Query 000344
Match_columns 1630
No_of_seqs 386 out of 1398
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 2E-128 4E-133 1147.4 30.6 463 333-866 2-465 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 3E-85 6.6E-90 798.9 21.2 772 535-1629 2-786 (806)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 6.4E-47 1.4E-51 449.8 18.9 287 1292-1617 100-400 (545)
4 cd02663 Peptidase_C19G A subfa 100.0 2.1E-41 4.6E-46 397.3 25.7 278 1302-1629 1-298 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 4.3E-41 9.3E-46 398.6 25.7 294 1301-1629 1-326 (328)
6 cd02657 Peptidase_C19A A subfa 100.0 1.2E-40 2.7E-45 390.9 26.7 285 1302-1629 1-303 (305)
7 cd02668 Peptidase_C19L A subfa 100.0 1.2E-40 2.7E-45 394.8 26.3 270 1302-1619 1-297 (324)
8 cd02661 Peptidase_C19E A subfa 100.0 1E-40 2.2E-45 389.7 24.4 287 1300-1629 1-302 (304)
9 cd02671 Peptidase_C19O A subfa 100.0 1.4E-40 3E-45 394.9 23.5 280 1291-1629 15-330 (332)
10 cd02664 Peptidase_C19H A subfa 100.0 1.1E-39 2.5E-44 387.2 24.2 266 1302-1629 1-325 (327)
11 cd02669 Peptidase_C19M A subfa 100.0 1.4E-39 3E-44 400.1 25.7 283 1298-1616 117-431 (440)
12 cd02667 Peptidase_C19K A subfa 100.0 1.1E-39 2.3E-44 379.2 20.4 237 1302-1629 1-277 (279)
13 cd02658 Peptidase_C19B A subfa 100.0 3.2E-39 6.9E-44 380.2 24.5 278 1302-1629 1-309 (311)
14 cd02659 peptidase_C19C A subfa 100.0 3.4E-38 7.3E-43 374.8 26.2 280 1300-1626 2-309 (334)
15 COG5560 UBP12 Ubiquitin C-term 100.0 7.8E-39 1.7E-43 378.5 10.0 302 1298-1615 263-811 (823)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 3E-35 6.5E-40 325.2 15.8 291 1297-1609 68-396 (415)
17 cd02662 Peptidase_C19F A subfa 100.0 9.8E-34 2.1E-38 322.5 20.1 208 1302-1629 1-238 (240)
18 PF00443 UCH: Ubiquitin carbox 100.0 1.6E-33 3.4E-38 319.3 21.0 251 1300-1629 1-268 (269)
19 cd02666 Peptidase_C19J A subfa 100.0 7.5E-33 1.6E-37 329.0 16.9 283 1300-1629 1-341 (343)
20 KOG1868 Ubiquitin C-terminal h 100.0 6E-32 1.3E-36 336.3 10.8 300 1294-1610 295-630 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 4.9E-31 1.1E-35 296.8 16.9 191 1393-1629 21-228 (230)
22 KOG0944 Ubiquitin-specific pro 100.0 5.1E-31 1.1E-35 315.8 16.2 308 1209-1563 219-547 (763)
23 COG5077 Ubiquitin carboxyl-ter 100.0 1.6E-30 3.4E-35 311.8 10.8 271 1296-1617 189-479 (1089)
24 cd02665 Peptidase_C19I A subfa 100.0 2.4E-29 5.3E-34 282.5 16.8 198 1393-1629 21-226 (228)
25 KOG1867 Ubiquitin-specific pro 100.0 3.1E-29 6.8E-34 307.6 16.9 296 1294-1617 155-474 (492)
26 cd02673 Peptidase_C19Q A subfa 100.0 8E-29 1.7E-33 282.6 17.7 206 1389-1629 28-243 (245)
27 cd02257 Peptidase_C19 Peptidas 100.0 2.7E-28 5.8E-33 272.2 19.6 215 1393-1629 21-253 (255)
28 KOG1866 Ubiquitin carboxyl-ter 100.0 1.2E-29 2.6E-34 304.8 9.1 281 1295-1621 90-408 (944)
29 COG5207 UBP14 Isopeptidase T [ 99.9 6.8E-27 1.5E-31 271.3 15.0 204 1299-1540 302-512 (749)
30 KOG1873 Ubiquitin-specific pro 99.9 5.5E-26 1.2E-30 274.8 10.8 134 1488-1629 677-873 (877)
31 PF13423 UCH_1: Ubiquitin carb 99.9 1.4E-24 2.9E-29 254.9 21.5 273 1301-1605 1-295 (295)
32 PF04781 DUF627: Protein of un 99.9 1.3E-25 2.8E-30 221.5 10.4 107 62-175 1-110 (111)
33 KOG1863 Ubiquitin carboxyl-ter 99.9 1.7E-25 3.7E-30 298.6 14.4 286 1292-1620 162-463 (1093)
34 cd02672 Peptidase_C19P A subfa 99.9 3.6E-25 7.9E-30 255.8 11.8 220 1299-1610 14-260 (268)
35 KOG1870 Ubiquitin C-terminal h 99.9 3.5E-24 7.6E-29 279.9 10.7 163 1293-1464 239-415 (842)
36 KOG4598 Putative ubiquitin-spe 99.9 1.9E-23 4.1E-28 248.2 4.5 254 1298-1620 85-421 (1203)
37 KOG1864 Ubiquitin-specific pro 99.9 1.5E-21 3.3E-26 243.5 15.8 302 1297-1621 229-563 (587)
38 KOG1871 Ubiquitin-specific pro 99.8 1.2E-20 2.5E-25 217.1 12.9 315 1297-1628 25-414 (420)
39 cd02670 Peptidase_C19N A subfa 99.8 3.3E-20 7.1E-25 210.6 12.4 102 1488-1609 79-220 (241)
40 KOG2026 Spindle pole body prot 99.8 4.7E-19 1E-23 202.9 17.3 278 1299-1610 133-425 (442)
41 KOG1872 Ubiquitin-specific pro 99.8 2.2E-19 4.7E-24 211.8 7.5 276 1297-1609 102-445 (473)
42 KOG1275 PAB-dependent poly(A) 99.4 6E-13 1.3E-17 165.2 12.0 296 1297-1614 496-846 (1118)
43 PF15499 Peptidase_C98: Ubiqui 98.3 1.6E-06 3.6E-11 97.2 7.7 128 1438-1605 120-253 (275)
44 PRK15359 type III secretion sy 96.8 0.0095 2.1E-07 63.4 11.7 93 63-173 30-122 (144)
45 PLN03088 SGT1, suppressor of 96.6 0.01 2.2E-07 72.5 11.4 98 62-178 7-104 (356)
46 KOG1887 Ubiquitin carboxyl-ter 96.4 0.00043 9.4E-09 88.5 -2.6 323 826-1196 24-357 (806)
47 TIGR02552 LcrH_SycD type III s 95.9 0.1 2.2E-06 53.9 12.7 96 59-172 19-114 (135)
48 PRK10803 tol-pal system protei 95.9 0.095 2.1E-06 61.6 13.7 99 58-171 143-245 (263)
49 PRK11189 lipoprotein NlpI; Pro 95.4 0.088 1.9E-06 62.7 11.1 99 61-178 68-166 (296)
50 TIGR02795 tol_pal_ybgF tol-pal 95.0 0.26 5.7E-06 49.0 11.6 97 61-172 6-105 (119)
51 PRK15179 Vi polysaccharide bio 94.8 0.25 5.3E-06 65.5 13.5 126 55-189 49-198 (694)
52 COG4783 Putative Zn-dependent 94.7 0.14 3.1E-06 63.3 10.4 101 63-182 312-412 (484)
53 PRK10370 formate-dependent nit 94.7 0.26 5.7E-06 55.5 11.6 98 65-177 81-178 (198)
54 PRK12370 invasion protein regu 94.3 0.17 3.8E-06 65.5 10.6 94 69-181 316-409 (553)
55 PF13894 zf-C2H2_4: C2H2-type 94.3 0.03 6.4E-07 40.5 2.1 24 389-412 1-24 (24)
56 cd00189 TPR Tetratricopeptide 94.3 0.54 1.2E-05 42.6 11.2 92 63-172 6-97 (100)
57 COG3063 PilF Tfp pilus assembl 94.2 0.3 6.6E-06 55.6 10.6 106 58-181 36-144 (250)
58 PF13432 TPR_16: Tetratricopep 94.2 0.1 2.2E-06 47.3 5.8 62 63-138 3-64 (65)
59 PRK12370 invasion protein regu 93.8 0.19 4.1E-06 65.1 9.6 99 66-182 347-445 (553)
60 KOG1864 Ubiquitin-specific pro 93.7 0.1 2.2E-06 67.4 6.4 108 1303-1414 34-154 (587)
61 PF00096 zf-C2H2: Zinc finger, 93.7 0.048 1E-06 39.6 2.1 23 389-412 1-23 (23)
62 PF13371 TPR_9: Tetratricopept 92.8 0.39 8.3E-06 44.3 7.3 69 66-148 4-72 (73)
63 KOG2076 RNA polymerase III tra 92.7 0.77 1.7E-05 60.5 12.1 112 57-172 139-270 (895)
64 TIGR00990 3a0801s09 mitochondr 92.5 1.3 2.8E-05 58.2 14.4 107 60-173 368-497 (615)
65 TIGR02521 type_IV_pilW type IV 92.5 0.83 1.8E-05 50.0 10.8 97 58-172 32-128 (234)
66 PRK15174 Vi polysaccharide exp 92.4 0.54 1.2E-05 62.3 10.7 100 65-179 220-319 (656)
67 PRK15174 Vi polysaccharide exp 92.4 0.4 8.7E-06 63.5 9.4 99 64-181 49-147 (656)
68 PF09976 TPR_21: Tetratricopep 91.8 1.8 3.8E-05 46.0 11.8 92 62-168 16-110 (145)
69 PF08715 Viral_protease: Papai 91.5 0.95 2.1E-05 54.5 10.3 69 1310-1410 110-179 (320)
70 TIGR00990 3a0801s09 mitochondr 91.4 0.99 2.1E-05 59.3 11.4 102 64-172 338-462 (615)
71 PF13414 TPR_11: TPR repeat; P 91.3 0.68 1.5E-05 42.2 7.0 65 94-172 3-67 (69)
72 TIGR03302 OM_YfiO outer membra 91.0 2.5 5.5E-05 48.0 12.9 102 64-172 77-195 (235)
73 PRK09782 bacteriophage N4 rece 90.5 2.2 4.7E-05 59.0 13.6 48 122-173 660-707 (987)
74 PF12895 Apc3: Anaphase-promot 90.5 1.2 2.6E-05 42.6 8.1 83 70-169 2-84 (84)
75 PRK10370 formate-dependent nit 89.9 1.5 3.3E-05 49.3 9.7 95 70-180 52-146 (198)
76 COG5010 TadD Flp pilus assembl 89.4 1.6 3.4E-05 50.8 9.2 92 63-172 106-197 (257)
77 PRK02603 photosystem I assembl 88.9 2.9 6.2E-05 45.7 10.7 100 60-170 38-140 (172)
78 PF09295 ChAPs: ChAPs (Chs5p-A 88.8 1.7 3.7E-05 54.0 9.8 80 69-166 212-291 (395)
79 PF13432 TPR_16: Tetratricopep 88.3 1.2 2.5E-05 40.3 5.9 53 121-178 13-65 (65)
80 KOG0553 TPR repeat-containing 88.1 0.87 1.9E-05 53.8 6.2 55 114-172 90-144 (304)
81 PF13525 YfiO: Outer membrane 87.9 6.6 0.00014 44.3 12.9 83 60-142 45-127 (203)
82 PRK15179 Vi polysaccharide bio 87.6 2.7 5.9E-05 56.0 11.0 48 122-173 171-218 (694)
83 PF13414 TPR_11: TPR repeat; P 87.5 1.7 3.7E-05 39.6 6.7 63 61-136 7-69 (69)
84 cd05804 StaR_like StaR_like; a 87.5 9.1 0.0002 46.1 14.8 110 60-173 46-178 (355)
85 PRK10049 pgaA outer membrane p 87.1 2.9 6.2E-05 56.6 11.2 101 62-181 364-464 (765)
86 PF14559 TPR_19: Tetratricopep 86.8 1.7 3.6E-05 39.5 6.1 68 67-148 1-68 (68)
87 PF13525 YfiO: Outer membrane 86.6 8.5 0.00018 43.4 13.0 70 61-141 9-78 (203)
88 PF13512 TPR_18: Tetratricopep 86.5 2.6 5.6E-05 45.2 8.0 82 59-140 49-134 (142)
89 TIGR03302 OM_YfiO outer membra 86.2 4.5 9.8E-05 45.9 10.7 104 58-172 34-144 (235)
90 PRK09782 bacteriophage N4 rece 86.0 3.2 6.9E-05 57.5 10.7 53 122-179 626-678 (987)
91 TIGR02521 type_IV_pilW type IV 85.7 5.1 0.00011 43.7 10.5 105 61-172 69-198 (234)
92 TIGR02917 PEP_TPR_lipo putativ 85.4 3.4 7.4E-05 55.1 10.6 88 67-172 169-256 (899)
93 PF13512 TPR_18: Tetratricopep 85.1 2.4 5.3E-05 45.4 7.0 78 62-152 15-92 (142)
94 CHL00033 ycf3 photosystem I as 85.0 6 0.00013 42.9 10.4 101 61-172 39-142 (168)
95 PRK10866 outer membrane biogen 84.6 3.4 7.3E-05 48.2 8.6 71 60-141 35-105 (243)
96 PRK10747 putative protoheme IX 84.5 5 0.00011 50.0 10.7 85 69-172 306-390 (398)
97 PF12688 TPR_5: Tetratrico pep 83.8 10 0.00022 39.7 10.8 95 62-171 6-103 (120)
98 COG4235 Cytochrome c biogenesi 83.0 6.2 0.00013 46.9 9.9 85 73-172 138-222 (287)
99 TIGR00540 hemY_coli hemY prote 82.5 8.2 0.00018 48.2 11.5 104 59-181 86-190 (409)
100 PRK11906 transcriptional regul 81.9 4.9 0.00011 50.4 8.9 83 72-172 319-401 (458)
101 PRK11447 cellulose synthase su 81.8 5.6 0.00012 56.4 10.7 96 64-178 276-385 (1157)
102 PRK10049 pgaA outer membrane p 81.7 6.2 0.00013 53.5 10.7 89 65-172 57-145 (765)
103 PRK15363 pathogenicity island 81.7 16 0.00036 39.9 11.7 93 63-173 41-133 (157)
104 PRK11788 tetratricopeptide rep 81.6 9.8 0.00021 46.4 11.6 42 63-107 186-227 (389)
105 PRK11788 tetratricopeptide rep 81.5 9.5 0.00021 46.5 11.4 99 59-172 143-243 (389)
106 PF13371 TPR_9: Tetratricopept 81.3 3.6 7.7E-05 37.9 5.9 48 122-173 12-59 (73)
107 PRK11447 cellulose synthase su 80.5 6.6 0.00014 55.7 10.7 87 63-171 579-665 (1157)
108 PF13429 TPR_15: Tetratricopep 79.2 5.6 0.00012 46.7 8.1 55 122-181 163-217 (280)
109 PF13429 TPR_15: Tetratricopep 78.9 5.5 0.00012 46.8 7.8 98 65-181 154-251 (280)
110 PF12874 zf-met: Zinc-finger o 78.5 1.5 3.2E-05 32.5 1.9 23 389-411 1-23 (25)
111 TIGR02917 PEP_TPR_lipo putativ 78.2 8.3 0.00018 51.5 10.2 95 56-168 21-115 (899)
112 CHL00033 ycf3 photosystem I as 78.1 13 0.00027 40.4 9.8 76 61-139 76-154 (168)
113 PF14559 TPR_19: Tetratricopep 77.6 5.4 0.00012 36.1 5.8 48 121-172 7-54 (68)
114 TIGR02552 LcrH_SycD type III s 77.4 9.5 0.00021 39.2 8.2 83 80-181 6-88 (135)
115 PF13281 DUF4071: Domain of un 77.3 19 0.00042 44.6 11.9 87 63-155 185-275 (374)
116 PRK10866 outer membrane biogen 77.3 9.4 0.0002 44.5 9.0 79 61-139 73-158 (243)
117 PRK15359 type III secretion sy 77.0 11 0.00023 40.3 8.6 78 61-152 62-139 (144)
118 PLN03088 SGT1, suppressor of 77.0 11 0.00023 46.5 9.9 79 61-153 40-118 (356)
119 PHA00616 hypothetical protein 76.3 1.4 3E-05 37.9 1.3 25 390-414 3-27 (44)
120 cd05804 StaR_like StaR_like; a 76.2 12 0.00027 45.0 10.0 95 60-172 117-215 (355)
121 KOG2053 Mitochondrial inherita 75.8 26 0.00056 47.1 12.9 110 52-183 4-113 (932)
122 PRK11189 lipoprotein NlpI; Pro 75.5 8.8 0.00019 45.8 8.4 88 71-173 40-128 (296)
123 PF04959 ARS2: Arsenite-resist 75.3 1.2 2.7E-05 50.6 1.1 32 384-416 74-105 (214)
124 COG1729 Uncharacterized protei 75.2 24 0.00051 41.7 11.3 86 59-155 143-231 (262)
125 PLN03098 LPA1 LOW PSII ACCUMUL 74.0 24 0.00052 44.6 11.6 69 56-135 74-142 (453)
126 TIGR00540 hemY_coli hemY prote 73.5 23 0.00049 44.4 11.6 98 57-172 263-364 (409)
127 KOG1126 DNA-binding cell divis 73.4 7 0.00015 50.5 7.0 103 70-180 434-559 (638)
128 PF05605 zf-Di19: Drought indu 72.9 2.5 5.4E-05 37.7 2.1 25 390-415 4-28 (54)
129 COG4049 Uncharacterized protei 72.6 1.9 4.1E-05 38.5 1.2 30 387-416 16-45 (65)
130 PRK02603 photosystem I assembl 71.5 18 0.0004 39.4 9.0 74 63-139 78-154 (172)
131 COG4105 ComL DNA uptake lipopr 71.2 15 0.00032 43.1 8.4 77 60-139 74-150 (254)
132 PF14863 Alkyl_sulf_dimr: Alky 70.3 21 0.00046 38.4 8.8 66 59-127 72-137 (141)
133 TIGR02795 tol_pal_ybgF tol-pal 70.2 13 0.00028 36.8 6.9 68 62-140 44-111 (119)
134 PF12171 zf-C2H2_jaz: Zinc-fin 69.8 2.2 4.8E-05 32.5 1.0 22 389-410 2-23 (27)
135 PRK10747 putative protoheme IX 69.8 34 0.00073 42.8 11.9 108 62-178 158-296 (398)
136 PF13913 zf-C2HC_2: zinc-finge 68.6 3.1 6.7E-05 31.5 1.5 18 390-408 4-21 (25)
137 KOG0624 dsRNA-activated protei 68.0 55 0.0012 39.8 12.1 102 52-171 33-134 (504)
138 PF13174 TPR_6: Tetratricopept 67.8 5.8 0.00013 30.5 3.0 27 64-90 7-33 (33)
139 COG4105 ComL DNA uptake lipopr 67.7 14 0.00031 43.2 7.3 72 61-143 38-109 (254)
140 smart00355 ZnF_C2H2 zinc finge 65.9 4.4 9.5E-05 29.3 1.9 24 389-413 1-24 (26)
141 PF13431 TPR_17: Tetratricopep 65.7 5.7 0.00012 32.0 2.6 33 127-163 1-33 (34)
142 PF12756 zf-C2H2_2: C2H2 type 65.3 4.4 9.5E-05 39.6 2.3 25 388-412 50-74 (100)
143 PRK10153 DNA-binding transcrip 65.3 78 0.0017 41.2 14.1 91 73-173 358-450 (517)
144 KOG2610 Uncharacterized conser 65.2 22 0.00048 42.8 8.2 98 64-180 110-211 (491)
145 KOG0553 TPR repeat-containing 65.1 27 0.00058 41.8 8.9 89 66-172 90-178 (304)
146 KOG2076 RNA polymerase III tra 62.4 53 0.0012 44.3 11.7 120 52-200 411-530 (895)
147 PF03704 BTAD: Bacterial trans 62.2 74 0.0016 33.4 11.1 102 53-155 2-112 (146)
148 COG5010 TadD Flp pilus assembl 59.4 59 0.0013 38.3 10.2 123 64-210 73-196 (257)
149 PF09976 TPR_21: Tetratricopep 58.8 81 0.0017 33.4 10.7 100 55-170 46-145 (145)
150 KOG2002 TPR-containing nuclear 58.8 28 0.0006 47.1 8.3 111 56-181 163-273 (1018)
151 PLN03098 LPA1 LOW PSII ACCUMUL 58.8 22 0.00048 44.8 7.2 69 87-173 71-142 (453)
152 COG4235 Cytochrome c biogenesi 58.6 70 0.0015 38.4 10.9 97 67-181 166-265 (287)
153 PF13912 zf-C2H2_6: C2H2-type 57.5 6.2 0.00014 29.7 1.4 22 390-411 3-24 (27)
154 PHA02768 hypothetical protein; 55.8 6.7 0.00014 35.5 1.5 23 390-413 7-29 (55)
155 PRK10153 DNA-binding transcrip 55.5 55 0.0012 42.5 10.3 52 122-179 437-488 (517)
156 PF13428 TPR_14: Tetratricopep 55.5 22 0.00047 30.0 4.5 35 64-101 8-42 (44)
157 PF05408 Peptidase_C28: Foot-a 55.2 7.9 0.00017 42.9 2.2 37 1577-1615 132-170 (193)
158 PRK14574 hmsH outer membrane p 55.1 85 0.0018 43.2 12.3 112 57-172 34-165 (822)
159 KOG4234 TPR repeat-containing 55.0 1.6E+02 0.0035 33.7 12.1 99 66-181 104-202 (271)
160 KOG0376 Serine-threonine phosp 53.8 7.6 0.00016 48.7 2.1 55 115-173 14-68 (476)
161 KOG0548 Molecular co-chaperone 53.6 69 0.0015 41.1 10.2 90 65-172 366-455 (539)
162 KOG1173 Anaphase-promoting com 53.5 50 0.0011 42.5 9.0 56 122-182 363-418 (611)
163 PLN02789 farnesyltranstransfer 52.5 76 0.0016 38.7 10.3 89 69-172 49-137 (320)
164 KOG1125 TPR repeat-containing 52.3 23 0.00049 45.5 5.8 85 70-172 443-527 (579)
165 KOG0547 Translocase of outer m 51.7 63 0.0014 41.1 9.2 48 122-173 445-492 (606)
166 PRK11906 transcriptional regul 51.5 1.3E+02 0.0029 38.2 12.2 114 55-179 253-373 (458)
167 PF13945 NST1: Salt tolerance 51.4 8.5 0.00019 43.2 1.8 31 329-359 102-132 (190)
168 PLN02789 farnesyltranstransfer 51.1 89 0.0019 38.1 10.6 88 69-172 83-171 (320)
169 COG2956 Predicted N-acetylgluc 50.3 94 0.002 37.8 10.0 88 71-171 155-242 (389)
170 KOG0550 Molecular chaperone (D 49.6 77 0.0017 39.6 9.4 110 57-173 169-317 (486)
171 KOG4162 Predicted calmodulin-b 49.4 91 0.002 41.6 10.5 101 73-177 410-512 (799)
172 PF09237 GAGA: GAGA factor; I 48.7 14 0.0003 32.9 2.2 27 389-415 25-51 (54)
173 PRK14574 hmsH outer membrane p 48.3 73 0.0016 43.8 10.1 106 58-182 417-522 (822)
174 PF06552 TOM20_plant: Plant sp 47.2 1.2E+02 0.0027 34.1 9.8 60 76-138 54-113 (186)
175 PRK10803 tol-pal system protei 45.6 74 0.0016 37.8 8.5 64 65-139 188-251 (263)
176 PF05408 Peptidase_C28: Foot-a 42.9 12 0.00025 41.6 1.2 21 1301-1323 34-54 (193)
177 PF06552 TOM20_plant: Plant sp 40.1 2.1E+02 0.0046 32.3 10.2 94 75-172 9-109 (186)
178 PF13424 TPR_12: Tetratricopep 40.0 52 0.0011 30.6 5.0 71 94-172 5-75 (78)
179 KOG4626 O-linked N-acetylgluco 39.4 55 0.0012 42.5 6.3 82 73-172 268-349 (966)
180 KOG0547 Translocase of outer m 37.6 1.2E+02 0.0026 38.7 8.7 83 71-172 340-423 (606)
181 PRK14720 transcript cleavage f 37.4 2.6E+02 0.0055 38.9 12.4 111 65-186 38-159 (906)
182 PHA00733 hypothetical protein 37.2 21 0.00045 37.8 2.0 25 389-413 100-124 (128)
183 COG1592 Rubrerythrin [Energy p 36.4 26 0.00057 38.7 2.6 27 370-399 119-145 (166)
184 smart00451 ZnF_U1 U1-like zinc 35.4 27 0.00058 27.9 1.9 23 389-411 4-26 (35)
185 KOG4340 Uncharacterized conser 34.6 2.1E+02 0.0047 34.4 9.6 84 65-166 18-101 (459)
186 KOG4626 O-linked N-acetylgluco 33.8 3.6E+02 0.0077 35.7 11.9 81 122-210 439-525 (966)
187 PF12756 zf-C2H2_2: C2H2 type 33.5 14 0.00031 35.9 0.1 26 391-416 2-27 (100)
188 PF15297 CKAP2_C: Cytoskeleton 33.0 11 0.00023 45.9 -1.0 54 334-393 82-147 (353)
189 KOG1127 TPR repeat-containing 32.9 1.8E+02 0.004 40.1 9.6 101 58-172 3-103 (1238)
190 cd00189 TPR Tetratricopeptide 32.8 1.2E+02 0.0026 26.9 6.1 52 122-178 17-68 (100)
191 KOG0543 FKBP-type peptidyl-pro 32.5 5.4E+02 0.012 32.5 13.0 98 65-172 216-320 (397)
192 PF04733 Coatomer_E: Coatomer 32.0 2.1E+02 0.0045 34.5 9.5 94 63-172 137-230 (290)
193 KOG3060 Uncharacterized conser 31.1 3.1E+02 0.0067 32.7 10.0 106 68-181 63-191 (289)
194 KOG4642 Chaperone-dependent E3 30.2 65 0.0014 37.7 4.5 51 118-172 23-73 (284)
195 COG4783 Putative Zn-dependent 30.1 5.2E+02 0.011 33.3 12.5 95 67-172 350-454 (484)
196 PF12907 zf-met2: Zinc-binding 30.1 14 0.0003 31.4 -0.6 26 390-415 3-31 (40)
197 KOG4326 Mitochondrial F1F0-ATP 29.9 48 0.001 31.4 2.8 56 892-952 7-62 (81)
198 PF01927 Mut7-C: Mut7-C RNAse 27.7 26 0.00057 37.8 0.9 11 388-398 124-134 (147)
199 PRK15363 pathogenicity island 27.0 3E+02 0.0065 30.4 8.7 83 121-212 51-133 (157)
200 PF12688 TPR_5: Tetratrico pep 26.9 3E+02 0.0066 28.8 8.5 51 57-107 38-88 (120)
201 KOG4648 Uncharacterized conser 26.9 59 0.0013 39.5 3.6 61 97-172 100-160 (536)
202 PF00515 TPR_1: Tetratricopept 26.8 97 0.0021 24.1 3.8 34 94-138 1-34 (34)
203 KOG1174 Anaphase-promoting com 26.6 2.4E+02 0.0052 35.5 8.5 87 67-171 310-396 (564)
204 PF12569 NARP1: NMDA receptor- 26.5 2.6E+02 0.0056 36.6 9.5 88 61-166 198-285 (517)
205 PF05605 zf-Di19: Drought indu 26.4 34 0.00074 30.5 1.2 22 389-412 32-53 (54)
206 PF09295 ChAPs: ChAPs (Chs5p-A 25.5 3E+02 0.0066 34.7 9.6 82 70-172 182-263 (395)
207 PF02891 zf-MIZ: MIZ/SP-RING z 25.1 21 0.00046 31.6 -0.3 18 379-396 32-49 (50)
208 KOG1126 DNA-binding cell divis 24.9 2.6E+02 0.0057 37.0 8.9 97 65-183 531-627 (638)
209 COG2956 Predicted N-acetylgluc 24.1 7.8E+02 0.017 30.5 11.9 109 58-186 181-290 (389)
210 KOG0548 Molecular co-chaperone 23.5 3.3E+02 0.0072 35.3 9.3 82 55-150 390-471 (539)
211 KOG1173 Anaphase-promoting com 23.3 3.8E+02 0.0083 35.0 9.7 92 58-172 427-518 (611)
212 PF02099 Josephin: Josephin; 23.0 85 0.0018 34.5 3.7 30 1574-1605 99-128 (157)
213 KOG1840 Kinesin light chain [C 22.9 5.9E+02 0.013 33.3 11.7 142 65-213 249-398 (508)
214 PF02259 FAT: FAT domain; Int 22.6 5.5E+02 0.012 30.8 11.0 99 56-154 183-307 (352)
215 PF14561 TPR_20: Tetratricopep 22.6 4.5E+02 0.0097 26.1 8.3 46 123-172 6-51 (90)
216 KOG4279 Serine/threonine prote 22.6 98 0.0021 41.0 4.5 80 69-155 255-336 (1226)
217 PF07719 TPR_2: Tetratricopept 22.6 1.1E+02 0.0025 23.4 3.5 33 95-138 2-34 (34)
218 PF12895 Apc3: Anaphase-promot 22.4 1.2E+02 0.0026 28.8 4.2 41 64-108 32-72 (84)
219 PHA00732 hypothetical protein 22.4 51 0.0011 32.1 1.7 24 390-413 3-26 (79)
220 PF04733 Coatomer_E: Coatomer 21.8 3.4E+02 0.0074 32.7 8.8 110 54-181 163-273 (290)
221 PF13226 DUF4034: Domain of un 21.3 2.3E+02 0.005 34.1 7.0 65 76-143 62-137 (277)
222 PF09986 DUF2225: Uncharacteri 21.0 4.7E+02 0.01 30.2 9.3 70 99-172 116-194 (214)
223 KOG2376 Signal recognition par 21.0 2.5E+02 0.0054 36.8 7.5 38 122-166 96-133 (652)
224 KOG1125 TPR repeat-containing 20.3 3.1E+02 0.0066 35.9 8.1 80 60-153 288-367 (579)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=1.8e-128 Score=1147.40 Aligned_cols=463 Identities=47% Similarity=0.749 Sum_probs=441.2
Q ss_pred HHHHHhccCCHHHHcceeeEehhhHHhhhhhcccchhHHHHHHHHHHHHhcCccceEeccccccccCChHHHHHhhhhhh
Q 000344 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 333 ~v~~yW~~m~~e~kr~fL~V~i~~L~s~~~~~~~~~~~~~ls~al~fak~n~sW~fWiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
+||+||++|++|+||+||+|+|++|++||.+++++.++++|++||+|||+|++|+|||||+|+++|+|+++|++||+++|
T Consensus 2 ~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 2 RVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred chhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcCCCCCChHHhhhhccCCCccccHHHHHHHhhcccccccccccccccccCCCcccccccccccCCCcchh
Q 000344 413 MGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPEK 492 (1630)
Q Consensus 413 ~~~~~p~l~~~~p~~i~~~w~e~i~~~~W~Pvd~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~c~kd~~~~~~~~ 492 (1630)
+++++|++++++||+|+++|++||.+|+|+|||++||++||+||++++++ |.+ |
T Consensus 82 ~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~------~~~-----------~--------- 135 (466)
T PF04780_consen 82 PAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS------FVY-----------K--------- 135 (466)
T ss_pred hhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch------hhh-----------h---------
Confidence 99999999999999999999999999999999999999999999999985 222 3
Q ss_pred ccccCCCCCCccCCCcccccccccccccCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 000344 493 ENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVI 572 (1630)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wpl~~d~er~~lL~~i~~~~~~~~~~k~Ls~s~~~~v~ 572 (1630)
++|+.+ |||++|+||+||||+||.+|++||+||||||||++|||
T Consensus 136 -------------------------~gw~~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi 179 (466)
T PF04780_consen 136 -------------------------NGWSKD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVI 179 (466)
T ss_pred -------------------------cCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334455 99999999999999999999999999999999999999
Q ss_pred HhcHHHHhhcccccc-ccccCCCCCCccccccChhhHHHHHHHHHHHhhhccCccccCcccccccccccCCCcccceeee
Q 000344 573 QYTMDELQSLASGSL-LLNHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIV 651 (1630)
Q Consensus 573 ~~t~~~l~~~~s~~~-l~~~~l~~tp~~icfL~~~~L~~il~fL~~l~~~~~l~r~~~~~~~~~~~~s~~~~~~ike~i~ 651 (1630)
+||++|||+|+++++ |.||+|+|||||||||+|++|++||+||++|+ | +|+++++.+++++++|+++++|||+|+
T Consensus 180 ~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI~ 255 (466)
T PF04780_consen 180 QFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKID 255 (466)
T ss_pred HhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceeee
Confidence 999999999986555 45999999999999999999999999999999 8 477788899999999999999999999
Q ss_pred ccCCcchhhhhhhhhccccccCCccccccccccccCCCCCccCccceecccccCCCCCcccccccchhHhhhhhhhHHHH
Q 000344 652 LNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQ 731 (1630)
Q Consensus 652 ~~~~~s~LllD~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~sWl~~~~s~~e~~~sw~~~~e~~~~~~~~vl~ 731 (1630)
||+||||||||+|||+|++.+++++|+|.++.+++||++++++||+||||||+||||++||.+|+++|++|++|||||||
T Consensus 256 ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~ 335 (466)
T PF04780_consen 256 LDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLR 335 (466)
T ss_pred cCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999996666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhhhhccccchHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHhhccCccccccccchhhh
Q 000344 732 TLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAI 811 (1630)
Q Consensus 732 ~~~~~~~~l~~~~~kk~~~l~~e~~l~~ve~~c~~E~~rr~~~~~~~~~~y~s~l~~~~eel~~~~~~~~~~~~~~~~~i 811 (1630)
+||++|++|+++|+|||++|+||+|||+|||||++|++||++++||||++|||+||+|||||+++++|+++++++|+|||
T Consensus 336 ~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v 415 (466)
T PF04780_consen 336 AVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAV 415 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCccccccCCccccccccCCCCCCccccccccccchHHHHH
Q 000344 812 LNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1630)
Q Consensus 812 ~~vl~~~~~~~~~~f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~~~~~ 866 (1630)
+|||++|++ |+|+|.+..+| +++|||+++|++|| ++++++|+.|+||+.+
T Consensus 416 ~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 416 RDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 999999999 77777777666 56699999999999 9999999999998743
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-85 Score=798.90 Aligned_cols=772 Identities=26% Similarity=0.371 Sum_probs=644.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhcHHHHhhcc-ccccccccCCCCCCccccccChhhHHHHHH
Q 000344 535 WPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNHGVGQTPMCICFLGVHQLRKIVK 613 (1630)
Q Consensus 535 Wpl~~d~er~~lL~~i~~~~~~~~~~k~Ls~s~~~~v~~~t~~~l~~~~-s~~~l~~~~l~~tp~~icfL~~~~L~~il~ 613 (1630)
||++.|++|+++|++|+.++++++.+||++|++++|+|.||+.||..+. |++.+ .+++.+|||+||||+++.|.+|++
T Consensus 2 ~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~sir~~~m~~p~~~l~~~~~Seh~~-~~~~v~t~qs~~~le~~~l~~i~~ 80 (806)
T KOG1887|consen 2 WPLAEDEERSKLAKEIKLLLVSFCDRKILSCSIRDWLMGFPVKHLGQLEVSEHSL-DSRLVETPQSICFLENPELYQVLD 80 (806)
T ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhhhccCcccchhhcCCHHHhccceeccccc-chhhhcccchhhhhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995 99999 999999999999999999999999
Q ss_pred HHHHHhhhccCccccCcccccccccccCCCcccceeeeccCCcchhhhhhhhhccccccCCccccccccc-cccCCCCCc
Q 000344 614 FLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSA-NIRHENGVA 692 (1630)
Q Consensus 614 fL~~l~~~~~l~r~~~~~~~~~~~~s~~~~~~ike~i~~~~~~s~LllD~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~ 692 (1630)
|+..++ | .|++++++++.++++++..++++++|+||.++++|++|++++.+.++.+++.|++ +|+ |.++|.+..
