217
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 218 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 272
Query: 425 TFLRHLQELPRSPPASPDTGFTKF 448
+Q P + A T K+
Sbjct: 273 HPYVQIQTHPVNQMAKGTTEEMKY 296
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 20/190 (10%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 160 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 210
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 211 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 265
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 266 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320
Query: 425 TFLRHLQELP 434
+Q P
Sbjct: 321 HPYVQIQTHP 330
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA-------- 177
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 178 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 217
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 218 MAELLTGRTLFPG 230
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 132 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA-------- 183
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 184 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 223
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 224 MAELLTGRTLFPG 236
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPE------ 192
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
A + D WS GC L E+ G + G S + ++K
Sbjct: 193 -----LIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE LN A+ + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPEIM------LN-----AMHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLA-------- 177
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 178 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 217
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 218 MAELLTGRTLFPG 230
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 20/190 (10%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+ S
Sbjct: 132 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPDTTS 182
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 183 V----VKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 237
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 238 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292
Query: 425 TFLRHLQELP 434
+Q P
Sbjct: 293 HPYVQIQTHP 302
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 143 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 187
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 188 TPYVVTRYYRAPEVIL------------GMGYKENVDLWSVGCIMGEMVCHKILFPGRDY 235
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 236 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 280
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 281 --------PDVLFPADSEHNKLKASQARDL 302
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 179
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R D M + + Y APE + L W + + D WS GC
Sbjct: 180 ---RHTADE------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 219
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 220 MAELLTGRTLFPG 232
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 34/185 (18%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ + + L LVM G +G T + + V LH G
Sbjct: 81 NIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMG 140
Query: 262 VVCMNIKPSNLLL---DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLS 318
+V ++KP NLL D + ++SD+GL+ + K M +
Sbjct: 141 IVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKG---------------DVMSTACGT 185
Query: 319 PNYTAPE--AWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIY 376
P Y APE A +P K++ D WS G + G P+ + +++
Sbjct: 186 PGYVAPEVLAQKPYSKAV--------------DCWSIGVIAYILLCGYPPFYDENDSKLF 231
Query: 377 RAVVK 381
++K
Sbjct: 232 EQILK 236
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 179
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R D M + + Y APE + L W + + D WS GC
Sbjct: 180 ---RHTADE------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 219
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 220 MAELLTGRTLFPG 232
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 179
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R D M + + Y APE + L W + + D WS GC
Sbjct: 180 ---RHTADE------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 219
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 220 MAELLTGRTLFPG 232
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 150 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 201
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 202 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNMTVDIWSVGCI 241
Query: 357 LVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVG 394
+ E+ TG + G + +++ PP AS++
Sbjct: 242 MAELLTGRTLFPGTDHINQLQQIMRLTGTPP--ASVIS 277
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 33/234 (14%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG-------QL--- 190
V K + + G +G + VA+KKV++ E E ++ QL
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADI 250
+N+ CR + + R + + LV D C + + + TL +I R +
Sbjct: 77 ENVVNLIEICRTKASPYN--RCKASIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 134
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
G+ +H ++ ++K +N+L+ G ++D+GLA + ++P +R+ +
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS--LAKNSQPNRYXNRVVT 192
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
Y PE L + G P D W GC + EM T S
Sbjct: 193 LW--------YRPPEL---------LLGERDYG--PPIDLWGAGCIMAEMWTRS 227
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%)
Query: 725 NRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADC 784
N T L A+ AN + + +L G +VN + PLH A G L L GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 785 NWQDDEGDNAFHIAADAAK 803
+D EG + IA + A
Sbjct: 295 GARDSEGRDPLTIAMETAN 313
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA D+ R LH A++ L + L G D+ R+ PL +A+
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 770 AKSCVGLL 777
V LL
Sbjct: 313 NADIVTLL 320
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 543 KDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLA 602
+D PL+ A AA S L++ GANV G GP H C+ L
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL--FLKR 290
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVIL 633
GAD A D EG L +A + + IV L
Sbjct: 291 GADLGARDSEGRDPL--TIAMETANADIVTL 319
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 599 LLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVAT 658
LL GA+ N D G LH A +T A + L+ G + +S+ PL + + T
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMET 311
Query: 659 WNVAVV 664
N +V
Sbjct: 312 ANADIV 317
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 50/210 (23%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 132 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR---------------TAGTSFMM 176
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS GC + EM I + G
Sbjct: 177 TPYVVTRYYRAPEVIL------------GMGYKENVDLWSVGCIMGEMVCHKILFPGRDY 224