T Consensus 81 ~~~~~~--~--~~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~~~~~g~~-n~~~p~~~~~~~~ 155 (806)
T KOG1887|consen 81 FLKKIK--C--QRNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNRFDDEGTI-NVFDPEAHYAKTK 155 (806)
T ss_pred HHHhhc--c--ccccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCccccCCCcc-cccCchHhhhhhh
Confidence 999999 8 6999999999999999999999999999999999999999999999999998888 888 999999999
Q ss_pred cCccceecccccCCCCCcccccccchhHhhhhhhhHHHHHHHHHHhhhhhHhhhhccccchHHHHHHHHHHHhhhhhhhh
Q 000344 693 EDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRE 772 (1630)
Q Consensus 693 ~~~d~~~sWl~~~~s~~e~~~sw~~~~e~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~~e~~l~~ve~~c~~E~~rr~ 772 (1630)
.++|.+++|+.++.+++..| ++++|++++.+||+++|++++||+++.+.|++|+.++.|.+|++.++++|++||+||+
T Consensus 156 ~~~d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~ 233 (806)
T KOG1887|consen 156 SQLDDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRK 233 (806)
T ss_pred hhcchhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhh
Confidence 99999999999988888886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHhhhccCCCCccccccCCccccccccCCCCCCccc
Q 000344 773 TVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRN 852 (1630)
Q Consensus 773 ~~~~~~~~~y~s~l~~~~eel~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~f~~~~~~~~~~~~~~d~~~~~~~~~~~ 852 (1630)
+.+++||..||++||+.|+|-+- +..+..++++++|+|||..+.. |+|.+.+..+|++. +
T Consensus 234 n~~~dq~~~y~~~~~~~~qe~~~---~~~~~~~~~~~~v~d~~~~~s~---p~~~~~~~~~c~N~--------------~ 293 (806)
T KOG1887|consen 234 NKPEDQWLEYEQLLLDSCQEQQI---EQSLQTKLFLCAVRDVLEGASS---PTFAFADASDCLNL--------------I 293 (806)
T ss_pred cchHHHHHHHHHhchHHHHHHHH---HhhhhhhhHHHHHHhhhccccC---CCCCccchHhhcch--------------h
Confidence 99999999999999999999873 3338899999999999999999 99999999999999 7
Q ss_pred cccccccchHHHHHHHHHHHhHHhhhhhhhhhhhhchhhHHHHhhhcCccccccchhhhhHhHHHHHHHHHHHHHhhhhh
Q 000344 853 KDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDAT 932 (1630)
Q Consensus 853 ~~~~~~~d~~~~~~i~~~k~~~~~~~~~idakil~~~~~~~~l~~~l~~~s~~dyr~~ilpl~k~~l~~~L~~~~~~da~ 932 (1630)
+.|++.+|++|..+|..+|+.++.++..+|++|+.+.++++.|++.|.++++||||+++++++|.|+ ++++.+|+.+
T Consensus 294 ~~~~~~~~~~~~~~i~~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~---~~e~k~~~~k 370 (806)
T KOG1887|consen 294 REHKQEKDDAVLPSIDLLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL---LDEIKNMEKK 370 (806)
T ss_pred hhccccccceecCCcchhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh---hhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8888889999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhccCCCCCCcCccccchhhhhhhccccccCCCCCCCCCccccccccccccCCccCCCCCC
Q 000344 933 EKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVSFPVESDGDN 1012 (1630)
Q Consensus 933 ~k~~a~~~a~~a~l~l~~~k~~~~~~~~~~~~~~k~k~kkk~k~~~k~k~~k~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1630)
+|++++ .|+|.-+.+|.+.. +...|||+ .+..|.+|
T Consensus 371 ~k~~~~----~~~l~~e~ek~~~~----------~~~~~~k~-----~~~~~~~s------------------------- 406 (806)
T KOG1887|consen 371 AKKDLA----EADLLSELEKEKPS----------KHQSKKKK-----QGSNKRTS------------------------- 406 (806)
T ss_pred hhhhhh----hhhhhhHHHHhhhc----------cccccccc-----cccccCcc-------------------------
Confidence 988844 77777666665422 11222222 12223333
Q ss_pred CCCcceeccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhhccccccccCccccccccccCCCC
Q 000344 1013 PDSETVVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCDTYLGHG 1092 (1630)
Q Consensus 1013 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ie~e~k~k~~~eq~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1630)
.+++.+..+. . + ++.+
T Consensus 407 ------~~~ss~l~~~-~------------------------------------~--~~~~------------------- 422 (806)
T KOG1887|consen 407 ------TSKSSLLDKT-V------------------------------------E--HKHS------------------- 422 (806)
T ss_pred ------cccCCccccc-c------------------------------------c--cccc-------------------
Confidence 1211111110 0 0 1211
Q ss_pred CCCcccccccccCcccccccCCCCCCCCCCCCccccCCCccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q 000344 1093 SNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTPVNTANGAAVPIRSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTD 1172 (1630)
Q Consensus 1093 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1630)
+.+++.++ +|+ ++++.+|+|.+++
T Consensus 423 ---------------~~l~~~~s---------------------------~~s--------------~~~~~e~s~~~~~ 446 (806)
T KOG1887|consen 423 ---------------HGLEPYSS---------------------------SPS--------------LGKSEEGSMEPED 446 (806)
T ss_pred ---------------cccCCCCC---------------------------ccc--------------cccccCCcccccc
Confidence 22333333 233 8889999999999
Q ss_pred CcCCCCcccccCCcccCCccccccCccccccccccCCcccccccCCCCCCCCCc--cccccccccchhHhhhHHHHHHHH
Q 000344 1173 RRTGRRGRRHRSSNRSQDWKNQALSSEKENIGVRSDDSHLTGAAAPYLGDGGTK--TLRQLHAEEDDEERFQADLKQAVR 1250 (1630)
Q Consensus 1173 ~~~~~~~~~~~~s~~~vd~k~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~f~~dL~~av~ 1250 (1630)
+..+++|..++++ ++.|+++ .++ ++..++.++
T Consensus 447 ~~~~e~g~le~s~-------------~~~~q~e------------------~~k~~~~~~~p~e~--------------- 480 (806)
T KOG1887|consen 447 GLSNENGNLEISS-------------NTRNQEE------------------ATKDPDMKNMPPED--------------- 480 (806)
T ss_pred cccCCCcchhhcc-------------cccchhh------------------cccCcccccCCCcc---------------
Confidence 9999999999999 7776622 222 234444444
Q ss_pred HhhhhcccccCCcccccccccccchhhhcccccccccccccCCCCcccccccccCCCCCccccchHHHHH----HHhhHH
Q 000344 1251 QSLDTFQAHQKMPLVSSLRMTQNVSLEANKVAVLSNEVRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQS----LWHLRR 1326 (1630)
Q Consensus 1251 ~s~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~P~s~~~~~~ssng~~~~~~GL~NlGN~NTCYMNSVLQ~----L~h~p~ 1326 (1630)
+. +++. .... -| -.|-.|+.+++ |+++..
T Consensus 481 -~~-------------------------------s~~~--e~~~-----------~~--~~~~~~saldm~lk~~~n~~i 513 (806)
T KOG1887|consen 481 -SR-------------------------------SSHT--ESAI-----------GG--AAARYNSALDMTLKALLNIKV 513 (806)
T ss_pred -cc-------------------------------cccc--cccc-----------cc--ccceehhHHHHHHHHhhhhhh
Confidence 11 1111 0111 01 25555666654 444555
Q ss_pred HHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHH
Q 000344 1327 FREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFD 1406 (1630)
Q Consensus 1327 Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD 1406 (1630)
|.+.++..+..... -.+.++ +..++|.+..+......++.++|..+|.
T Consensus 514 ~~e~l~~~~q~~~~----~~vp~a----------------------------l~~~~~~s~~~~~~~~~~~S~lL~~ll~ 561 (806)
T KOG1887|consen 514 LKEDLLKNRQPLVA----LQVPIA----------------------------LQNFFPASVSESIKHEGVYSELLSDLLL 561 (806)
T ss_pred hhcccccccchhcc----ccCcch----------------------------hhhcCCcchHHHHHhhhhHHHHHHHHHh
Confidence 55444433221111 122223 3333444333444566778889999999
Q ss_pred HHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcccccccccceeeecchhhhhhhhhhc
Q 000344 1407 CLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMC 1486 (1630)
Q Consensus 1407 ~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~ 1486 (1630)
.|+........+.+...........|+++...++++++|+.....++.|.+|+..++++++++|++++.+.+++.++.++
T Consensus 562 ~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~ 641 (806)
T KOG1887|consen 562 SLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAF 641 (806)
T ss_pred hhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHh
Confidence 99887765533233222333345569999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeEEEEEEecCCCccccccccccccccceeccccccc-c
Q 000344 1487 AESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYR-G 1565 (1630)
Q Consensus 1487 ~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~~-g 1565 (1630)
++.+|++.|+...++.++.||...++||+.+.+++.|.++|+|++|.|.|... ++...|..+...+.+++|++..|+ |
T Consensus 642 ~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~teidis~~y~~g 720 (806)
T KOG1887|consen 642 QNITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFTIVLEWEKS-ETEKEISETTKALATEIDISRLYREG 720 (806)
T ss_pred hhhhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHhhhhHHHHhhhc
Confidence 99999999999889999999999999999999999999999999999988876 777889999999999999999995 8
Q ss_pred CCCCCceEEEEEEEEe--CCeEEEEEEeCCCCcEE--EEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1566 LDPKRRHSLVSVVCYY--GQHYHCFAYSHDQERWI--MYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1566 ~~~~~~Y~L~AVVvH~--GGHY~AyvR~~~~~~W~--~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
+++++.|+|+++|..+ |++|+|+++ ..++|+ ..+|..+..|++|++|++.|+++++||+||+
T Consensus 721 ~ep~t~yrLVSmv~~~e~~~~~~C~Ay--e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ 786 (806)
T KOG1887|consen 721 LEPNTKYRLVSMVGNHEEGEEYICFAY--EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILF 786 (806)
T ss_pred cCcCceeEEEEEeeeccccceEEEeec--cCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHH
Confidence 9999999999999988 699999999 678888 9999999999999999999999999999974
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-47 Score=449.82 Aligned_cols=287 Identities=22% Similarity=0.370 Sum_probs=240.3
Q ss_pred CCCCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccC
Q 000344 1292 NVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1630)
Q Consensus 1292 ssng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vs 1371 (1630)
.+......++||.|+| ||||+|||||||.++|||..||+...+...++....|++|+|+.++.....+ ...+++
T Consensus 100 ~~~~~~~~~~GL~NlG--NtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~----~g~pis 173 (545)
T KOG1865|consen 100 SSDRPAAVGAGLQNLG--NTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHN----PGHPIS 173 (545)
T ss_pred cccccccCCcceecCC--ccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcC----CCCccC
Confidence 4444567789999999 5999999999999999999999998887777778899999999988765532 446999
Q ss_pred cHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEE
Q 000344 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFE 1451 (1630)
Q Consensus 1372 P~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s 1451 (1630)
|..|+..|..+..+ |..|.|.||||||++++|.|+..+.......+ ......++|+++|||.+++
T Consensus 174 P~~i~s~L~~I~~~---f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~------------~~sq~ttlv~~iFGG~LrS 238 (545)
T KOG1865|consen 174 PSQILSNLRNISAH---FGRGRQEDAHEFLRFTVDAMQKACLPGHKQVD------------PRSQDTTLVHQIFGGYLRS 238 (545)
T ss_pred hHHHHHhhhhhccc---ccCCchhhHHHHHHHHHHHHHHhhcCCCccCC------------cccccceehhhhhccchhh
Confidence 99999999999877 99999999999999999999998863322111 0123478999999999999
Q ss_pred EEEccCCCcccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCcCcc--ceEEEEe
Q 000344 1452 RMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKL--NYIHHIL 1523 (1630)
Q Consensus 1452 ~i~C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c~~C~k~--~~kq~~I 1523 (1630)
+++|..|..+|.+ |+.++++.- . .....+|+++|+.|+ ++++|.|+ +|+++ +.|+.+|
T Consensus 239 ~vkC~~C~~vS~t--yE~~~dltv-e-------i~d~~sl~~AL~qFt~~E~L~gen~Y~C~----~Ck~~v~A~K~lti 304 (545)
T KOG1865|consen 239 QIKCLHCKGVSDT--YEPYLDLTL-E-------IQDASSLQQALEQFTKPEKLDGENAYHCG----RCKQKVPASKQLTI 304 (545)
T ss_pred ceecccCCCcccc--cccccceEE-E-------eccchhHHHHHHHhhhHHhhCCccccccc----hhhhhCcccceeee
Confidence 9999999999998 778776611 0 012368999999887 46778886 69988 4579999
Q ss_pred ecCCCeEEEEEEecCCCccccccccccccccceeccccccccC-CCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcE
Q 000344 1524 STPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERW 1597 (1630)
Q Consensus 1524 srlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~~g~-~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W 1597 (1630)
.++|+||+|||+||.. .+..||++.|. ||+.|||.||+.+. +..+.|.|||||+|.| |||+||||.. .|.|
T Consensus 305 ~raPnVLTi~LKRF~~-~~~gKI~K~I~-fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~W 381 (545)
T KOG1865|consen 305 HRAPNVLTLHLKRFSN-GTGGKISKPVS-FPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQW 381 (545)
T ss_pred ecCCceEEEeeehhcc-CcccccccccC-CcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcC-CCce
Confidence 9999999999999998 77899999986 99999999999854 4678999999999999 9999999975 6899
Q ss_pred EEEeCCcceEeCCHHHHHHH
Q 000344 1598 IMYDDKTVKVVGSWSDVLSM 1617 (1630)
Q Consensus 1598 ~~FDDs~Vt~Vsswe~Vl~~ 1617 (1630)
|.|||+.|+.+ +.+.|+..
T Consensus 382 y~~DDS~V~~~-~~~~VLsq 400 (545)
T KOG1865|consen 382 YKMDDSEVTQS-SIESVLSQ 400 (545)
T ss_pred EEccCceeeec-cccceecc
Confidence 99999999997 44667654
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-41 Score=397.33 Aligned_cols=278 Identities=19% Similarity=0.309 Sum_probs=217.3
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~k 1381 (1630)
||.|+|| |||||||||||+| .+++++|+.||..|+.... ...+++|..|+.+|+.
T Consensus 1 Gl~NlGn--TCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~--~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGN--TCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKK--RTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCc--ceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCC--CCeeECHHHHHHHHHh
Confidence 8999995 9999999999998 2789999999999986532 4568999999999998
Q ss_pred hCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcc
Q 000344 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1630)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1630)
.++. |..+.||||||||.+|||.||+++.........+ .............++|+++|+|++.++++|..|+..
T Consensus 56 ~~~~---f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~ 129 (300)
T cd02663 56 ENEL---FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN---RKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV 129 (300)
T ss_pred hcCC---CCCCccccHHHHHHHHHHHHHHHHHHHhhccccc---ccccccccCCcCCCChhhhCceEEEeeEEeCCCCCC
Confidence 8776 9999999999999999999999986532211100 000001112234678999999999999999999999
Q ss_pred cccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEEEeecCCCeEEE
Q 000344 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTT 1532 (1630)
Q Consensus 1462 S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~~IsrlP~VLiI 1532 (1630)
+.+ +++|+.+ ++.. ...+|+++|+.|+..+ .|.|+ .|+++ +.++..|.++|+||+|
T Consensus 130 s~~--~e~f~~Lsl~i~---------~~~sl~~~L~~~~~~E~l~~~~~~~C~----~C~~~~~a~k~~~i~~lP~vLii 194 (300)
T cd02663 130 SSR--DETFLDLSIDVE---------QNTSITSCLRQFSATETLCGRNKFYCD----ECCSLQEAEKRMKIKKLPKILAL 194 (300)
T ss_pred ccc--cceeEEeccCCC---------CcCCHHHHHHHhhcccccCCCCcEECC----CCCCceeEEEEEEeccCCceeEE
Confidence 877 5677654 2221 2368999999987544 46676 57766 4568889999999999
Q ss_pred EEEecCCCc---cccccccccccccceecccccccc-CCCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCC
Q 000344 1533 VLGWQNTCE---SFDDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDK 1603 (1630)
Q Consensus 1533 hLkr~~~~~---~~~KI~~~v~~fP~~LDLs~~~~g-~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs 1603 (1630)
||+||.... ...|+...+. ||..|||..+... ..+...|+|+|||+|.| |||+||+|+ +++||+|||+
T Consensus 195 ~LkRF~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~ 271 (300)
T cd02663 195 HLKRFKYDEQLNRYIKLFYRVV-FPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDE 271 (300)
T ss_pred EEEeEEeecccCCceecCceEe-cCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCC
Confidence 999887543 2467777765 9999999876432 33457999999999999 999999995 7999999999
Q ss_pred cceEeCCHHHHHHHhhc--CCCcccccC
Q 000344 1604 TVKVVGSWSDVLSMCER--GHLQPQKHD 1629 (1630)
Q Consensus 1604 ~Vt~Vsswe~Vl~~c~~--~~~QP~vl~ 1629 (1630)
.|++| ++++|.+.++. +.-+|+||+
T Consensus 272 ~V~~~-~~~~v~~~~~~~~~~~~aYiLf 298 (300)
T cd02663 272 TVEKI-DENAVEEFFGDSPNQATAYVLF 298 (300)
T ss_pred ceEEc-CHHHHHHhcCCCCCCCceEEEE
Confidence 99998 57899887754 356778775
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.3e-41 Score=398.56 Aligned_cols=294 Identities=23% Similarity=0.360 Sum_probs=225.4
Q ss_pred ccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCC--CcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHH
Q 000344 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1630)
Q Consensus 1301 ~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~--~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~a 1378 (1630)
+||.|+| ||||||||||||+|+|+|+++|+...+.. .......|+.|+|+++|..|+... ....+.|..|+.+
T Consensus 1 rGl~N~g--ntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~~~~l~~ 75 (328)
T cd02660 1 RGLINLG--ATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG---DRSPYGPINLLYL 75 (328)
T ss_pred CCccccC--cchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC---CCCCcCHHHHHHH
Confidence 6999999 59999999999999999999999865432 223345699999999999996332 3467899999999
Q ss_pred HhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCC
Q 000344 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1630)
Q Consensus 1379 L~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1630)
++...+. |.++.||||||||.+|||.||+++........ ......++|+++|+|.+.++++|..|
T Consensus 76 ~~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~------------~~~~~~~~i~~~F~g~~~~~~~C~~C 140 (328)
T cd02660 76 SWKHSRN---LAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN------------DESHCNCIIHQTFSGSLQSSVTCQRC 140 (328)
T ss_pred HHhhchh---hcccccccHHHHHHHHHHHHHHHhhccccccc------------ccccCCceeEEecccEEEeeeEcCCC
Confidence 8877665 88999999999999999999998765322100 01122578999999999999999999
Q ss_pred Ccccccccccceeee-cchhhhhhh------hhhcccCCHHHHHHHHhcccc-----cccCCCCCCcCcc--ceEEEEee
Q 000344 1459 GLESRHLKYTSFFHN-INASALRTM------KVMCAESSLDELLNLVEMNHQ-----LACDPGAGGCEKL--NYIHHILS 1524 (1630)
Q Consensus 1459 g~~S~~~e~~sf~~l-I~~~~l~~~------~~~~~~~SL~dlLk~~~~~e~-----~~Cd~~c~~C~k~--~~kq~~Is 1524 (1630)
++.+.. +++|+.+ ++....... .......+|+++|+.++..+. |.|+ .|++. ..++..|.
T Consensus 141 ~~~s~~--~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~----~C~~~~~~~~~~~i~ 214 (328)
T cd02660 141 GGVSTT--VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCS----GCGSTQEATKQLSIK 214 (328)
T ss_pred CCccce--ecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCC----CCCCccceEEEEEec
Confidence 999887 4556544 222111000 001234799999999876543 3564 68877 34578899
Q ss_pred cCCCeEEEEEEecCCCc--cccccccccccccceecccccccc----------CCCCCceEEEEEEEEeC----CeEEEE
Q 000344 1525 TPPHVFTTVLGWQNTCE--SFDDITATLAALSPEIDISILYRG----------LDPKRRHSLVSVVCYYG----QHYHCF 1588 (1630)
Q Consensus 1525 rlP~VLiIhLkr~~~~~--~~~KI~~~v~~fP~~LDLs~~~~g----------~~~~~~Y~L~AVVvH~G----GHY~Ay 1588 (1630)
++|+||+|||+||.... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||
T Consensus 215 ~lP~~Lii~lkRf~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~ 293 (328)
T cd02660 215 KLPPVLCFQLKRFEHSLNKTSRKIDTYVQ-FPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAY 293 (328)
T ss_pred CCCceeEEEEEeEEecCCCCCcCCCcEEe-CCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEE
Confidence 99999999999887543 3467776655 9999999998763 23467999999999999 999999
Q ss_pred EEeCCCCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1589 AYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1589 vR~~~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
+|.. +++||+|||+.|+++ ++++|+.. +++||+
T Consensus 294 ~~~~-~~~W~~~nD~~V~~~-~~~~v~~~------~ayil~ 326 (328)
T cd02660 294 CRQG-DGQWFKFDDAMITRV-SEEEVLKS------QAYLLF 326 (328)
T ss_pred EECC-CCcEEEEECCeeEEC-CHHHhcCC------CcEEEE
Confidence 9954 389999999999998 56788753 687774
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=390.94 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=221.3
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCC-cccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHh
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-IHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALS 1380 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~-~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~ 1380 (1630)
||.|+| ||||||||||+|+|+|+|+++++....... ......+++++|+.||..|+.. ...++|..|...++
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~i~p~~~~~~l~ 73 (305)
T cd02657 1 GLTNLG--NTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK-----QEPVPPIEFLQLLR 73 (305)
T ss_pred Cccccc--chhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC-----CCcCCcHHHHHHHH
Confidence 899999 599999999999999999999998654321 2233458999999999999853 24799999999999
Q ss_pred hhCCCCccc---cccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccC
Q 000344 1381 NLYPDSNFF---QEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1630)
Q Consensus 1381 ki~p~~~~F---~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1630)
..++..... ..++||||||||..|||.|++++... ....++|+++|+|.+.+.++|..
T Consensus 74 ~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------------------~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 74 MAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------------------GSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred HHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc-------------------CCCCcHHHHhhceEEEEEEEcCC
Confidence 988772111 45589999999999999999987541 11356799999999999999999
Q ss_pred CC-cccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhcccc-cccCCCCCCcCcc--ceEEEEeecCCCeEEE
Q 000344 1458 CG-LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ-LACDPGAGGCEKL--NYIHHILSTPPHVFTT 1532 (1630)
Q Consensus 1458 Cg-~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e~-~~Cd~~c~~C~k~--~~kq~~IsrlP~VLiI 1532 (1630)
|+ ..+.+ +++|..+ ++.... ....+++++|+.++.++. ..|+ .|+.. ..++..|.++|+||+|
T Consensus 135 C~~~~~~~--~e~f~~Lsl~i~~~------~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~k~~~i~~lP~vLii 202 (305)
T cd02657 135 SPDEEEVS--TESEYKLQCHISIT------TEVNYLQDGLKKGLEEEIEKHSP----TLGRDAIYTKTSRISRLPKYLTV 202 (305)
T ss_pred CCCCCccc--cccceEEEeecCCC------cccccHHHHHHHhhhhhhhhcCc----ccCCCceEEEEEEeccCCcEEEE
Confidence 99 66665 4455544 222100 012578999987765443 3554 46554 3468899999999999
Q ss_pred EEEecCCC---ccccccccccccccceeccccccccCCCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCc
Q 000344 1533 VLGWQNTC---ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1630)
Q Consensus 1533 hLkr~~~~---~~~~KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs~ 1604 (1630)
||+||... ....|+...+. ||..|||++|+. ....|+|+|||+|.| |||+||+|...++.||.|||+.
T Consensus 203 ~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~---~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~ 278 (305)
T cd02657 203 QFVRFFWKRDIQKKAKILRKVK-FPFELDLYELCT---PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDK 278 (305)
T ss_pred EEECCccccccCceeecCcEEE-CCceEecccccC---CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCc
Confidence 99988643 33467777765 999999999886 457999999999999 9999999976559999999999
Q ss_pred ceEeCCHHHHHHHhhcCC-CcccccC
Q 000344 1605 VKVVGSWSDVLSMCERGH-LQPQKHD 1629 (1630)
Q Consensus 1605 Vt~Vsswe~Vl~~c~~~~-~QP~vl~ 1629 (1630)
|+.|+ .++|+...+.+. -.++||+
T Consensus 279 V~~~~-~~~v~~~~~~~~~~~aYiL~ 303 (305)
T cd02657 279 VSEVT-EEDILKLSGGGDWHIAYILL 303 (305)
T ss_pred eEEeC-HHHHHhhcCCCCCceEEEEE
Confidence 99996 588988766554 4778774
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=394.83 Aligned_cols=270 Identities=20% Similarity=0.292 Sum_probs=214.9
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc---------cCCchHHHHHHHHHHHHhhccCCCCCcccCc
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---------VGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~---------~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP 1372 (1630)
||.|+|| ||||||+||+|+|+|+||++++......... ....+++++|+.||..|+.+ ....++|
T Consensus 1 GL~NlGn--TCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~----~~~~i~p 74 (324)
T cd02668 1 GLKNLGA--TCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG----NRSVVDP 74 (324)
T ss_pred CcccCCc--eeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC----CCceECh
Confidence 8999995 9999999999999999999999865432110 12358999999999999864 4578999
Q ss_pred HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEE
Q 000344 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1630)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~ 1452 (1630)
..|..++. |..++||||+|||.+|||.||+++..... ....++|+++|+|.+.++
T Consensus 75 ~~f~~~l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 75 SGFVKALG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred HHHHHHhC--------CCCccccCHHHHHHHHHHHHHHHHhhccC-----------------CcccchhhhhcceEEEEE
Confidence 99988773 56779999999999999999998764211 112568999999999999
Q ss_pred EEccCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEEEe
Q 000344 1453 MNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHIL 1523 (1630)
Q Consensus 1453 i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~~I 1523 (1630)
++|..|+..+.. +++|+.+ ++.. +..+|+++|+.|+..+ .|.|+ .|+++ ..++..|
T Consensus 130 ~~C~~C~~~s~~--~e~f~~l~l~i~---------~~~sl~~~L~~~~~~e~l~g~~~~~C~----~C~~~~~a~k~~~i 194 (324)
T cd02668 130 TQCSKCGRESSL--PSKFYELELQLK---------GHKTLEECIDEFLKEEQLTGDNQYFCE----SCNSKTDATRRIRL 194 (324)
T ss_pred EEeCCCCCcccc--ccccEEEEEEec---------ccCCHHHHHHHhhCceecCCCccccCC----CCCceeeeEEEEEe
Confidence 999999998876 5566654 2221 1368999999887544 46665 68876 3467889
Q ss_pred ecCCCeEEEEEEecCCC---ccccccccccccccceeccccccccC-CCCCceEEEEEEEEeC-----CeEEEEEEeCCC
Q 000344 1524 STPPHVFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQ 1594 (1630)
Q Consensus 1524 srlP~VLiIhLkr~~~~---~~~~KI~~~v~~fP~~LDLs~~~~g~-~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~ 1594 (1630)
.++|+||+|||+||... ....|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|+..+
T Consensus 195 ~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~-fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~ 273 (324)
T cd02668 195 TTLPPTLNFQLLRFVFDRKTGAKKKLNASIS-FPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT 273 (324)
T ss_pred cCCCCeEEEEEEcceeecccCcceeCCcEEE-CCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence 99999999999987642 33467877765 99999999998543 4567999999999999 999999997667
Q ss_pred CcEEEEeCCcceEeCCHHHHHHHhh
Q 000344 1595 ERWIMYDDKTVKVVGSWSDVLSMCE 1619 (1630)
Q Consensus 1595 ~~W~~FDDs~Vt~Vsswe~Vl~~c~ 1619 (1630)
++||+|||+.|++| +++.|....+
T Consensus 274 ~~W~~fdD~~V~~i-~~~~~~~~~~ 297 (324)
T cd02668 274 GEWYKFNDEDVEEM-PGKPLKLGNS 297 (324)
T ss_pred CcEEEEECCceEEc-CHHHhhcccc
Confidence 89999999999998 5677766544
No 8
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-40 Score=389.71 Aligned_cols=287 Identities=23% Similarity=0.356 Sum_probs=227.5
Q ss_pred cccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHH
Q 000344 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1630)
Q Consensus 1300 ~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL 1379 (1630)
|+||.|+|| |||||||||+|+|+|+|+++++......+......|+.|+|+.+|..+..+ ....+.|..|..++
T Consensus 1 ~~GL~N~gn--tCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~p~~~~~~l 74 (304)
T cd02661 1 GAGLQNLGN--TCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS----SGPGSAPRIFSSNL 74 (304)
T ss_pred CCCccccCc--hhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhC----CCCccChHHHHHHH
Confidence 689999994 999999999999999999999876544344445569999999999998854 45688999999999
Q ss_pred hhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCC
Q 000344 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1630)
Q Consensus 1380 ~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1630)
..+.+. |..+.||||+|||.+|||.||+++......... . .......++|+++|+|++.++++|..|+
T Consensus 75 ~~~~~~---f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~----~-----~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 142 (304)
T cd02661 75 KQISKH---FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA----V-----DPSSQETTLVQQIFGGYLRSQVKCLNCK 142 (304)
T ss_pred HHHHHh---hcCcchhhHHHHHHHHHHHHHHHHhhhcccccc----c-----CccccCCChhhhcCCcEEeeeEEeCCCC
Confidence 988765 999999999999999999999986543221100 0 0112246789999999999999999999
Q ss_pred cccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCccc--eEEEEeecCCCeE
Q 000344 1460 LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHILSTPPHVF 1530 (1630)
Q Consensus 1460 ~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~~--~kq~~IsrlP~VL 1530 (1630)
..+.+ ++.|..+ ++.. ...++.++|+.++..+ .|.|+ .|++.. .++..|.++|++|
T Consensus 143 ~~s~~--~e~~~~l~l~i~---------~~~~l~~~l~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~~P~iL 207 (304)
T cd02661 143 HVSNT--YDPFLDLSLDIK---------GADSLEDALEQFTKPEQLDGENKYKCE----RCKKKVKASKQLTIHRAPNVL 207 (304)
T ss_pred CCcCc--cccceeeeeecC---------CCCcHHHHHHHhcCceeeCCCCCeeCC----CCCCccceEEEEEEecCCcEE
Confidence 99876 4555443 2211 1258999999887543 35564 688774 4577899999999
Q ss_pred EEEEEecCCCccccccccccccccceecccccccc-CCCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCc
Q 000344 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1630)
Q Consensus 1531 iIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~~g-~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs~ 1604 (1630)
+|||+|+... ...|+...+. ||..|||.+|+.. ......|+|+|||+|.| |||+||+|. .+++||+|||..
T Consensus 208 ~i~l~Rf~~~-~~~Ki~~~v~-f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~ 284 (304)
T cd02661 208 TIHLKRFSNF-RGGKINKQIS-FPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSK 284 (304)
T ss_pred EEEEeccccC-CccccCCeEe-cCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCe
Confidence 9999998875 4568887765 9999999998875 55678999999999999 999999996 368999999999
Q ss_pred ceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1605 VKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1605 Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
|++| ++++|+.. +++||+
T Consensus 285 V~~v-~~~~v~~~------~aYil~ 302 (304)
T cd02661 285 VSPV-SIETVLSQ------KAYILF 302 (304)
T ss_pred eEEC-CHHHhcCC------CcEEEE
Confidence 9998 77888753 777764
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-40 Score=394.88 Aligned_cols=280 Identities=19% Similarity=0.255 Sum_probs=209.7
Q ss_pred cCCCCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHH---HHhhccCCCCC
Q 000344 1291 ENVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFT---ALSIASTDTRK 1367 (1630)
Q Consensus 1291 ~ssng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~---~L~~ss~~~~~ 1367 (1630)
+..-......+||.|+|| |||||||||||+|+|+||+.+.+..... .....++.+|. .++.. ..
T Consensus 15 ~~~~~~~~~~~GL~NlGn--TCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~----~~ 81 (332)
T cd02671 15 CEKRENLLPFVGLNNLGN--TCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYND----EL 81 (332)
T ss_pred ccccccCCCCcceeccCc--eEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhh----cc
Confidence 333334567899999995 9999999999999999999987653110 11223333332 23221 22
Q ss_pred cccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCccccccccee
Q 000344 1368 EAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGM 1447 (1630)
Q Consensus 1368 ~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G 1447 (1630)
....|..|+.+++...|. |..+.||||||||.+|||.||. +|+++|+|
T Consensus 82 ~~~~P~~~~~~l~~~~~~---f~~~~QQDA~EFl~~LLd~L~~-----------------------------~i~~~F~g 129 (332)
T cd02671 82 ANQAPRRLLNALREVNPM---YEGYLQHDAQEVLQCILGNIQE-----------------------------LVEKDFQG 129 (332)
T ss_pred cccCHHHHHHHHHHhccc---cCCccccCHHHHHHHHHHHHHH-----------------------------HHHhhhce
Confidence 356799999999988776 8999999999999999999984 35789999
Q ss_pred EEEEEEEccCCCcccccccccceeee-cchhhhh--hhh--------hhcccCCHHHHHHHHhcc------cccccCCCC
Q 000344 1448 DIFERMNCYSCGLESRHLKYTSFFHN-INASALR--TMK--------VMCAESSLDELLNLVEMN------HQLACDPGA 1510 (1630)
Q Consensus 1448 ~l~s~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~--~~~--------~~~~~~SL~dlLk~~~~~------e~~~Cd~~c 1510 (1630)
.+.++++|..|+..+.+ ++.|+++ ++..... ... ......+|+++|+.|+.. ++|.|+
T Consensus 130 ~~~~~~~C~~C~~~s~~--~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~--- 204 (332)
T cd02671 130 QLVLRTRCLECETFTER--REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCE--- 204 (332)
T ss_pred EEEEEEEeCCCCCeece--ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCC---
Confidence 99999999999999887 6677765 3322110 000 001235899999998744 457776
Q ss_pred CCcCcc--ceEEEEeecCCCeEEEEEEecCCC-------ccccccccccccccceeccccccccCCCCCceEEEEEEEEe
Q 000344 1511 GGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-------ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYY 1581 (1630)
Q Consensus 1511 ~~C~k~--~~kq~~IsrlP~VLiIhLkr~~~~-------~~~~KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~ 1581 (1630)
.|+++ +.++..|.++|+||+|||+||... +...||+..+. ||..|||.++..+ .....|+|+|||+|.
T Consensus 205 -~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~-~~~~~Y~L~~VI~H~ 281 (332)
T cd02671 205 -NCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLL-TPLKLSLEEWSTK-PKNDVYRLFAVVMHS 281 (332)
T ss_pred -CCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCcccc-CccccccccccCC-CCCCeEEEEEEEEEc
Confidence 58766 446788999999999999998853 23568887765 9999999876543 346799999999999
Q ss_pred C-----CeEEEEEEeCCCCcEEEEeCCcceEeC--CHHHHHHHhhcCCCcccccC
Q 000344 1582 G-----QHYHCFAYSHDQERWIMYDDKTVKVVG--SWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1582 G-----GHY~AyvR~~~~~~W~~FDDs~Vt~Vs--swe~Vl~~c~~~~~QP~vl~ 1629 (1630)
| |||+|||| ||+|||+.|+.++ +|.++...+..+..+|+||+
T Consensus 282 G~~~~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLf 330 (332)
T cd02671 282 GATISSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLF 330 (332)
T ss_pred CCCCCCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEE
Confidence 9 99999999 9999999999985 33334455677889999986
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-39 Score=387.16 Aligned_cols=266 Identities=21% Similarity=0.351 Sum_probs=206.0
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHH-HHHHHh
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS-LRIALS 1380 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~-L~~aL~ 1380 (1630)
||.|+| |||||||+||||+++|+||+++++..... .....++.++|+.+|..|... ...++.|.. +..++.
T Consensus 1 GL~NlG--nTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~----~~~~~~~~~~~l~~~~ 72 (327)
T cd02664 1 GLINLG--NTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHT----QRRAEAPPDYFLEASR 72 (327)
T ss_pred CCcCCc--ccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhc----CCcccCCHHHHHHHhc
Confidence 899999 59999999999999999999999876421 223457889999999988754 334666765 544432
Q ss_pred hhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCc
Q 000344 1381 NLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGL 1460 (1630)
Q Consensus 1381 ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~ 1460 (1630)
.+ .|..+.||||||||.+|||.|+. +|.++|+|++.++++|..|+.