Query: 373 EEIYRAVVKNRKLPPQYASIVGVGIPRELWKMIGECLQFKASKRPTFSAMLATFLRHLQE 432
+ + V++ +G P E K + ++ RP ++ +F +
Sbjct: 225 IDQWNKVIEQ----------LGTPCP-EFMKKLQPTVRTYVENRPKYAGY--SFEKLF-- 269
Query: 433 LPRSPPASPDTGFTKFSTSNETEPSPASDV 462
PD F S N+ + S A D+
Sbjct: 270 --------PDVLFPADSEHNKLKASQARDL 291
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%)
Query: 725 NRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADC 784
N T L A+ AN + + +L G +VN + PLH A G L L GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 785 NWQDDEGDNAFHIAADAAK 803
+D EG + IA + A
Sbjct: 295 GARDSEGRDPLTIAMETAN 313
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA D+ R LH A++ L + L G D+ R+ PL +A+
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 770 AKSCVGLL 777
V LL
Sbjct: 313 NADIVTLL 320
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 543 KDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLA 602
+D PL+ A AA S L++ GANV G GP H C+ L
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL--FLKR 290
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVIL 633
GAD A D EG L +A + + IV L
Sbjct: 291 GADLGARDSEGRDPL--TIAMETANADIVTL 319
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 599 LLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVAT 658
LL GA+ N D G LH A +T A + L+ G + +S+ PL + + T
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMET 311
Query: 659 WNVAVV 664
N +V
Sbjct: 312 ANADIV 317
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 178
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 179 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 218
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 219 MAELLTGRTLFPG 231
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 178
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 179 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 218
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 219 MAELLTGRTLFPG 231
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 242 QILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARP 301
Q L Y + RG+ +H+AG++ ++KPSN+ ++ + D+GLA R+A
Sbjct: 126 QFLVY--QLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLA--------RQADE 175
Query: 302 ECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMC 361
E M + + Y APE + L W + + D WS GC + E+
Sbjct: 176 E---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCIMAELL 215
Query: 362 TGSIPWAG 369
G + G
Sbjct: 216 QGKALFPG 223
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 257 LHAAGVVCMNIKPSNLLL--DASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
LH G+ +IKP N L + S + D+GL+ K ++ + M
Sbjct: 184 LHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKL----------NNGEYYGMTT 233
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +S P+ DAWS G L + G++P+ G++ +
Sbjct: 234 KAGTPYFVAPEVLNTTNESY----------GPKCDAWSAGVLLHLLLMGAVPFPGVNDAD 283
Query: 375 IYRAVVKNRKL 385
V+ N+KL
Sbjct: 284 TISQVL-NKKL 293
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%)
Query: 725 NRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAGADC 784
N T L A+ AN + + +L G +VN + PLH A G L L GAD
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 785 NWQDDEGDNAFHIAADAAK 803
+D EG + IA + A
Sbjct: 295 GARDSEGRDPLTIAMETAN 313
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 710 ILLTAGAEPTAQDAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARG 769
LL GA D+ R LH A++ L + L G D+ R+ PL +A+
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 770 AKSCVGLL 777
V LL
Sbjct: 313 NADIVTLL 320
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 543 KDGDPPLVFALAAGSPECVHALIKRGANVISRLREGFGPSVAHVCAYHGQPDCMRELLLA 602
+D PL+ A AA S L++ GANV G GP H C+ L
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL--FLKR 290
Query: 603 GADPNAVDDEGESVLHRAVAKKYTDCAIVIL 633
GAD A D EG L +A + + IV L
Sbjct: 291 GADLGARDSEGRDPL--TIAMETANADIVTL 319
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 599 LLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAILNSKELTPLHLCVAT 658
LL GA+ N D G LH A +T A + L+ G + +S+ PL + + T
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMET 311
Query: 659 WNVAVV 664
N +V
Sbjct: 312 ANADIV 317
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 28/134 (20%)
Query: 236 GRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPA 295
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 116 AKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA------- 168
Query: 296 CRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGC 355
R E M + + Y APE + L W + + D WS GC
Sbjct: 169 -RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGC 207
Query: 356 TLVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 208 IMAELLTGRTLFPG 221
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGXVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 33/234 (14%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSG-------QL--- 190
V K + + G +G + VA+KKV++ E E ++ QL
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 191 DNLRRASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADI 250
+N+ CR + + R + LV D C + + + TL +I R +
Sbjct: 77 ENVVNLIEICRTKASPYN--RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 134
Query: 251 ARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHS 310
G+ +H ++ ++K +N+L+ G ++D+GLA + ++P +R+ +
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS--LAKNSQPNRYXNRVVT 192
Query: 311 CMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
Y PE L + G P D W GC + EM T S
Sbjct: 193 LW--------YRPPEL---------LLGERDYG--PPIDLWGAGCIMAEMWTRS 227
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEME--PDWLSGQLDNLRRASM 198
+ KLGEG +G +VA+K++ + E E P ++ L+ +
Sbjct: 39 ITKLGEG------TYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLK--EL 90
Query: 199 WCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELH 258
RN+ V+ + L L+ + ++ M +N +++ I + + GV H
Sbjct: 91 QHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCH 149
Query: 259 AAGVVCMNIKPSNLLL---DASGRAV--VSDYGLAAILKKP 294
+ + ++KP NLLL DAS V + D+GLA P
Sbjct: 150 SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIP 190
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 95 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 154
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 155 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPEL----- 194
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 195 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 238
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 106 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 165
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 166 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI-----CSRY---YRAPEL----- 205
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 206 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 249
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 192
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 193 RHTDDE---------MXGXVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 232
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 233 MAELLTGRTLFPG 245
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 131 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 182
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 183 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 222
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 223 MAELLTGRTLFPG 235
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 140 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 191
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 192 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 231
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 232 MAELLTGRTLFPG 244
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 28/138 (20%)
Query: 253 GVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCM 312
G+ LH+AG++ ++KPSN+++ + + D+GLA ++ M
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR---------------TAGTSFMM 182
Query: 313 DCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSA 372
+++ Y APE +G D WS G + EM G + + G
Sbjct: 183 TPYVVTRYYRAPEVIL------------GMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230
Query: 373 EEIYRAVVKNRKLP-PQY 389
+ + V++ P P++
Sbjct: 231 IDQWNKVIEQLGTPSPEF 248
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 113 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 172
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 173 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI-----CSRY---YRAPEL----- 212
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 213 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 256
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 192
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 193 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 232
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 233 MAELLTGRTLFPG 245
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 102 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 161
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 162 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI-----CSRY---YRAPEL----- 201
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 202 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 245
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 98 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 157
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 158 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI--------CSRYYRAPEL----- 197
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 198 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 241
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 174
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 175 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 214
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 215 MAELLTGRTLFPG 227
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 40/176 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
++ G+ L V N+ N+LL A +SD+GL+ L D S
Sbjct: 445 VSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALG----------ADDS--- 491
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGI---SPESDAWSFGCTLVE-MCTGSI 365
YTA A K L + + I S SD WS+G T+ E + G
Sbjct: 492 ----------YYTARSAG---KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQK 538
Query: 366 PWAGLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
P+ + E+ + + +++ PP+ P EL+ ++ +C +K RP F
Sbjct: 539 PYKKMKGPEVMAFIEQGKRMECPPE--------CPPELYALMSDCWIYKWEDRPDF 586
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 168
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 169 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 208
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 209 MAELLTGRTLFPG 221
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 132 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 183
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 184 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 223
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 224 MAELLTGRTLFPG 236
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 174
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 175 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 214
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 215 MAELLTGRTLFPG 227
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 177
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 178 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 217
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 218 MAELLTGRTLFPG 230
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 120 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 171
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 172 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 211
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 212 MAELLTGRTLFPG 224
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 179
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 180 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 219
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 220 MAELLTGRTLFPG 232
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 177
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 178 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 217
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 218 MAELLTGRTLFPG 230
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 54/232 (23%)
Query: 585 HVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAIL 644
HV A GQ D +R L+ G P + G + LH A D A + G S+
Sbjct: 25 HVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW-- 82
Query: 645 NSKELTPLHLCVATWNVAVVKRWVEVAS-----PEEIVNVIDIP--GPVGTALCMAAALK 697
P+HL V +V VE A PE ++N D +G+ +
Sbjct: 83 --HGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQT 140
Query: 698 KDH-----EVEGRELVRILLTAGAEPTAQDA------------QNRTAL----------- 729
H E E ++IL+ GA PTA+D +NR AL
Sbjct: 141 ALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKS 200
Query: 730 ---------------HIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVAL 766
H A + N ++ ++ G+DVN + +T+PL++++
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSV 252
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 507 QNADGQTALHLACRRG---SAELVEAILE-----YSQENVDVLDKDGDPPLVFALAAGSP 558
QN G TALHLAC+ G +A+ + ++ E + Q+ + + LV AL G+
Sbjct: 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAK 108
Query: 559 E-------CVHALIKRGANVI-SRLREGFGPSVAHVCAYHGQP--DCMRELLLAGADPNA 608
E ++ +R N I S ++ G + H C G + ++ L+ GA P A
Sbjct: 109 ERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTA 168
Query: 609 VDDEGESVLHRA 620
D E+ L RA
Sbjct: 169 KDKADETPLXRA 180
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 722 DAQNRTALHIASMANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGAKSCVGLLLSAG 781
D +N +H+A+ + V+ +++ GV I+N LH+A G L S G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 782 -ADCNWQDDEGDNAFHIAADAAK 803
W G H+A A K
Sbjct: 77 EVHSLWH---GQKPIHLAVXANK 96
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 144 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 195
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 196 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 235
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 236 MAELLTGRTLFPG 248
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 107 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 166
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 167 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 206
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 207 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 250
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 140 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 191
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 192 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 231
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 232 MAELLTGRTLFPG 244
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 178
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 179 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 218
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 219 MAELLTGRTLFPG 231
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 222 RCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD-ASGRA 280
R Y ++ M +L + Q+LR A I H+ G+ +IKP NLLLD SG
Sbjct: 129 RHYAKLKQTMPMLLIKLYMYQLLRSLAYI-------HSIGICHRDIKPQNLLLDPPSGVL 181
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
+ D+G A IL E + S I C S Y APE +F
Sbjct: 182 KLIDFGSAKIL-------IAGEPNVSXI--C------SRYYRAPEL---------IFG-- 215
Query: 341 AIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
A + D WS GC + E+ G + G S + ++K
Sbjct: 216 ATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIK 256
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 184
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 185 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 224
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 225 MAELLTGRTLFPG 237
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 192
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 193 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 232
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 233 MAELLTGRTLFPG 245
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 168
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 169 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 208
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 209 MAELLTGRTLFPG 221
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 118 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 169
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 170 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 209
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 210 MAELLTGRTLFPG 222
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 184
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 185 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 224
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 225 MAELLTGRTLFPG 237
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 118 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 169
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 170 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 209
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 210 MAELLTGRTLFPG 222
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 184
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 185 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 224
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 225 MAELLTGRTLFPG 237
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 106 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 165
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 166 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI-----CSRY---YRAPEL----- 205
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 206 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 249
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 174
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 175 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 214
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 215 MAELLTGRTLFPG 227
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 119 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 170
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 171 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 210
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 211 MAELLTGRTLFPG 223
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 144 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 195
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 196 RHTDDE---------MXGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 235
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 236 MAELLTGRTLFPG 248
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 48/194 (24%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ RG+ LH+ VV ++KP N+L+ +SG+ ++D+GLA I
Sbjct: 129 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS---------------FQ 173
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAG 369
+ +++ Y APE ++ S + D WS GC EM + G
Sbjct: 174 MALTSVVVTLWYRAPEVL--LQSS----------YATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 370 LSAEEIYRAVVKNRKLPPQYASIVGVGIPRELWK--------------------MIGECL 409
S + ++ LP + V +PR+ + ++ +CL
Sbjct: 222 SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCL 281
Query: 410 QFKASKR-PTFSAM 422
F +KR +SA+
Sbjct: 282 TFNPAKRISAYSAL 295
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 35/235 (14%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWC 200
V K + + G +G + VA+KKV++ E E ++ + +
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-----------RLTLEQILRYGAD 249
NV + R + +RC GS+ L E + TL +I R
Sbjct: 77 ENVVNLIEICRTKAS---PYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 133
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ G+ +H ++ ++K +N+L+ G ++D+GLA + ++P +R+
Sbjct: 134 LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS--LAKNSQPNRYXNRVV 191
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+ Y PE L + G P D W GC + EM T S
Sbjct: 192 TLW--------YRPPEL---------LLGERDYG--PPIDLWGAGCIMAEMWTRS 227
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 153
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I S Y APE
Sbjct: 154 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI--------CSRYYRAPEL----- 193
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 194 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 128 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 187