T Consensus 73 --~~---~f~~~~QqDa~EFl~~lLd~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~ 118 (327)
T cd02664 73 --PP---WFTPGSQQDCSEYLRYLLDRLHT-----------------------------LIEKMFGGKLSTTIRCLNCNS 118 (327)
T ss_pred --cc---ccCCCCcCCHHHHHHHHHHHHHH-----------------------------HHHhhCcEEeEeEEEcCCCCC
Confidence 22 38889999999999999999992 367899999999999999999
Q ss_pred ccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhcc------cccccCCCCCCcCcc--ceEEEEeecCCCeEE
Q 000344 1461 ESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEKL--NYIHHILSTPPHVFT 1531 (1630)
Q Consensus 1461 ~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~------e~~~Cd~~c~~C~k~--~~kq~~IsrlP~VLi 1531 (1630)
.+.+ ++.|..+ ++. .+++++|+.|... +.|.|+ .|+++ ..++..|.++|+||+
T Consensus 119 ~s~~--~e~f~~l~L~i------------~sl~~~l~~~~~~E~l~g~n~~~C~----~C~~~~~a~k~~~i~~lP~vLi 180 (327)
T cd02664 119 TSAR--TERFRDLDLSF------------PSVQDLLNYFLSPEKLTGDNQYYCE----KCASLQDAEKEMKVTGAPEYLI 180 (327)
T ss_pred Eecc--cccceeeecCC------------CCHHHHHHHhcCeeEccCCCceeCC----ccCCccceeEEEEcccCChhhE
Confidence 8876 4455443 221 1688999888643 357786 58766 456889999999999
Q ss_pred EEEEecCCC---ccccccccccccccceecccccccc--------------------CCCCCceEEEEEEEEeC-----C
Q 000344 1532 TVLGWQNTC---ESFDDITATLAALSPEIDISILYRG--------------------LDPKRRHSLVSVVCYYG-----Q 1583 (1630)
Q Consensus 1532 IhLkr~~~~---~~~~KI~~~v~~fP~~LDLs~~~~g--------------------~~~~~~Y~L~AVVvH~G-----G 1583 (1630)
|||+||... ....||.+.+. ||..|||..+... ..+...|+|+|||+|.| |
T Consensus 181 i~LkRF~~~~~~~~~~Ki~~~v~-fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~G 259 (327)
T cd02664 181 LTLLRFSYDQKTHVREKIMDNVS-INEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESG 259 (327)
T ss_pred EEeeeeEEccccCcceecCceEe-cCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCc
Confidence 999988642 23468888876 9999999887521 12457999999999999 9
Q ss_pred eEEEEEEeCC--------------------CCcEEEEeCCcceEeCCHHHHHHHhhc-CCCcccccC
Q 000344 1584 HYHCFAYSHD--------------------QERWIMYDDKTVKVVGSWSDVLSMCER-GHLQPQKHD 1629 (1630)
Q Consensus 1584 HY~AyvR~~~--------------------~~~W~~FDDs~Vt~Vsswe~Vl~~c~~-~~~QP~vl~ 1629 (1630)
||+||+|... .+.||+|||+.|+.| ++++|+..-+. ..-.|+||+
T Consensus 260 HY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~-~~~~v~~~~~~~~~~~aYlLf 325 (327)
T cd02664 260 HYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFS-SFESVQNVTSRFPKDTPYILF 325 (327)
T ss_pred ceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEEC-CHHHHHHhhCCCCCCCEEEEE
Confidence 9999999643 378999999999998 57888873322 234778775
No 11
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-39 Score=400.06 Aligned_cols=283 Identities=19% Similarity=0.224 Sum_probs=212.9
Q ss_pred cccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1630)
Q Consensus 1298 ~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~ 1377 (1630)
.+.+||.|+|| |||||||||||+|+|+||++|+.............++.++|..+|+.++.... .+..++|..|..
T Consensus 117 ~G~vGL~NlGn--TCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~--~~~~isP~~fl~ 192 (440)
T cd02669 117 PGFVGLNNIKN--NDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRN--FKGHVSPHELLQ 192 (440)
T ss_pred CCccCccCCCC--chHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhcccc--CCCccCHHHHHH
Confidence 35699999995 99999999999999999999998654321112345899999999999985421 357899999999
Q ss_pred HHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccC
Q 000344 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1630)
Q Consensus 1378 aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1630)
++....+ ..|..+.||||||||.+|||.||+++.... ....++|+++|+|++.+.++|..
T Consensus 193 ~l~~~~~--~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------------------~~~~~ii~~~F~G~l~~~~~c~~ 252 (440)
T cd02669 193 AVSKVSK--KKFSITEQSDPVEFLSWLLNTLHKDLGGSK------------------KPNSSIIHDCFQGKVQIETQKIK 252 (440)
T ss_pred HHHhhcc--cccCCcccCCHHHHHHHHHHHHHHHhccCC------------------CCCCCcceeccCceEEEEEEeec
Confidence 9987643 358899999999999999999999876421 12368999999999999999886
Q ss_pred CCccc-------------ccccccceeee---cchhhhh---hhhhhcccCCHHHHHHHHhcccccccCCCCCCcCcc--
Q 000344 1458 CGLES-------------RHLKYTSFFHN---INASALR---TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKL-- 1516 (1630)
Q Consensus 1458 Cg~~S-------------~~~e~~sf~~l---I~~~~l~---~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~-- 1516 (1630)
|...+ ....+++|+.+ |+..... ......+..+++++|+.|. |+ .|...
T Consensus 253 ~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~------~~----~c~~~~~ 322 (440)
T cd02669 253 PHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD------GK----TETELKD 322 (440)
T ss_pred ccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcC------Cc----cceeccc
Confidence 65321 11124566655 3322111 0122345678999997654 43 24332
Q ss_pred ceEEEEeecCCCeEEEEEEecCCCccc-cccccccccccce-eccccccc----cCCCCCceEEEEEEEEeC-----CeE
Q 000344 1517 NYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPE-IDISILYR----GLDPKRRHSLVSVVCYYG-----QHY 1585 (1630)
Q Consensus 1517 ~~kq~~IsrlP~VLiIhLkr~~~~~~~-~KI~~~v~~fP~~-LDLs~~~~----g~~~~~~Y~L~AVVvH~G-----GHY 1585 (1630)
..++..|.++|+||+|||+||...... .|+. +.+.||.. |||++|+. +......|+|+|||+|.| |||
T Consensus 323 a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~-t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY 401 (440)
T cd02669 323 SLKRYLISRLPKYLIFHIKRFSKNNFFKEKNP-TIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTW 401 (440)
T ss_pred ceEEEEEeeCCcEEEEEEecccCCCCccccCC-CEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeE
Confidence 467899999999999999999865433 4554 44569997 89999984 334568999999999999 999
Q ss_pred EEEEEeCCCCcEEEEeCCcceEeCCHHHHHH
Q 000344 1586 HCFAYSHDQERWIMYDDKTVKVVGSWSDVLS 1616 (1630)
Q Consensus 1586 ~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl~ 1616 (1630)
+||+|+..+|+||.|||+.|++++ .+.|+.
T Consensus 402 ~a~v~~~~~~~W~~fdD~~V~~v~-~~~v~~ 431 (440)
T cd02669 402 RVQLRHKSTNKWFEIQDLNVKEVL-PQLIFL 431 (440)
T ss_pred EEEEEcCCCCeEEEEECCeeeEcC-HHHhcc
Confidence 999997668999999999999984 566654
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-39 Score=379.25 Aligned_cols=237 Identities=24% Similarity=0.372 Sum_probs=188.9
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~k 1381 (1630)
||.|+| ||||||||||+|+|+|+||++|+. +|..|+..+..
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~ 41 (279)
T cd02667 1 GLSNLG--NTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCR 41 (279)
T ss_pred CCcCCC--CchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHH
Confidence 899999 599999999999999999999987 34445555554
Q ss_pred hCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcc
Q 000344 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1630)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1630)
..+. |..++||||+|||..|||.|+. +|+++|+|++.++++|..|+..
T Consensus 42 ~~~~---f~~~~QqDA~Efl~~lld~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~~ 89 (279)
T cd02667 42 KAPQ---FKGYQQQDSHELLRYLLDGLRT-----------------------------FIDSIFGGELTSTIMCESCGTV 89 (279)
T ss_pred hhHh---hcCCchhhHHHHHHHHHHHHHH-----------------------------hhhhhcceEEEEEEEcCCCCCE
Confidence 4444 8889999999999999999992 3678999999999999999999
Q ss_pred cccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhcccc------cccCCCCCCcCccceEEEEeecCCCeEEEEE
Q 000344 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ------LACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534 (1630)
Q Consensus 1462 S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e~------~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhL 1534 (1630)
+.+ .+.|+.+ ++... ......+|++||+.|+..+. |.| ..|++ +.++..|.++|+||+|||
T Consensus 90 s~~--~E~f~~L~Lp~~~-----~~~~~~sL~~~L~~~~~~E~l~~~~~~~C----~~C~~-a~k~~~i~~~P~~Lii~L 157 (279)
T cd02667 90 SLV--YEPFLDLSLPRSD-----EIKSECSIESCLKQFTEVEILEGNNKFAC----ENCTK-AKKQYLISKLPPVLVIHL 157 (279)
T ss_pred eCc--cccceEEecCCCc-----ccCCCCCHHHHHHhhcCeeEecCCCcccC----CccCc-eeeEeEhhhCCCeEEEEE
Confidence 876 4566654 33210 11234789999999875543 555 46877 667889999999999999
Q ss_pred EecCCCc--cccccccccccccceecccccccc------CCCCCceEEEEEEEEeC----CeEEEEEEeCC---------
Q 000344 1535 GWQNTCE--SFDDITATLAALSPEIDISILYRG------LDPKRRHSLVSVVCYYG----QHYHCFAYSHD--------- 1593 (1630)
Q Consensus 1535 kr~~~~~--~~~KI~~~v~~fP~~LDLs~~~~g------~~~~~~Y~L~AVVvH~G----GHY~AyvR~~~--------- 1593 (1630)
+||.... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||+|...
T Consensus 158 kRF~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~ 236 (279)
T cd02667 158 KRFQQPRSANLRKVSRHVS-FPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLT 236 (279)
T ss_pred eccccCcccCceecCceEe-CCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccccccc
Confidence 9987643 3467777765 9999999999865 23467999999999999 99999999643
Q ss_pred ------------CCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1594 ------------QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1594 ------------~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
++.||+|||+.|++|+ .+.|+. -.|+||+
T Consensus 237 ~~~~~~~~~~~~~~~W~~~dD~~V~~v~-~~~v~~------~~aYiLf 277 (279)
T cd02667 237 KSKPAADEAGPGSGQWYYISDSDVREVS-LEEVLK------SEAYLLF 277 (279)
T ss_pred ccccccccCCCCCCcEEEEECCccEECC-HHHhcc------CCcEEEE
Confidence 6899999999999984 466764 2677774
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-39 Score=380.20 Aligned_cols=278 Identities=15% Similarity=0.228 Sum_probs=207.0
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCC--cccCCchHHHHHHHHHHHHhhccCC----------CCCcc
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTD----------TRKEA 1369 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~ss~~----------~~~~~ 1369 (1630)
||.|+| ||||||||||||+|+|+||++|+....... ......|+.++|+++|..|+..... ....+
T Consensus 1 GL~NlG--NTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLG--NSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCC--cchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999 599999999999999999999987332111 1122348999999999998753211 02457
Q ss_pred cCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEE
Q 000344 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDI 1449 (1630)
Q Consensus 1370 vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l 1449 (1630)
+.|..|+.+++..+|. |..+.||||||||.+|||.||+++... ....+.++|+|.+
T Consensus 79 i~p~~~~~~l~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------~~~~~~~~f~~~~ 134 (311)
T cd02658 79 IKPSMFKALIGKGHPE---FSTMRQQDALEFLLHLIDKLDRESFKN---------------------LGLNPNDLFKFMI 134 (311)
T ss_pred cCcHHHHHHHhccChh---hcccccccHHHHHHHHHHHHHHhhccc---------------------ccCCchhheEEEe
Confidence 9999999999988777 999999999999999999999987521 1234678999999
Q ss_pred EEEEEccCCCcccccccccceeee-cchhhhhhh-----hhhcccCCHHHHHHHHhccccc--ccCCCCCCcCcc--ceE
Q 000344 1450 FERMNCYSCGLESRHLKYTSFFHN-INASALRTM-----KVMCAESSLDELLNLVEMNHQL--ACDPGAGGCEKL--NYI 1519 (1630)
Q Consensus 1450 ~s~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~-----~~~~~~~SL~dlLk~~~~~e~~--~Cd~~c~~C~k~--~~k 1519 (1630)
.++++|..|+..+.. ++.+..+ ++....... .......+|+++|+.|...+.+ .|+ .|+++ ..+
T Consensus 135 ~~~i~C~~C~~~s~~--~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~----~C~~~~~a~k 208 (311)
T cd02658 135 EDRLECLSCKKVKYT--SELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCS----TCKEKTTATK 208 (311)
T ss_pred eEEEEcCCCCCEEEe--ecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccccccc----CCCCcccEEE
Confidence 999999999987765 3344333 222111100 0011346999999998876644 454 58766 456
Q ss_pred EEEeecCCCeEEEEEEecCCC--ccccccccccccccceeccccccccCCCCCceEEEEEEEEeC-----CeEEEEEEeC
Q 000344 1520 HHILSTPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSH 1592 (1630)
Q Consensus 1520 q~~IsrlP~VLiIhLkr~~~~--~~~~KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~ 1592 (1630)
+..|.++|+||+|||+||... ....|+...+. ||..| ....|+|+|||+|.| |||+||+|..
T Consensus 209 ~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~-~p~~l----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~ 277 (311)
T cd02658 209 TTGFKTFPDYLVINMKRFQLLENWVPKKLDVPID-VPEEL----------GPGKYELIAFISHKGTSVHSGHYVAHIKKE 277 (311)
T ss_pred EEEeecCCceEEEEeEEEEecCCCceEeeccccc-cCCcC----------CCCcEEEEEEEEccCCCCCCcceEEEEeCC
Confidence 888999999999999987662 23456666554 77655 346899999999999 9999999964
Q ss_pred --CCCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1593 --DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1593 --~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
.+++||.|||+.|++++.- +|+ .-+|+||+
T Consensus 278 ~~~~~~W~~fnD~~V~~~~~~-~~~------~~~~Yilf 309 (311)
T cd02658 278 IDGEGKWVLFNDEKVVASQDP-PEM------KKLGYIYF 309 (311)
T ss_pred CCCCCCEEEecCceeEECCcc-ccc------CCcceEEE
Confidence 2489999999999999763 342 44888875
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-38 Score=374.78 Aligned_cols=280 Identities=20% Similarity=0.294 Sum_probs=214.7
Q ss_pred cccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHH
Q 000344 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1630)
Q Consensus 1300 ~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL 1379 (1630)
.+||.|+|| ||||||+||+|+++|+|+++++..... .......++.++|+.||..|.... ...+.|..+. .+
T Consensus 2 ~~GL~N~Gn--tCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~----~~~~~~~~~~-~~ 73 (334)
T cd02659 2 YVGLKNQGA--TCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSE----SPVKTTELTD-KT 73 (334)
T ss_pred CCCcccCCc--chHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCC----ccccCcchhh-ee
Confidence 579999995 999999999999999999999986322 222345589999999999998653 2345554443 11
Q ss_pred hhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCC
Q 000344 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1630)
Q Consensus 1380 ~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1630)
.... ...|..+.||||+|||.+||+.|++++.... ..++|.++|+|.+...++|..|+
T Consensus 74 ~~~~--~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------~~~~i~~lF~g~~~~~~~C~~C~ 131 (334)
T cd02659 74 RSFG--WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG--------------------QEGLIKNLFGGKLVNYIICKECP 131 (334)
T ss_pred ccCC--CCCCCcccchhHHHHHHHHHHHHHHHhccCc--------------------ccchhhhhCceEEEeEEEecCCC
Confidence 1111 1237788999999999999999999875321 24578999999999999999999
Q ss_pred cccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEEEeecCCCeE
Q 000344 1460 LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVF 1530 (1630)
Q Consensus 1460 ~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~~IsrlP~VL 1530 (1630)
..+.. .+.|..+ ++.. +..+++++|+.|...+ .|.|+ .|+++ ..++..|.++|+||
T Consensus 132 ~~s~~--~e~f~~l~l~i~---------~~~~l~~~l~~~~~~e~l~~~~~~~C~----~C~~~~~~~k~~~i~~lP~vL 196 (334)
T cd02659 132 HESER--EEYFLDLQVAVK---------GKKNLEESLDAYVQGETLEGDNKYFCE----KCGKKVDAEKGVCFKKLPPVL 196 (334)
T ss_pred ceecc--cccceEEEEEcC---------CCCCHHHHHHHhcCeeEecCCccEecC----cCCCcccEEEEEEeecCCCEE
Confidence 88776 4455543 2221 1367899998887543 46775 58876 44578899999999
Q ss_pred EEEEEecCCC---ccccccccccccccceeccccccccC------------CCCCceEEEEEEEEeC----CeEEEEEEe
Q 000344 1531 TTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL------------DPKRRHSLVSVVCYYG----QHYHCFAYS 1591 (1630)
Q Consensus 1531 iIhLkr~~~~---~~~~KI~~~v~~fP~~LDLs~~~~g~------------~~~~~Y~L~AVVvH~G----GHY~AyvR~ 1591 (1630)
+|||+||... ....|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|.
T Consensus 197 ii~l~Rf~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~ 275 (334)
T cd02659 197 TLQLKRFEFDFETMMRIKINDRFE-FPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKD 275 (334)
T ss_pred EEEeeeeEEccccCcceeCCceEe-CCceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEEC
Confidence 9999987642 33456776655 99999999987532 2356899999999999 999999997
Q ss_pred CCCCcEEEEeCCcceEeCCHHHHHHHhhcCCCccc
Q 000344 1592 HDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQ 1626 (1630)
Q Consensus 1592 ~~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~ 1626 (1630)
..+++||.|||+.|++| ++++|+..|..++-.|.
T Consensus 276 ~~~~~W~~~nD~~V~~i-~~~~v~~~~~g~~~~~~ 309 (334)
T cd02659 276 RDDGKWYKFNDDVVTPF-DPNDAEEECFGGEETQK 309 (334)
T ss_pred CCCCceEEEeCcccEEC-CHHHHHHHcCCCccccc
Confidence 66799999999999998 57999999988876554
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-39 Score=378.47 Aligned_cols=302 Identities=22% Similarity=0.333 Sum_probs=230.5
Q ss_pred cccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCC-----chHHHHHHHHHHHHhhccCCCCCcccCc
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGE-----PCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1630)
Q Consensus 1298 ~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~-----~cv~~aL~~LF~~L~~ss~~~~~~~vsP 1372 (1630)
++.+||.|+| |||||||.||||.||+.+|+||+...+..+.+.++ ..++.++++|++++... ...++.|
T Consensus 263 ~GtcGL~NlG--NTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~----~~haf~P 336 (823)
T COG5560 263 AGTCGLRNLG--NTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG----NLHAFTP 336 (823)
T ss_pred ccccceecCC--cceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc----cccccCh
Confidence 4678999999 59999999999999999999999977654444433 37888999999998843 5689999
Q ss_pred HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcc----------cccccCCCCccC--CCccc
Q 000344 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTES----------VESNCMGSWDCT--NSACI 1440 (1630)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es----------~es~~~gsw~~~--~~~Si 1440 (1630)
..|+..++.++.. |.+++|||+|||+.+|||.||+.++.....+..+. ....+...|... .+.|+
T Consensus 337 s~fK~tIG~fn~~---fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSi 413 (823)
T COG5560 337 SGFKKTIGSFNEE---FSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSI 413 (823)
T ss_pred HHHHHHHhhhHHH---hcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 9999999998755 99999999999999999999999974322111110 011122335433 36899
Q ss_pred ccccceeEEEEEEEccCCCcccccccccceeee---cchh----------------------------------------
Q 000344 1441 VHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---INAS---------------------------------------- 1477 (1630)
Q Consensus 1441 I~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~l---I~~~---------------------------------------- 1477 (1630)
|+++|.|.+++++.|..|+.+|.+ |++|+++ +|..
T Consensus 414 ItdLFqgmyKSTL~Cp~C~~vsit--fDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~ 491 (823)
T COG5560 414 ITDLFQGMYKSTLTCPGCGSVSIT--FDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491 (823)
T ss_pred HHHHHHHHhhceeeccCcCceeee--ecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHh
Confidence 999999999999999999999876 4454433 1000
Q ss_pred --------------------------------------------------------------------------------
Q 000344 1478 -------------------------------------------------------------------------------- 1477 (1630)
Q Consensus 1478 -------------------------------------------------------------------------------- 1477 (1630)
T Consensus 492 gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~ 571 (823)
T COG5560 492 GKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIK 571 (823)
T ss_pred ccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecc
Confidence
Q ss_pred -h----h--------h----------------------------------------------------------------
Q 000344 1478 -A----L--------R---------------------------------------------------------------- 1480 (1630)
Q Consensus 1478 -~----l--------~---------------------------------------------------------------- 1480 (1630)
. + .
T Consensus 572 ~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek 651 (823)
T COG5560 572 ASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEK 651 (823)
T ss_pred hhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeecccc
Confidence 0 0 0
Q ss_pred ---------------hhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEEEeecCCCeEEEEEEec
Q 000344 1481 ---------------TMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQ 1537 (1630)
Q Consensus 1481 ---------------~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~~IsrlP~VLiIhLkr~ 1537 (1630)
.+....+.++|+|||..|.+.+ .|+|+ +|+.. ++||..|+++|.||+|||+||
T Consensus 652 ~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCp----gCkefrqasKqmelwrlP~iLiihLkRF 727 (823)
T COG5560 652 RYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCP----GCKEFRQASKQMELWRLPMILIIHLKRF 727 (823)
T ss_pred chhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCC----chHhhhhhhhhhhhhcCChheeeehhhh
Confidence 0000014568999999887544 56886 68765 678999999999999999998
Q ss_pred CCCcc-ccccccccccccce-eccccccc-cCCCCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCC
Q 000344 1538 NTCES-FDDITATLAALSPE-IDISILYR-GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGS 1610 (1630)
Q Consensus 1538 ~~~~~-~~KI~~~v~~fP~~-LDLs~~~~-g~~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vss 1610 (1630)
....+ ..||...+. ||.. |||+.+.. -.++...|+||||=.|+| |||+||+|+..+++||+|||+.|++|++
T Consensus 728 ss~rsfrdKiddlVe-yPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdp 806 (823)
T COG5560 728 SSVRSFRDKIDDLVE-YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDP 806 (823)
T ss_pred hhcccchhhhhhhhc-cccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCc
Confidence 86444 466666655 8875 99987633 245668999999999999 9999999988899999999999999987
Q ss_pred HHHHH
Q 000344 1611 WSDVL 1615 (1630)
Q Consensus 1611 we~Vl 1615 (1630)
-+.|-
T Consensus 807 ed~vt 811 (823)
T COG5560 807 EDSVT 811 (823)
T ss_pred ccccc
Confidence 66554
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=325.19 Aligned_cols=291 Identities=20% Similarity=0.305 Sum_probs=199.3
Q ss_pred ccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCC----CcccCCchHHHHHHHHHHHHhhccCCCCCcccCc
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE----HIHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1630)
Q Consensus 1297 ~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~----~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP 1372 (1630)
...+.||.|.| ||||||++||||+.+..+...|+...+.. +...+.+ ...+...|..+...-.......|+|
T Consensus 68 n~~p~GL~N~G--NtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~--g~~~~k~F~~l~~~~~~Hg~~sis~ 143 (415)
T COG5533 68 NLPPNGLRNKG--NTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKP--GSNAFKQFIALYETPGCHGPKSISP 143 (415)
T ss_pred ccCCccccccC--ceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCc--chhHHHHHHHHHhccccCCCcccch
Confidence 35689999999 59999999999999999998555433221 1112211 1223344444443322224567999
Q ss_pred HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCC-cccc------c-cc-----CCCCcc--CCC
Q 000344 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDT-ESVE------S-NC-----MGSWDC--TNS 1437 (1630)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~-es~e------s-~~-----~gsw~~--~~~ 1437 (1630)
..|+..++.+.+. |.+.+|||+|||+.++||.||+++......+.. +..+ . -+ .-.|.. ..+
T Consensus 144 ~nF~~i~~~~n~~---fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn 220 (415)
T COG5533 144 RNFIDILSGRNKL---FSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSN 220 (415)
T ss_pred HHHHHHHcccccc---ccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccc
Confidence 9999999988766 999999999999999999999999766432211 1100 0 00 112432 236
Q ss_pred cccccccceeEEEEEEEccCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCC
Q 000344 1438 ACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGA 1510 (1630)
Q Consensus 1438 ~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c 1510 (1630)
.|+|-++|.|+..++++|..|++.|++ |.+|..+ |++.... ...++||+..|. +.+.|.|+
T Consensus 221 ~S~v~~~f~gq~~srlqC~~C~~TStT--~a~fs~l~vp~~~v~-------~~~l~eC~~~f~~~e~L~g~d~W~Cp--- 288 (415)
T COG5533 221 KSLVAKTFFGQDKSRLQCEACNYTSTT--IAMFSTLLVPPYEVV-------QLGLQECIDRFYEEEKLEGKDAWRCP--- 288 (415)
T ss_pred hHHHHHHHhhhhhhhhhhhhcCCceeE--Eeccceeeeccchhe-------eecHHHHHHHhhhHHhhcCcccccCc---
Confidence 799999999999999999999999998 4455443 3332111 134889998876 46789997
Q ss_pred CCcCcc--ceEEEEeecCCCeEEEEEEecCCC-ccccccccccc---cccceecccccc-cc-CCCCCceEEEEEEEEeC
Q 000344 1511 GGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-ESFDDITATLA---ALSPEIDISILY-RG-LDPKRRHSLVSVVCYYG 1582 (1630)
Q Consensus 1511 ~~C~k~--~~kq~~IsrlP~VLiIhLkr~~~~-~~~~KI~~~v~---~fP~~LDLs~~~-~g-~~~~~~Y~L~AVVvH~G 1582 (1630)
+|+++ .+++..|.++|++||||+.||.-. ....+|..+.- .++.+....+.+ .| .-...+|.|+|||||.|
T Consensus 289 -kC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G 367 (415)
T COG5533 289 -KCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG 367 (415)
T ss_pred -hhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc
Confidence 48877 567899999999999999988621 11122222111 112221111111 11 12346999999999999
Q ss_pred ----CeEEEEEEeCCCCcEEEEeCCcceEeC
Q 000344 1583 ----QHYHCFAYSHDQERWIMYDDKTVKVVG 1609 (1630)
Q Consensus 1583 ----GHY~AyvR~~~~~~W~~FDDs~Vt~Vs 1609 (1630)
|||+++|+ .++.|+.|||+.|+.++
T Consensus 368 ~L~gGHY~s~v~--~~~~W~~~dDs~vr~~~ 396 (415)
T COG5533 368 TLNGGHYFSEVK--RSGTWNVYDDSQVRKGS 396 (415)
T ss_pred eecCceeEEeee--ecCceEEechhheeecc
Confidence 99999999 67999999999999986
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.8e-34 Score=322.53 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=162.8
Q ss_pred cccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhh
Q 000344 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1630)
Q Consensus 1302 GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~k 1381 (1630)
||.|+|| ||||||+||+|+|+|+||+++....
T Consensus 1 Gl~N~g~--tCy~ns~lQ~L~~~~~f~~~~~~~~---------------------------------------------- 32 (240)
T cd02662 1 GLVNLGN--TCFMNSVLQALASLPSLIEYLEEFL---------------------------------------------- 32 (240)
T ss_pred CCcCCCC--ccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------
Confidence 8999995 9999999999999999999886521
Q ss_pred hCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcc
Q 000344 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1630)
Q Consensus 1382 i~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1630)
.||||||||..||+.|+.. +.++|.|.+.++++|..|+..
T Consensus 33 -----------~QqDa~EFl~~ll~~l~~~-----------------------------i~~~F~g~~~~~i~C~~C~~~ 72 (240)
T cd02662 33 -----------EQQDAHELFQVLLETLEQL-----------------------------LKFPFDGLLASRIVCLQCGES 72 (240)
T ss_pred -----------hhcCHHHHHHHHHHHHHHh-----------------------------ccCccccEEEEEEEeCCCCCc
Confidence 7999999999999999931 457899999999999999998
Q ss_pred cccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhcccc---cccCCCCCCcCccceEEEEeecCCCeEEEEEEec
Q 000344 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ---LACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQ 1537 (1630)
Q Consensus 1462 S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e~---~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhLkr~ 1537 (1630)
+.. .+++|..+ ++..... .....+++++|+.|+.++. +.|+ .| +..|.++|+||+|||+||
T Consensus 73 s~~-~~e~f~~LsL~ip~~~----~~~~~sl~~~L~~~~~~E~l~~~~C~----~C------~~~i~~lP~vLii~LkRF 137 (240)
T cd02662 73 SKV-RYESFTMLSLPVPNQS----SGSGTTLEHCLDDFLSTEIIDDYKCD----RC------QTVIVRLPQILCIHLSRS 137 (240)
T ss_pred cCc-ceeeeeeeEecccccC----CCCCCCHHHHHHHhcCcccccCcCCC----CC------eEEeecCCcEEEEEEEEE
Confidence 763 24555544 2221110 0124689999999987664 5565 57 678999999999999988
Q ss_pred CCC--ccccccccccccccceeccccccccCCCCCceEEEEEEEEeC----CeEEEEEEeC-------------------
Q 000344 1538 NTC--ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSH------------------- 1592 (1630)
Q Consensus 1538 ~~~--~~~~KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G----GHY~AyvR~~------------------- 1592 (1630)
... ....|+...+. ||..| +...|+|+|||+|.| |||+||+|.+
T Consensus 138 ~~~~~~~~~K~~~~v~-fp~~l----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~ 206 (240)
T cd02662 138 VFDGRGTSTKNSCKVS-FPERL----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPS 206 (240)
T ss_pred EEcCCCceeeeccEEE-CCCcc----------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccC
Confidence 643 34467776654 88877 467999999999999 9999999965
Q ss_pred -CCCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1593 -DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1593 -~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
..+.||+|||+.|++| ++++|+. .-+++||+
T Consensus 207 ~~~~~W~~fnD~~V~~v-~~~~v~~-----~~~aY~Lf 238 (240)
T cd02662 207 STSHPWWRISDTTVKEV-SESEVLE-----QKSAYMLF 238 (240)
T ss_pred ccCCCEEEEechheEEe-CHHHHhh-----CCCEEEEE
Confidence 2489999999999998 5567751 22566664
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.6e-33 Score=319.34 Aligned_cols=251 Identities=23% Similarity=0.408 Sum_probs=193.3
Q ss_pred cccccCCCCCccccchHHHHHHHhhHHHHHHHhccCC-----CCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHH
Q 000344 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSP-----SEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS 1374 (1630)
Q Consensus 1300 ~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~-----~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~ 1374 (1630)
++||.|.| |||||||+||+|+++|+|+++++.... .........++.++|+.+|..|+... .....+.|..
T Consensus 1 ~~Gl~N~g--ntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~i~~~~ 76 (269)
T PF00443_consen 1 PVGLQNIG--NTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN--SSDSSISPSD 76 (269)
T ss_dssp --EESBSS--STHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC--SSSSEEHCHH
T ss_pred CCCcEeCC--CchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc--ccccceeecc
Confidence 58999999 599999999999999999999997511 11222333479999999999999651 1467999999
Q ss_pred HHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEE
Q 000344 1375 LRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMN 1454 (1630)
Q Consensus 1375 L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~ 1454 (1630)
|..++....+. |..+.||||+|||..||+.|++++..... .... . .......+++.++|++.+.+.+.
T Consensus 77 ~~~~l~~~~~~---~~~~~qqDa~E~l~~ll~~l~~~~~~~~~---~~~~-~-----~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 77 FINALSSINPS---FSNGEQQDAHEFLSFLLDWLDEEFNSSFK---RKSW-K-----NTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHCGG---GGSSSTEEHHHHHHHHHHHHHHHHTSCSS---HHHH-H-----HHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccc---cccccccchhhhhcccccccchhhccccc---cccc-c-----ccccccccccccccccccccccc
Confidence 99999998765 88999999999999999999999865321 0000 0 01122467889999999999999
Q ss_pred ccCCCcccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeEEEEE
Q 000344 1455 CYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534 (1630)
Q Consensus 1455 C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhL 1534 (1630)
|..|+.. +..|.++|++|+|+|
T Consensus 145 c~~c~~~----------------------------------------------------------~~~~~~~P~~L~i~l 166 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------------QSSISSLPPILIIQL 166 (269)
T ss_dssp ETTTTCE----------------------------------------------------------EEEEEEBBSEEEEEE
T ss_pred ccccccc----------------------------------------------------------ccccccccceeeecc
Confidence 9999766 567889999999999
Q ss_pred Eec---CCCcccccccccccccc-ceeccccccccCC----CCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeC
Q 000344 1535 GWQ---NTCESFDDITATLAALS-PEIDISILYRGLD----PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDD 1602 (1630)
Q Consensus 1535 kr~---~~~~~~~KI~~~v~~fP-~~LDLs~~~~g~~----~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDD 1602 (1630)
+|+ .......|+...+. || ..|||++++.... ....|+|+|||+|.| |||+||+|+...++|+.|||
T Consensus 167 ~R~~~~~~~~~~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD 245 (269)
T PF00443_consen 167 KRFEFDQETGRSKKINNPVE-FPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDD 245 (269)
T ss_dssp E-EEEESTSSEEEE--CEEB---SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEET
T ss_pred ccceeccccccccccccccc-cCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeC
Confidence 765 23334567777765 99 6999999886443 357999999999999 99999999876667999999
Q ss_pred CcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1603 KTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1603 s~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
+.|+++ +|++|+..| .-+|+||+
T Consensus 246 ~~v~~~-~~~~v~~~~---~~~~yll~ 268 (269)
T PF00443_consen 246 SRVTEV-SWEEVIKSS---NSTAYLLF 268 (269)
T ss_dssp TEEEEE-SHHHHCCGG---STCEEEEE
T ss_pred CceEEC-CHHHHhhcc---CCceEEEe
Confidence 999998 569998887 45777764
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-33 Score=328.98 Aligned_cols=283 Identities=18% Similarity=0.179 Sum_probs=196.9
Q ss_pred cccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCC-----c-----c--c--------CCchHHHHHHHHHHHHh
Q 000344 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-----I-----H--V--------GEPCVVCALYEIFTALS 1359 (1630)
Q Consensus 1300 ~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~-----~-----~--~--------~~~cv~~aL~~LF~~L~ 1359 (1630)
|+||.|+| |||||||+||+|+++|+||++++....... . . . ...+++++|+.||..|+
T Consensus 1 PvGL~NlG--NTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~ 78 (343)
T cd02666 1 PAGLDNIG--NTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLI 78 (343)
T ss_pred CCCcccCC--ceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 68999999 599999999999999999999998652110 0 0 0 11268999999999999
Q ss_pred hccCCCCCcccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcc
Q 000344 1360 IASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSAC 1439 (1630)
Q Consensus 1360 ~ss~~~~~~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~S 1439 (1630)
.+ ....+.|..+...+. | .||||+||+..||+.||.++......... +.. .......+
T Consensus 79 ~s----~~~~v~P~~~l~~l~--------~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~-~~~------~~~~~~~~ 136 (343)
T cd02666 79 HS----NTRSVTPSKELAYLA--------L---RQQDVTECIDNVLFQLEVALEPISNAFAG-PDT------EDDKEQSD 136 (343)
T ss_pred hC----CCCccCcHHHHHhcc--------c---cccchHHHHHHHHHHHHHHhcCccccccC-ccc------ccccchhh
Confidence 64 457899999866543 2 79999999999999999998764321110 000 01112468
Q ss_pred cccccceeEEEEEEEccCCC---cccccccccceeee-cchhhhh-hhhhhcccCCHHHHHHHHhcccccccCCCCCCcC
Q 000344 1440 IVHSLFGMDIFERMNCYSCG---LESRHLKYTSFFHN-INASALR-TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE 1514 (1630)
Q Consensus 1440 iI~~LF~G~l~s~i~C~~Cg---~~S~~~e~~sf~~l-I~~~~l~-~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~ 1514 (1630)
+|+++|+|++.+.++|..|+ ..+.+ .+.|+.+ ++..... +........+|.++|+.|+..+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~--~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------- 203 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTK--TERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------- 203 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccc--cceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------
Confidence 99999999999999999997 44444 5677766 3322100 00000123689999998875444
Q ss_pred ccceEEEEeecCCCeEEEEEEecCCCccccccccccccccceecccccccc-----------------------------
Q 000344 1515 KLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRG----------------------------- 1565 (1630)
Q Consensus 1515 k~~~kq~~IsrlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~~g----------------------------- 1565 (1630)
|.++|+||.|||+..........++++.. ||..+|..++..+
T Consensus 204 --------~~~~P~vl~~qlq~~~~~~~~~~~~dry~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (343)
T cd02666 204 --------LTKLPQRSQVQAQLAQPLQRELISMDRYE-LPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFD 274 (343)
T ss_pred --------hccCCHHHHHHHhhcccccchheeecccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999873222222223333332 4444443333211
Q ss_pred CCCCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1566 LDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1566 ~~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
......|+|+|||+|.| |||++|+|+..++.||+|||..|++|.. +.|+..-..+--.|++|+
T Consensus 275 ~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~-~ev~~~~~~~~~~pY~l~ 341 (343)
T cd02666 275 DLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPA-SEVFLFTLGNTATPYFLV 341 (343)
T ss_pred ccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecH-HHHhhcccCCCCCCEEEE
Confidence 01467899999999999 9999999987779999999999999976 555554344556888874
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=336.27 Aligned_cols=300 Identities=20% Similarity=0.309 Sum_probs=215.3
Q ss_pred CCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCc----ccCCchHHHHHHHHHHHHhhccCCCCCcc
Q 000344 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHI----HVGEPCVVCALYEIFTALSIASTDTRKEA 1369 (1630)
Q Consensus 1294 ng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~----~~~~~cv~~aL~~LF~~L~~ss~~~~~~~ 1369 (1630)
.-.....+||.|+| ||||||++||||+.|+.||..++...+.... ......+..++..++..++... ....
T Consensus 295 ~~~~~~~~GL~NlG--ntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~---~~~s 369 (653)
T KOG1868|consen 295 STDVFGCPGLRNLG--NTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH---GQFS 369 (653)
T ss_pred cccccCCceeccCC--cchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC---Ccee
Confidence 33456789999999 5999999999999999999888876432221 1222356667777777776542 4578
Q ss_pred cCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCC----CCCCcc----ccccc-----CCCCccC-
Q 000344 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSN----VSDTES----VESNC-----MGSWDCT- 1435 (1630)
Q Consensus 1370 vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~----~s~~es----~es~~-----~gsw~~~- 1435 (1630)
+.|..|+..+.++.+. |.++.|||||||+.+++|.||+++..... .+...+ ..... ...|.-.
T Consensus 370 ~~P~~f~~~~~~y~~~---~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~ 446 (653)
T KOG1868|consen 370 VLPRRFIRVLKRYSPN---FSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYL 446 (653)
T ss_pred cCcHHHHHHHhhcccc---cccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhc
Confidence 9999999999999887 88888999999999999999999976532 111000 00000 0113211
Q ss_pred -CCcccccccceeEEEEEEEccCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhc------ccccccC
Q 000344 1436 -NSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEM------NHQLACD 1507 (1630)
Q Consensus 1436 -~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~------~e~~~Cd 1507 (1630)
...+.|.++|.|++.+.++|..||+.|.+ |.+|..+ ++.... .......++.+|++.|+. ++.|.|+
T Consensus 447 ~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t--~~~f~~lslpIp~~---~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp 521 (653)
T KOG1868|consen 447 EEEDSKIGDLFVGQLKSYLKCQACGYTSTT--FETFTDLSLPIPKK---GFAGGKVSLEDCLSLFTKEEKLEGDEAWLCP 521 (653)
T ss_pred cccchHHHHHHHHHHHhheehhhcCCccee--eecceeeEEecccc---cccccccchHhhhccccchhhcccccccCCc
Confidence 13445899999999999999999999998 6666655 332211 122224679999998874 4567886
Q ss_pred CCCCCcCcc--ce--EEEEeecCCCeEEEEEEecCCCccccccccccccccce-eccccccc-cCCCCCceEEEEEEEEe
Q 000344 1508 PGAGGCEKL--NY--IHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPE-IDISILYR-GLDPKRRHSLVSVVCYY 1581 (1630)
Q Consensus 1508 ~~c~~C~k~--~~--kq~~IsrlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~-LDLs~~~~-g~~~~~~Y~L~AVVvH~ 1581 (1630)
.|+++ .+ ++..|.++|+||++||+||...........+.+.||.. .|+.++.. ..+....|+|+|||+|.
T Consensus 522 ----~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~ 597 (653)
T KOG1868|consen 522 ----RCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHS 597 (653)
T ss_pred ----cccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEecc
Confidence 58877 32 67899999999999999888754332333333457764 55655332 33334569999999999
Q ss_pred C----CeEEEEEEeCCCCcEEEEeCCcceEeCC
Q 000344 1582 G----QHYHCFAYSHDQERWIMYDDKTVKVVGS 1610 (1630)
Q Consensus 1582 G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vss 1610 (1630)
| |||||||+....+.|+.|||+.|+++++
T Consensus 598 Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~ 630 (653)
T KOG1868|consen 598 GTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISE 630 (653)
T ss_pred CcccCCceEEEEeecCCCceEEecCeeeecccc
Confidence 9 9999999976678999999999997654
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=4.9e-31 Score=296.82 Aligned_cols=191 Identities=23% Similarity=0.357 Sum_probs=145.3
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcccccccccceee
Q 000344 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1630)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~ 1472 (1630)
.||||+||+.+||+.|+. ++.++|+|.+.++++|..|+..+.. ++.|..
T Consensus 21 ~QqDa~Ef~~~ll~~l~~-----------------------------~i~~~F~~~~~~~~~C~~C~~~~~~--~e~~~~ 69 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS-----------------------------IIVDLFQGQLKSRLTCLTCGKTSTT--FEPFTY 69 (230)
T ss_pred hhhhHHHHHHHHHHHHhh-----------------------------hHHheeCCEEeCcEEcCCCcCCcce--ecceeE
Confidence 699999999999999991 3678999999999999999998876 445554
Q ss_pred e-cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEEEeecCCCeEEEEEEecCCC-cc
Q 000344 1473 N-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-ES 1542 (1630)
Q Consensus 1473 l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~~IsrlP~VLiIhLkr~~~~-~~ 1542 (1630)
+ ++..... ...+..+++++|+.++..+ .+.|+ .|++. ..++..|.++|++|+|||+|+... ..
T Consensus 70 l~l~ip~~~---~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~ 142 (230)
T cd02674 70 LSLPIPSGS---GDAPKVTLEDCLRLFTKEETLDGDNAWKCP----KCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGS 142 (230)
T ss_pred EEEeccccc---CCCCCCCHHHHHHHhcCccccCCCCceeCC----CCCCccceEEEEEEecCChhhEeEhhheecCCCC
Confidence 4 2211100 0023479999999877543 45665 57766 345778999999999999877653 33
Q ss_pred ccccccccccccc-eeccccccc--cCCCCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHHH
Q 000344 1543 FDDITATLAALSP-EIDISILYR--GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVL 1615 (1630)
Q Consensus 1543 ~~KI~~~v~~fP~-~LDLs~~~~--g~~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl 1615 (1630)
..|+...+. ||. .||+++|+. ......+|+|+|||+|.| |||+||+|...+++||+|||+.|++|+.++ |
T Consensus 143 ~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~-~- 219 (230)
T cd02674 143 TRKLTTPVT-FPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESS-V- 219 (230)
T ss_pred cccCCceEe-ccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHH-c-
Confidence 456666654 885 589988753 334567899999999999 999999996655999999999999997655 4
Q ss_pred HHhhcCCCcccccC
Q 000344 1616 SMCERGHLQPQKHD 1629 (1630)
Q Consensus 1616 ~~c~~~~~QP~vl~ 1629 (1630)
..-+|+||+
T Consensus 220 -----~~~~~YlL~ 228 (230)
T cd02674 220 -----VSSSAYILF 228 (230)
T ss_pred -----cCCCceEEE
Confidence 566888875
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-31 Score=315.76 Aligned_cols=308 Identities=13% Similarity=0.159 Sum_probs=211.4
Q ss_pred CcccccccCCCCCCCCCccccccccccchhHhhhHHHHHHHHHh-hhhcccccCCcccccccccccchhh-----h-ccc
Q 000344 1209 DSHLTGAAAPYLGDGGTKTLRQLHAEEDDEERFQADLKQAVRQS-LDTFQAHQKMPLVSSLRMTQNVSLE-----A-NKV 1281 (1630)
Q Consensus 1209 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~f~~dL~~av~~s-~~~~~~~~~~p~~~s~~~~~~~~~~-----~-~~~ 1281 (1630)
-|+.+++.+-++-.+.+.+.-+++++++++++....|..++.-- .|.... .++..++. . +..
T Consensus 219 HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v~dPnl~~hl~hfGId~~~m-----------~kteksl~elel~~N~i~ 287 (763)
T KOG0944|consen 219 HYRETGHPLAVKLGSISPDGADVYCYDCDDEVRDPNLESHLSHFGIDMAKM-----------DKTEKSLVELELDQNRIW 287 (763)
T ss_pred hhhhcCCceEEEecccCCCccceeeecccccccCccHHHHHHhcCccHHHh-----------ccchhHHHHHHHHhhccc
Confidence 35556666777777777777899999999999999988876421 110000 01111110 0 010
Q ss_pred ccccccccccC--CCCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc--cCCchHHHHHHHHHHH
Q 000344 1282 AVLSNEVRSEN--VNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH--VGEPCVVCALYEIFTA 1357 (1630)
Q Consensus 1282 ~P~s~~~~~~s--sng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~--~~~~cv~~aL~~LF~~ 1357 (1630)
. .......+. ..-...+.+||+|+| |+||||||||+|+++|.|...++......... ....++.|+|.+|...
T Consensus 288 E-w~~~~esg~~l~p~~gpgytGl~NlG--NSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~g 364 (763)
T KOG0944|consen 288 E-WEALEESGAPLEPLFGPGYTGLINLG--NSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHG 364 (763)
T ss_pred C-ceeeccCCCccccccCCCccceeecC--cchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHH
Confidence 0 000000011 111234579999999 59999999999999999999888763222222 2345899999999999
Q ss_pred HhhccCCCC------CcccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCC
Q 000344 1358 LSIASTDTR------KEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGS 1431 (1630)
Q Consensus 1358 L~~ss~~~~------~~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gs 1431 (1630)
|........ ...|+|..|+..+++-+|. |...+||||+|||.+||+.|.+.....
T Consensus 365 m~sgkys~p~~~~~~qngIsP~mFK~~igknHpe---Fst~~QQDA~EFllfLl~ki~~n~rs~---------------- 425 (763)
T KOG0944|consen 365 MLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPE---FSTNRQQDAQEFLLFLLEKIRENSRSS---------------- 425 (763)
T ss_pred hhcCcccCccCCccccCCcCHHHHHHHHcCCCcc---ccchhhhhHHHHHHHHHHHHhhccccc----------------
Confidence 986543311 3689999999999998887 999999999999999999999854321
Q ss_pred CccCCCcccccccceeEEEEEEEccCCCcccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHhcc--cccccCCC
Q 000344 1432 WDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMN--HQLACDPG 1509 (1630)
Q Consensus 1432 w~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~~~--e~~~Cd~~ 1509 (1630)
..-++++|...+..++.|..|++++.+. ...+++.+++.-.. .......+..||+.|+.+ +.++|
T Consensus 426 ------~~nptd~frF~ve~Rv~C~~c~kVrYs~-~~~~~i~lpv~~~~---~v~~~v~~~~cleaff~pq~~df~s--- 492 (763)
T KOG0944|consen 426 ------LPNPTDLFRFEVEDRVSCLGCRKVRYSY-ESEYLIQLPVPMTN---EVREKVPISACLEAFFEPQVDDFWS--- 492 (763)
T ss_pred ------CCCHHHHHHhhhhhhhhhhccccccccc-hhheeeEeeccccc---cccccCCHHHHHHHhcCCcchhhhh---
Confidence 1236899999999999999999998764 23444445542111 123457899999999987 24555
Q ss_pred CCCcCcc--ceEEEEeecCCCeEEEEEEecCCCccccccccccccccceecccccc
Q 000344 1510 AGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILY 1563 (1630)
Q Consensus 1510 c~~C~k~--~~kq~~IsrlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~ 1563 (1630)
+.|+.+ +.+...|..+|++|+||..+|.......|..+.-..+|..||++.|.
T Consensus 493 -~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~r 547 (763)
T KOG0944|consen 493 -TACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYR 547 (763)
T ss_pred -HhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhh
Confidence 358877 44567899999999999988776555444444334488888888653
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-30 Score=311.75 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=214.3
Q ss_pred cccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHH
Q 000344 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSL 1375 (1630)
Q Consensus 1296 ~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L 1375 (1630)
..++.+||+|.|+ ||||||.||+|+.+..||+.+..++. +...+...++.+||++|..|+.. ..+++...|
T Consensus 189 keTGYVGlrNqGA--TCYmNSLlQslffi~~FRk~Vy~ipT--d~p~grdSValaLQr~Fynlq~~-----~~PvdTtel 259 (1089)
T COG5077 189 KETGYVGLRNQGA--TCYMNSLLQSLFFIAKFRKDVYGIPT--DHPRGRDSVALALQRLFYNLQTG-----EEPVDTTEL 259 (1089)
T ss_pred cceeeeeeccCCc--eeeHHHHHHHHHHHHHHHHHhhcCCC--CCCCccchHHHHHHHHHHHHhcc-----CCCcchHHh
Confidence 4677899999998 99999999999999999999999764 23344558999999999999965 467999998
Q ss_pred HHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEc
Q 000344 1376 RIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNC 1455 (1630)
Q Consensus 1376 ~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C 1455 (1630)
...++ |.+ +..-+|||.|||-+.|.|.|+..+..... ...++.+|-|.+.+.+.|
T Consensus 260 trsfg--Wds---~dsf~QHDiqEfnrVl~DnLEksmrgt~V--------------------Enaln~ifVgkmksyikC 314 (1089)
T COG5077 260 TRSFG--WDS---DDSFMQHDIQEFNRVLQDNLEKSMRGTVV--------------------ENALNGIFVGKMKSYIKC 314 (1089)
T ss_pred hhhcC--ccc---chHHHHHhHHHHHHHHHHHHHHhhcCChh--------------------hhHHhHHHHHHhhceeeE
Confidence 77765 333 66678999999999999999997654322 345789999999999999
Q ss_pred cCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCcCcc-ceEEEEeecCC
Q 000344 1456 YSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKL-NYIHHILSTPP 1527 (1630)
Q Consensus 1456 ~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c~~C~k~-~~kq~~IsrlP 1527 (1630)
-+-.++|.+ .+.|+++ ++.... ..|+|.++.|. ++++|.|+. -|-. +.+-..+..+|
T Consensus 315 vnvnyEsar--vedfwdiqlNvK~~---------knLqeSfr~yIqvE~l~GdN~Y~ae~----~GlqdAkKGViFeSlP 379 (1089)
T COG5077 315 VNVNYESAR--VEDFWDIQLNVKGM---------KNLQESFRRYIQVETLDGDNRYNAEK----HGLQDAKKGVIFESLP 379 (1089)
T ss_pred EEechhhhh--HHHHHHHHhcccch---------hhHHHHHHHhhhheeccCCccccccc----ccchhhccceeeccCc
Confidence 999888877 3455544 333222 34556665554 566777752 3322 55678899999
Q ss_pred CeEEEEEEecCC---CccccccccccccccceeccccccccC-----CCCCceEEEEEEEEeC----CeEEEEEEeCCCC
Q 000344 1528 HVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYRGL-----DPKRRHSLVSVVCYYG----QHYHCFAYSHDQE 1595 (1630)
Q Consensus 1528 ~VLiIhLkr~~~---~~~~~KI~~~v~~fP~~LDLs~~~~g~-----~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~ 1595 (1630)
+||-|+|+||.+ ...+.||++... ||.+|||.||.... +..+.|.|+||++|.| |||+|+++...+|
T Consensus 380 pVlhlqLKRFeyDfe~d~mvKINDryE-FP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg 458 (1089)
T COG5077 380 PVLHLQLKRFEYDFERDMMVKINDRYE-FPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDG 458 (1089)
T ss_pred hHHHHHHHHhccccccCceeeeccccc-CcchhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCC
Confidence 999999988764 456789999987 99999999998531 2348999999999999 9999999988899
Q ss_pred cEEEEeCCcceEeCCHHHHHHH
Q 000344 1596 RWIMYDDKTVKVVGSWSDVLSM 1617 (1630)
Q Consensus 1596 ~W~~FDDs~Vt~Vsswe~Vl~~ 1617 (1630)
+||+|||..|+.++. .+|+..
T Consensus 459 ~WykfdDtrVtrat~-kevlee 479 (1089)
T COG5077 459 RWYKFDDTRVTRATE-KEVLEE 479 (1089)
T ss_pred CceeecceehhhHHH-HHHHHH
Confidence 999999999999755 555554
No 24
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.4e-29 Score=282.54 Aligned_cols=198 Identities=19% Similarity=0.210 Sum_probs=144.1
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcccccccccceee
Q 000344 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1630)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~ 1472 (1630)
.|||||||+..|||.|++.+...... . .......++|.++|+|++.+++.| |+..+.+ .++|+.
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~-~-----------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~--~E~F~~ 84 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEA-I-----------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCN--CETFGQ 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc-c-----------cccccccchHhhceEEEEEEEEEE--CCCcccc--cCccEE
Confidence 59999999999999999998643210 0 001124678999999999987777 6667665 567775
Q ss_pred e-cchhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeEEEEEEecCCC-cccccccccc
Q 000344 1473 N-INASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTC-ESFDDITATL 1550 (1630)
Q Consensus 1473 l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhLkr~~~~-~~~~KI~~~v 1550 (1630)
+ ++.. ...+|+++|+.+..++....+. +..| ....++..|.++|+||+|||+||... ....|+.+.+
T Consensus 85 L~l~i~---------~~~~L~e~L~~~~~ee~l~~~~-~~~~-~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v 153 (228)
T cd02665 85 YPLQVN---------GYGNLHECLEAAMFEGEVELLP-SDHS-VKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKL 153 (228)
T ss_pred EEEEEC---------CCCCHHHHHHHhhhhccccccc-ccch-hhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEE
Confidence 5 3321 1268999999987665554331 1111 22445678999999999999988753 3456787776
Q ss_pred ccccceeccccccccCCCCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHHHHHh-hcC-CCc
Q 000344 1551 AALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMC-ERG-HLQ 1624 (1630)
Q Consensus 1551 ~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl~~c-~~~-~~Q 1624 (1630)
. ||..| ....|+|+|||+|.| |||+||+|...+++||+|||+.|+++ ++++|+..+ |.+ .-.
T Consensus 154 ~-FP~~l----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~-~~~~v~~~~fGg~~~~~ 221 (228)
T cd02665 154 E-FPQII----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTES-SWEEVERDSFGGGRNPS 221 (228)
T ss_pred E-eeCcc----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEc-CHHHHhhhccCCCCCCc
Confidence 5 99877 246899999999999 99999999766899999999999998 568888764 332 345
Q ss_pred ccccC
Q 000344 1625 PQKHD 1629 (1630)
Q Consensus 1625 P~vl~ 1629 (1630)
++||+
T Consensus 222 AYiLf 226 (228)
T cd02665 222 AYCLM 226 (228)
T ss_pred eEEEE
Confidence 56653
No 25
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=307.62 Aligned_cols=296 Identities=25% Similarity=0.373 Sum_probs=222.0
Q ss_pred CCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc-cCCchHHHHHHHHHHHHhhccCCCCCcccCc
Q 000344 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH-VGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1630)
Q Consensus 1294 ng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~-~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP 1372 (1630)
.+.....+||.|+|+ |||||+|||+|.|.+..+...+...+..... ....|+.|++.++|..++... .+..+.|
T Consensus 155 ~~~~~~l~g~~n~g~--tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~---~~~~~sp 229 (492)
T KOG1867|consen 155 STTALGLRGLRNLGS--TCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH---NRTPYSP 229 (492)
T ss_pred ceeeecccccccccH--HHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC---CCCCcCh
Confidence 345667899999995 9999999999999999998888876552222 235699999999999999653 2789999
Q ss_pred HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEE
Q 000344 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1630)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~ 1452 (1630)
..+.+.+++..|. |.++.|||||||+..++|.+|.+...... ..-.. . +. ..-.++++..|.|.+.+.
T Consensus 230 ~~~l~~~~k~~~~---~~g~~Qqda~eF~~~~~~~~~~~~~~~~k-----~~~~~-~--~~-~~c~~iv~~~F~G~L~~~ 297 (492)
T KOG1867|consen 230 FELLNLVWKHSPN---LAGYEQQDAHEFLIALLDRLHREKDDCGK-----SLIAS-Q--SN-KQCPCIVHTIFSGTLQSD 297 (492)
T ss_pred HHHHHHHHHhCcc---cccccccchHHHHHHhccccccccccccc-----ccccc-c--CC-cccccccceeecceeccc
Confidence 9999999998877 88899999999999999999998711100 00000 0 00 012689999999999999
Q ss_pred EEccCCCcccccccccceeee---cchhhhhhhhhhcccCCHHHHHHHHhccc------ccccCCCCCCcCcc--ceEEE
Q 000344 1453 MNCYSCGLESRHLKYTSFFHN---INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHH 1521 (1630)
Q Consensus 1453 i~C~~Cg~~S~~~e~~sf~~l---I~~~~l~~~~~~~~~~SL~dlLk~~~~~e------~~~Cd~~c~~C~k~--~~kq~ 1521 (1630)
++|..|+..|.. +++|+.+ |+......... .+..++.+++..+...+ .+.| ..|+.+ ..++.
T Consensus 298 v~c~~c~~~S~~--~dpf~disL~i~~~~~~~~~~-~~~~~~~~cl~~~~~~~~~~~~~~~~c----~~c~~~~~~~kql 370 (492)
T KOG1867|consen 298 VTCQTCGSKSTT--YDPFMDISLDIPDQFTSSSVR-SPELTLLDCLDRFTRSEQLGKDSKYKC----SSCKSKQESTKQL 370 (492)
T ss_pred eeehhhcceeee--ccCccceeeecchhccCcccc-cchhhhhhhhhhhhhhhhcCccccccc----CCccccccccccc
Confidence 999999999955 7777765 33211110000 00245777887765333 4445 568877 45689
Q ss_pred EeecCCCeEEEEEEecCCCccc--cccccccccccceecccccccc------CCCCCceEEEEEEEEeC----CeEEEEE
Q 000344 1522 ILSTPPHVFTTVLGWQNTCESF--DDITATLAALSPEIDISILYRG------LDPKRRHSLVSVVCYYG----QHYHCFA 1589 (1630)
Q Consensus 1522 ~IsrlP~VLiIhLkr~~~~~~~--~KI~~~v~~fP~~LDLs~~~~g------~~~~~~Y~L~AVVvH~G----GHY~Ayv 1589 (1630)
.|.++|.+|.+||+||...... .||... +.||..|+|.+|+.. ..+...|+|+|||+|+| |||+||+
T Consensus 371 ~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~-v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~ 449 (492)
T KOG1867|consen 371 TIRKLPAVLCLHLKRFEHSATGAREKIDSY-VSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYR 449 (492)
T ss_pred ccccCCceeeeeeccccccccccccccCcc-cccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEE
Confidence 9999999999999987653222 255555 459999999999863 12457999999999999 9999999
Q ss_pred EeCCCCcEEEEeCCcceEeCCHHHHHHH
Q 000344 1590 YSHDQERWIMYDDKTVKVVGSWSDVLSM 1617 (1630)
Q Consensus 1590 R~~~~~~W~~FDDs~Vt~Vsswe~Vl~~ 1617 (1630)
| ..+.||+|||+.|+.+ +.++|++.
T Consensus 450 r--~~~~~~~~dDs~v~~~-s~~eVl~~ 474 (492)
T KOG1867|consen 450 R--QSGGWFKCDDSTVTKV-SEEEVLSS 474 (492)
T ss_pred E--eCCCcEEEcCeEEEEe-eHHHhhhc
Confidence 9 6789999999999997 55777654
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=8e-29 Score=282.60 Aligned_cols=206 Identities=16% Similarity=0.148 Sum_probs=142.4
Q ss_pred ccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCccccccccc
Q 000344 1389 FQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYT 1468 (1630)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~ 1468 (1630)
|.+++||||||||++|||.||+++........ .. +.. .....+..+|+|.+.++++|..|++++.+ ++
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~--~~-------~~~-~~~~~~~~~F~~~l~s~i~C~~C~~~s~~--~e 95 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVP--PS-------NIE-IKRLNPLEAFKYTIESSYVCIGCSFEENV--SD 95 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCC--CC-------ccc-ccccCHhHheeeEEEeEEEecCCCCeeee--cc
Confidence 88999999999999999999997743211000 00 000 01122457899999999999999999987 45
Q ss_pred ceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc--ccccCCCCCCcCcc-ceEEEEeecCCCeEEEEEEecCCCcccc
Q 000344 1469 SFFHN-INASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKL-NYIHHILSTPPHVFTTVLGWQNTCESFD 1544 (1630)
Q Consensus 1469 sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e--~~~Cd~~c~~C~k~-~~kq~~IsrlP~VLiIhLkr~~~~~~~~ 1544 (1630)
+|+.+ ++... ....++++++..|...+ .+.|+ .|+.. +.++..|.++|+||+|||+||....
T Consensus 96 ~~~~L~L~i~~-------~~~~~le~l~~~~~~~~~~e~~C~----~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~--- 161 (245)
T cd02673 96 VGNFLDVSMID-------NKLDIDELLISNFKTWSPIEKDCS----SCKCESAISSERIMTFPECLSINLKRYKLRI--- 161 (245)
T ss_pred ccceecccccc-------CCcchHHHHHHHhhcccccCccCC----CCCCccceeechhhhCChhhEEeeEeeeecc---
Confidence 66654 33211 01245778887766433 45665 57665 4457779999999999999985422
Q ss_pred ccccccccccceeccccccccCCCCCceEEEEEEEEeC-----CeEEEEEEeCC-CCcEEEEeCCcceEeCCHHHHHHHh
Q 000344 1545 DITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD-QERWIMYDDKTVKVVGSWSDVLSMC 1618 (1630)
Q Consensus 1545 KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~-~~~W~~FDDs~Vt~Vsswe~Vl~~c 1618 (1630)
++...+ ....+++.+|+. ....|+|+|||+|.| |||+||+|... .++||.|||+.|++| ++++|+...
T Consensus 162 ~~~~~~--~~~~~~~~~~~~---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v-~~~~v~~~~ 235 (245)
T cd02673 162 ATSDYL--KKNEEIMKKYCG---TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPV-SKNDVSTNA 235 (245)
T ss_pred cccccc--cccccccccccC---CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEc-CHHHHhhcc
Confidence 111111 112456776654 456899999999999 99999999765 689999999999998 567787432
Q ss_pred hcCCCcccccC
Q 000344 1619 ERGHLQPQKHD 1629 (1630)
Q Consensus 1619 ~~~~~QP~vl~ 1629 (1630)
. -+++||+
T Consensus 236 ~---~~aYiLF 243 (245)
T cd02673 236 R---SSGYLIF 243 (245)
T ss_pred C---CceEEEE
Confidence 2 3677775
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.7e-28 Score=272.22 Aligned_cols=215 Identities=20% Similarity=0.294 Sum_probs=154.0
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCCcccccccccceee
Q 000344 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1630)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~ 1472 (1630)
.||||+|||..+|+.|+.++...... ........+.+.++|+|.+.+.+.|..|+..+.......++.
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~ 88 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLS 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEE
Confidence 69999999999999999988653221 011222357899999999999999999987665533223332
Q ss_pred ecchhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcC----ccceEEEEeecCCCeEEEEEEecCCC--cccccc
Q 000344 1473 NINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE----KLNYIHHILSTPPHVFTTVLGWQNTC--ESFDDI 1546 (1630)
Q Consensus 1473 lI~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~----k~~~kq~~IsrlP~VLiIhLkr~~~~--~~~~KI 1546 (1630)
++..... ....+|.++|+.++..+...- ..|..|+ ....++..|.++|++|+|+|.|+... ....|+
T Consensus 89 -l~~~~~~-----~~~~~l~~~l~~~~~~e~~~~-~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~ 161 (255)
T cd02257 89 -LPLPVKG-----LPQVSLEDCLEKFFKEEILEG-DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKL 161 (255)
T ss_pred -eeccCCC-----CCCCcHHHHHHHhhhhhccCC-CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccC
Confidence 2221110 024789999998876543321 1234565 23556888999999999999887653 234566
Q ss_pred ccccccccceeccccccc-------cCCCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHH
Q 000344 1547 TATLAALSPEIDISILYR-------GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDV 1614 (1630)
Q Consensus 1547 ~~~v~~fP~~LDLs~~~~-------g~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~V 1614 (1630)
...+. ||..|++..++. +......|+|+|||+|.| |||+||+|....++||+|||..|++|+. ++|
T Consensus 162 ~~~v~-~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~-~~~ 239 (255)
T cd02257 162 NTKVS-FPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSE-EEV 239 (255)
T ss_pred CCeEe-CCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCH-HHh
Confidence 66654 999999987753 334567999999999998 8999999976559999999999999954 555
Q ss_pred HHHhhcCCCcccccC
Q 000344 1615 LSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1615 l~~c~~~~~QP~vl~ 1629 (1630)
+.. .....+|++|+
T Consensus 240 ~~~-~~~~~~~yll~ 253 (255)
T cd02257 240 LEF-GSLSSSAYILF 253 (255)
T ss_pred hhc-cCCCCceEEEE
Confidence 433 55677888774
No 28
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=304.81 Aligned_cols=281 Identities=19% Similarity=0.275 Sum_probs=214.2
Q ss_pred CcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCC--cccCCchHHHHHHHHHHHHhhccCCCCCcccCc
Q 000344 1295 GIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1630)
Q Consensus 1295 g~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP 1372 (1630)
+.....+||+|-|+ |||||+++|-|.++|.+|+.++......+ ....+.-++|.|+.+|..|..+ +-..+-|
T Consensus 90 Rpp~gfVGLKNaga--tcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s----~lQyyVP 163 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGA--TCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAAS----QLQYYVP 163 (944)
T ss_pred CCCcceeeecCCCc--hHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHH----hhhhhcc
Confidence 45566899999996 99999999999999999998887654311 1112224899999999999865 5578999
Q ss_pred HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEE
Q 000344 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1630)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~ 1452 (1630)
..|...+.-.. ......+||||-||+..|||.+.+.++.... .-+....|+|.+..+
T Consensus 164 eg~Wk~Fr~~~---~pln~reqhDA~eFf~sLld~~De~LKklg~--------------------p~lf~n~f~G~ysdq 220 (944)
T KOG1866|consen 164 EGFWKQFRLWG---EPLNLREQHDALEFFNSLLDSLDEALKKLGH--------------------PQLFSNTFGGSYSDQ 220 (944)
T ss_pred hhHHHHhhccC---CccchHhhhhHHHHHHHHHHHHHHHHHHhCC--------------------cHHHHHHhcCccchh
Confidence 99888776433 2355678999999999999999998876422 446788999999999
Q ss_pred EEccCCCcccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCcCccce--EEEEee
Q 000344 1453 MNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLNY--IHHILS 1524 (1630)
Q Consensus 1453 i~C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c~~C~k~~~--kq~~Is 1524 (1630)
-.|..|-+.-.. .++|. .++.. ..-.+|++.|+.|. +.+.|+|+ +|.++.. +++.|.
T Consensus 221 KIC~~CpHRY~~--eE~F~-~l~l~--------i~~~nLeesLeqfv~gevlEG~nAYhCe----KCdeK~~TvkRt~ik 285 (944)
T KOG1866|consen 221 KICQGCPHRYEC--EESFT-TLNLD--------IRHQNLEESLEQFVKGEVLEGANAYHCE----KCDEKVDTVKRTCIK 285 (944)
T ss_pred hhhccCCcccCc--cccce-eeeee--------cccchHHHHHHHHHHHHHhcCcchhhhh----hhhhhhHhHHHHHHh
Confidence 999999877543 23444 33321 11257778887765 56789998 5988743 588999
Q ss_pred cCCCeEEEEEEecCC---Cccccccccccccccceeccccccc-c-----------------CCCCCceEEEEEEEEeC-
Q 000344 1525 TPPHVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYR-G-----------------LDPKRRHSLVSVVCYYG- 1582 (1630)
Q Consensus 1525 rlP~VLiIhLkr~~~---~~~~~KI~~~v~~fP~~LDLs~~~~-g-----------------~~~~~~Y~L~AVVvH~G- 1582 (1630)
++|.||+|||+||.+ ++...|.++.+. ||.+|||.||+. | ....++|+|+|||+|+|
T Consensus 286 ~LPsvl~IqLkRF~yD~e~~~~iK~n~~fr-FP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq 364 (944)
T KOG1866|consen 286 KLPSVLAIQLKRFDYDWERECAIKFNDYFR-FPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ 364 (944)
T ss_pred hCChhheehhhhccchhhhccccccchhcc-cchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc
Confidence 999999999998875 344567788876 999999999963 1 11246999999999999
Q ss_pred ---CeEEEEEEeC---CCCcEEEEeCCcceEeCCHHHHHHHhhcC
Q 000344 1583 ---QHYHCFAYSH---DQERWIMYDDKTVKVVGSWSDVLSMCERG 1621 (1630)
Q Consensus 1583 ---GHY~AyvR~~---~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~ 1621 (1630)
|||++|+++. ..++||+|||..|++++ ...+-..|-.|
T Consensus 365 AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~-~n~me~~cfGG 408 (944)
T KOG1866|consen 365 ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECK-MNEMENECFGG 408 (944)
T ss_pred ccCcchhhhhhhhccCCCCceEeccCccccccc-hhhHHHHhhcc
Confidence 9999999863 36899999999999973 33444444444
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.8e-27 Score=271.33 Aligned_cols=204 Identities=18% Similarity=0.289 Sum_probs=156.8
Q ss_pred ccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc--cCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHH
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH--VGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1630)
Q Consensus 1299 ~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~--~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~ 1376 (1630)
..+||.|+| |+||+|||||+|++...+...+....+..... ....|+.|+|.+|+..|...........+.|..|+
T Consensus 302 ~~~GliNlG--NsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 302 PYVGLINLG--NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred CccceEecC--CeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 379999999 59999999999999998887776654332222 23448999999999988754323356789999999
Q ss_pred HHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEcc
Q 000344 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCY 1456 (1630)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~ 1456 (1630)
..++.-++. |...+||||+|||.+||+.|.+.+... ..+.|+++|...+..++.|.
T Consensus 380 ~~igq~h~e---Fg~~~QQDA~EFLlfLL~kirk~~~S~---------------------~~~~It~lf~Fe~e~rlsC~ 435 (749)
T COG5207 380 MLIGQDHPE---FGKFAQQDAHEFLLFLLEKIRKGERSY---------------------LIPPITSLFEFEVERRLSCS 435 (749)
T ss_pred HHHcCCchh---hhhhhhhhHHHHHHHHHHHHhhccchh---------------------cCCCcchhhhhhhcceeccc
Confidence 999887665 999999999999999999999854321 13568899999999999999
Q ss_pred CCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc--ccccCCCCCCcCccce--EEEEeecCCCeEE
Q 000344 1457 SCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKLNY--IHHILSTPPHVFT 1531 (1630)
Q Consensus 1457 ~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e--~~~Cd~~c~~C~k~~~--kq~~IsrlP~VLi 1531 (1630)
.|+.++.. |++.... |... ......++.++++.|+.++ .|.|+ .|+.+.. ++..|..+|++||
T Consensus 436 ~C~~v~yS--ye~~~~i~i~le------~n~E~~di~~~v~a~f~pdtiE~~Ce----nCk~K~~a~~k~~~kslPk~LI 503 (749)
T COG5207 436 GCMDVSYS--YESMLMICIFLE------GNDEPQDIRKSVEAFFLPDTIEWSCE----NCKGKKKASRKPFIKSLPKYLI 503 (749)
T ss_pred cccccccc--ccceEEEEeecc------cCcchhhHHHHHHheECccceeeehh----hhcCcccccccchhhccCceeE
Confidence 99999987 4444432 4332 1223367888999999888 56776 5887744 4668999999999
Q ss_pred EEEEecCCC
Q 000344 1532 TVLGWQNTC 1540 (1630)
Q Consensus 1532 IhLkr~~~~ 1540 (1630)
|+..|++..
T Consensus 504 lq~~R~~lq 512 (749)
T COG5207 504 LQVGRYSLQ 512 (749)
T ss_pred Eecceeecc
Confidence 999776543
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.5e-26 Score=274.77 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=101.0
Q ss_pred cCCHHHHHHHHh------cccccccCCCCC----------CcCcc---------------ceEEEEeecCCCeEEEEEEe
Q 000344 1488 ESSLDELLNLVE------MNHQLACDPGAG----------GCEKL---------------NYIHHILSTPPHVFTTVLGW 1536 (1630)
Q Consensus 1488 ~~SL~dlLk~~~------~~e~~~Cd~~c~----------~C~k~---------------~~kq~~IsrlP~VLiIhLkr 1536 (1630)
..+++.||..|+ ++++|.|+.+|. +|+.. ++++..|..+|+||+|||+|
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 468999999987 467889985332 22211 12356788999999999998
Q ss_pred cCC--Cccccccccccccccceeccccccc----cC--CCCCceEEEEEEEEeC----CeEEEEEEeC------------
Q 000344 1537 QNT--CESFDDITATLAALSPEIDISILYR----GL--DPKRRHSLVSVVCYYG----QHYHCFAYSH------------ 1592 (1630)
Q Consensus 1537 ~~~--~~~~~KI~~~v~~fP~~LDLs~~~~----g~--~~~~~Y~L~AVVvH~G----GHY~AyvR~~------------ 1592 (1630)
|.. .....+.++.+. |+..+|+.+|+. ++ .....|+|+|||.|.| ||||+|+|..