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 188 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSXI-----CSRY---YRAPEL----- 227
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 228 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 271
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 35/235 (14%)
Query: 141 VKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRRASMWC 200
V K + + G +G + VA+KKV++ E E ++ + +
Sbjct: 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 75
Query: 201 RNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEG-----------RLTLEQILRYGAD 249
NV + R + +RC GS+ L E + TL +I R
Sbjct: 76 ENVVNLIEICRTKAS---PYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 132
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
+ G+ +H ++ ++K +N+L+ G ++D+GLA + ++P +R+
Sbjct: 133 LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS--LAKNSQPNRYXNRVV 190
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+ Y PE L + G P D W GC + EM T S
Sbjct: 191 TLW--------YRPPEL---------LLGERDYG--PPIDLWGAGCIMAEMWTRS 226
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 122 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 181
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 182 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 221
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 222 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 265
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 128 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 187
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 188 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 227
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 228 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 271
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ ++ L ++++ C G +V M E LT QI + LH
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN 154
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K N+L G ++D+G++A ++R D + +P
Sbjct: 155 KIIHRDLKAGNILFTLDGDIKLADFGVSA--------------KNTRTIQRRDSFIGTPY 200
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + S + +D ++D WS G TL+EM P L+ + +
Sbjct: 201 WMAPEVV-MCETSKDRPYD------YKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIA 253
Query: 381 KNRKLPPQYAS 391
K+ PP A
Sbjct: 254 KSE--PPTLAQ 262
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 130 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 189
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 190 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 229
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 230 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 273
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 173 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 232
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 233 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 272
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 273 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 316
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 132 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 191
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 192 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 231
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 232 ----IFG--ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 275
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MAGFVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MAGFVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 216 LGLVMDRCYGSV-QLAMQRNEGRLTLEQIL--RYGADIARGVVELHAAGVVCMNIKPSNL 272
L LV+D +V ++A + + TL I Y + R + +H+ G+ +IKP NL
Sbjct: 99 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 158
Query: 273 LLDASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
LLD + + D+G A L R E + S I C+ Y APE
Sbjct: 159 LLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYI-----CSRY---YRAPEL----- 198
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVK 381
+F A + D WS GC L E+ G + G S + ++K
Sbjct: 199 ----IF--GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 242
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D+GLA
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------- 168
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 169 RHTDDE---------MAGFVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 208
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 209 MAELLTGRTLFPG 221
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 34/187 (18%)
Query: 207 HGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA--AGVVC 264
H + R CL M Y L N ++L ++ + ++ L ++
Sbjct: 105 HFMFRNHLCLVFEM-LSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIH 163
Query: 265 MNIKPSNLLLDASGRAVVS--DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
++KP N+LL R+ + D+G + L RI+ + S Y
Sbjct: 164 CDLKPENILLCNPKRSAIKIVDFGSSCQL-------------GQRIYQXIQ----SRFYR 206
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
+PE L + +D AI D WS GC LVEM TG ++G + + +V+
Sbjct: 207 SPEVL------LGMPYDLAI------DMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEV 254
Query: 383 RKLPPQY 389
+PP +
Sbjct: 255 LGIPPAH 261
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ ++ L ++++ C G +V M E LT QI + LH
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN 154
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K N+L G ++D+G++A ++R D + +P
Sbjct: 155 KIIHRDLKAGNILFTLDGDIKLADFGVSA--------------KNTRXIQRRDSFIGTPY 200
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + S + +D ++D WS G TL+EM P L+ + +
Sbjct: 201 WMAPEVV-MCETSKDRPYD------YKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIA 253
Query: 381 KNRKLPPQYAS 391
K+ PP A
Sbjct: 254 KSE--PPTLAQ 262
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLL-LDASGRAV---VSDYGLAAILKKPACRKARPECDS 305
I + V LH+ GVV ++KPSN+L +D SG + D+G A L+ P
Sbjct: 130 IGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTP---- 185
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
C + N+ APE +K+ G D WS G L M G
Sbjct: 186 -----CY-----TANFVAPEV---LKRQ---------GYDEGCDIWSLGILLYTMLAGYT 223
Query: 366 PWAG 369
P+A
Sbjct: 224 PFAN 227
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 34/193 (17%)
Query: 241 EQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKAR 300
EQ L ARG+ LH ++ ++K N+LLD + ++D+G++ K
Sbjct: 139 EQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS---------KKG 189
Query: 301 PECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVE- 359
E D + + + T+ Y PE + +K L + +SD +SFG L E
Sbjct: 190 TELDQTHLXXVVKGTL---GYIDPEYF--IKGRL----------TEKSDVYSFGVVLFEV 234
Query: 360 MCTGSIPWAGLSAEEIYRA--VVKNRK-------LPPQYASIVGVGIPRELWKMIGECLQ 410
+C S L E + A V++ + P A + R+ +CL
Sbjct: 235 LCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLA 294
Query: 411 FKASKRPTFSAML 423
+ RP+ +L
Sbjct: 295 LSSEDRPSMGDVL 307
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 34/187 (18%)