T Consensus 757 f~q~~~~~~~k~~~h~~-f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVD-FKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhhhchhhcccccch-HHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccc
Confidence 764 222456666654 999999998874 22 2456999999999999 9999999841
Q ss_pred --------CCCcEEEEeCCcceEeCCHHHHHHHhhcCCCcccccC
Q 000344 1593 --------DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1593 --------~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~~~QP~vl~ 1629 (1630)
..++||++.|..|++| +|+.|+.. |-||||
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~Vrev-S~d~vLks------eAYlLF 873 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREV-SLDEVLKS------EAYLLF 873 (877)
T ss_pred cchhccCCCCcceEEecchheecc-cHHHHhhh------hhhhhh
Confidence 3689999999999997 89999876 556654
No 31
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.92 E-value=1.4e-24 Score=254.86 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=200.9
Q ss_pred ccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHh-hccCCCCCcccCcHHHHHHH
Q 000344 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALS-IASTDTRKEAVAPTSLRIAL 1379 (1630)
Q Consensus 1301 ~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~-~ss~~~~~~~vsP~~L~~aL 1379 (1630)
.||.|.++ +||+||+||+|+++|+||+.++... .+..+.|+.|.|.-||..|. .. ....+.+..|.++|
T Consensus 1 ~GlEn~~~--nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~----~g~~cq~sNflr~l 70 (295)
T PF13423_consen 1 SGLENHIP--NSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKA----KGINCQASNFLRAL 70 (295)
T ss_pred CCCcCCCC--cchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhc----CCCcChHHHHHHHH
Confidence 49999985 9999999999999999999999854 26667799999999999999 53 45678888998888
Q ss_pred hhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCCC
Q 000344 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1630)
Q Consensus 1380 ~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1630)
+..... ...+.|+|.++|+++||+.|+.++........-... -......+.|.++|+......++|..|+
T Consensus 71 ~~~~~a---~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~f~~~~~~~~~c~~c~ 140 (295)
T PF13423_consen 71 SWIPEA---AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE-------NSSSSPESSISQLFGTSFETTIRCTSCG 140 (295)
T ss_pred hcCHHH---HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc-------cccCCCcchHHHHhCcceeeeecccccC
Confidence 876322 445569999999999999999998765321100000 0112235679999999999999999999
Q ss_pred cccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHhccc---ccccCCCCCCcCccc--eEEEEeecCCCeEEEEE
Q 000344 1460 LESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKLN--YIHHILSTPPHVFTTVL 1534 (1630)
Q Consensus 1460 ~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~~~e---~~~Cd~~c~~C~k~~--~kq~~IsrlP~VLiIhL 1534 (1630)
..+.+........+.++. .....+|.++|+.....+ ...|+ .|++.. ..+..|.++|+||.|.+
T Consensus 141 ~~~~~~~~~~~~~l~yp~-------~~~~~tf~~~Le~sl~~e~~~~a~C~----~C~~~~~~~~~r~i~~LPpVL~In~ 209 (295)
T PF13423_consen 141 HESVKESSTLVLDLPYPP-------SNSNVTFSQVLEHSLNREQQTRAWCE----KCNKYQPTEQRRTIRSLPPVLSINL 209 (295)
T ss_pred CeEEeecceeeeeccCCC-------CCccchHHHHHHHHHhhccccccccc----ccccccceeeeeeccCCCcEEEEEc
Confidence 988764322122222221 122479999999876433 45676 598864 34788999999999999
Q ss_pred EecCCCc-cccccccccccccceecccccccc--------CCCCCceEEEEEEEEeC-----CeEEEEEEeCC--CCcEE
Q 000344 1535 GWQNTCE-SFDDITATLAALSPEIDISILYRG--------LDPKRRHSLVSVVCYYG-----QHYHCFAYSHD--QERWI 1598 (1630)
Q Consensus 1535 kr~~~~~-~~~KI~~~v~~fP~~LDLs~~~~g--------~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~--~~~W~ 1598 (1630)
++.+... ...+.... +.+|..+++..++.. .....+|+|.|+|+|.| ||||+|||-.. +.+||
T Consensus 210 ~~~~~~~~w~~~~~~~-~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~ 288 (295)
T PF13423_consen 210 NRYSEEEFWPKKNWLK-IWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWY 288 (295)
T ss_pred cCCCcccccccccCCc-eecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEE
Confidence 7665531 22333333 348888888877632 34566999999999999 99999999642 37999
Q ss_pred EEeCCcc
Q 000344 1599 MYDDKTV 1605 (1630)
Q Consensus 1599 ~FDDs~V 1605 (1630)
.|||..|
T Consensus 289 lFNDflV 295 (295)
T PF13423_consen 289 LFNDFLV 295 (295)
T ss_pred EECcEeC
Confidence 9999765
No 32
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.92 E-value=1.3e-25 Score=221.54 Aligned_cols=107 Identities=39% Similarity=0.585 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1630)
++|++++++|||+|||++|+|++++||++..+|++|++||+||+++|..++|+++|++||++||+||++|+.|+|+|
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--- 77 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--- 77 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---
Confidence 46899999999999999999999999998777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc---CccHHHHHHHHHHhhcccCC
Q 000344 142 AHFYANLLYEAAND---GKEYEEVVQECERALAIENP 175 (1630)
Q Consensus 142 a~~~A~~L~~~~~~---~~~Y~ea~~e~~RAL~I~~P 175 (1630)
|++||++|++ ..+|++|+.+|+|||+|.+|
T Consensus 78 ----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 78 ----AHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999 55999999999999999999
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-25 Score=298.57 Aligned_cols=286 Identities=20% Similarity=0.279 Sum_probs=217.7
Q ss_pred CCCCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccC
Q 000344 1292 NVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1630)
Q Consensus 1292 ssng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vs 1371 (1630)
.+......++||.|+|+ ||||||+||+|++++.||..+...............+..+|+.||..|+.+ ...+|.
T Consensus 162 d~k~~tg~~vGL~N~Ga--TCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s----~~k~Vd 235 (1093)
T KOG1863|consen 162 DSKRLTGFPVGLKNLGA--TCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMS----KRKYVD 235 (1093)
T ss_pred hhhhcCCCCccccCCCc--eeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhc----CCCCcC
Confidence 44555667899999995 999999999999999999999998742111222335899999999999975 456999
Q ss_pred cHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEE
Q 000344 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFE 1451 (1630)
Q Consensus 1372 P~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s 1451 (1630)
|..+...+.... ....+|||+|||++.|+|.|.+.+.... ....|..+|.|.+.+
T Consensus 236 t~~~~~~~~~~~-----~~~~~QqDvqEf~~~l~d~LE~~~~~~~--------------------~~~~l~~lf~g~~~~ 290 (1093)
T KOG1863|consen 236 TSELTKSLGWDS-----NDSFEQQDVQEFLTKLLDWLEDSMIDAK--------------------VENTLQDLFTGKMKS 290 (1093)
T ss_pred chhhhhhhhccc-----ccHHhhhhHHHHHHHHHHHHHhhccchh--------------------hhhhhhhhhcCCcce
Confidence 999988887542 3456899999999999999999876532 144678999999999
Q ss_pred EEEccCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhcccccccCCC-CCCcCccc--eEEEEeecCC
Q 000344 1452 RMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQLACDPG-AGGCEKLN--YIHHILSTPP 1527 (1630)
Q Consensus 1452 ~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~-c~~C~k~~--~kq~~IsrlP 1527 (1630)
.+.|..|+..+.. .+.|..+ ++.... .++.+.|..|+..++..-|.. |..|.... .+...+..+|
T Consensus 291 ~i~c~~~~~~s~r--~e~f~d~ql~~~g~---------~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lP 359 (1093)
T KOG1863|consen 291 VIKCIDVDFESSR--SESFLDLQLNGKGV---------KNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLP 359 (1093)
T ss_pred EEEEEeeeeeccc--cccccCccccccch---------hhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCC
Confidence 9999999999855 3455543 222111 236666666654443332221 34677663 4467889999
Q ss_pred CeEEEEEEecCC---Cccccccccccccccceeccccccc--cC---CCCCceEEEEEEEEeC----CeEEEEEEeCCCC
Q 000344 1528 HVFTTVLGWQNT---CESFDDITATLAALSPEIDISILYR--GL---DPKRRHSLVSVVCYYG----QHYHCFAYSHDQE 1595 (1630)
Q Consensus 1528 ~VLiIhLkr~~~---~~~~~KI~~~v~~fP~~LDLs~~~~--g~---~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~ 1595 (1630)
+||.|+|.||.. .+...||+..+. ||..|+|.+|+. .. ...+.|.|+||.+|.| |||++|++....+
T Consensus 360 pvl~~qL~Rf~~~~~~~~~~Ki~d~~~-fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~ 438 (1093)
T KOG1863|consen 360 PVLFIQLMRFEYDFSTGQKIKINDKFE-FPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDG 438 (1093)
T ss_pred chhhhhhhheeeeccCCceeehhhccC-CccccccchhccccchhhhhccceeccchhhcccccccCccceeeecchhhc
Confidence 999999988775 455678888876 999999999865 22 2235999999999988 9999999988899
Q ss_pred cEEEEeCCcceEeCCHHHHHHHhhc
Q 000344 1596 RWIMYDDKTVKVVGSWSDVLSMCER 1620 (1630)
Q Consensus 1596 ~W~~FDDs~Vt~Vsswe~Vl~~c~~ 1620 (1630)
+|+.|||..|+.++.++..-+.++.
T Consensus 439 ~w~kfdd~~v~~~~~~~~l~~~~g~ 463 (1093)
T KOG1863|consen 439 KWVKFDDLVVTVVSEKEALEQNYGT 463 (1093)
T ss_pred cceeccCceeeeccHHHHHHhhCCC
Confidence 9999999999999886666555553
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=3.6e-25 Score=255.81 Aligned_cols=220 Identities=20% Similarity=0.295 Sum_probs=159.3
Q ss_pred ccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHH
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1630)
Q Consensus 1299 ~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~a 1378 (1630)
...||.|.|. |||+||+||+|+++|+||..+.. ..+.+..+.|+.|+|..||..
T Consensus 14 ~~~gl~~~~~--~~y~n~~lq~~~~~~~~~~~~~~---~~~~~~~~~~l~~el~~lfs~--------------------- 67 (268)
T cd02672 14 NYAGLENHIT--NSYCNSLLQLLYFIPPFRNFTAI---ILVACPKESCLLCELGYLFST--------------------- 67 (268)
T ss_pred cccccccCCc--cchHHHHHHHHHhcHHHHHHHHh---hcccCCcCccHHHHHHHHHHH---------------------
Confidence 4789999996 99999999999999999998322 234566677999999999911
Q ss_pred HhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCC
Q 000344 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1630)
Q Consensus 1379 L~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1630)
+ .+-|-.+|++.++.+.... + ..|
T Consensus 68 ~-----------------iq~F~~fll~~i~~~~~~~-----------------------------~----------~~C 91 (268)
T cd02672 68 L-----------------IQNFTRFLLETISQDQLGT-----------------------------P----------FSC 91 (268)
T ss_pred H-----------------HHHHHHHHHHHHHHHhccc-----------------------------C----------CCC
Confidence 1 1556789999998754221 0 568
Q ss_pred Ccccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHhccc---ccccCCCCCCcCcc--ceEEEEeecCCC----
Q 000344 1459 GLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKL--NYIHHILSTPPH---- 1528 (1630)
Q Consensus 1459 g~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~~~e---~~~Cd~~c~~C~k~--~~kq~~IsrlP~---- 1528 (1630)
+..+.+ .++++.+ ++..... .....+|.+||+.+...+ .+.|+ .|++. ..++..|.++|+
T Consensus 92 ~~~s~~--~~~~~~LsLpip~~~----~~~~~sl~~cL~~~~~~E~~~~~~C~----~C~~~~~a~k~~~i~~lP~~L~~ 161 (268)
T cd02672 92 GTSRNS--VSLLYTLSLPLGSTK----TSKESTFLQLLKRSLDLEKVTKAWCD----TCCKYQPLEQTTSIRHLPDILLL 161 (268)
T ss_pred Cceeec--cccceeeeeecCccc----cccCCCHHHHHHHHhhhhhccccccc----ccCcccccEEEEEeecCCCcccc
Confidence 888776 4455544 2221110 123479999999987543 45665 58766 557899999999
Q ss_pred eEEEEEEecCCCcc-------ccccccccccccceeccccccc-cCCCCCceEEEEEEEEeC-----CeEEEEEEeCC--
Q 000344 1529 VFTTVLGWQNTCES-------FDDITATLAALSPEIDISILYR-GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD-- 1593 (1630)
Q Consensus 1529 VLiIhLkr~~~~~~-------~~KI~~~v~~fP~~LDLs~~~~-g~~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~-- 1593 (1630)
||+|||+||..... ..++....+.||..+++..... +......|+|+|||+|.| |||+||||...
T Consensus 162 VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~ 241 (268)
T cd02672 162 VLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE 241 (268)
T ss_pred eEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCC
Confidence 99999999875321 1122233455887776654432 344557899999999987 89999999643
Q ss_pred --CCcEEEEeCCcceEeCC
Q 000344 1594 --QERWIMYDDKTVKVVGS 1610 (1630)
Q Consensus 1594 --~~~W~~FDDs~Vt~Vss 1610 (1630)
.++||.|||..|++|+.
T Consensus 242 ~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 242 STHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred CCCCcEEEecCeEEEEcCc
Confidence 68899999999999987
No 35
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.5e-24 Score=279.92 Aligned_cols=163 Identities=25% Similarity=0.358 Sum_probs=124.4
Q ss_pred CCCcccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCccc-----CCchHHHHHHHHHHHHhhccCCCCC
Q 000344 1293 VNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHV-----GEPCVVCALYEIFTALSIASTDTRK 1367 (1630)
Q Consensus 1293 sng~~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~-----~~~cv~~aL~~LF~~L~~ss~~~~~ 1367 (1630)
..+.....+||.|+|| |||||+.+|||.+++.++++|+......+.+. ....+..++.++...++.. ..
T Consensus 239 ~~~~~~g~~Gl~nlGn--tcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~----~~ 312 (842)
T KOG1870|consen 239 SSPSERGETGLSNLGN--TCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSG----NK 312 (842)
T ss_pred cCCCcccccccccCCc--cccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccC----Cc
Confidence 4455667899999995 99999999999999999999998654331121 1235677888889888854 23
Q ss_pred cccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccc-------cccCCCCccC--CCc
Q 000344 1368 EAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVE-------SNCMGSWDCT--NSA 1438 (1630)
Q Consensus 1368 ~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~e-------s~~~gsw~~~--~~~ 1438 (1630)
..+.|..++..+....+. |.++.|||.+|||.+|||.||+.+......+..+..+ ....+.|... .+.
T Consensus 313 ~~v~~~~~~~~~~~~a~~---~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~ 389 (842)
T KOG1870|consen 313 SAVAPTSFRTSLASFASE---FSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNR 389 (842)
T ss_pred cccCchhhhhhhhhcccc---ccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhcc
Confidence 489999999999988775 9999999999999999999999997664432222111 1222234332 357
Q ss_pred ccccccceeEEEEEEEccCCCccccc
Q 000344 1439 CIVHSLFGMDIFERMNCYSCGLESRH 1464 (1630)
Q Consensus 1439 SiI~~LF~G~l~s~i~C~~Cg~~S~~ 1464 (1630)
++|.++|.|.+.+.+.|..|+..+.+
T Consensus 390 s~i~d~~~~~~~S~~~c~~C~~~svt 415 (842)
T KOG1870|consen 390 SVIVDLFDGTYKSTLQCPTCGKVSVT 415 (842)
T ss_pred ceeeeeecceecccccCccCCCceEE
Confidence 89999999999999999999987654
No 36
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-23 Score=248.24 Aligned_cols=254 Identities=17% Similarity=0.247 Sum_probs=190.1
Q ss_pred cccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHH
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1630)
Q Consensus 1298 ~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~ 1377 (1630)
-..+||.|... |||+|+.+|+|+.+|.|+..+..-. ..++....|.+
T Consensus 85 ~~yvglvnqa~--~~~l~~~~~a~~~~~~~~~~~yts~-------------------------------~~~~et~dlt~ 131 (1203)
T KOG4598|consen 85 HRYVGLVNQAS--NDLLFEQSCAISLHDSGISKCYTSE-------------------------------NDSLETKDLTQ 131 (1203)
T ss_pred cceEeehhhHH--HHHHHHHhhhhccChhhhhhhhCCC-------------------------------cccccchhhHh
Confidence 34689999996 9999999999999999998776311 22333333433
Q ss_pred HHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccC
Q 000344 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1630)
Q Consensus 1378 aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1630)
.++-. + -..++|||.||+.+.++|.|+-. |+......+|.+++.|.+...+.|..
T Consensus 132 sfgw~--s---~ea~~qhdiqelcr~mfdalehk--------------------~k~t~~~~li~~ly~g~m~d~v~cl~ 186 (1203)
T KOG4598|consen 132 SFGWT--S---NEAYDQHDVQELCRLMFDALEHK--------------------WKGTEHEKLIQDLYRGTMEDFVACLK 186 (1203)
T ss_pred hcCCC--c---chhhhhhhHHHHHHHHHHHHHhh--------------------hcCchHHHHHHHHhcchHHHHHHHHH
Confidence 34321 1 23568999999999999999764 44444567899999999999999999
Q ss_pred CCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCcCcc--ceEEEEeecCCC
Q 000344 1458 CGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKL--NYIHHILSTPPH 1528 (1630)
Q Consensus 1458 Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c~~C~k~--~~kq~~IsrlP~ 1528 (1630)
|+.++.+. +.|+++ ++..++... ..-.+++++|..|. +.++|.|+ +|+++ +.+-..|..+|-
T Consensus 187 c~~e~~~~--d~fld~pl~v~pfg~~---~ay~sieeal~afvqpe~ldg~nqy~ce----~ck~k~dahkgl~~~~fpy 257 (1203)
T KOG4598|consen 187 CGRESVKT--DYFLDLPLAVKPFGAI---HAYKSVEEALTAFVQPELLDGSNQYMCE----NCKSKQDAHKGLRITQFPY 257 (1203)
T ss_pred cCcccccc--ceeecccccccCCcch---hhhhhHHHHHHHhcChhhcCCccHHHHh----hhhhhhhhhcCceeeccce
Confidence 99999873 345543 222222111 11258899999886 56789997 58887 456789999999
Q ss_pred eEEEEEEecCC---Cccccccccccccccceecccccccc--------------C-------------------------
Q 000344 1529 VFTTVLGWQNT---CESFDDITATLAALSPEIDISILYRG--------------L------------------------- 1566 (1630)
Q Consensus 1529 VLiIhLkr~~~---~~~~~KI~~~v~~fP~~LDLs~~~~g--------------~------------------------- 1566 (1630)
+|+|||+||.. ..-..|+++.+. ||..|||..|... .
T Consensus 258 ~lt~~lkrfdfdy~tmhriklnd~~t-fp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 336 (1203)
T KOG4598|consen 258 LLTIQLKRFDFDYNTMHRIKLNDKMT-FPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQ 336 (1203)
T ss_pred eeEEeeecccccchheeeeeeccccc-CcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCccccc
Confidence 99999987653 223467888876 9999999988520 0
Q ss_pred ----------------------------CCCCceEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHH
Q 000344 1567 ----------------------------DPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDV 1614 (1630)
Q Consensus 1567 ----------------------------~~~~~Y~L~AVVvH~G----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~V 1614 (1630)
.....|+|++|.+|+| |||++|+++.++++||.|||.+|+-+. ..++
T Consensus 337 s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t-~~~i 415 (1203)
T KOG4598|consen 337 SPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFAT-PLEI 415 (1203)
T ss_pred CcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccC-HHHH
Confidence 0023799999999999 999999999999999999999999974 4677
Q ss_pred HHHhhc
Q 000344 1615 LSMCER 1620 (1630)
Q Consensus 1615 l~~c~~ 1620 (1630)
.+.++.
T Consensus 416 ~~sfgg 421 (1203)
T KOG4598|consen 416 EKSFGG 421 (1203)
T ss_pred HHhhCC
Confidence 777764
No 37
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-21 Score=243.48 Aligned_cols=302 Identities=20% Similarity=0.307 Sum_probs=205.1
Q ss_pred ccccccccCCCCCccccch--HHHHHHHhhHHHHHHHhccCCCCCc-ccCCchHHHHHHHHHHHHhhccCCCCCcccCcH
Q 000344 1297 DVYGAGLKNEVGEYNCFLN--VIIQSLWHLRRFREEFSRRSPSEHI-HVGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1630)
Q Consensus 1297 ~~~~~GL~NlGN~NTCYMN--SVLQ~L~h~p~Fr~~Ll~~~~~~~~-~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~ 1373 (1630)
.....|..|.++ +|+-| ++.|.+..+.+++...+......-. .....-+...+.++|....... .....+.|.
T Consensus 229 ~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~i~p~ 304 (587)
T KOG1864|consen 229 NERVFGTNNFSN--TCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRK--KLVGRISPT 304 (587)
T ss_pred cccccCccccCc--cccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhc--ccccccCcc
Confidence 344567788884 99999 9999999999998655543321100 0111123333444444333221 145678899
Q ss_pred HHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCC--cc--ccc---ccCCCCccCC-----Ccccc
Q 000344 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDT--ES--VES---NCMGSWDCTN-----SACIV 1441 (1630)
Q Consensus 1374 ~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~--es--~es---~~~gsw~~~~-----~~SiI 1441 (1630)
.++..+++.... |..++|||||||+.++++.+++........... .. .+. ....+|.+.. ...++
T Consensus 305 ~~~~~~~~~~~~---f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v 381 (587)
T KOG1864|consen 305 RFISDLIKENEL---FTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWV 381 (587)
T ss_pred hhhhhhhhcCCc---cCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHH
Confidence 998888887655 999999999999999999999876543211110 00 011 1122343322 56889
Q ss_pred cccceeEEEEEEEccCCCcccccccccceeee-cchhhhhhhhhhcccCCHHHHHHHHh------cccccccCCCCCCcC
Q 000344 1442 HSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCE 1514 (1630)
Q Consensus 1442 ~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~l-I~~~~l~~~~~~~~~~SL~dlLk~~~------~~e~~~Cd~~c~~C~ 1514 (1630)
+.+|.|++..++.|..|+..+.+ ...|.+. ++.. . .+..++..|++.|. ++++|.|+. |.
T Consensus 382 ~~lf~g~l~~et~Clsc~t~T~~--de~f~D~~~~v~--~-----de~~si~~~l~~~~~~e~l~g~nky~c~~----c~ 448 (587)
T KOG1864|consen 382 SKLFQGILTNETRCLSCETITSR--DEGFLDLSVAVE--I-----DENTSITNLLKSFSSTETLSGENKYSCEN----CC 448 (587)
T ss_pred HHhhcCeeeeeeeeccccccccc--cccccccceecc--c-----cccccHHHHHHHhcchhhccCCCcccccc----cC
Confidence 99999999999999999999876 3455543 2111 0 03468888888765 567888874 66
Q ss_pred cc--ceEEEEeecCCCeEEEEEEecCCCcc---ccccccccccccceeccccccccCC-CCCceEEEEEEEEeC-----C
Q 000344 1515 KL--NYIHHILSTPPHVFTTVLGWQNTCES---FDDITATLAALSPEIDISILYRGLD-PKRRHSLVSVVCYYG-----Q 1583 (1630)
Q Consensus 1515 k~--~~kq~~IsrlP~VLiIhLkr~~~~~~---~~KI~~~v~~fP~~LDLs~~~~g~~-~~~~Y~L~AVVvH~G-----G 1583 (1630)
.. +.++..++.+|.+|+|||++|.+... ..++...+. +|.++.+........ +...|+|+|||+|.| |
T Consensus 449 s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~-~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~G 527 (587)
T KOG1864|consen 449 SLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVV-FPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRG 527 (587)
T ss_pred chhhHHHhccccCCcceeeeehhccccccccccccccccccc-cccceeeccccccccCccceeeEEEEEEeccCCCCCc
Confidence 55 44578889999999999999887532 245555544 888877764443322 247999999999999 9
Q ss_pred eEEEEEEeCCCCcEEEEeCCcceEeCCHHHHHHHhhcC
Q 000344 1584 HYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG 1621 (1630)
Q Consensus 1584 HY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~ 1621 (1630)
||+||+|... -.|+.|||..|+.+ +-+.|....+.+
T Consensus 528 HYia~~r~~~-~nWl~fdD~~V~~~-s~~~v~~~~~~s 563 (587)
T KOG1864|consen 528 HYVAYVKSLD-FNWLLFDDDNVEPI-SEEPVSEFTGSS 563 (587)
T ss_pred ceEEEEeeCC-CCceeccccccccc-CcchhhhccCCC
Confidence 9999999643 33999999999997 447777776654
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=217.08 Aligned_cols=315 Identities=19% Similarity=0.167 Sum_probs=201.4
Q ss_pred ccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc--cCCchHHHHHHHHHHHHhhcc------------
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH--VGEPCVVCALYEIFTALSIAS------------ 1362 (1630)
Q Consensus 1297 ~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~--~~~~cv~~aL~~LF~~L~~ss------------ 1362 (1630)
.+.|+|+.|-| |-|||||+||+|+.|++|-+.+-.+.. .... .....+..++..+...+...+
T Consensus 25 ~i~Prg~ink~--n~c~~ns~Lqal~~c~pfy~l~~~i~~-~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~ 101 (420)
T KOG1871|consen 25 PIDPRGSINKC--NICFMNSILQALLYCSPFYNLLELIKR-ADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRV 101 (420)
T ss_pred ccCCccccccc--eeEeeHHHHHHHHhCccHHHHHHhhhh-hcCceecccchhHHHHHHHHhhccccchhhhhhhccCCc
Confidence 36799999999 599999999999999999998876552 1111 222244555555555444110
Q ss_pred ------------CCCCCcccCcHHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCC------------
Q 000344 1363 ------------TDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV------------ 1418 (1630)
Q Consensus 1363 ------------~~~~~~~vsP~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~------------ 1418 (1630)
...+..++.|..+...+.. .+.++..+.|.|.||.|||..+||.||+++......
T Consensus 102 ~~~~~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 102 PEHVVEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccccchhhhhhhcccCccccCCchhhhccc-CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 0123455666655544543 244455677999999999999999999997533110
Q ss_pred --C-----CCcccccccCC--C-Cc-c------------CCCcccccccceeEEEEEEEccCCCcccccccccceeeecc
Q 000344 1419 --S-----DTESVESNCMG--S-WD-C------------TNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNIN 1475 (1630)
Q Consensus 1419 --s-----~~es~es~~~g--s-w~-~------------~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~lI~ 1475 (1630)
. ..++.+.+..+ + |. + ....++|+.+|+|++++.+.-.+-+..-.-.+|.+.+..|.
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQ 260 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeee
Confidence 0 11111111111 0 10 1 11367899999999999887654433322223333333343
Q ss_pred hhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeEEEEEEecCC--Cccccccccccccc
Q 000344 1476 ASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNT--CESFDDITATLAAL 1553 (1630)
Q Consensus 1476 ~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhLkr~~~--~~~~~KI~~~v~~f 1553 (1630)
...+ .+.++++..+...+..---....+-.-.+..+..|.++|.+|++||+||.+ .++..|+.+.+. +
T Consensus 261 ~~~i---------~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~-~ 330 (420)
T KOG1871|consen 261 SEKI---------HSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIE-Y 330 (420)
T ss_pred cccc---------CCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhh-c
Confidence 2222 456666666554332211100011112244588899999999999998765 345567777765 9
Q ss_pred cceeccccccc--cCC-----CCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeCCHHHHHHHhhcC
Q 000344 1554 SPEIDISILYR--GLD-----PKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG 1621 (1630)
Q Consensus 1554 P~~LDLs~~~~--g~~-----~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs~Vt~Vsswe~Vl~~c~~~ 1621 (1630)
|+++.++.-+. ++. -...|+|.+||.|+| |||+.-+.+...+.|+.+||..|..+ +.++|+. -.+
T Consensus 331 ~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v-~q~dv~~--~t~ 407 (420)
T KOG1871|consen 331 PWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFV-AQEDVEK--VTG 407 (420)
T ss_pred cceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeec-cHhhhcc--ccC
Confidence 99998876543 332 235899999999999 99999999888899999999999997 6688887 444
Q ss_pred CCccccc
Q 000344 1622 HLQPQKH 1628 (1630)
Q Consensus 1622 ~~QP~vl 1628 (1630)
.-.|++|
T Consensus 408 ~r~~yll 414 (420)
T KOG1871|consen 408 SRTPYLL 414 (420)
T ss_pred ccchhee
Confidence 4556554
No 39
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.82 E-value=3.3e-20 Score=210.64 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeEEEEEEecCCCcc-ccccccccccccceeccccccccC
Q 000344 1488 ESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCES-FDDITATLAALSPEIDISILYRGL 1566 (1630)
Q Consensus 1488 ~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VLiIhLkr~~~~~~-~~KI~~~v~~fP~~LDLs~~~~g~ 1566 (1630)
..+|++||+.|+..+. |.++|+||+|||+||..... ..|+.+.|. ||..|||.+|+.+.
T Consensus 79 ~~tLedcLe~~~~~e~-------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~-fP~~Ldl~~~~~~~ 138 (241)
T cd02670 79 GITLEQCLEQYFNNSV-------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKIL-IPDEIDIPDFVADD 138 (241)
T ss_pred cCCHHHHHHHHhchhh-------------------hhhCCCeEEEEEEccccCCCcceeCCcEEC-CCCcCCchhhcccc
Confidence 4799999999876543 88999999999999887442 357777765 99999999987432
Q ss_pred -----------------------CCCCceEEEEEEEEeC-----CeEEEEEEeCC-----------CCcEEEEeCCcceE
Q 000344 1567 -----------------------DPKRRHSLVSVVCYYG-----QHYHCFAYSHD-----------QERWIMYDDKTVKV 1607 (1630)
Q Consensus 1567 -----------------------~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~-----------~~~W~~FDDs~Vt~ 1607 (1630)
.....|+|+|||+|.| ||||||||... ++.|++|||..|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~ 218 (241)
T cd02670 139 PRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRD 218 (241)
T ss_pred cccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccc
Confidence 2245899999999999 99999999764 37999999999887
Q ss_pred eC
Q 000344 1608 VG 1609 (1630)
Q Consensus 1608 Vs 1609 (1630)
+.
T Consensus 219 ~~ 220 (241)
T cd02670 219 GV 220 (241)
T ss_pred cc
Confidence 64
No 40
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.80 E-value=4.7e-19 Score=202.89 Aligned_cols=278 Identities=19% Similarity=0.188 Sum_probs=207.6
Q ss_pred ccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHH
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1630)
Q Consensus 1299 ~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~a 1378 (1630)
+.+||.|+.+ +-|.|++||+|.|.+++|.||+......+ .-..+...|..+.+++|.+.. -+..++|.++..+
T Consensus 133 G~VGLnNik~--~dy~n~vl~~ls~v~PlRnyFl~~~n~~d---~~~~lv~rl~~l~rklw~~r~--fk~hvSphe~lqa 205 (442)
T KOG2026|consen 133 GFVGLNNIKA--NDYANAVLQALSHVVPLRNYFLLEENYFD---NLTELVQRLGELIRKLWNPRN--FKGHVSPHEFLQA 205 (442)
T ss_pred eeeccchhhh--HHHHHHHHHHHhccchhhhhhcccccccc---hhHHHHHHHHHHHHHhcChhh--hcccCCHHHHHHH
Confidence 4689999985 99999999999999999999998643222 223577888999999997643 6789999999999
Q ss_pred HhhhCCCCccccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEEEEEEccCC
Q 000344 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1630)
Q Consensus 1379 L~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1630)
+..+- ...|+.++|.|+.|||.|||+.||..+.... ...|||+..|.|.++-...-..-
T Consensus 206 V~~~s--~k~f~i~~q~DpveFlswllntlhs~l~~~k-------------------~~~SIi~~~fqG~~ri~k~~~~~ 264 (442)
T KOG2026|consen 206 VMKLS--KKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-------------------KASSIIHKSFQGEVRIVKEKQGE 264 (442)
T ss_pred HHHHh--hhheecCCCCCHHHHHHHHHHHHHHHhCCCC-------------------CchhHhhHhhcceEEeeeecccc
Confidence 87763 3679999999999999999999999886531 23689999999998766443321
Q ss_pred C--cccccccccceeee---cchhhhh-h--hhhhcccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCCCeE
Q 000344 1459 G--LESRHLKYTSFFHN---INASALR-T--MKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVF 1530 (1630)
Q Consensus 1459 g--~~S~~~e~~sf~~l---I~~~~l~-~--~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP~VL 1530 (1630)
. ......-..+|+.+ +|+.++- + .+...+++.|.++|+.|.+...-.- -.-+-.++..+.++|++|
T Consensus 265 ~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~------~~~~~~~rf~l~k~P~yl 338 (442)
T KOG2026|consen 265 ASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV------VTPKLAMRFRLTKLPRYL 338 (442)
T ss_pred ccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeee------cchhhhhheeeecCCceE
Confidence 1 11111112355554 3333322 1 1234677899999999876432211 001112678899999999
Q ss_pred EEEEEecCCCcccccccccccccc-ceeccccccc----cCCCCCceEEEEEEEEeC--CeEEEEEEeCCCCcEEEEeCC
Q 000344 1531 TTVLGWQNTCESFDDITATLAALS-PEIDISILYR----GLDPKRRHSLVSVVCYYG--QHYHCFAYSHDQERWIMYDDK 1603 (1630)
Q Consensus 1531 iIhLkr~~~~~~~~KI~~~v~~fP-~~LDLs~~~~----g~~~~~~Y~L~AVVvH~G--GHY~AyvR~~~~~~W~~FDDs 1603 (1630)
|+|++||..+......+.+++.|| .++|+.++.. ....-+.|.|.|-+.|.- |||...+++...++||.++|-
T Consensus 339 ifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e~~~~riqi~~~~s~kW~eiqdl 418 (442)
T KOG2026|consen 339 IFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDEDGNFRIQIYDNSSEKWYEIQDL 418 (442)
T ss_pred EEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcccCceEEEEEeCCCcceEEeccc
Confidence 999999988777888899999999 5677776542 122347899999999987 999999999999999999999
Q ss_pred cceEeCC
Q 000344 1604 TVKVVGS 1610 (1630)
Q Consensus 1604 ~Vt~Vss 1610 (1630)
.|++..+
T Consensus 419 ~v~e~~~ 425 (442)
T KOG2026|consen 419 HVTERLP 425 (442)
T ss_pred chhhhhh
Confidence 9998754
No 41
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.2e-19 Score=211.77 Aligned_cols=276 Identities=19% Similarity=0.163 Sum_probs=186.5
Q ss_pred ccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcc---cCCchHHHHHHHHHHHHhhccCCCCCcccCcH
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---VGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1630)
Q Consensus 1297 ~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~---~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~ 1373 (1630)
..+++||.|+| ||||||+.+|||-.+|+++..+.......... .....+..++..+|..|... ..+.|.
T Consensus 102 ~~lp~gl~nlg--NtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~------~~v~pi 173 (473)
T KOG1872|consen 102 LPLPVGLPNLG--NTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK------GAVAPI 173 (473)
T ss_pred ccCCccccchh--HHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc------CCcchH
Confidence 34678999999 59999999999999999988887654221111 11236788999999999842 689999
Q ss_pred HHHHHHhhhCCCCc---cccccccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccccceeEEE
Q 000344 1374 SLRIALSNLYPDSN---FFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIF 1450 (1630)
Q Consensus 1374 ~L~~aL~ki~p~~~---~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~LF~G~l~ 1450 (1630)
.+...+.+.+|.+. ....+.||||.|++..++-.+|..+..... .......+..+|++.+.
T Consensus 174 ~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~----------------~~~~~~~~d~~f~~~~~ 237 (473)
T KOG1872|consen 174 NLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE----------------APCLEAEAAAGFGAEFS 237 (473)
T ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc----------------ccchhHHHHHhhccccc
Confidence 99999999998831 112378999999999999999997765422 11346778999999999
Q ss_pred EEEEccCCCccccccccccee---eecchhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcCccceEEEEeecCC
Q 000344 1451 ERMNCYSCGLESRHLKYTSFF---HNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPP 1527 (1630)
Q Consensus 1451 s~i~C~~Cg~~S~~~e~~sf~---~lI~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~k~~~kq~~IsrlP 1527 (1630)
.++.|..-........-+.|. +.|+-.. ..++. .....+.+.+... -+ ..+-.-...+...|+++|
T Consensus 238 ~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~-~~~k~-Gl~~~~~e~~~K~-------s~--~lgr~a~y~k~~~isrlP 306 (473)
T KOG1872|consen 238 TTMSCSEGEDEGGGAGRELVDQLKCIINKTV-HDMRF-GLKSGLSEEIQKI-------SS--ILGRPAAYQKVMYISRLP 306 (473)
T ss_pred cceeeccCcccccccccccccccceEEeeee-chhhh-hhhhhhhhhhhcc-------Cc--ccCCChHHHHHhHhhcCc
Confidence 999998766554432222222 2232110 00000 0001222222110 01 011111233567799999
Q ss_pred CeEEEEEEecCCCc---cccccccccccccceecccccccc--------------------C------------------
Q 000344 1528 HVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG--------------------L------------------ 1566 (1630)
Q Consensus 1528 ~VLiIhLkr~~~~~---~~~KI~~~v~~fP~~LDLs~~~~g--------------------~------------------ 1566 (1630)
.+|+|++.||.... ...||.+.+. ||..||.-.+|.. .
T Consensus 307 ~ylTvq~vrf~~k~k~~~~akil~~V~-fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~ 385 (473)
T KOG1872|consen 307 EYLTVQEVRFFSKAKIMVVAKILNAVN-FPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEV 385 (473)
T ss_pred ccceEEEEEEEeccccchHHHHHHhcc-ChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccc
Confidence 99999997655432 2355666544 9999998877620 0
Q ss_pred -------------CCCCceEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeC
Q 000344 1567 -------------DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVG 1609 (1630)
Q Consensus 1567 -------------~~~~~Y~L~AVVvH~G-----GHY~AyvR~~~~~~W~~FDDs~Vt~Vs 1609 (1630)
.....|+|.|||.|.| |||++++|.. ++.|++|||..|+.|.
T Consensus 386 ~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~ 445 (473)
T KOG1872|consen 386 PLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVL 445 (473)
T ss_pred cccchhccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCceeecccccccccc
Confidence 0023799999999999 9999999975 5699999999999874
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.42 E-value=6e-13 Score=165.18 Aligned_cols=296 Identities=18% Similarity=0.230 Sum_probs=177.6
Q ss_pred ccccccccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHH
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1630)
Q Consensus 1297 ~~~~~GL~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~ 1376 (1630)
.....||.--+- +-|.|++||.|+.+|++|..++. |.|..+.|+.|.|.-||.+|..+ .+..+....|.
T Consensus 496 qT~yaGLe~~i~--N~YcNamiQllyfl~~~r~~vl~-----H~C~~e~CL~CELGFLF~Ml~~S----~G~~Cqa~NFl 564 (1118)
T KOG1275|consen 496 QTTYAGLETDIP--NSYCNAMIQLLYFLPPIRSIVLR-----HICTKEFCLLCELGFLFTMLDSS----TGDPCQANNFL 564 (1118)
T ss_pred cceeeccCCCCc--hHHHHHHHHHHHhccHHHHHHHc-----CccchhHHHHHHHHHHHHHHhhh----cCCccchhHHH
Confidence 345677877775 88999999999999999999987 46777889999999999999864 33577778888
Q ss_pred HHHhhhCCCC---cccccc----------ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCcccccc
Q 000344 1377 IALSNLYPDS---NFFQEA----------QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHS 1443 (1630)
Q Consensus 1377 ~aL~ki~p~~---~~F~~g----------~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~gsw~~~~~~SiI~~ 1443 (1630)
.+|+...... ..+... .-|||.-|.....+...+ +.........++ ..+...+-+....+.+
T Consensus 565 raf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~s~~----~~~~~~~vn~~~~l~q 639 (1118)
T KOG1275|consen 565 RAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQSES----VDGESFKVNYAPVLQQ 639 (1118)
T ss_pred HHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhhhhc----ccCceeeecchhHHHH
Confidence 8776542111 011100 012333222211111110 000000000000 0011122234567899
Q ss_pred cceeEEEEEEEccCCCcccccccccceeeecchhhhhhhhhhcccCCHHHHHHHHh---cccccccCCCCCCcCccceE-
Q 000344 1444 LFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE---MNHQLACDPGAGGCEKLNYI- 1519 (1630)
Q Consensus 1444 LF~G~l~s~i~C~~Cg~~S~~~e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~---~~e~~~Cd~~c~~C~k~~~k- 1519 (1630)
.|+.....+..|..|+..+.... ......+.-..............|.+.|+.-. ..-+-.|+. |++....
T Consensus 640 ~F~~~~e~~~~Cg~C~~~~~~~k-~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~----C~k~ep~~ 714 (1118)
T KOG1275|consen 640 SFCQEIEKSLRCGECGDEKQKSK-SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCET----CTKPEPTS 714 (1118)
T ss_pred HhhhHHHHhhhcccccchhhhhh-hhhheeecCCCccchhhcccccchHHHhhhhhhccccccccccc----ccCCCCcc
Confidence 99999999999999998876532 11111111110000011122356777886533 233467874 9887543
Q ss_pred -EEEeecCCCeEEEEEEecCCC-----ccccccccccccccceecccccc------c-----------cCCCC--CceEE
Q 000344 1520 -HHILSTPPHVFTTVLGWQNTC-----ESFDDITATLAALSPEIDISILY------R-----------GLDPK--RRHSL 1574 (1630)
Q Consensus 1520 -q~~IsrlP~VLiIhLkr~~~~-----~~~~KI~~~v~~fP~~LDLs~~~------~-----------g~~~~--~~Y~L 1574 (1630)
+..+..+|.+|.|...-+... ....+..+. +.+|..+-|...- . +.++. .+|+|
T Consensus 715 q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~-vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL 793 (1118)
T KOG1275|consen 715 QKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLED-VWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYEL 793 (1118)
T ss_pred cccccccCcceeeeeeeccchhhhhhHHHhhccccc-cccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEe
Confidence 677899999999988321110 001122233 2477776665331 1 11233 58999
Q ss_pred EEEEEEeC-----CeEEEEEEe--------CCCCcEEEEeCCcceEeCCHHHH
Q 000344 1575 VSVVCYYG-----QHYHCFAYS--------HDQERWIMYDDKTVKVVGSWSDV 1614 (1630)
Q Consensus 1575 ~AVVvH~G-----GHY~AyvR~--------~~~~~W~~FDDs~Vt~Vsswe~V 1614 (1630)
.|+|+|.| +|.+++|+- +.+++||.|||..|++|+..++|
T Consensus 794 ~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl 846 (1118)
T KOG1275|consen 794 DAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEAL 846 (1118)
T ss_pred eeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHhe
Confidence 99999998 799999983 33579999999999999876665
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.27 E-value=1.6e-06 Score=97.22 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=82.1
Q ss_pred cccccccceeEEEEEEEccCCCcccccc---cccceeeecchhhhhhhhhhcccCCHHHHHHHHhcccccccCCCCCCcC
Q 000344 1438 ACIVHSLFGMDIFERMNCYSCGLESRHL---KYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE 1514 (1630)
Q Consensus 1438 ~SiI~~LF~G~l~s~i~C~~Cg~~S~~~---e~~sf~~lI~~~~l~~~~~~~~~~SL~dlLk~~~~~e~~~Cd~~c~~C~ 1514 (1630)
...|..+|...+.-...|..||+..... .-.+|-.+++.- ..+. + ...- .|..|+
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdw-----------hPLn----A---~h~~----pCn~C~ 177 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDW-----------HPLN----A---VHFG----PCNSCN 177 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCC-----------Cccc----c---cccC----CCcccC
Confidence 4557899999999999999999875321 011222222210 0000 0 0111 345798
Q ss_pred ccceE-EEEeecCCCeEEEEEEecCCCccccccccccccccceeccccccccCCCCCceEEEEEEEEeC--CeEEEEEEe
Q 000344 1515 KLNYI-HHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG--QHYHCFAYS 1591 (1630)
Q Consensus 1515 k~~~k-q~~IsrlP~VLiIhLkr~~~~~~~~KI~~~v~~fP~~LDLs~~~~g~~~~~~Y~L~AVVvH~G--GHY~AyvR~ 1591 (1630)
.+..+ +..+.+.|+||++|+.= .+|.. |+..| .-.-++..|.+.+||-+.- -|+++++++
T Consensus 178 ~ksQ~rkMvlekv~~vfmLHFVe---------------GLP~n-dl~~y-sF~feg~~Y~Vt~VIQY~~~~~HFvtWi~~ 240 (275)
T PF15499_consen 178 SKSQRRKMVLEKVPPVFMLHFVE---------------GLPHN-DLQHY-SFHFEGCLYQVTSVIQYQANLNHFVTWIRD 240 (275)
T ss_pred ChHHhHhhhhhcCchhhhhhhhc---------------cCCcc-CCCcc-ceeecCeeEEEEEEEEEeccCceeEEEEEc
Confidence 88655 67789999999999831 12222 22211 1011357999999999887 899999997
Q ss_pred CCCCcEEEEeCCcc
Q 000344 1592 HDQERWIMYDDKTV 1605 (1630)
Q Consensus 1592 ~~~~~W~~FDDs~V 1605 (1630)
. +|.|..|||-+-
T Consensus 241 ~-dGsWLecDDLkg 253 (275)
T PF15499_consen 241 S-DGSWLECDDLKG 253 (275)
T ss_pred C-CCCeEeeccCCC
Confidence 6 688999999864
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.85 E-value=0.0095 Score=63.41 Aligned_cols=93 Identities=14% Similarity=0.006 Sum_probs=84.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
.+..++..|++.+|+.....++...|.+ +.+++..|.++..+.. ...|+.+|.+|..+.|+....-
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKE-----------YTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHhcCCCCcHHH
Confidence 4678899999999999999999999999 8999999999998753 2679999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..+|.+|..+ +.|++|...+.+|+.+.
T Consensus 96 ~~lg~~l~~~----g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 96 YQTGVCLKMM----GEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhC
Confidence 9999999999 57999999999999973
No 45
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.63 E-value=0.01 Score=72.51 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1630)
.+|..++..|++.+|++...+.+...|+. +.++...|.+++.+.. +..|+..+.+|..+.|+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~-----------~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGN-----------FTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCCHHH
Confidence 45778889999999999999999999999 8888888888887632 368999999999999999999
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 142 a~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
...+|.+++.+ +.|++|...+.+|+.+. |.+|
T Consensus 73 ~~~lg~~~~~l----g~~~eA~~~~~~al~l~-P~~~ 104 (356)
T PLN03088 73 YLRKGTACMKL----EEYQTAKAALEKGASLA-PGDS 104 (356)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHhC-CCCH
Confidence 99999999999 58999999999999963 4443
No 46
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.00043 Score=88.47 Aligned_cols=323 Identities=7% Similarity=-0.168 Sum_probs=200.0
Q ss_pred CCccccccCCccccccccCCCCCCccccccccccchHHHHHHHHHHHhHHhhhhhhhhhhhhchhhHHHHhhhcCccccc
Q 000344 826 FGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAY 905 (1630)
Q Consensus 826 f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~~~~~i~~~k~~~~~~~~~idakil~~~~~~~~l~~~l~~~s~~ 905 (1630)
|.+...++|-..+.-|..+.+. .|.+.+.+|-. ....++..++..+.....+++.--+++.+.++++.-+..+.++.
T Consensus 24 ~~~~k~~s~sir~~~m~~p~~~-l~~~~~Seh~~--~~~~v~t~qs~~~le~~~l~~i~~~~~~~~~~~~~g~~l~~~~~ 100 (806)
T KOG1887|consen 24 FCDRKILSCSIRDWLMGFPVKH-LGQLEVSEHSL--DSRLVETPQSICFLENPELYQVLDFLKKIKCQRNDGTGLVCRAV 100 (806)
T ss_pred hhhhhhccCcccchhhcCCHHH-hccceeccccc--chhhhcccchhhhhccHHHHHHHHHHHhhccccccCCccccccc
Confidence 4444557777777778888888 89999999988 66778999999999999999999999999999999999999999
Q ss_pred cchhhhhHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhccCCCCCCcCccccchhhhhhhccccccCCCC
Q 000344 906 DYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKP 985 (1630)
Q Consensus 906 dyr~~ilpl~k~~l~~~L~~~~~~da~~k~~a~~~a~~a~l~l~~~k~~~~~~~~~~~~~~k~k~kkk~k~~~k~k~~k~ 985 (1630)
||.-...+..++ +|+.++..++..+..=..+++...-. .|..+..++..+..+++..++..+....+
T Consensus 101 ~~~~~~~~~~~k-----------~d~d~~~~~~~~~~rl~~~~~~~~~~-~g~~n~~~p~~~~~~~~~~~d~iiswl~~- 167 (806)
T KOG1887|consen 101 YSFFSRTRVKSK-----------IDFDAQFSVLLLDKRLLKSKGNRFDD-EGTINVFDPEAHYAKTKSQLDDIISWLED- 167 (806)
T ss_pred cceeeeeecccc-----------cCCchhhhhhhhcchhhhccCccccC-CCcccccCchHhhhhhhhhcchhhhhhhh-
Confidence 999888877654 67778888888877777888888888 88999999988888888888777777666
Q ss_pred CCCCCccccccccccccCCccCCCCCCCCCcceeccCCcchhhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000344 986 VGGNERHIVHDKTADLVSFPVESDGDNPDSETVVSANGDDLKLQ---------EEEFRRKIELEAEERKLEETLAYQRRI 1056 (1630)
Q Consensus 986 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---------~~~~~~~~~~~~e~~~~~~~~~~~~~i 1056 (1630)
..+.+.-. |..--.++.+ + .+..+-..+- ++.+++==..+++.+..-.++.+++|+
T Consensus 168 ~v~~d~~f-----------p~~~~~~nl~--~--~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~ 232 (806)
T KOG1887|consen 168 YVLENKIF-----------PRPIREHNLD--I--WMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERR 232 (806)
T ss_pred hhhccccC-----------Cchhhhccch--h--HHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhh
Confidence 33232222 1111122222 1 1111111111 122222223478888888999999999
Q ss_pred HHHHHHhhHHHhhccccccccCccccccccccCCCCCCCcccccccccCc--ccccccCCCCCCCCCCCCccccCCCccC
Q 000344 1057 ENEAKLKHLAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSS--PVQLVSKDEFPHNFEGTPVNTANGAAVP 1134 (1630)
Q Consensus 1057 e~e~k~k~~~eq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1630)
+++.+ .|.++..+... ..+... ..+...+++-|-+.. +.+...-+++..+..+-..+. .+..++
T Consensus 233 ~n~~~-----dq~~~y~~~~~-~~~qe~-------~~~~~~~~~~~~~~v~d~~~~~s~p~~~~~~~~~c~N~-~~~~~~ 298 (806)
T KOG1887|consen 233 KNKPE-----DQWLEYEQLLL-DSCQEQ-------QIEQSLQTKLFLCAVRDVLEGASSPTFAFADASDCLNL-IREHKQ 298 (806)
T ss_pred hcchH-----HHHHHHHHhch-HHHHHH-------HHHhhhhhhhHHHHHHhhhccccCCCCCccchHhhcch-hhhccc
Confidence 98877 22222222111 000000 000001111111110 011111122222222222222 233333
Q ss_pred CCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcCCCCcccccCCcccCCcccccc
Q 000344 1135 IRSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTDRRTGRRGRRHRSSNRSQDWKNQAL 1196 (1630)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~vd~k~~~~ 1196 (1630)
...-.+..+-. -+++.+.+..|++...+-+..-+....+++.+|.+.......+.+..-
T Consensus 299 ~~~~~~~~~i~---~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~ 357 (806)
T KOG1887|consen 299 EKDDAVLPSID---LLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKK 357 (806)
T ss_pred cccceecCCcc---hhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcc
Confidence 33222222111 156677778888888877777777888888888877766666665443
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.93 E-value=0.1 Score=53.86 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
.-...+..++..|++.+|+...+.++..+|.. +.++...|.+++.+.. ...|+.++.++..+.|+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKE-----------YEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCCCC
Confidence 34566788889999999999999999999998 7888888888887642 157888999999999999
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 139 l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
......+|..+... +.|++|.....+++.+
T Consensus 85 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLAL----GEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 99999999999988 5799999999999996
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.90 E-value=0.095 Score=61.60 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000344 58 KLECERALTA-LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1630)
Q Consensus 58 r~e~~~al~~-~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1630)
...-+.|+.+ +..|++++|+...+.++..||+|.+++.+|+..|.+++... +. ..|+..|...+...|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g----~~-------~~A~~~f~~vv~~yP 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG----KK-------DDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHCC
Confidence 4556677776 56799999999999999999999888999999999999763 22 588999999999999
Q ss_pred ChHHHHHH---HHHHHHHHhccCccHHHHHHHHHHhhc
Q 000344 137 HSVEFAHF---YANLLYEAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 137 ~sl~ia~~---~A~~L~~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
++....-. .|..+..+ +.|++|..-..+.+.
T Consensus 212 ~s~~~~dAl~klg~~~~~~----g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDK----GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCcchhHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence 98644433 35555555 578888877766655
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.39 E-value=0.088 Score=62.73 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
...+.-..+.|++.+|+...++.+..+|+. +.+++..|.++..... - ..|+++|.+|.++.|+...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~----~-------~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGN----F-------DAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCC----H-------HHHHHHHHHHHHhCCCCHH
Confidence 345566788899999999999999999999 8999999998887642 2 5899999999999999999
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 141 FAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 141 ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
....+|.+++.. +.|++|...+.+++.+ +|.||
T Consensus 134 a~~~lg~~l~~~----g~~~eA~~~~~~al~~-~P~~~ 166 (296)
T PRK11189 134 AYLNRGIALYYG----GRYELAQDDLLAFYQD-DPNDP 166 (296)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCH
Confidence 989999999888 5899999999999986 57777
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.00 E-value=0.26 Score=48.98 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh--
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS-- 138 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s-- 138 (1630)
-..+..+.+.|++.+|++..+.++..+|++...+-+++..|.++++.. + ...|+.+|.++..+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----K-------YADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----c-------HHHHHHHHHHHHHHCCCCCc
Confidence 456778889999999999999999999987544567777888877664 2 257999999999999996
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 139 -l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..+...+|.++..+ +.|++|.....+++..
T Consensus 75 ~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQEL----GDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHh----CChHHHHHHHHHHHHH
Confidence 45566677777776 5789999888888886
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.76 E-value=0.25 Score=65.49 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCC--hh----
Q 000344 55 GAIKLECERALTALRRGN-HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDD--LN---- 115 (1630)
Q Consensus 55 ~~ir~e~~~al~~~~~G~-h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~--~~---- 115 (1630)
-.+-..+++++..+.+-+ ..+||.++.+++.++|.. +-++++-|.+..++.+ ...+ ..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~ 125 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHT---ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFIL 125 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHH
Confidence 344455666666655544 678899999999999998 8899999988887752 1111 11
Q ss_pred -----HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccccchhhhH
Q 000344 116 -----SKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQ 189 (1630)
Q Consensus 116 -----~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v~~~~~~ 189 (1630)
.+..++..|+..+.++....|++.+.-..+|.+|..+ +.|++|..-..|+++ ++|.+|... +.++...
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~----g~~~~A~~~y~~~~~-~~p~~~~~~-~~~a~~l 198 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI----GQSEQADACFERLSR-QHPEFENGY-VGWAQSL 198 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh----cchHHHHHHHHHHHh-cCCCcHHHH-HHHHHHH
Confidence 1122455666666666666666666666666666666 356666666666666 555333333 4444433
No 52
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.75 E-value=0.14 Score=63.29 Aligned_cols=101 Identities=27% Similarity=0.357 Sum_probs=87.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
.|+..++.|..++|+.....|+..||++ +....+.|.|..++-+. ..|.+.+.+|..+.|++...=
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~-----------~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKA-----------KEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHhcCCCccHHH
Confidence 5788999999999999999999999999 88889999999877432 579999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~ 182 (1630)
.-+|.+|+.. +.+++|+++..|++. ..|.||-.-+
T Consensus 378 ~~~a~all~~----g~~~eai~~L~~~~~-~~p~dp~~w~ 412 (484)
T COG4783 378 LNLAQALLKG----GKPQEAIRILNRYLF-NDPEDPNGWD 412 (484)
T ss_pred HHHHHHHHhc----CChHHHHHHHHHHhh-cCCCCchHHH
Confidence 9999999999 468899999999887 3566665543
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.66 E-value=0.26 Score=55.45 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
.-+...|++++|+...+....-.|+. +-++...|.+.+...... ....|...+.+|..+.|+.+..-..
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHH
Confidence 34668899999999999999888988 777777777654332111 1257899999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCC
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAIENPID 177 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~D 177 (1630)
+|..+++. +.|++|+.-..++|....|.|
T Consensus 150 LA~~~~~~----g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 150 LASDAFMQ----ADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCc
Confidence 99999998 589999999999999866533
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=94.35 E-value=0.17 Score=65.50 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=67.3
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000344 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1630)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1630)
..|++.+|+..+++.....|++ +.+|...|.++.... + ...|+.+|.+|..+.|++...-..+|.+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g----~-------~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHS----E-------YIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc----C-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456778888888877777887 777777777766542 1 1357777888888888888777777777
Q ss_pred HHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 149 LYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
++.. +.|++|...+.+|+.+ +|.+|..+
T Consensus 382 l~~~----G~~~eAi~~~~~Al~l-~P~~~~~~ 409 (553)
T PRK12370 382 LFMA----GQLEEALQTINECLKL-DPTRAAAG 409 (553)
T ss_pred HHHC----CCHHHHHHHHHHHHhc-CCCChhhH
Confidence 7776 4678888778888777 46666543
No 55
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.33 E-value=0.03 Score=40.52 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=20.6
Q ss_pred EeccccccccCChHHHHHhhhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
|.|+.|++.|.+..+++.|+...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 799999999999999999998776
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.32 E-value=0.54 Score=42.64 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
.+..+...|++.+|+...++.....|.+ +.++...|.+++... -...|++++.++..+.|......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLG-----------KYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhCCCcchhHH
Confidence 4566677899999999999999888888 677888888887652 12578899999999999999888
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
...|.+++.. +.|++|..-+.+++.+
T Consensus 72 ~~~~~~~~~~----~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKL----GKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHcc
Confidence 8888888888 4689998888888765
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.21 E-value=0.3 Score=55.60 Aligned_cols=106 Identities=27% Similarity=0.298 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
..-+.-++..++.|+...|.+-+++....-|++ .++|.+.++++..+.. ...|-+.|++|+.|.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~Ge-----------~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLGE-----------NDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHhcCCC
Confidence 344667899999999999999999999777999 9999999999987752 25788999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc---cCCCCcCcc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI---ENPIDPAKE 181 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I---~~P~DPa~~ 181 (1630)
.=++--=+.--|..- +.|++|.+...+|+.- ..|.|+.+|
T Consensus 102 ~GdVLNNYG~FLC~q----g~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 102 NGDVLNNYGAFLCAQ----GRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred ccchhhhhhHHHHhC----CChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 988776666555555 4899999999999986 346666666
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.21 E-value=0.1 Score=47.28 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
.|..++..|++++|++..+.+...+|++ +.+++..|.+++.+.. ...|+..|.+++.+.|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGR-----------YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCC
Confidence 5778899999999999999999999999 9999999999997752 257889999999999985
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=93.84 E-value=0.19 Score=65.11 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000344 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1630)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1630)
-+...|++++|++..++.....|++ +.+|+..|.++..+.. ...|+..+.+|.++.|+........
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~-----------~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQ-----------LEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467899999999999999999999 8888888988886632 2579999999999999988776666
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccc
Q 000344 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1630)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~ 182 (1630)
+.+++.. +.|++|...+.+++....|.+|..+.
T Consensus 413 ~~~~~~~----g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 413 LWITYYH----TGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHhc----cCHHHHHHHHHHHHHhccccCHHHHH
Confidence 6666666 46999999999999887777777543
No 60
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.1 Score=67.45 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=59.5
Q ss_pred ccCCCCCccccchHHHHHHHhhHHHHHHHhccCCCCC--------cccCCc---hHHHHHHHHHHHHhhccCCCCCcccC
Q 000344 1303 LKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--------IHVGEP---CVVCALYEIFTALSIASTDTRKEAVA 1371 (1630)
Q Consensus 1303 L~NlGN~NTCYMNSVLQ~L~h~p~Fr~~Ll~~~~~~~--------~~~~~~---cv~~aL~~LF~~L~~ss~~~~~~~vs 1371 (1630)
|.|.| |+||.|++||+|..+|+|+--+........ ...... +-.+.+..........+. ..+.+.
T Consensus 34 l~n~g--n~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 109 (587)
T KOG1864|consen 34 LVNTG--NSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSS--SNESFN 109 (587)
T ss_pred EeecC--CchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCC--cccccc
Confidence 99999 599999999999999999977766331110 001111 111222211111111111 111222
Q ss_pred c--HHHHHHHhhhCCCCccccccccccHHHHHHHHHHHHHhhhCC
Q 000344 1372 P--TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTP 1414 (1630)
Q Consensus 1372 P--~~L~~aL~ki~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~ 1414 (1630)
+ ..+...+........-|....|+||++|+.-++-.+...+..
T Consensus 110 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 110 LSVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred chHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 2 233333322222223377789999999999988888776543
No 61
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=93.67 E-value=0.048 Score=39.64 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=21.3
Q ss_pred EeccccccccCChHHHHHhhhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
|.|+.|++.|.+...|..|+.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 6899999999999999999976 5
No 62
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.78 E-value=0.39 Score=44.32 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=61.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000344 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1630)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1630)
-+++.++..+|++.++.++.-+|.+ +.++...|.+++.+.. ...|+..+.++..+.|+......+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~-----------~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGR-----------YEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhcc-----------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678899999999999999999999 9999999999998753 2589999999999999999888887
Q ss_pred HHH
Q 000344 146 ANL 148 (1630)
Q Consensus 146 A~~ 148 (1630)
|++
T Consensus 70 a~l 72 (73)
T PF13371_consen 70 AML 72 (73)
T ss_pred Hhc
Confidence 764
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.71 E-value=0.77 Score=60.47 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh----hHHHHHhhchhhHHH-----hhccC-----------ChhH
Q 000344 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAY----VALIHRVQGTVCVKV-----ASIID-----------DLNS 116 (1630)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~----~a~~h~lqG~i~~~~-----a~~~~-----------~~~~ 116 (1630)
++.=-..|.-++.+|+.++|.++.+|.+..-|.-.. -+.++..+|.+--.+ |+-+. +-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455556678899999999999999999977776521 245555555543322 22111 2223
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 117 k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
++-+...|.-||++|..+-|...++-.-++.++-.+| .+..|+.=..+.+..
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G----~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG----DLKRAMETFLQLLQL 270 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC----hHHHHHHHHHHHHhh
Confidence 3447889999999999999999999999999999994 677886545555443
No 64
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.52 E-value=1.3 Score=58.16 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH--------
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-------- 119 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-------- 119 (1630)
-...+.-+...|++.+|+...++.....|+. +.+++..|.+++.... .+++......
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 3566677788899999999888888888888 7777888888776531 2222111111
Q ss_pred ---HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 120 ---HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 120 ---~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
-+..|+..|.+|..+.|+..+.-..+|.++... +.|++|...+.+|+.+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ----NKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcC
Confidence 135677778888888888887777778777776 46788888888888774
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.51 E-value=0.83 Score=50.00 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
..-..-+..++..|++.+|+...+++...+|++ +.++...|.+++... +. ..|+..|.++..+.|+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~----~~-------~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLG----EL-------EKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHhhCCC
Confidence 344456778889999999999999999999998 788888888887653 22 4789999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.......+|..++.. +.|++|..-+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~----g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQ----GKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhc
Confidence 988888888888877 5799999999999875
No 66
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.40 E-value=0.54 Score=62.29 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=78.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
..+.+.|++.+|+....+....+|++ +.+++..|.+++....- +++ + ..|+..|.+|..+.|+....-..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~-~eA--~----~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRS-REA--K----LQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCc-hhh--H----HHHHHHHHHHHhhCCCCHHHHHH
Confidence 34566788888888888888888888 77777778777765421 111 0 35899999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa 179 (1630)
+|.+|+.. +.|++|...+.+|+.+ .|.+|.
T Consensus 290 lg~~l~~~----g~~~eA~~~l~~al~l-~P~~~~ 319 (656)
T PRK15174 290 YADALIRT----GQNEKAIPLLQQSLAT-HPDLPY 319 (656)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 99999998 5799999999999986 355553
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.38 E-value=0.4 Score=63.50 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=76.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
++..++.|++.+|+..+....+.+|.. +-+++..|...... .+. ..|+..|.++..+.|+..+.-.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~---~~~l~~l~~~~l~~----g~~-------~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNG---RDLLRRWVISPLAS----SQP-------DAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCc---hhHHHHHhhhHhhc----CCH-------HHHHHHHHHHHHhCCCChHHHH
Confidence 477889999999999999999999998 77788777554422 222 3788888888888888888877
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
.+|.++... +.|++|...+.+|+.+ +|.+|..+
T Consensus 115 ~la~~l~~~----g~~~~Ai~~l~~Al~l-~P~~~~a~ 147 (656)
T PRK15174 115 LVASVLLKS----KQYATVADLAEQAWLA-FSGNSQIF 147 (656)
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHh-CCCcHHHH
Confidence 788887777 4688888888888887 45555544
No 68
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.75 E-value=1.8 Score=45.98 Aligned_cols=92 Identities=25% Similarity=0.344 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH--
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV-- 139 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl-- 139 (1630)
+.++.....|+..++-+.+++|+..||++.++.++....|.+++... + +..|...|..+..-.|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g----~-------~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG----D-------YDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC----C-------HHHHHHHHHHHHhhCCCHHHH
Confidence 34566667899999999999999999999888888888888888653 2 2467788888887776542
Q ss_pred HHHHH-HHHHHHHHhccCccHHHHHHHHHH
Q 000344 140 EFAHF-YANLLYEAANDGKEYEEVVQECER 168 (1630)
Q Consensus 140 ~ia~~-~A~~L~~~~~~~~~Y~ea~~e~~R 168 (1630)
.+|.+ +|.+++.. +.|++|......
T Consensus 85 ~~a~l~LA~~~~~~----~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQ----GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHh
Confidence 34443 78888877 589999888743
No 69
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.50 E-value=0.95 Score=54.53 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHhhHH-HHHHHhccCCCCCcccCCchHHHHHHHHHHHHhhccCCCCCcccCcHHHHHHHhhhCCCCcc
Q 000344 1310 YNCFLNVIIQSLWHLRR-FREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNF 1388 (1630)
Q Consensus 1310 NTCYMNSVLQ~L~h~p~-Fr~~Ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~vsP~~L~~aL~ki~p~~~~ 1388 (1630)
|+||+||++=.|=++.. |+ .-.+++++.++... .|..|..-+-... .
T Consensus 110 NNCwVna~~~~LQ~~~~~f~-------------------~~~l~~aw~~f~~G---------~~~~fVa~~Ya~~-~--- 157 (320)
T PF08715_consen 110 NNCWVNAACLQLQALKIKFK-------------------SPGLDEAWNEFKAG---------DPAPFVAWCYAST-N--- 157 (320)
T ss_dssp TTHHHHHHHHHHTTST--BS-------------------SHHHHHHHHHHHTT-----------HHHHHHHHHHT-T---
T ss_pred CCcHHHHHHHHHHhcCCccC-------------------CHHHHHHHHHHhCC---------ChHHHHHHHHHHc-C---
Confidence 79999999866643321 11 12455666666632 3444443332221 1
Q ss_pred ccccccccHHHHHHHHHHHHHh
Q 000344 1389 FQEAQMNDASEVLAVIFDCLHR 1410 (1630)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lhe 1410 (1630)
+..|+..||+++|..||+.++.
T Consensus 158 ~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 158 AKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCcCHHHHHHHHHHhccc
Confidence 5677999999999999876654
No 70
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.42 E-value=0.99 Score=59.27 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=65.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH-----------H
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-----------H 120 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-----------~ 120 (1630)
+.-.+..|++++|+...++.+..+|+. +..+...|.++..+.. ..++.+.... -
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345567899999999999999999988 6677777777765421 1111111111 1
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+..|+.+|.+|..+.|+.+..-..+|.+++.+ +.|++|...+.+|+.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE----GSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 23466666666667776666666666666665 3566676666666654
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.26 E-value=0.68 Score=42.24 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=56.0
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
|.+++..|.+++.... ...|+.+|++|..+.|+....-..+|.+++.++ +.|++|...+.+||.+
T Consensus 3 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-----------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTH-----------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHc
Confidence 6778888888887632 268999999999999999999999999999993 1699999999999986
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.05 E-value=2.5 Score=47.97 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=67.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
+.-++..|++.+|+...+++...+|++..++.+++..|.++++... +..........|+..|.++....|++...-.
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 3455666777777777777777777765445566777777765421 1111123456799999999999999864321
Q ss_pred -----------------HHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 144 -----------------FYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 144 -----------------~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..|..++.. +.|++|...+.+++..
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKR----GAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHH
Confidence 234444444 5799999999998876
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.47 E-value=2.2 Score=59.03 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..|+.+|.+|..+.|+...+-..+|.++..+ +.|++|+..+++|+.+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l----Gd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRL----DDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcC
Confidence 5678889999999999999988999999888 57899999999999874
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.47 E-value=1.2 Score=42.64 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
.|++..|+...+++....|.+. -..+.+.-|.+++.... ...|+..+.+ ....|..+.+...+|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~-----------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGK-----------YEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTH-----------HHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCC-----------HHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998531 13333446777776642 2678888888 888899999999999999
Q ss_pred HHHhccCccHHHHHHHHHHh
Q 000344 150 YEAANDGKEYEEVVQECERA 169 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RA 169 (1630)
+.+ +.|++|..-..+|
T Consensus 69 ~~l----~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKL----GKYEEAIKALEKA 84 (84)
T ss_dssp HHT----T-HHHHHHHHHHH
T ss_pred HHh----CCHHHHHHHHhcC
Confidence 999 5799998776654
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=89.92 E-value=1.5 Score=49.34 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
.++..+++..++.....+|++ +-.+..-|.++.... +. ..|+++|.+|..+.|+..++...+|.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g----~~-------~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN----DY-------DNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888889988899999 778888888888653 22 5899999999999999999999999988
Q ss_pred HHHhccCccHHHHHHHHHHhhcccCCCCcCc
Q 000344 150 YEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~ 180 (1630)
+....+ ..|++|..-..+||.+. |.+|..
T Consensus 118 ~~~~g~-~~~~~A~~~l~~al~~d-P~~~~a 146 (198)
T PRK10370 118 YYQAGQ-HMTPQTREMIDKALALD-ANEVTA 146 (198)
T ss_pred HHhcCC-CCcHHHHHHHHHHHHhC-CCChhH
Confidence 655321 13799999999999973 444443
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.42 E-value=1.6 Score=50.78 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=79.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
..+..+++||+..|+..+.+++.--|.. |.++..-|-++.++.+. ..|...|.+|..|+||.-.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~-----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRF-----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccCh-----------hHHHHHHHHHHHhccCCchhh
Confidence 6678899999999999999999888999 99999999888877642 467788999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
-=+|++++.- ++++.|++...+|..-
T Consensus 172 nNlgms~~L~----gd~~~A~~lll~a~l~ 197 (257)
T COG5010 172 NNLGMSLLLR----GDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 9999999888 5799999888888763
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.93 E-value=2.9 Score=45.66 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
--..+..+...|++.+|+...++.+..+|.....+.+++..|.+++.+.. ...|+.+|.+|..+.|+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-----------HDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcccH
Confidence 34556778889999999999999987776542225677777888876642 2578889999999999998
Q ss_pred HHHHHHHHHHHHHhcc---CccHHHHHHHHHHhh
Q 000344 140 EFAHFYANLLYEAAND---GKEYEEVVQECERAL 170 (1630)
Q Consensus 140 ~ia~~~A~~L~~~~~~---~~~Y~ea~~e~~RAL 170 (1630)
.....++.+++..++. .+.+++|.....+|+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 8888888888887542 124554444444433
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.84 E-value=1.7 Score=54.04 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=65.0
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000344 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1630)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1630)
..++..+|++.+.+....+|.+ +.++.+|+..+.+... | .-|+.++.+|+.++|+..+.=..+|..
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~----------~-~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKK----------Y-ELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCC----------H-HHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566778888888888777877 7777788777775532 1 689999999999999999999999999
Q ss_pred HHHHhccCccHHHHHHHH
Q 000344 149 LYEAANDGKEYEEVVQEC 166 (1630)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~ 166 (1630)
++.+ ++|++|..-.
T Consensus 278 Yi~~----~d~e~ALlaL 291 (395)
T PF09295_consen 278 YIQL----GDFENALLAL 291 (395)
T ss_pred HHhc----CCHHHHHHHH
Confidence 9999 6899998544
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.29 E-value=1.2 Score=40.35 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
...|+.+|.++....|++.+.-..+|.+++.. +.|++|..-..+++.+ .|.+|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~-~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALEL-DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH-CcCCC
Confidence 36899999999999999999999999999998 5899999889888876 35554
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.14 E-value=0.87 Score=53.78 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 114 ~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..+|..-...||+.|.+|..|.|+.-++..=+|-++..| +.|+.|+..|+.||.|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhc
Confidence 445555558999999999999999999999999999999 6899999999999998
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.86 E-value=6.6 Score=44.32 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
.-.-|...++.|++.+|+...++++..||+|..++-+++..|..++.+....-..+-.......|+..|..-+...|||-
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 34556778899999999999999999999998889999999999998865430112335678899999999999999997
Q ss_pred HHH
Q 000344 140 EFA 142 (1630)
Q Consensus 140 ~ia 142 (1630)
-..
T Consensus 125 y~~ 127 (203)
T PF13525_consen 125 YAE 127 (203)
T ss_dssp THH
T ss_pred HHH
Confidence 443
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.61 E-value=2.7 Score=56.00 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..|.++|.++....|+.-..-..+|.+|-++ |.+++|+.-+++|+...
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~----G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRR----GALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999 57899999999999874
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.55 E-value=1.7 Score=39.59 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1630)
...+..++..|++.+|+...++.+..+|+. +.++...|.+++.+.. + ...|+.++.+|..|.|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~---~-------~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGK---D-------YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTT---H-------HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCc---c-------HHHHHHHHHHHHHcCc
Confidence 456788899999999999999999999999 8999999999998741 1 1589999999999988
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=87.51 E-value=9.1 Score=46.12 Aligned_cols=110 Identities=22% Similarity=0.146 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHH---HHHhhchhhHH---Hhhc-----cCChh---HHH----H--
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVAL---IHRVQGTVCVK---VASI-----IDDLN---SKQ----R-- 119 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~---~h~lqG~i~~~---~a~~-----~~~~~---~k~----~-- 119 (1630)
...+++.++..|++.+|++..+++...+|.+..+.. .+...|...-+ +... -.++. ... .
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 445678889999999999999999999999832211 22222221100 0000 11111 111 0
Q ss_pred ---HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 120 ---HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 120 ---~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
.+..|+..+.++..+.|+.....+.+|.++++. +.|++|..-+.+++...