Query: 207 HGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA--AGVVC 264
H + R CL M Y L N ++L ++ + ++ L ++
Sbjct: 124 HFMFRNHLCLVFEM-LSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIH 182
Query: 265 MNIKPSNLLLDASGRAVVS--DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
++KP N+LL R+ + D+G + L RI+ + S Y
Sbjct: 183 CDLKPENILLCNPKRSAIKIVDFGSSCQL-------------GQRIYQXIQ----SRFYR 225
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
+PE L + +D AI D WS GC LVEM TG ++G + + +V+
Sbjct: 226 SPEVL------LGMPYDLAI------DMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEV 273
Query: 383 RKLPPQY 389
+PP +
Sbjct: 274 LGIPPAH 280
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYG-SVQLAMQRNEGRLTLEQILRYGADIARGVVELHAA 260
N+ ++ L ++++ C G +V M E LT QI + LH
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN 154
Query: 261 GVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPN 320
++ ++K N+L G ++D+G++A ++R D + +P
Sbjct: 155 KIIHRDLKAGNILFTLDGDIKLADFGVSA--------------KNTRXIQRRDXFIGTPY 200
Query: 321 YTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVV 380
+ APE + S + +D ++D WS G TL+EM P L+ + +
Sbjct: 201 WMAPEVV-MCETSKDRPYD------YKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIA 253
Query: 381 KNRKLPPQYAS 391
K+ PP A
Sbjct: 254 KSE--PPTLAQ 262
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 34/173 (19%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIH 309
++ G+ L V ++ N+LL A +SD+GL+ L D S +
Sbjct: 119 VSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALG----------ADDS-YY 167
Query: 310 SCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVE-MCTGSIPWA 368
+ + APE K S SD WS+G T+ E + G P+
Sbjct: 168 TARSAGKWPLKWYAPECINFRK------------FSSRSDVWSYGVTMWEALSYGQKPYK 215
Query: 369 GLSAEEIYRAVVKNRKL--PPQYASIVGVGIPRELWKMIGECLQFKASKRPTF 419
+ E+ + + +++ PP+ P EL+ ++ +C +K RP F
Sbjct: 216 KMKGPEVMAFIEQGKRMECPPE--------CPPELYALMSDCWIYKWEDRPDF 260
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLL-LDASGRAV---VSDYGLAAILKKPACRKARPECDS 305
I + V LH+ GVV ++KPSN+L +D SG + D+G A ++ R E
Sbjct: 130 IGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFA--------KQLRAE--- 178
Query: 306 SRIHSCMDCTMLSPNYTAP-EAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+ +++P YTA A E +K+ G D WS G L M G
Sbjct: 179 -------NGLLMTPCYTANFVAPEVLKRQ---------GYDEGCDIWSLGILLYTMLAGY 222
Query: 365 IPWAG 369
P+A
Sbjct: 223 TPFAN 227
>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain
Length = 360
Score = 38.1 bits (87), Expect = 0.037, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 36/154 (23%)
Query: 228 QLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLD--------ASGR 279
++ + N +E I Y +I + + L + ++KP N+LLD + R
Sbjct: 124 EIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVR 183
Query: 280 AVVSDYGLAAILKKP--------ACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVK 331
V + K C + + S I++ Y APE
Sbjct: 184 RVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINT--------RQYRAPEV----- 230
Query: 332 KSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
LNL WD + SD WSFGC L E+ TGS+
Sbjct: 231 -ILNLGWDVS------SDMWSFGCVLAELYTGSL 257
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 74 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 133
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 134 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 178
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 179 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 223
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 74 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 133
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 134 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 178
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 179 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 223
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
NV T H V + + L+++ G + LT E+ + I GV LH+
Sbjct: 75 NVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ 134
Query: 262 VVCMNIKPSN-LLLDAS---GRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+GLA K + I
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA--------HKIDFGNEFKNIFG------- 179
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 180 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGDTKQE 224
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 28/112 (25%)
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH+ V+ +IK N+LL G ++D+G C + PE S R TM
Sbjct: 132 LHSNQVIHRDIKSDNILLGMDGSVKLTDFGF--------CAQITPE-QSKR------STM 176
Query: 317 L-SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+ +P + APE + A G P+ D WS G +EM G P+
Sbjct: 177 VGTPYWMAPE----------VVTRKAYG--PKVDIWSLGIMAIEMIEGEPPY 216
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 55/254 (21%)
Query: 139 KLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVM-------IAEEMEPDWLSGQLD 191
K+ K+GEG + V + A + G +A+K ++ IA E++ ++G D
Sbjct: 24 KIEDKIGEGTFSSVYLATAQLQVGP---EEKIALKHLIPTSHPIRIAAELQCLTVAGGQD 80
Query: 192 NLRRASMWCR---NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGA 248
N+ R +V L +S L ++ L+ +++ Y
Sbjct: 81 NVMGVKYCFRKNDHVVIAMPYLEHESFLDIL----------------NSLSFQEVREYML 124
Query: 249 DIARGVVELHAAGVVCMNIKPSNLLLDAS-GRAVVSDYGLAA--------ILKKPACRKA 299
++ + + +H G+V ++KPSN L + + + D+GLA +LK
Sbjct: 125 NLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQ 184
Query: 300 RPECDSSRIHSCMDCTML------SPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSF 353
+ C ++ C+ +P + APE D WS
Sbjct: 185 QERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAI-----------DMWSA 233
Query: 354 GCTLVEMCTGSIPW 367
G + + +G P+
Sbjct: 234 GVIFLSLLSGRYPF 247
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 38.1 bits (87), Expect = 0.045, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 31/137 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
I G+ LH +V +IKP N+LL+ + + D+GL++ K + R
Sbjct: 155 ILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDR------ 208
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
+ + Y APE +KK N + D WS G + + G P
Sbjct: 209 ---------LGTAYYIAPEV---LKKKYN----------EKCDVWSCGVIMYILLCGYPP 246
Query: 367 WAGLSAEEIYRAVVKNR 383
+ G + ++I + V K +
Sbjct: 247 FGGQNDQDIIKKVEKGK 263
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 34/187 (18%)
Query: 207 HGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHA--AGVVC 264
H + R CL M Y L N ++L ++ + ++ L ++
Sbjct: 124 HFMFRNHLCLVFEM-LSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIH 182
Query: 265 MNIKPSNLLLDASGRAVVS--DYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYT 322
++KP N+LL R + D+G + L RI+ + S Y
Sbjct: 183 CDLKPENILLCNPKRXAIKIVDFGSSCQL-------------GQRIYQXIQ----SRFYR 225
Query: 323 APEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKN 382
+PE L + +D AI D WS GC LVEM TG ++G + + +V+
Sbjct: 226 SPEVL------LGMPYDLAI------DMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEV 273
Query: 383 RKLPPQY 389
+PP +
Sbjct: 274 LGIPPAH 280