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~----g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ----GRFKEGIAFMESWRDTW 178 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHhhhhcc
Confidence 156799999999999999999999999999998 57999999999999864
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.15 E-value=2.9 Score=56.59 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1630)
..|.-+...|+..+|++.++++....|+. +.++...|.+..... ++ ..|+..+.+|..+.|+...+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g----~~-------~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARG----WP-------RAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHhhCCCChHH
Confidence 44556778899999999999999999999 777777777666543 23 58999999999999999998
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 142 a~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
=...|..+..+ +.|++|++...++++. .|-+|...
T Consensus 430 ~~~~a~~al~~----~~~~~A~~~~~~ll~~-~Pd~~~~~ 464 (765)
T PRK10049 430 EVEQAWTALDL----QEWRQMDVLTDDVVAR-EPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 77777777666 5799999999999985 46666444
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=86.76 E-value=1.7 Score=39.46 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000344 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1630)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1630)
++..|++.+|++..+++...+|++ +-+...-|.++++... +..|...+.++....|+...+..++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~-----------~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQ-----------YDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 467899999999999999999999 7777777888776642 25788999999999999877777776
Q ss_pred HH
Q 000344 147 NL 148 (1630)
Q Consensus 147 ~~ 148 (1630)
.+
T Consensus 67 ~i 68 (68)
T PF14559_consen 67 QI 68 (68)
T ss_dssp HH
T ss_pred cC
Confidence 53
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.65 E-value=8.5 Score=43.42 Aligned_cols=70 Identities=27% Similarity=0.401 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
=..|+..+..|++.+|++..+++..+||+|..++.+....|..++... + ...|+..|.+-..+.|++-.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~----~-------y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG----D-------YEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHCCCCcc
Confidence 356789999999999999999999999999999999998899888663 2 35789999999999999874
Q ss_pred H
Q 000344 141 F 141 (1630)
Q Consensus 141 i 141 (1630)
+
T Consensus 78 ~ 78 (203)
T PF13525_consen 78 A 78 (203)
T ss_dssp H
T ss_pred h
Confidence 3
No 88
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.45 E-value=2.6 Score=45.23 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----ccCChhHHHHHHHHHHHHHHHHhhh
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----IIDDLNSKQRHLKNAIESAKKAAEL 134 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1630)
.+-.-+-..+.+|++++|++-+++++.-||.+..|.-|.+..|..++++.. ..-..+.-..+.+.|+..|.+-+.-
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 344445567788889999989999998898888888888888988888753 0002222255778899999999999
Q ss_pred CCChHH
Q 000344 135 SPHSVE 140 (1630)
Q Consensus 135 ~P~sl~ 140 (1630)
.|||--
T Consensus 129 yP~S~y 134 (142)
T PF13512_consen 129 YPNSEY 134 (142)
T ss_pred CcCChh
Confidence 999854
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.21 E-value=4.5 Score=45.94 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
..--..+..++..|+..+|+...++++..+|.+.....++...|.++++.. +. ..|+..|.++.++.|+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----~~-------~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----DY-------AEAIAAADRFIRLHPN 102 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHHHCcC
Confidence 344566778889999999999999999999998554567888898888763 22 5899999999999999
Q ss_pred hHHH---HHHHHHHHHHHhc----cCccHHHHHHHHHHhhcc
Q 000344 138 SVEF---AHFYANLLYEAAN----DGKEYEEVVQECERALAI 172 (1630)
Q Consensus 138 sl~i---a~~~A~~L~~~~~----~~~~Y~ea~~e~~RAL~I 172 (1630)
.... -..++..++.... ..+.|++|.....+++..
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 8874 3344566655411 114688898888888765
No 90
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=85.99 E-value=3.2 Score=57.50 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa 179 (1630)
..|+.+|.+|..+.|+....-.-+|.+|... +.|++|..-+.+|+.+ .|.+|.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~----G~~eeAi~~l~~AL~l-~P~~~~ 678 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDS----GDIAQSREMLERAHKG-LPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 4577788888888888887777777777777 4678888888888876 355543
No 91
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.72 E-value=5.1 Score=43.72 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----------ccC----ChhHHH--------
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----------IID----DLNSKQ-------- 118 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----------~~~----~~~~k~-------- 118 (1630)
...+.-....|++++|++..++....+|.. +.++...|.+++.... .++ +.....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345667788899999999999998888876 4455544555443320 000 000000
Q ss_pred ---HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 119 ---RHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 119 ---~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
--+..|...+.++..+.|+.......+|.+++.. +.|++|..-..+++.+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR----GQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 0134588888888888888888877888888877 5788888888888877
No 92
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.44 E-value=3.4 Score=55.08 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000344 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1630)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1630)
+...|++.+|++.+++.....|.+ +.++.+.|.+++... ....|+.+|.++..+.|+.......+|
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 169 ALAENRFDEARALIDEVLTADPGN---VDALLLKGDLLLSLG-----------NIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344455555555555544444444 444444444444321 124678888888889999888888888
Q ss_pred HHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 147 NLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 147 ~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.+++.. +.|++|...+.+++.+
T Consensus 235 ~~~~~~----g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 235 TILIEA----GEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHc----CCHHHHHHHHHHHHHh
Confidence 888877 5788888888888775
No 93
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.06 E-value=2.4 Score=45.41 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1630)
.+|...++.|++.+|.+..++|-.+||.+.++..+..-.|+.+|+.. +- ..|+..+.+-++|.|++-.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~----~y-------~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG----DY-------EEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc----CH-------HHHHHHHHHHHHhCCCCCCc
Confidence 34556678899999999999999999999888888888899998764 22 47899999999999999863
Q ss_pred HHHHHHHHHHH
Q 000344 142 AHFYANLLYEA 152 (1630)
Q Consensus 142 a~~~A~~L~~~ 152 (1630)
-+|.-+..|
T Consensus 84 --dYa~Y~~gL 92 (142)
T PF13512_consen 84 --DYAYYMRGL 92 (142)
T ss_pred --cHHHHHHHH
Confidence 344444455
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.02 E-value=6 Score=42.86 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
...+...+..|++++|+...+.....+|++...+.++.-.|.++.... + ...|+.+|.+|..+.|+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g----~-------~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG----E-------HTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCcCcHH
Confidence 455678888999999999999887666654222456666677776553 2 24788889999999999988
Q ss_pred HHHHHHHHHHHHhc---cCccHHHHHHHHHHhhcc
Q 000344 141 FAHFYANLLYEAAN---DGKEYEEVVQECERALAI 172 (1630)
Q Consensus 141 ia~~~A~~L~~~~~---~~~~Y~ea~~e~~RAL~I 172 (1630)
.-..+|.++..+|. ..+.|++|..-+.+|+.+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 87788888885552 124677776666666654
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.56 E-value=3.4 Score=48.19 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
-=+.|...+..|++++|++.-+++...||+|..+..+....|..+++.. + ...|+..|.+...+.|++-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~----~-------y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA----D-------LPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHhCcCCC
Confidence 3377888999999999999999999999999777777778888888764 2 3689999999999999998
Q ss_pred HH
Q 000344 140 EF 141 (1630)
Q Consensus 140 ~i 141 (1630)
.+
T Consensus 104 ~~ 105 (243)
T PRK10866 104 NI 105 (243)
T ss_pred ch
Confidence 66
No 96
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=84.48 E-value=5 Score=49.99 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=47.0
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000344 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1630)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1630)
..|+..+|+++++++..+||++ +.++...|.+++..-. ...|.+.|.++..+.|+... .+.+|.+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~---~~l~l~lgrl~~~~~~-----------~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDT---PLLWSTLGQLLMKHGE-----------WQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 3355666666666666666666 5666666666654421 13455566666666666543 2345555
Q ss_pred HHHHhccCccHHHHHHHHHHhhcc
Q 000344 149 LYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+-..+ .-++|..-.++||..
T Consensus 371 ~~~~g----~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRLH----KPEEAAAMRRDGLML 390 (398)
T ss_pred HHHcC----CHHHHHHHHHHHHhh
Confidence 55553 345555555555543
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.84 E-value=10 Score=39.66 Aligned_cols=95 Identities=19% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC---h
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH---S 138 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~---s 138 (1630)
+.|-..+.-|++.+|+..-....+.-.....-..+..-.|..+..+. .. ..|+..++++..-+|+ +
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG----~~-------deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG----RY-------DEALALLEEALEEFPDDELN 74 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHCCCcccc
Confidence 45667778899999998888876532222111222222333333332 33 4788888999999999 8
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000344 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 139 l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
-.+.+|+|..|+.+ +.+++|+..+-++|+
T Consensus 75 ~~l~~f~Al~L~~~----gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNL----GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Confidence 89999999999999 478999999988876
No 98
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=6.2 Score=46.92 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000344 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1630)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~ 152 (1630)
+...+.+++.-...||++ +-=.-+-|.+++.+.+ ...|+.+|++|.+|.|+..++...+|..|+..
T Consensus 138 ~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~-----------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 138 MEALIARLETHLQQNPGD---AEGWDLLGRAYMALGR-----------ASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcc-----------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 566667777777788888 4444566777776642 25799999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHhhcc
Q 000344 153 ANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 153 ~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+. ++.=.++..-.+.||..
T Consensus 204 a~-~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 204 AG-QQMTAKARALLRQALAL 222 (287)
T ss_pred cC-CcccHHHHHHHHHHHhc
Confidence 84 34555565556677764
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.45 E-value=8.2 Score=48.24 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
+.-.+++..+..|+...|.+.+.+.....|+. .+...+.|.+.... .+. ..|...+.+|.+..|+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~----g~~-------~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQR----GDE-------ARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHhCCcC
Confidence 34566788899999999999998877555655 55555556665544 233 36777777788888998
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 139 -l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
+.+-..+|++++.. +.|+.|.....+.+.. .|.+|...
T Consensus 152 ~l~~~~~~a~l~l~~----~~~~~Al~~l~~l~~~-~P~~~~~l 190 (409)
T TIGR00540 152 NILVEIARTRILLAQ----NELHAARHGVDKLLEM-APRHKEVL 190 (409)
T ss_pred chHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 45656678888887 5799999999888887 48877544
No 100
>PRK11906 transcriptional regulator; Provisional
Probab=81.90 E-value=4.9 Score=50.44 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHH
Q 000344 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1630)
Q Consensus 72 ~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~ 151 (1630)
+..+|++.|+.-.+--|++ |.+|..-|++..-.+. +..|...|.+|..|.||+.....++|.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~~~-----------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 319 AAQKALELLDYVSDITTVD---GKILAIMGLITGLSGQ-----------AKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhcc-----------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4566777777777666888 8888888887664431 3678999999999999999999999999999
Q ss_pred HhccCccHHHHHHHHHHhhcc
Q 000344 152 AANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 152 ~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
. |..++|.....+||..
T Consensus 385 ~----G~~~~a~~~i~~alrL 401 (458)
T PRK11906 385 N----EKIEEARICIDKSLQL 401 (458)
T ss_pred c----CCHHHHHHHHHHHhcc
Confidence 8 4789999999999985
No 101
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=81.78 E-value=5.6 Score=56.41 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=72.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
++.+...|++.+|+...++....+|++ +-++...|.+++... + ...|+.+|.+|..+.|+......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g----~-------~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD---SEALGALGQAYSQQG----D-------RARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCccchhH
Confidence 566788999999999999999999999 888888898888663 2 24789999999999998754211
Q ss_pred --------------HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 144 --------------FYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 144 --------------~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
..|..++. .+.|++|...+.+|+.+ .|.++
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~Al~~-~P~~~ 385 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALK----ANNLAQAERLYQQARQV-DNTDS 385 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh-CCCCH
Confidence 11223333 36899999999999998 34443
No 102
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=81.69 E-value=6.2 Score=53.46 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=55.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
..+...|++.+|++..+++.+..|.+ +-++...|.++.+.. +. ..|+..+.+++.+.|+... ...
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g----~~-------~eA~~~l~~~l~~~P~~~~-~~~ 121 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADAG----QY-------DEALVKAKQLVSGAPDKAN-LLA 121 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHH-HHH
Confidence 44556667777777777766666666 444444444443321 11 3567777777777777777 666
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+|.++... +.+++|+....+++.+
T Consensus 122 la~~l~~~----g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 122 LAYVYKRA----GRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 66666655 4567777777777775
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.68 E-value=16 Score=39.89 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=73.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
-|-.+...|+.++|.+.-.=|+.--|.. +.-..--|-++.... -+..|+++|.+|..|.||..+.-
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g-----------~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQK-----------HWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCchHH
Confidence 3467788899999999888888777777 555555566655443 34789999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
-..|..++.++ ..+.|..-.+.|+.+.
T Consensus 107 ~~ag~c~L~lG----~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACD----NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHHh
Confidence 99999999995 5677877777788875
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.56 E-value=9.8 Score=46.40 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1630)
-+..+...|++++|++..+++....|.+ +.++...|.++...
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 227 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHC
Confidence 4455667888888888888888777776 55666666666554
No 105
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.50 E-value=9.5 Score=46.52 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhh--HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYV--ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~--a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1630)
.-..-+.-+...|++.+|++..+.+...+|..... +..+...|.++++.. +. ..|+..|.++..+.|
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~-------~~A~~~~~~al~~~p 211 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG----DL-------DAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC----CH-------HHHHHHHHHHHhHCc
Confidence 33445566778899999999999999888765221 223344555555432 22 366677777777777
Q ss_pred ChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 137 ~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+.++....+|.++... +.|++|..-..+++.+
T Consensus 212 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 212 QCVRASILLGDLALAQ----GDYAAAIEALERVEEQ 243 (389)
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 7777666677666666 4677777777777765
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.35 E-value=3.6 Score=37.86 Aligned_cols=48 Identities=33% Similarity=0.500 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..|+.++.++..+.|+++..-..+|.+++.+ +.|++|...+.+++.+.
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQL----GRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHh----ccHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999999 57999999999999863
No 107
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.47 E-value=6.6 Score=55.70 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=47.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
.|-.+...|+.++|++.++ .||.+ +.++...|.++.+.. + ...|+++|.++..+.|+..+.-
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p~~---~~~~~~La~~~~~~g----~-------~~~A~~~y~~al~~~P~~~~a~ 640 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQPPS---TRIDLTLADWAQQRG----D-------YAAARAAYQRVLTREPGNADAR 640 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCCCC---chHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCCHHHH
Confidence 3455667777777776544 57777 566666666665442 1 1345555555555555555444
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
..+|.+++.. +.|++|...+.+++.
T Consensus 641 ~~la~~~~~~----g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 641 LGLIEVDIAQ----GDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHhc
Confidence 4444444444 345555544444443
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=79.19 E-value=5.6 Score=46.67 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
..|+.+|.+|..+.|+...+...++.+|+.. +.++++..-+.+..... |.||.-.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~----~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDM----GDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHHHC-cCHHHHH
Confidence 4789999999999999999888888888877 45666433333333332 7777655
No 109
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=78.87 E-value=5.5 Score=46.78 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=62.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
.-..+.|+.++|++..++.....|++ ..++..-+.+..+.. +. .-++.++..+.++. |+...+-..
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~li~~~----~~----~~~~~~l~~~~~~~---~~~~~~~~~ 219 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLLIDMG----DY----DEAREALKRLLKAA---PDDPDLWDA 219 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTC----HH----HHHHHHHHHHHHH----HTSCCHCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCC----Ch----HHHHHHHHHHHHHC---cCHHHHHHH
Confidence 44567788889998888888888887 555554444443222 11 11344555555555 555556677
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
+|.+++.+ +.|++|..-..+++. .+|.||.-.
T Consensus 220 la~~~~~l----g~~~~Al~~~~~~~~-~~p~d~~~~ 251 (280)
T PF13429_consen 220 LAAAYLQL----GRYEEALEYLEKALK-LNPDDPLWL 251 (280)
T ss_dssp HHHHHHHH----T-HHHHHHHHHHHHH-HSTT-HHHH
T ss_pred HHHHhccc----ccccccccccccccc-ccccccccc
Confidence 89999999 579999988988887 467777766
No 110
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=78.50 E-value=1.5 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.9
Q ss_pred EeccccccccCChHHHHHhhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~ 411 (1630)
|.|..|.+.|.+...+..|+..+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999653
No 111
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=78.21 E-value=8.3 Score=51.46 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000344 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1630)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1630)
..+.-...|...+..|++++|+...+.....+|.+ +-+++..|.++..+.. - ..|+..+.++..+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~----~-------~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGD----Y-------AAAEKELRKALSLG 86 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHcC
Confidence 34556778889999999999999999999999999 8899999999987642 2 46888888888899
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Q 000344 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECER 168 (1630)
Q Consensus 136 P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~R 168 (1630)
|+.......+|++++.. +.|++|...+..
T Consensus 87 ~~~~~~~~~~a~~~~~~----g~~~~a~~~~~~ 115 (899)
T TIGR02917 87 YPKNQVLPLLARAYLLQ----GKFQQVLDELPG 115 (899)
T ss_pred CChhhhHHHHHHHHHHC----CCHHHHHHhhcc
Confidence 98888888888888887 468888765543
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=78.12 E-value=13 Score=40.38 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
..-++-+...|++.+|++..+.....+|.. +-.|..-|.+++.+++ ...+......++..|+..|.++..+.|+
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 334567778899999999999988888887 6667777888887663 3445555567888999999999999998
Q ss_pred hH
Q 000344 138 SV 139 (1630)
Q Consensus 138 sl 139 (1630)
..
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 76
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=77.64 E-value=5.4 Score=36.10 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
...|+..|.++....|+..++-..+|.+++.. +.|++|...+.+++..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999 5799999999888774
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=77.36 E-value=9.5 Score=39.20 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=65.1
Q ss_pred HHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccH
Q 000344 80 MKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEY 159 (1630)
Q Consensus 80 ~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y 159 (1630)
.+.+.+.+|+. +.++...|..++.... ...|+..+.++..+.|+....-..+|..++.. +.|
T Consensus 6 ~~~~l~~~p~~---~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~ 67 (135)
T TIGR02552 6 LKDLLGLDSEQ---LEQIYALAYNLYQQGR-----------YDEALKLFQLLAAYDPYNSRYWLGLAACCQML----KEY 67 (135)
T ss_pred HHHHHcCChhh---HHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----HHH
Confidence 55666788887 6777888888776531 25788999999999999999999999999999 579
Q ss_pred HHHHHHHHHhhcccCCCCcCcc
Q 000344 160 EEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 160 ~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
.+|...+.+++.+. |.+|..+
T Consensus 68 ~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 68 EEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHhcC-CCChHHH
Confidence 99999999998873 4444333
No 115
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.35 E-value=19 Score=44.59 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=64.4
Q ss_pred HHHHHHH---cCCHHHHHHHHHH-HHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 63 RALTALR---RGNHKKALRLMKE-LSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 63 ~al~~~~---~G~h~kAL~~~~e-L~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
-|+.+-| .|++.+|+..+.. |....+.+ +=...+-|.|+.++.......+ ..+|..|.++|.+|-++.|+-
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~---~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPD---PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCccc
Confidence 4567777 8999999999999 77777777 8899999999999865433333 345999999999999999753
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000344 139 VEFAHFYANLLYEAAND 155 (1630)
Q Consensus 139 l~ia~~~A~~L~~~~~~ 155 (1630)
=...=+|.+|...|.+
T Consensus 260 -Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 260 -YSGINAATLLMLAGHD 275 (374)
T ss_pred -cchHHHHHHHHHcCCc
Confidence 2222234456666544
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=77.26 E-value=9.4 Score=44.53 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-------ccCChhHHHHHHHHHHHHHHHHhh
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-------IIDDLNSKQRHLKNAIESAKKAAE 133 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-------~~~~~~~k~~~L~~Al~~~~~A~~ 133 (1630)
-.-|.-.++.|++.+|+...++++..||++..++-+++..|..++.+.. .++..+--....+.|+..+.+-+.
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~ 152 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR 152 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH
Confidence 3444566899999999999999999999999999999999988776642 122333335577899999999999
Q ss_pred hCCChH
Q 000344 134 LSPHSV 139 (1630)
Q Consensus 134 L~P~sl 139 (1630)
..|||-
T Consensus 153 ~yP~S~ 158 (243)
T PRK10866 153 GYPNSQ 158 (243)
T ss_pred HCcCCh
Confidence 999994
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.02 E-value=11 Score=40.31 Aligned_cols=78 Identities=12% Similarity=-0.041 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
...+.-+.+.|++.+|+......+...|+. +.+|+-.|.++..+.. . ..|+.+|.+|..+.|+..+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~----~-------~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGE----P-------GLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhCCCChH
Confidence 344566788899999999999999999999 8999999999987753 2 4799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000344 141 FAHFYANLLYEA 152 (1630)
Q Consensus 141 ia~~~A~~L~~~ 152 (1630)
.....+.++..+
T Consensus 128 ~~~~~~~~~~~l 139 (144)
T PRK15359 128 WSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHH
Confidence 998888877766
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=76.99 E-value=11 Score=46.49 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
...|..+...|++.+|+..++.++...|.. +.+|+..|.+++.+.. +..|+.+|.+|..+.|+...
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~-----------~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEE-----------YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Confidence 456677888999999999999999999999 8889999999987642 25899999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 000344 141 FAHFYANLLYEAA 153 (1630)
Q Consensus 141 ia~~~A~~L~~~~ 153 (1630)
+...++...-.+.
T Consensus 106 ~~~~l~~~~~kl~ 118 (356)
T PLN03088 106 FTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766664
No 119
>PHA00616 hypothetical protein
Probab=76.32 E-value=1.4 Score=37.90 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.5
Q ss_pred eccccccccCChHHHHHhhhhhhcc
Q 000344 390 VCCRCNEKFADSESHMHHVVQQHMG 414 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl~~~H~~ 414 (1630)
.|+.||+.|....++..|+..-|-.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 6999999999999999999777755
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=76.20 E-value=12 Score=45.00 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
..-.++-+...|++.+|+...++.+...|.+ +.+++.-|+++++... +..|+..+.++..+.|...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~-----------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGR-----------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCC-----------HHHHHHHHHhhhhccCCCc
Confidence 3445567788999999999999999999999 7788888999997652 2467888888888887543
Q ss_pred HH----HHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 140 EF----AHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 140 ~i----a~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.. ...+|..++.. |.|++|.....+++..
T Consensus 183 ~~~~~~~~~la~~~~~~----G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 183 MLRGHNWWHLALFYLER----GDYEAALAIYDTHIAP 215 (355)
T ss_pred chhHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcc
Confidence 32 12456666666 5899999888888654
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=75.83 E-value=26 Score=47.05 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=88.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000344 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1630)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1630)
.+.|..-+-.+-+.+.+..|+..+||+....|-.+||++ .-+..+-|.++.++.+. .-|+.|+..-
T Consensus 4 ~~~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~-----------~ea~~~Le~~ 69 (932)
T KOG2053|consen 4 AELAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKG-----------DEALKLLEAL 69 (932)
T ss_pred hhhccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCc-----------hhHHHHHhhh
Confidence 555677778888999999999999999999999999998 66777888888887653 2455666667
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcccc
Q 000344 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1630)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v 183 (1630)
..+-++.-.+--++-..+-++ +.|++|+.=..||+.. +|.++++
T Consensus 70 ~~~~~~D~~tLq~l~~~y~d~----~~~d~~~~~Ye~~~~~----~P~eell 113 (932)
T KOG2053|consen 70 YGLKGTDDLTLQFLQNVYRDL----GKLDEAVHLYERANQK----YPSEELL 113 (932)
T ss_pred ccCCCCchHHHHHHHHHHHHH----hhhhHHHHHHHHHHhh----CCcHHHH
Confidence 778888777777777777777 5789999889999874 6777755
No 122
>PRK11189 lipoprotein NlpI; Provisional
Probab=75.48 E-value=8.8 Score=45.85 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHccCchh-hHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 71 GNHKKALRLMKELSSRHENSAY-VALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 71 G~h~kAL~~~~eL~~~h~~S~~-~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
+....|++++.+++.+.+-+.. -+.+|+..|.++..... ...|+..|.+|..+.|+....-..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-----------~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-----------RALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455677777777765543211 16778888888776642 24788899999999999999999999988
Q ss_pred HHHhccCccHHHHHHHHHHhhccc
Q 000344 150 YEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
... +.|++|.....+||.+.
T Consensus 109 ~~~----g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 109 TQA----GNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHC----CCHHHHHHHHHHHHHhC
Confidence 888 58999999999999973
No 123
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=75.31 E-value=1.2 Score=50.64 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=25.7
Q ss_pred CccceEeccccccccCChHHHHHhhhhhhccCc
Q 000344 384 KTWRFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1630)
Q Consensus 384 ~sW~fWiCp~C~~kF~d~~s~~~Hl~~~H~~~~ 416 (1630)
..|+ |.||.|+|+|.-.+=-..|+..+|...+
T Consensus 74 ~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 74 DEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp SSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred cCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 6676 9999999999999999999999998654
No 124
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.22 E-value=24 Score=41.72 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
++=..|++++..|++..|...-.+.+.++|+|.+.+.+|+--|..+|.+..- ..|...|.....-.|.|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------EDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------hHHHHHHHHHHHhCCCC
Confidence 3788999999999999999999999999999999999999999999988521 34445555555566665
Q ss_pred H---HHHHHHHHHHHHHhcc
Q 000344 139 V---EFAHFYANLLYEAAND 155 (1630)
Q Consensus 139 l---~ia~~~A~~L~~~~~~ 155 (1630)
- +--.=+|..+..+++.
T Consensus 212 ~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred CCChHHHHHHHHHHHHhcCH
Confidence 4 5566678888888654
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.02 E-value=24 Score=44.55 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000344 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1630)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1630)
..-.-...+..++..|++++|+...+..+...|++..+..+|+-.|..+..+.. +..|++++.+|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-----------~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-----------GKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhc
Confidence 344556678899999999999999999998999982222557777887776642 257888888888874
No 126
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=73.48 E-value=23 Score=44.37 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhcc--CChhHHHHHHHHHHHHHHHHhhh
Q 000344 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASII--DDLNSKQRHLKNAIESAKKAAEL 134 (1630)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~--~~~~~k~~~L~~Al~~~~~A~~L 134 (1630)
.+-....|..+...|++++|++.+.+....+|.+ ....+. .+...... ++. ..++..+.++...
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~~~~~~----~l~~~~~l~~~~~-------~~~~~~~e~~lk~ 328 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---RAISLP----LCLPIPRLKPEDN-------EKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---ccchhH----HHHHhhhcCCCCh-------HHHHHHHHHHHHh
Confidence 4445556678899999999999999999999988 321100 11111111 222 3678889999999
Q ss_pred CCChH--HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 135 SPHSV--EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 135 ~P~sl--~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.|+.. .+...+|.+++.. +.|++|....++|.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~----~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKH----GEFIEAADAFKNVAAC 364 (409)
T ss_pred CCCChhHHHHHHHHHHHHHc----ccHHHHHHHHHHhHHh
Confidence 99999 8888999999988 5799999988865554
No 127
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.42 E-value=7 Score=50.53 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=82.0
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCC-----------hhHHHHHHHHHHH
Q 000344 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDD-----------LNSKQRHLKNAIE 126 (1630)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~-----------~~~k~~~L~~Al~ 126 (1630)
.++|+.|++-.+..+...|+- +-+|-|+||-|...-. +.++ -..|+.=+..|.-
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 478999999999999899988 7899999998875521 1111 1223333456777
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCc
Q 000344 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1630)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~ 180 (1630)
.|.+|+...|.+.+|..-+...+..+ +.+++|..-..+|+.+ +|.||..
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~----k~~d~AL~~~~~A~~l-d~kn~l~ 559 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL----KRKDKALQLYEKAIHL-DPKNPLC 559 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh----hhhhHHHHHHHHHHhc-CCCCchh
Confidence 89999999999999999999999999 6899999999999987 4777754
No 128
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.92 E-value=2.5 Score=37.72 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.6
Q ss_pred eccccccccCChHHHHHhhhhhhccC
Q 000344 390 VCCRCNEKFADSESHMHHVVQQHMGN 415 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl~~~H~~~ 415 (1630)
.||+|++ ..|..+|+.|+.++|..+
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSE 28 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCC
Confidence 5999999 678899999999999975
No 129
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=72.57 E-value=1.9 Score=38.46 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.4
Q ss_pred ceEeccccccccCChHHHHHhhhhhhccCc
Q 000344 387 RFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1630)
Q Consensus 387 ~fWiCp~C~~kF~d~~s~~~Hl~~~H~~~~ 416 (1630)
.|.-||+|++.|-+.+++..|+-.-|-..+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 588999999999999999999988886544
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=71.51 E-value=18 Score=39.36 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
-+..+.+.|++.+|++...+.+..+|.. +.++..-|.++..+.. ...+.+....++..|++++.++..+.|+..
T Consensus 78 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 78 MGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 3466788899999999999999999988 6677777888877642 223445556678899999999999999874
No 131
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=71.23 E-value=15 Score=43.07 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
...-|-...+.|+++.|+.-+++.+..||+|..++-|.++.|..++.. +++.+--..+-+.|...+..-+.-+|||=
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 344456667788888888888888888888877788888888886643 45555456788899999999999999995
No 132
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.32 E-value=21 Score=38.37 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHH
Q 000344 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIES 127 (1630)
Q Consensus 59 ~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~ 127 (1630)
+-.++|...+..|++.-|+.+++-|+...|+. .-+..+....+-+++...+++..+.-||-.|.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n---~~ar~l~A~al~~lg~~~~~~~~Rn~yL~~A~EL 137 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDN---EEARQLKADALEQLGYQSENANWRNYYLTGAKEL 137 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999998 7899999999999999999999999999888765
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=70.20 E-value=13 Score=36.78 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
..+.-+++.|++..|+...+++...+|++.+.+.++...|.++.++. +. ..|+..+.++..+.|++..
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~-------~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG----DK-------EKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC----Ch-------HHHHHHHHHHHHHCcCChh
Confidence 35677889999999999999999999987555667788888877542 22 4788999999999999764
No 134
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=69.81 E-value=2.2 Score=32.48 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=20.1
Q ss_pred EeccccccccCChHHHHHhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQ 410 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~ 410 (1630)
|.|..|++.|.+...+..|+..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5799999999999999999865
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=69.76 E-value=34 Score=42.76 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh--------------ccCChhHHH-----HHHH
Q 000344 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS--------------IIDDLNSKQ-----RHLK 122 (1630)
Q Consensus 62 ~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~--------------~~~~~~~k~-----~~L~ 122 (1630)
..+.-....|++.+|++.++++....|++ +-++.+.+.++.+... ...+++... .|+.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44667788999999999999999999999 7888888888876631 111111111 1211
Q ss_pred ------------HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 123 ------------NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 123 ------------~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
........-..-.|+...+...+|+++... +.+++|.....+++. .|.||
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~----g~~~~A~~~L~~~l~--~~~~~ 296 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC----DDHDTAQQIILDGLK--RQYDE 296 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHh--cCCCH
Confidence 011111222245677899999999999999 578999999999998 35566
No 136
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=68.56 E-value=3.1 Score=31.49 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=16.0
Q ss_pred eccccccccCChHHHHHhh
Q 000344 390 VCCRCNEKFADSESHMHHV 408 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl 408 (1630)
.||.|+++| ..+++..|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 599999999 788888886
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=67.95 E-value=55 Score=39.85 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=85.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000344 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1630)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1630)
.+.+.+.+.-|---.++.+|....||..-...+.-.|++ ..+.+-.|++|.++.+. ++|+.=+++-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGks-----------k~al~Dl~rV 98 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKS-----------KAALQDLSRV 98 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCC-----------ccchhhHHHH
Confidence 344677788888889999999999998888888888999 99999999999999864 5788889999
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000344 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
.+|-|+=..--.-++.+|... +.|+.|++....-|.
T Consensus 99 lelKpDF~~ARiQRg~vllK~----Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQ----GELEQAEADFDQVLQ 134 (504)
T ss_pred HhcCccHHHHHHHhchhhhhc----ccHHHHHHHHHHHHh
Confidence 999999776666677788877 579999999876665
No 138
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.83 E-value=5.8 Score=30.51 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCc
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENS 90 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S 90 (1630)
|.-..+.|++++|++..++++.+||+|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 455667899999999999999999987
No 139
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.75 E-value=14 Score=43.17 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
=.++++.++.||..+|..--+.|.++||+|..+.-+....+..+|+-. + ...|+..+.+-.+|.|++.+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~----~-------y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG----E-------YDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc----c-------HHHHHHHHHHHHHhCCCCCC
Confidence 356789999999999999999999999999766666666666666432 2 24788899999999999987
Q ss_pred HHH
Q 000344 141 FAH 143 (1630)
Q Consensus 141 ia~ 143 (1630)
++-
T Consensus 107 ~dY 109 (254)
T COG4105 107 ADY 109 (254)
T ss_pred hhH
Confidence 653
No 140
>smart00355 ZnF_C2H2 zinc finger.
Probab=65.88 E-value=4.4 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.9
Q ss_pred EeccccccccCChHHHHHhhhhhhc
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H~ 413 (1630)
+.|+.|++.|.+...+..|+. .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 369999999999999999997 654
No 141
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.67 E-value=5.7 Score=32.03 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=29.4
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHH
Q 000344 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVV 163 (1630)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~ 163 (1630)
+|.+|.++.|+..+.-.-+|.+|... |.|++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 58999999999999999999999988 5788874
No 142
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=65.32 E-value=4.4 Score=39.58 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.0
Q ss_pred eEeccccccccCChHHHHHhhhhhh
Q 000344 388 FWVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 388 fWiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
-|.|+.|++.|.+.+.+..||...|
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5999999999999999999998764
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=65.31 E-value=78 Score=41.22 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHH
Q 000344 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHSVEFAHFYANLLY 150 (1630)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L--~P~sl~ia~~~A~~L~ 150 (1630)
+.+|+...++.++..|+. +.+|-..+..+..... ..+ .....+..+.+.+.+|..+ .|..-.+ ..|..+.
T Consensus 358 ~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~-~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~--~~ala~~ 429 (517)
T PRK10153 358 LNKASDLLEEILKSEPDF---TYAQAEKALADIVRHS-QQP--LDEKQLAALSTELDNIVALPELNVLPRI--YEILAVQ 429 (517)
T ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHh-cCC--ccHHHHHHHHHHHHHhhhcccCcCChHH--HHHHHHH
Confidence 678998899999999998 6666655554433322 111 1123445666666676664 4444433 3333344
Q ss_pred HHhccCccHHHHHHHHHHhhccc
Q 000344 151 EAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 151 ~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
.+.. +.|++|.++..||+.+.
T Consensus 430 ~~~~--g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 430 ALVK--GKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHhc--CCHHHHHHHHHHHHHcC
Confidence 4432 58999999999999985
No 144
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.20 E-value=22 Score=42.85 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh-CCChHHHH
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL-SPHSVEFA 142 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L-~P~sl~ia 142 (1630)
|--++.||+|.+|-..=++|..+||.+ -++....-+.|+-.... .....++.+..-- .|+-.-+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~-----------~~~k~ai~kIip~wn~dlp~~s 175 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQ-----------IGKKNAIEKIIPKWNADLPCYS 175 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccch-----------hhhhhHHHHhccccCCCCcHHH
Confidence 355788999999988899999999997 33333333333333211 1111111111111 22221122
Q ss_pred H---HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCc
Q 000344 143 H---FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1630)
Q Consensus 143 ~---~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~ 180 (1630)
. .||--|.++ +.|++|+..++|||.| ||.|--.
T Consensus 176 Yv~GmyaFgL~E~----g~y~dAEk~A~ralqi-N~~D~Wa 211 (491)
T KOG2610|consen 176 YVHGMYAFGLEEC----GIYDDAEKQADRALQI-NRFDCWA 211 (491)
T ss_pred HHHHHHHhhHHHh----ccchhHHHHHHhhccC-CCcchHH
Confidence 2 345556666 5899999999999999 5666543
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.10 E-value=27 Score=41.80 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=72.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000344 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1630)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1630)
++...+++.+|+..=.+.+.--|.+ |+.|.=.+.+|.++. ....|+.-...|..+.|+....--.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4567788889988888888777888 766666665555553 23578888999999999999999999
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..+++.+ +.|++|+...++||.|
T Consensus 156 G~A~~~~----gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 156 GLAYLAL----GKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHcc----CcHHHHHHHHHhhhcc
Confidence 9999988 5799999999999998
No 146
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=62.44 E-value=53 Score=44.28 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=81.2
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000344 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1630)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1630)
++...+-..+.+| +...|++.+||+.+-.++..-+.-. +.+...+|..++++. +-..|.++|-.+
T Consensus 411 ~d~~dL~~d~a~a--l~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-----------e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLADA--LTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-----------EYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHHH--HHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh-----------hHHHHHHHHHHH
Confidence 4445555555555 4578999999999999995544332 455566666666553 447899999999
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccccchhhhHhhhchHHHHHH
Q 000344 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAH 200 (1630)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~ 200 (1630)
..+.|++++.=.-+|.++..+|+ .++|+. + ++++.+|...++. .....|+.|+--
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~----~EkalE----t--L~~~~~~D~~~~e----~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGN----HEKALE----T--LEQIINPDGRNAE----ACAWEPERRILA 530 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCC----HHHHHH----H--HhcccCCCccchh----hccccHHHHHHH
Confidence 99999999999999999999965 465542 2 3445555544332 123356666553
No 147
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=62.19 E-value=74 Score=33.45 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh------hHHH---HHhhchhhHHHhhccCChhHHHHHHHH
Q 000344 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAY------VALI---HRVQGTVCVKVASIIDDLNSKQRHLKN 123 (1630)
Q Consensus 53 ~~~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~------~a~~---h~lqG~i~~~~a~~~~~~~~k~~~L~~ 123 (1630)
|.......++.+....+.|++..|+...++.++-+.|.-. .|+. .+++. .+..+....-...........