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 30/215 (13%)
Query: 196 ASMWCRNVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVV 255
A + + +G +R + + M+ G + + +G L ++ L Y G+
Sbjct: 140 AGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLE 199
Query: 256 ELHAAGVVCMNIKPSNLLLDASG-RAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDC 314
LH+ ++ ++K N+LL + G A + D+G A L+ K
Sbjct: 200 YLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDGLGK---------------- 243
Query: 315 TMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPES--DAWSFGCTLVEMCTGSIPWAGLSA 372
++L+ +Y ++ + +G S ++ D WS C ++ M G PW
Sbjct: 244 SLLTGDYIP-------GTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCHPWTQFFR 296
Query: 373 EEIYRAVVKN----RKLPPQYASIVGVGIPRELWK 403
+ + R++PP A + I L K
Sbjct: 297 GPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRK 331
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 37.7 bits (86), Expect = 0.053, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 246 YGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDS 305
Y ++ V +H G+V ++KP+N L+ G + D+G+A + +P+
Sbjct: 132 YWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA--------NQMQPD--- 179
Query: 306 SRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSI 365
D + + NY PEA + + S ISP+SD WS GC L M G
Sbjct: 180 -XXXVVKDSQVGTVNYMPPEAIKDMSSSRE-NGKSKSKISPKSDVWSLGCILYYMTYGKT 237
Query: 366 PWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIP-RELWKMIGECLQFKASKRPTFSAMLA 424
P+ ++I + K + I IP ++L ++ CL+ +R + +LA
Sbjct: 238 PF-----QQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292
Query: 425 TFLRHLQELP 434
+Q P
Sbjct: 293 HPYVQIQTHP 302
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 37.7 bits (86), Expect = 0.053, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 139 KLVKKLGEGRRAGVEVWGAWIGGGQGRCRHSVAVKKVMIAEEMEPDW------------L 186
+LVKKLG+G G+ VW + R VAVKK+ A + D L
Sbjct: 12 ELVKKLGKGAY-GI-VWKSI----DRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTEL 65
Query: 187 SGQLDNLRRASMWCRNVCTFHGVLRMDSC--LGLVMDRCYGSVQLAMQRNEGRLTLEQIL 244
SG N+ VLR D+ + LV D + ++ N +Q +
Sbjct: 66 SGH-----------ENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYV 114
Query: 245 RYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLA 288
Y + + + LH+ G++ ++KPSN+LL+A V+D+GL+
Sbjct: 115 VY--QLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS 156
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 37.7 bits (86), Expect = 0.057, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 262 VVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNY 321
++ ++KP N+LLD G ++D+ +AA+L + + + + Y
Sbjct: 136 IIHRDMKPDNILLDEHGHVHITDFNIAAMLPR---------------ETQITTMAGTKPY 180
Query: 322 TAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW---AGLSAEEI 375
APE + K + G S D WS G T E+ G P+ + S++EI
Sbjct: 181 MAPEMFSSRKGA---------GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEI 228
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T++ ++R RG+ LHA +V ++KP N+L+ + G ++D+GLA I
Sbjct: 121 TIKDLMR---QFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS------ 171
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
+ +++ Y APE L + + D WS GC
Sbjct: 172 ---------YQMALTPVVVTLWYRAPEVL------LQSTYATPV------DMWSVGCIFA 210
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
EM + G S + + LPP+ V +PR
Sbjct: 211 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPR 251
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 37.7 bits (86), Expect = 0.057, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 8 CSVCQTRYNEKERVPLLLQCGHGFCKECLSRMFSASTDTTLSCPRCRH 55
C CQ E P+ C H CK+CL R F A SCP CR+
Sbjct: 55 CICCQ----ELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRY 95
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 31/137 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
+ G+ +H +V ++KP NLLL++ + + D+GL+ + A +K + + ++
Sbjct: 158 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE--ASKKMKDKIGTA 215
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE L+ +D+ + D WS G L + +G P
Sbjct: 216 Y-------------YIAPEV-------LHGTYDE------KCDVWSTGVILYILLSGCPP 249
Query: 367 WAGLSAEEIYRAVVKNR 383
+ G + +I + V K +
Sbjct: 250 FNGANEYDILKKVEKGK 266
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 31/137 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
+ G+ +H +V ++KP NLLL++ + + D+GL+ + A +K + + ++
Sbjct: 135 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE--ASKKMKDKIGTA 192
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE L+ +D+ + D WS G L + +G P
Sbjct: 193 Y-------------YIAPEV-------LHGTYDE------KCDVWSTGVILYILLSGCPP 226
Query: 367 WAGLSAEEIYRAVVKNR 383
+ G + +I + V K +
Sbjct: 227 FNGANEYDILKKVEKGK 243
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 31/137 (22%)
Query: 250 IARGVVELHAAGVVCMNIKPSNLLLDASGRAV---VSDYGLAAILKKPACRKARPECDSS 306
+ G+ +H +V ++KP NLLL++ + + D+GL+ + A +K + + ++
Sbjct: 159 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE--ASKKMKDKIGTA 216
Query: 307 RIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIP 366
Y APE L+ +D+ + D WS G L + +G P
Sbjct: 217 Y-------------YIAPEV-------LHGTYDE------KCDVWSTGVILYILLSGCPP 250
Query: 367 WAGLSAEEIYRAVVKNR 383
+ G + +I + V K +
Sbjct: 251 FNGANEYDILKKVEKGK 267
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 36/203 (17%)
Query: 224 YGSVQLAMQRNEGRLTLE-QILRYGADIARGVVELHAAGVVCMN--IKPSNLLLDASGRA 280
YGS+ + + + Q +++ D ARG LH + + ++ +D A
Sbjct: 93 YGSLYNVLHEGTNFVVDQSQAVKFALDXARGXAFLHTLEPLIPRHALNSRSVXIDEDXTA 152
Query: 281 VVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDD 340
+S + + P +P + APEA + + N
Sbjct: 153 RISXADVKFSFQSPG-------------------RXYAPAWVAPEALQKKPEDTN----- 188
Query: 341 AIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPRE 400
+D WSF L E+ T +P+A LS EI V P + GI
Sbjct: 189 ----RRSADXWSFAVLLWELVTREVPFADLSNXEIGXKVALEGLRP-----TIPPGISPH 239
Query: 401 LWKMIGECLQFKASKRPTFSAML 423
+ K+ C +KRP F ++
Sbjct: 240 VSKLXKICXNEDPAKRPKFDXIV 262
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T++ ++R RG+ LHA +V ++KP N+L+ + G ++D+GLA I
Sbjct: 113 TIKDLMR---QFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS------ 163
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
+ +++ Y APE L + + D WS GC
Sbjct: 164 ---------YQMALAPVVVTLWYRAPEVL------LQSTYATPV------DMWSVGCIFA 202
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
EM + G S + + LPP+ V +PR
Sbjct: 203 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPR 243
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 26/111 (23%)
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH+ V+ +IK N+LL G ++D+G C + PE S +
Sbjct: 132 LHSNQVIHRDIKSDNILLGMDGSVKLTDFGF--------CAQITPE------QSKRSXMV 177
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+P + APE + A G P+ D WS G +EM G P+
Sbjct: 178 GTPYWMAPE----------VVTRKAYG--PKVDIWSLGIMAIEMIEGEPPY 216
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 26/111 (23%)
Query: 257 LHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTM 316
LH+ V+ +IK N+LL G ++D+G C + PE S +
Sbjct: 133 LHSNQVIHRDIKSDNILLGMDGSVKLTDFGF--------CAQITPE------QSKRSXMV 178
Query: 317 LSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPW 367
+P + APE + A G P+ D WS G +EM G P+
Sbjct: 179 GTPYWMAPE----------VVTRKAYG--PKVDIWSLGIMAIEMIEGEPPY 217
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 239 TLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRK 298
T++ ++R RG+ LHA +V ++KP N+L+ + G ++D+GLA I
Sbjct: 113 TIKDLMR---QFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS------ 163
Query: 299 ARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLV 358
+ +++ Y APE L + + D WS GC
Sbjct: 164 ---------YQMALFPVVVTLWYRAPEVL------LQSTYATPV------DMWSVGCIFA 202
Query: 359 EMCTGSIPWAGLSAEEIYRAVVKNRKLPPQYASIVGVGIPR 399
EM + G S + + LPP+ V +PR
Sbjct: 203 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPR 243
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 43/229 (18%)
Query: 155 WGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR-----ASMWCRNVCTFHGV 209
WG Q R A KK+ P + +D ++ S+ N+ +
Sbjct: 22 WGEVKIAVQKGTRIRRAAKKI-------PKYFVEDVDRFKQEIEIMKSLDHPNIIRLYET 74
Query: 210 LRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKP 269
++ + LVM+ C G ++ R D+ V H V ++KP
Sbjct: 75 FEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKP 134
Query: 270 SNLLL--DASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEA 326
N L D+ + + D+GLAA K P M + +P Y +P+
Sbjct: 135 ENFLFLTDSPDSPLKLIDFGLAARFK-PG--------------KMMRTKVGTPYYVSPQV 179
Query: 327 WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
E + PE D WS G + + G P++ + E+
Sbjct: 180 LEGL-------------YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEV 215
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 43/229 (18%)
Query: 155 WGAWIGGGQGRCRHSVAVKKVMIAEEMEPDWLSGQLDNLRR-----ASMWCRNVCTFHGV 209
WG Q R A KK+ P + +D ++ S+ N+ +
Sbjct: 39 WGEVKIAVQKGTRIRRAAKKI-------PKYFVEDVDRFKQEIEIMKSLDHPNIIRLYET 91
Query: 210 LRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAGVVCMNIKP 269
++ + LVM+ C G ++ R D+ V H V ++KP
Sbjct: 92 FEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKP 151
Query: 270 SNLLL--DASGRAV-VSDYGLAAILKKPACRKARPECDSSRIHSCMDCTMLSPNYTAPEA 326
N L D+ + + D+GLAA K P M + +P Y +P+
Sbjct: 152 ENFLFLTDSPDSPLKLIDFGLAARFK-PG--------------KMMRTKVGTPYYVSPQV 196
Query: 327 WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEEI 375
E + PE D WS G + + G P++ + E+
Sbjct: 197 LEGL-------------YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEV 232
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 237 RLTLEQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPAC 296
+LT + + I RG+ +H+A ++ ++KPSNL ++ + D GLA
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLA-------- 172
Query: 297 RKARPECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCT 356
R E M + + Y APE + L W + + D WS GC
Sbjct: 173 RHTDDE---------MTGYVATRWYRAPE--------IMLNW---MHYNQTVDIWSVGCI 212
Query: 357 LVEMCTGSIPWAG 369
+ E+ TG + G
Sbjct: 213 MAELLTGRTLFPG 225
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 28/117 (23%)
Query: 251 ARGVVELHA---AGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKARPECDSSR 307
ARG+ LH ++ ++K +N+LLD AVV D+GLA ++ +
Sbjct: 149 ARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM----------DYKDXH 198
Query: 308 IHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGS 364
+ + T+ + APE K S ++D + +G L+E+ TG
Sbjct: 199 VXXAVRGTI---GHIAPEYLSTGKS------------SEKTDVFGYGVMLLELITGQ 240
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 37.0 bits (84), Expect = 0.092, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ T H + + + L+++ G + LT ++ ++ I GV LH+
Sbjct: 69 NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKR 128
Query: 262 VVCMNIKPSN-LLLDA---SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+G+A K + I
Sbjct: 129 IAHFDLKPENIMLLDKNVPNPRIKLIDFGIA--------HKIEAGNEFKNIFG------- 173
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 174 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGETKQE 218
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 37.0 bits (84), Expect = 0.092, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ T H + + + L+++ G + LT ++ ++ I GV LH+
Sbjct: 90 NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKR 149
Query: 262 VVCMNIKPSN-LLLDA---SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+G+A K + I
Sbjct: 150 IAHFDLKPENIMLLDKNVPNPRIKLIDFGIA--------HKIEAGNEFKNIFG------- 194
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 195 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGETKQE 239
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 37.0 bits (84), Expect = 0.092, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 202 NVCTFHGVLRMDSCLGLVMDRCYGSVQLAMQRNEGRLTLEQILRYGADIARGVVELHAAG 261
N+ T H + + + L+++ G + LT ++ ++ I GV LH+
Sbjct: 76 NIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKR 135
Query: 262 VVCMNIKPSN-LLLDA---SGRAVVSDYGLAAILKKPACRKARPECDSSRIHSCMDCTML 317
+ ++KP N +LLD + R + D+G+A K + I
Sbjct: 136 IAHFDLKPENIMLLDKNVPNPRIKLIDFGIA--------HKIEAGNEFKNIFG------- 180
Query: 318 SPNYTAPEA--WEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEMCTGSIPWAGLSAEE 374
+P + APE +EP +G+ E+D WS G + +G+ P+ G + +E
Sbjct: 181 TPEFVAPEIVNYEP------------LGL--EADMWSIGVITYILLSGASPFLGETKQE 225
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 37.0 bits (84), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 26/129 (20%)
Query: 241 EQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKAR 300
+ I + I G+ LH AGVV ++ P N+LL + + D+ LA
Sbjct: 134 QHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLA----------RE 183
Query: 301 PECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEM 360
D+++ H Y APE K G + D WS GC + EM
Sbjct: 184 DTADANKTHYVTHRW-----YRAPELVMQFK-----------GFTKLVDMWSAGCVMAEM 227
Query: 361 CTGSIPWAG 369
+ G
Sbjct: 228 FNRKALFRG 236
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 26/129 (20%)
Query: 241 EQILRYGADIARGVVELHAAGVVCMNIKPSNLLLDASGRAVVSDYGLAAILKKPACRKAR 300
+ I + I G+ LH AGVV ++ P N+LL + + D+ LA
Sbjct: 134 QHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLA----------RE 183
Query: 301 PECDSSRIHSCMDCTMLSPNYTAPEAWEPVKKSLNLFWDDAIGISPESDAWSFGCTLVEM 360
D+++ H Y APE K G + D WS GC + EM
Sbjct: 184 DTADANKTHYVTHRW-----YRAPELVMQFK-----------GFTKLVDMWSAGCVMAEM 227
Query: 361 CTGSIPWAG 369
+ G
Sbjct: 228 FNRKALFRG 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,899,353
Number of Sequences: 62578
Number of extensions: 2139591
Number of successful extensions: 7784
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 5026
Number of HSP's gapped (non-prelim): 2005
length of query: 1630
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1518
effective length of database: 7,964,601
effective search space: 12090264318
effective search space used: 12090264318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)