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~-~~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE-LYLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHTT-HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCHHH
Confidence 3455667788888999999999999999998888855311 0111 01111 111111110011111112357
Q ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHHHHhcc
Q 000344 124 AIESAKKAAELSPHSVEFAHFYANLLYEAAND 155 (1630)
Q Consensus 124 Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~ 155 (1630)
|+..+.++..+.|-.=..-..+-+++..+|+.
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH
Confidence 89999999999999888888888888888654
No 148
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=59.37 E-value=59 Score=38.29 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
+-.+.-+|+-+.++..+-.++..||.+ .=+|+.+|....... | +..|+..+++|+++.|+.-+.=.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g----~-------~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNG----N-------FGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhc----c-------hHHHHHHHHHHhccCCCChhhhh
Confidence 334455677778888888888888888 666666777776554 1 25799999999999999999999
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC-ccccchhhhHhhhchHHHHHHHHHHHHHHHH
Q 000344 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPA-KESLQDESQQKILTADARIAHVQSELRSLIQ 210 (1630)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa-~~~v~~~~~~~~~~~~~rv~~~~~eL~~li~ 210 (1630)
.++-.|-.+ +..++|......|+.+- |-+|- -+|+.+ ..-...+.+..+..|+.+..
T Consensus 139 ~lgaaldq~----Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm-----s~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 139 LLGAALDQL----GRFDEARRAYRQALELA-PNEPSIANNLGM-----SLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHc----cChhHHHHHHHHHHHhc-cCCchhhhhHHH-----HHHHcCCHHHHHHHHHHHHh
Confidence 999888888 46889999999998873 33332 233322 22233445666665555443
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=58.82 E-value=81 Score=33.39 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000344 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1630)
Q Consensus 55 ~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1630)
-+....-.-|-.++..|+.++|++..+.++...|.....+++..--+.+.+... +.+ .|+..+.....
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----~~d-------~Al~~L~~~~~- 113 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----QYD-------EALATLQQIPD- 113 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----CHH-------HHHHHHHhccC-
Confidence 445556667788889999999999999999887665444556555566666542 222 34444433211
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhh
Q 000344 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERAL 170 (1630)
Q Consensus 135 ~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL 170 (1630)
.+-.-......+.+++.. +.|++|......||
T Consensus 114 ~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 111223455677777776 57999998888775
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=58.81 E-value=28 Score=47.14 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000344 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1630)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1630)
-|..=.=+|.-++.+||+..||..-+.+....|... |-+...-|+-|.++.. + .-|+-++.+|..|.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~----~-------~~a~~a~~ralqLd 229 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGM----S-------EKALLAFERALQLD 229 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccc----h-------hhHHHHHHHHHhcC
Confidence 344445567778888999999998888777777654 4455555766666532 2 47889999999999
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 136 P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
|.||.....+|-+.+..- +...|++++.-..||-.+ +|-+|-.-
T Consensus 230 p~~v~alv~L~~~~l~~~-d~~s~~~~~~ll~~ay~~-n~~nP~~l 273 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFN-DSDSYKKGVQLLQRAYKE-NNENPVAL 273 (1018)
T ss_pred hhhHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhh-cCCCcHHH
Confidence 999999999998777663 345899999999999887 46666443
No 151
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.77 E-value=22 Score=44.84 Aligned_cols=69 Identities=19% Similarity=0.012 Sum_probs=53.5
Q ss_pred ccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH---HHHHHHHHHHHhccCccHHHHH
Q 000344 87 HENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF---AHFYANLLYEAANDGKEYEEVV 163 (1630)
Q Consensus 87 h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i---a~~~A~~L~~~~~~~~~Y~ea~ 163 (1630)
.|+. +.+|+-.|.+++++.+ ...|+.+|++|..+.|+..+. -.-+|-.+..+ +.+++|.
T Consensus 71 dP~~---a~a~~NLG~AL~~lGr-----------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEAl 132 (453)
T PLN03098 71 DVKT---AEDAVNLGLSLFSKGR-----------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKAA 132 (453)
T ss_pred CCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHHH
Confidence 4666 7788888888876642 268999999999999998865 34455555555 5899999
Q ss_pred HHHHHhhccc
Q 000344 164 QECERALAIE 173 (1630)
Q Consensus 164 ~e~~RAL~I~ 173 (1630)
....+||.+.
T Consensus 133 a~LrrALels 142 (453)
T PLN03098 133 DCLRTALRDY 142 (453)
T ss_pred HHHHHHHHhc
Confidence 9999999984
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.61 E-value=70 Score=38.38 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=70.4
Q ss_pred HHHcCCHHHHH---HHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 67 ALRRGNHKKAL---RLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 67 ~~~~G~h~kAL---~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
..+.|+...|+ ..+-.|. |.. +-+.-.-|.++|..+....++ .+-+.+.+|..+.|+.|..-.
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~---g~n---~~~~~g~aeaL~~~a~~~~ta--------~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 166 YMALGRASDALLAYRNALRLA---GDN---PEILLGLAEALYYQAGQQMTA--------KARALLRQALALDPANIRALS 231 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCcccH--------HHHHHHHHHHhcCCccHHHHH
Confidence 45556655554 4444444 666 666666788888877554444 467788999999999999999
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
++|...|+- +.|++|+.--..=|..-.|.||...
T Consensus 232 lLA~~afe~----g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQ----GDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHc----ccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999 5799998776666666656666554
No 153
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=57.49 E-value=6.2 Score=29.74 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.4
Q ss_pred eccccccccCChHHHHHhhhhh
Q 000344 390 VCCRCNEKFADSESHMHHVVQQ 411 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl~~~ 411 (1630)
.|..|++.|.+...|..|+..-
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCTT
T ss_pred CCCccCCccCChhHHHHHhHHh
Confidence 5999999999999999999443
No 154
>PHA02768 hypothetical protein; Provisional
Probab=55.78 E-value=6.7 Score=35.47 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.9
Q ss_pred eccccccccCChHHHHHhhhhhhc
Q 000344 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl~~~H~ 413 (1630)
.|+.||+.|+....|..|+.. |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 799999999999999999976 54
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=55.51 E-value=55 Score=42.54 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa 179 (1630)
..|...+.+|..|.|+ ...-.++++++... |.+++|...+.||+.+ +|.+|-
T Consensus 437 ~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~----G~~~eA~~~~~~A~~L-~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEMS-WLNYVLLGKVYELK----GDNRLAADAYSTAFNL-RPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc-CCCCch
Confidence 5799999999999996 44555567777666 5799999999999997 477763
No 156
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=55.48 E-value=22 Score=30.00 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhc
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQG 101 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG 101 (1630)
|.-+.+.|++++|.+..++.++.+|++ +.+++.-|
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La 42 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALA 42 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhh
Confidence 566788999999999999999999999 55555444
No 157
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=55.18 E-value=7.9 Score=42.86 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.3
Q ss_pred EEEEeC-CeEEEEEEeCCCCcEEEEeCCcceEeC-CHHHHH
Q 000344 1577 VVCYYG-QHYHCFAYSHDQERWIMYDDKTVKVVG-SWSDVL 1615 (1630)
Q Consensus 1577 VVvH~G-GHY~AyvR~~~~~~W~~FDDs~Vt~Vs-swe~Vl 1615 (1630)
-|.-.| ||-+.|+. ..+.||.|||+.+.+-+ +|.+||
T Consensus 132 gi~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tPdp~~VL 170 (193)
T PF05408_consen 132 GIFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTPDPSDVL 170 (193)
T ss_dssp EEEEESTTEEEEEEE--ETTCEEEEETTEEEE----GGGEE
T ss_pred HheecCCcceEEEEE--eeCcEEEecCCeeeeCCCChhheE
Confidence 355556 99999998 57899999999998865 566654
No 158
>PRK14574 hmsH outer membrane protein; Provisional
Probab=55.13 E-value=85 Score=43.17 Aligned_cols=112 Identities=10% Similarity=0.014 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhh----HHHHHhhchhhHHHh---hccC--C--h-hHH---HHHH
Q 000344 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYV----ALIHRVQGTVCVKVA---SIID--D--L-NSK---QRHL 121 (1630)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~----a~~h~lqG~i~~~~a---~~~~--~--~-~~k---~~~L 121 (1630)
+...=+.|+-.++.|+++.|+....++....|.+..+ +.+....|..-.++. +.++ + . ... ..|+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3355678899999999999999999999999997311 122222333332221 1111 1 0 111 0122
Q ss_pred -----HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 122 -----KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 122 -----~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..|++.|.++..+.|+..++-..+|.++..+ +.+++|...+.+++..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAER 165 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhccc
Confidence 3789999999999999977666666665655 5789999888888765
No 159
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.00 E-value=1.6e+02 Score=33.75 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=66.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000344 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1630)
Q Consensus 66 ~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1630)
.+|.+|++.+|..--.+...--|.- -..++.-+|-.-|. +-+|..-...|++..++|.+|-|.-..--..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraa----a~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAA----ALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHH----HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4678888888876555544333321 11333333333322 24556666789999999999999877766777
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
|.++-.+ +.|++|+...+.-|.+ ||..+
T Consensus 175 Aeayek~----ek~eealeDyKki~E~----dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKM----EKYEEALEDYKKILES----DPSRR 202 (271)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHh----CcchH
Confidence 8877777 5799999888887765 66665
No 160
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.79 E-value=7.6 Score=48.74 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 115 NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 115 ~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..|..++.-|++.|++|.+|.|||..+..-+|.+.+.. +.|..|++.|-.|+...
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~----e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV----ESFGGALHDALKAIELD 68 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheee----chhhhHHHHHHhhhhcC
Confidence 34555778999999999999999999999999777777 57999999999999874
No 161
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=69 Score=41.06 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=73.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
-.+|+.|++.+|++.-.+.+.+.|++ +.+..=.+.-|..+. ..-.||.....+.+|.|+-+.-=..
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHH
Confidence 67899999999999999999999999 777776666666654 3356777788889999998876667
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
=|..|+.+ +.|.+|..-+..||..
T Consensus 432 Kg~al~~m----k~ydkAleay~eale~ 455 (539)
T KOG0548|consen 432 KGAALRAM----KEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 78888888 6899999888888875
No 162
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=50 Score=42.51 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~ 182 (1630)
..|..||..|++|+|.|=.=..+.+.-.-.+ +-++.|..=...|++|. |.||-.-+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t----~n~kLAe~Ff~~A~ai~-P~Dplv~~ 418 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRT----NNLKLAEKFFKQALAIA-PSDPLVLH 418 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHh----ccHHHHHHHHHHHHhcC-CCcchhhh
Confidence 5689999999999999988888888776666 45788888888899984 99997654
No 163
>PLN02789 farnesyltranstransferase
Probab=52.52 E-value=76 Score=38.73 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000344 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1630)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1630)
..+.+.+||....+.+..+|.. .-+.+..|.+..++. ..+..+++++.++....|++..+=+.++-+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~---ytaW~~R~~iL~~L~----------~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGN---YTVWHFRRLCLEALD----------ADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHHcc----------hhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 4567999999999999999999 778888888887652 245788999999999999999887777777
Q ss_pred HHHHhccCccHHHHHHHHHHhhcc
Q 000344 149 LYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+..++.. .|+++..-+.++|.+
T Consensus 116 l~~l~~~--~~~~el~~~~kal~~ 137 (320)
T PLN02789 116 AEKLGPD--AANKELEFTRKILSL 137 (320)
T ss_pred HHHcCch--hhHHHHHHHHHHHHh
Confidence 7766421 245555556677765
No 164
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.29 E-value=23 Score=45.51 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
.|.+++|..--+-.....|+. +++-+--|-....-. -+ .-|+.+|.+|..|-|+=|..=.=+|-+-
T Consensus 443 s~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~----~s-------~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGN----RS-------EEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred chHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCc----cc-------HHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 477888887777777788888 666665554433221 11 4799999999999999997766777777
Q ss_pred HHHhccCccHHHHHHHHHHhhcc
Q 000344 150 YEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..+ |.|+||+...-+||.+
T Consensus 509 mNl----G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 509 MNL----GAYKEAVKHLLEALSM 527 (579)
T ss_pred hhh----hhHHHHHHHHHHHHHh
Confidence 777 5899999999999998
No 165
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.73 E-value=63 Score=41.07 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
..+.-.|.++.+-||+|.|-=.|+|..|-.- ..+++|+.....|+-.+
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq----qqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQ----QQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhH----HhHHHHHHHHHHHHhhc
Confidence 4567778899999999999999999999877 47888888888887764
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=51.48 E-value=1.3e+02 Score=38.23 Aligned_cols=114 Identities=8% Similarity=-0.059 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHcCC---HHHHHHHHHHHH---HHccCchhhHHHHHhhchhhHHHhh-ccCChhHHHHHHHHHHHH
Q 000344 55 GAIKLECERALTALRRGN---HKKALRLMKELS---SRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIES 127 (1630)
Q Consensus 55 ~~ir~e~~~al~~~~~G~---h~kAL~~~~eL~---~~h~~S~~~a~~h~lqG~i~~~~a~-~~~~~~~k~~~L~~Al~~ 127 (1630)
+-|-...-+++..+.+|. ...|+.+..+.+ .-.|+- +.+|...+..|+..+- ...+ ...-...|+..
T Consensus 253 a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~ 326 (458)
T PRK11906 253 HYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSE---LELAAQKALEL 326 (458)
T ss_pred chhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 444445777888877776 556777777877 455666 7888888888777642 2222 23455789999
Q ss_pred HHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC
Q 000344 128 AKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1630)
Q Consensus 128 ~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa 179 (1630)
+.+|+++.|+.-..-..+|.++...+ .|+.|.....||+.+ +|..+.
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~----~~~~a~~~f~rA~~L-~Pn~A~ 373 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSG----QAKVSHILFEQAKIH-STDIAS 373 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhc----chhhHHHHHHHHhhc-CCccHH
Confidence 99999999999988888888888874 599999999999997 344433
No 167
>PF13945 NST1: Salt tolerance down-regulator
Probab=51.36 E-value=8.5 Score=43.19 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCCHHHHcceeeEehhhHHh
Q 000344 329 ERRDFVRSYWNSMSLEMKRELLKVKVCDIKA 359 (1630)
Q Consensus 329 ~r~~~v~~yW~~m~~e~kr~fL~V~i~~L~s 359 (1630)
.-...++.||-+|+.++||++++|.=+.+..
T Consensus 102 eEre~LkeFW~SL~eeERr~LVkIEKe~VLk 132 (190)
T PF13945_consen 102 EEREKLKEFWESLSEEERRSLVKIEKEAVLK 132 (190)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhHHHHHH
Confidence 3445789999999999999999998544433
No 168
>PLN02789 farnesyltranstransferase
Probab=51.07 E-value=89 Score=38.14 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=71.2
Q ss_pred HcC-CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHH
Q 000344 69 RRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYAN 147 (1630)
Q Consensus 69 ~~G-~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~ 147 (1630)
..| +..+||+...+++..+|++ .-+.+-.|-+..++.. .....+++++.+|..+.|+....=..++-
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkNy~AW~~R~w 150 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKN---YQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKNYHAWSHRQW 150 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcc---hHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 335 4689999999999999999 6666767777665532 12346899999999999999998888888
Q ss_pred HHHHHhccCccHHHHHHHHHHhhcc
Q 000344 148 LLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 148 ~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
++..+ +.|+++..-|.++|.+
T Consensus 151 ~l~~l----~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 151 VLRTL----GGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHh----hhHHHHHHHHHHHHHH
Confidence 88888 4699999999999997
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=50.27 E-value=94 Score=37.84 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHH
Q 000344 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1630)
Q Consensus 71 G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~ 150 (1630)
.+..||+..|.+|..--|.- -.+...|=+--+++....++. +.+|++.+.+|..-.|+|+.-...++++..
T Consensus 155 reW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSD------VDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred hHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 45779999999998433333 222222222222222233333 256899999999999999999999999888
Q ss_pred HHhccCccHHHHHHHHHHhhc
Q 000344 151 EAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 151 ~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
.- |.|++|+....+.+.
T Consensus 226 ~~----g~y~~AV~~~e~v~e 242 (389)
T COG2956 226 AK----GDYQKAVEALERVLE 242 (389)
T ss_pred hc----cchHHHHHHHHHHHH
Confidence 87 589999877766655
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=77 Score=39.60 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhH------------HHhhccCC-----------
Q 000344 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCV------------KVASIIDD----------- 113 (1630)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~------------~~a~~~~~----------- 113 (1630)
.+.+.-+|--+.--|++++|...+-+.-.-.+.+ +-++.+.|.+.| +.|-.+++
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN---AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccch---hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 4444444444444577778877776666555555 555666665443 22322222
Q ss_pred ------------hhHHHHHHHHHHHHHHHHhhhCCChHHHHHH----HHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000344 114 ------------LNSKQRHLKNAIESAKKAAELSPHSVEFAHF----YANLLYEAANDGKEYEEVVQECERALAIE 173 (1630)
Q Consensus 114 ------------~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~----~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~ 173 (1630)
-.-|.=+++-|-++|++|..+.|+++.+-+. +|.+.+-+ +.-++|+..|.+||.|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL----grl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL----GRLREAISDCNEALKID 317 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc----CCchhhhhhhhhhhhcC
Confidence 2223337788999999999999999966543 24445555 35688999999999984
No 171
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=49.38 E-value=91 Score=41.60 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHccC--chhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHH
Q 000344 73 HKKALRLMKELSSRHEN--SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1630)
Q Consensus 73 h~kAL~~~~eL~~~h~~--S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~ 150 (1630)
..+++.-|.+.+...++ +-..++.+++.|--+-.+|+..-...-+.+++.-||+++.+|+...|+.. -+.||.-+-+
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence 34455445444442211 33458899999988888898877788888899999999999999999998 4555555555
Q ss_pred HHhccCccHHHHHHHHHHhhcccCCCC
Q 000344 151 EAANDGKEYEEVVQECERALAIENPID 177 (1630)
Q Consensus 151 ~~~~~~~~Y~ea~~e~~RAL~I~~P~D 177 (1630)
..- ..-+.|...|+|+|++-.-.+
T Consensus 489 A~~---R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 489 AEQ---RQLTSALDYAREALALNRGDS 512 (799)
T ss_pred HHH---HhHHHHHHHHHHHHHhcCCcc
Confidence 553 357899999999999843333
No 172
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=48.74 E-value=14 Score=32.94 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=21.2
Q ss_pred EeccccccccCChHHHHHhhhhhhccC
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQHMGN 415 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H~~~ 415 (1630)
=.||.|+..+.....|..||+--|...
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCcchhhccchhhHHHHHHHHhccc
Confidence 479999999999999999999988643
No 173
>PRK14574 hmsH outer membrane protein; Provisional
Probab=48.28 E-value=73 Score=43.76 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
....-.|.-+...|++.+|.+++++|...-|+. +-+...+|.|..... .-+.|+..+++|..+.|+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---~~l~~~~A~v~~~Rg-----------~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---QNLRIALASIYLARD-----------LPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhhCCc
Confidence 334445666788999999999999999999998 666666666655432 336899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~ 182 (1630)
.+..=...|.....+ ++|++|.+.. +.|---.|-||...+
T Consensus 483 ~~~~~~~~~~~al~l----~e~~~A~~~~-~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 483 SLILERAQAETAMAL----QEWHQMELLT-DDVISRSPEDIPSQE 522 (822)
T ss_pred cHHHHHHHHHHHHhh----hhHHHHHHHH-HHHHhhCCCchhHHH
Confidence 887777777777777 5799986444 444445677775444
No 174
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.16 E-value=1.2e+02 Score=34.05 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 76 AL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
|+.-.++-..-+|+- .-++.--|..+..+|.-+.+......|...|.+||.+|+.+-|+.
T Consensus 54 AisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 54 AISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444445887 788889999999999877777667778899999999999999985
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.65 E-value=74 Score=37.77 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=53.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
.-++..|++.+|+...+.++..||+|..++-+++..|.++.++ .+. ..|...|.+.....|++-
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~----g~~-------~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK----GDT-------AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc----CCH-------HHHHHHHHHHHHHCcCCH
Confidence 3456789999999999999999999988888888888888755 333 478888999999999986
No 176
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=42.93 E-value=12 Score=41.57 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=14.1
Q ss_pred ccccCCCCCccccchHHHHHHHh
Q 000344 1301 AGLKNEVGEYNCFLNVIIQSLWH 1323 (1630)
Q Consensus 1301 ~GL~NlGN~NTCYMNSVLQ~L~h 1323 (1630)
.|+.|.+ |||++||++|.+-.
T Consensus 34 t~~PN~~--dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 34 TGLPNNH--DNCWLNALLQLFRY 54 (193)
T ss_dssp E----SS--STHHHHHHHHHHHH
T ss_pred ecCCCCC--CChHHHHHHHHHHH
Confidence 4999999 59999999997643
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.12 E-value=2.1e+02 Score=32.30 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000344 75 KALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1630)
Q Consensus 75 kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~ 154 (1630)
.|.+.++.-..+.|.+ +-.++-=|....++|.--..++.| .-+..|+.=|.+|..|.|+--+..-.++.++..+|.
T Consensus 9 ~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~-~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESK-KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6888888888899999 788888898888887532334444 466899999999999999999888888888888776
Q ss_pred cC-------ccHHHHHHHHHHhhcc
Q 000344 155 DG-------KEYEEVVQECERALAI 172 (1630)
Q Consensus 155 ~~-------~~Y~ea~~e~~RAL~I 172 (1630)
.. ..|++|..-..+|..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc
Confidence 42 2788888888888875
No 178
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.95 E-value=52 Score=30.59 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+.++..-|.+++.+. +-+.-..++..|++.++..-.-.|+-+.+-.-+|.++..+ +.|++|+.-..+|+.|
T Consensus 5 a~~~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELG----RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL----GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Confidence 566666677777653 2232234445555542222222222333444445555555 5799999989998876
No 179
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.45 E-value=55 Score=42.54 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000344 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1630)
Q Consensus 73 h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~ 152 (1630)
+++|+.--.....-.|++ |.+|---|-|+|++. -|.-|+++|.+|..+.||=.+--.=+|.+|=+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG-----------~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQG-----------LLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred chHHHHHHHHHHhcCCcc---hhhccceEEEEeccc-----------cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 445554444444445888 888888888888775 245788888888888888887777788888777
Q ss_pred hccCccHHHHHHHHHHhhcc
Q 000344 153 ANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 153 ~~~~~~Y~ea~~e~~RAL~I 172 (1630)
|...+|++=...||..
T Consensus 334 ----G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 334 ----GSVTEAVDCYNKALRL 349 (966)
T ss_pred ----cchHHHHHHHHHHHHh
Confidence 4677887777788776
No 180
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.57 E-value=1.2e+02 Score=38.71 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-ccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 71 G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
|+.-.|..-.++.+.-||.- .-+ +|+..++. .-.++. -.-..|.+|..|.|+.-..-+-+|.++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~---~~l-----yI~~a~~y~d~~~~~-------~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAF---NSL-----YIKRAAAYADENQSE-------KMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred CCchhhhhhHHHHHhcCccc---chH-----HHHHHHHHhhhhccH-------HHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 56666666666666666543 111 22222221 111221 234567899999999999999999999
Q ss_pred HHHhccCccHHHHHHHHHHhhcc
Q 000344 150 YEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
|.+ +.|++|.++...|+++
T Consensus 405 flL----~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 405 FLL----QQYEEAIADFQKAISL 423 (606)
T ss_pred HHH----HHHHHHHHHHHHHhhc
Confidence 999 5899999999999997
No 181
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=37.39 E-value=2.6e+02 Score=38.94 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChh---------HHHHHHHHHHHHHHHHhhh
Q 000344 65 LTAL-RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLN---------SKQRHLKNAIESAKKAAEL 134 (1630)
Q Consensus 65 l~~~-~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~---------~k~~~L~~Al~~~~~A~~L 134 (1630)
+... +.|+.++|++..++....+|++ ..+++..|.+++.... ..+.. .+..+ .+++.+......
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~~--~~ve~~~~~i~~ 111 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLKW--AIVEHICDKILL 111 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccch--hHHHHHHHHHHh
Confidence 4455 6788999999999999999999 8999999998776542 11111 00111 445555555555
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcC-ccccchh
Q 000344 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA-KESLQDE 186 (1630)
Q Consensus 135 ~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa-~~~v~~~ 186 (1630)
.|+.-.-...+|..+=.+ +.+++|.+...|+|.+. |-+|. .++++|-
T Consensus 112 ~~~~k~Al~~LA~~Ydk~----g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~ 159 (906)
T PRK14720 112 YGENKLALRTLAEAYAKL----NENKKLKGVWERLVKAD-RDNPEIVKKLATS 159 (906)
T ss_pred hhhhhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 555444333333333333 67899999999999986 65553 3444433
No 182
>PHA00733 hypothetical protein
Probab=37.18 E-value=21 Score=37.82 Aligned_cols=25 Identities=32% Similarity=0.729 Sum_probs=23.4
Q ss_pred EeccccccccCChHHHHHhhhhhhc
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H~ 413 (1630)
..|+.|++.|.....|..|++.+|.
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 4999999999999999999999995
No 183
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=36.44 E-value=26 Score=38.67 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCccceEeccccccccC
Q 000344 370 SDVLAEALAFAEENKTWRFWVCCRCNEKFA 399 (1630)
Q Consensus 370 ~~~ls~al~fak~n~sW~fWiCp~C~~kF~ 399 (1630)
+..+..+|...+++. .|+||.||=.+-
T Consensus 119 ~~~~~~~Le~~~~~~---~~vC~vCGy~~~ 145 (166)
T COG1592 119 AEMFRGLLERLEEGK---VWVCPVCGYTHE 145 (166)
T ss_pred HHHHHHHHHhhhcCC---EEEcCCCCCccc
Confidence 457899999997777 999999975443
No 184
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=35.37 E-value=27 Score=27.85 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.8
Q ss_pred EeccccccccCChHHHHHhhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~ 411 (1630)
|.|..|.+.|.+..++..|+..+
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred eEccccCCccCCHHHHHHHHChH
Confidence 34999999999999999998654
No 185
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.58 E-value=2.1e+02 Score=34.44 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=68.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
-+++++.++..|++.+.---.+.|.+ --.+.+-|+.+|.. +.| -.|.+||.+-..++|.--.+-..
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~---rAgLSlLgyCYY~~----------Q~f-~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRS---RAGLSLLGYCYYRL----------QEF-ALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHhhChHHHHHHHH
Confidence 56778888999999888888888877 56678889998875 233 46789999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHH
Q 000344 145 YANLLYEAANDGKEYEEVVQEC 166 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~ 166 (1630)
+|.+||.++ -|-+|.+-.
T Consensus 84 ~AQSLY~A~----i~ADALrV~ 101 (459)
T KOG4340|consen 84 QAQSLYKAC----IYADALRVA 101 (459)
T ss_pred HHHHHHHhc----ccHHHHHHH
Confidence 999999995 566665443
No 186
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.79 E-value=3.6e+02 Score=35.68 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHh---ccCccHHHHHHHHHHhhcccCCCCc-CccccchhhhH--hhhchH
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAA---NDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQ--KILTAD 195 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~---~~~~~Y~ea~~e~~RAL~I~~P~DP-a~~~v~~~~~~--~~~~~~ 195 (1630)
.+|+.||.+|....|- +|.+...|| +|.|--.+|..-.+.||.+- |.-| |--|+....+. +.+-.+
T Consensus 439 ~~A~q~y~rAI~~nPt-------~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHhcCcH-------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccchH
Confidence 5899999999999864 333333333 34566788888899999883 3333 22333333332 344455
Q ss_pred HHHHHHHHHHHHHHH
Q 000344 196 ARIAHVQSELRSLIQ 210 (1630)
Q Consensus 196 ~rv~~~~~eL~~li~ 210 (1630)
.|+.++-+-.++.+.
T Consensus 511 ~~~~kl~sivrdql~ 525 (966)
T KOG4626|consen 511 KRMKKLVSIVRDQLE 525 (966)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566665544444333
No 187
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=33.46 E-value=14 Score=35.90 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=0.0
Q ss_pred ccccccccCChHHHHHhhhhhhccCc
Q 000344 391 CCRCNEKFADSESHMHHVVQQHMGNL 416 (1630)
Q Consensus 391 Cp~C~~kF~d~~s~~~Hl~~~H~~~~ 416 (1630)
|..|...|.+...+..||...|.-.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~ 27 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDI 27 (100)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 89999999999999999999997654
No 188
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.98 E-value=11 Score=45.89 Aligned_cols=54 Identities=24% Similarity=0.488 Sum_probs=36.1
Q ss_pred HHHHhccCCHHHHcceeeEehhhHHhhh-h----hcccchhHHHHH-------HHHHHHHhcCccceEeccc
Q 000344 334 VRSYWNSMSLEMKRELLKVKVCDIKAHS-A----SLKDGLASDVLA-------EALAFAEENKTWRFWVCCR 393 (1630)
Q Consensus 334 v~~yW~~m~~e~kr~fL~V~i~~L~s~~-~----~~~~~~~~~~ls-------~al~fak~n~sW~fWiCp~ 393 (1630)
+.+||-+|..|.....++-.+....+-| . +.....+..+|+ +|--|| +||||--
T Consensus 82 ~~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~a------KYWIC~A 147 (353)
T PF15297_consen 82 VGSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLA------KYWICLA 147 (353)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHH------HHHHHHH
Confidence 4689999999877766666666444444 2 222345666777 666666 7999963
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=32.86 E-value=1.8e+02 Score=40.09 Aligned_cols=101 Identities=26% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
+..--.|.+.+++.++.+||+.-|+...-.|+. ..+|..-|-....+.. + +..|-+.|-.|+.|.||
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl~q---~-------le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSLGQ---D-------LEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhccC---C-------HHHHHHHHHHHHhcChh
Confidence 344456778889999999999999999888988 6777777755554421 1 45788899999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.+--.-.++. ||+.-++.-.|.++-.-|.|++-+
T Consensus 70 nlLAWkGL~n-Lye~~~dIl~ld~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 70 NLLAWKGLGN-LYERYNDILDLDRAAKCYQRAVLI 103 (1238)
T ss_pred hhHHHHHHHH-HHHccchhhhhhHhHHHHHHHHHh
Confidence 9977766664 344445555788888888888776
No 190
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=32.81 E-value=1.2e+02 Score=26.93 Aligned_cols=52 Identities=31% Similarity=0.487 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DP 178 (1630)
..|+..+.++..+.|+....-..+|..++.. +.|++|..-+.+++.+. |.++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~-~~~~ 68 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELD-PDNA 68 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC-Ccch
Confidence 5788999999999999887777888888888 57999998899998873 4444
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.47 E-value=5.4e+02 Score=32.46 Aligned_cols=98 Identities=23% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcc----Cc---hhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 65 LTALRRGNHKKALRLMKELSSRHE----NS---AYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~----~S---~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
=.+|++|++..|..+=+..++--. .+ .-.+....+.- |.++|. --.|....+.|+.+-.++.++-|+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~--~lNlA~----c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC--HLNLAA----CYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH--hhHHHH----HHHhhhhHHHHHHHHHHHHhcCCC
Confidence 367999999999877544332221 11 00122222222 222321 134555557999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.+.--..+++++..+ ++|+.|..-..+|+.+
T Consensus 290 N~KALyRrG~A~l~~----~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 290 NVKALYRRGQALLAL----GEYDLARDDFQKALKL 320 (397)
T ss_pred chhHHHHHHHHHHhh----ccHHHHHHHHHHHHHh
Confidence 999999999999999 4899999999999997
No 192
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=32.01 E-value=2.1e+02 Score=34.46 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=58.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000344 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1630)
Q Consensus 63 ~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1630)
.|.-+++-|+.+-|-+.++.+..--..+ .+.+..++.|.+..+. +.. ..|.-.|.+-...+|.++.+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv~l~~g~--e~~-------~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWVNLATGG--EKY-------QDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHTT--TCC-------CHHHHHHHHHHCCS--SHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHhCc--hhH-------HHHHHHHHHHHhccCCCHHHH
Confidence 3344555555555555555544333333 4555555554444332 222 356678888888889999998
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
...|.+...+ +.|++|+.-...||..
T Consensus 205 ng~A~~~l~~----~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 205 NGLAVCHLQL----GHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHC----T-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHHHh
Confidence 8888888888 5799999999999874
No 193
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=3.1e+02 Score=32.69 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-----------ccCChhHHHHH------H------HHH
Q 000344 68 LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-----------IIDDLNSKQRH------L------KNA 124 (1630)
Q Consensus 68 ~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-----------~~~~~~~k~~~------L------~~A 124 (1630)
+-.|+.+-|..-.+.|-.+.|+| .+|-.+-|..+-+.+. --+||..-..| + ..|
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 33456666777777777777888 6666655554443321 11222211111 1 135
Q ss_pred HHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 125 IESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 125 l~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
+..+..=...||+..+-=+-+|.+++.. ++|++|. -|..-+=..+|..|.-+
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~----~~f~kA~-fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSE----GDFEKAA-FCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhH----hHHHHHH-HHHHHHHHcCCCcHHHH
Confidence 5556666778999999999999999999 5899994 78888888889988877
No 194
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=65 Score=37.65 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 118 QRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 118 ~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
-+++..|++||++|.-+.|+-+.+..=.|.-.+.+ +.++.+..-|+|||.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQL 73 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhc
Confidence 34567888899999999999888888888777776 5788898889999987
No 195
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.15 E-value=5.2e+02 Score=33.29 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHH----------HHHHHHhhhCC
Q 000344 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAI----------ESAKKAAELSP 136 (1630)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al----------~~~~~A~~L~P 136 (1630)
++..++..+|+++.+...+..|++ +++-...|.+.++... +..-.+.|++.+ +.+.+|...-=
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~all~~g~----~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNS---PLLQLNLAQALLKGGK----PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCC----hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 456688999999999999999999 7888888888887642 222222322221 34444555555
Q ss_pred ChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 137 ~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
|..+--..+|..++-. +.|++|..-+.||..-
T Consensus 423 ~~~~a~~A~AE~~~~~----G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAEGYALA----GRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence 5555555666666666 4688888778888764
No 196
>PF12907 zf-met2: Zinc-binding
Probab=30.08 E-value=14 Score=31.42 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=21.3
Q ss_pred eccccccccC---ChHHHHHhhhhhhccC
Q 000344 390 VCCRCNEKFA---DSESHMHHVVQQHMGN 415 (1630)
Q Consensus 390 iCp~C~~kF~---d~~s~~~Hl~~~H~~~ 415 (1630)
+|.+|-+.|. +...|..|.+++|...
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 7999997774 4467999999999864
No 197
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=29.94 E-value=48 Score=31.36 Aligned_cols=56 Identities=30% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHhhhcCccccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhh
Q 000344 892 MQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKK 952 (1630)
Q Consensus 892 ~~~l~~~l~~~s~~dyr~~ilpl~k~~l~~~L~~~~~~da~~k~~a~~~a~~a~l~l~~~k 952 (1630)
...=+.+||+-|++-.-..--.+=-++|+..-++|-+.||.+|.-++ ||+|-+.|+
T Consensus 7 ~vSPLIkfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~d-----a~~a~ekKr 62 (81)
T KOG4326|consen 7 TVSPLIKFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVAD-----AEEAAEKKR 62 (81)
T ss_pred eecHHHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHh
Confidence 34445677887776433333333446777778899999988887655 445545554
No 198
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=27.65 E-value=26 Score=37.77 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=10.5
Q ss_pred eEecccccccc
Q 000344 388 FWVCCRCNEKF 398 (1630)
Q Consensus 388 fWiCp~C~~kF 398 (1630)
||.||.|++.|
T Consensus 124 f~~C~~C~kiy 134 (147)
T PF01927_consen 124 FWRCPGCGKIY 134 (147)
T ss_pred EEECCCCCCEe
Confidence 99999999988
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=27.02 E-value=3e+02 Score=30.40 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccccchhhhHhhhchHHHHHH
Q 000344 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAH 200 (1630)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~ 200 (1630)
+..|...|.-...+.|+..+....+|..+=.+ +.|++|..-..+|+.+. |.||..+--. +.+. -.-..+..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~----g~~~~AI~aY~~A~~L~-~ddp~~~~~a-g~c~---L~lG~~~~ 121 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ----KHWGEAIYAYGRAAQIK-IDAPQAPWAA-AECY---LACDNVCY 121 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcC-CCCchHHHHH-HHHH---HHcCCHHH
Confidence 35788889999999999999999999998888 58999999999999986 8888776321 2211 12234566
Q ss_pred HHHHHHHHHHhh
Q 000344 201 VQSELRSLIQKS 212 (1630)
Q Consensus 201 ~~~eL~~li~~a 212 (1630)
.++-++.+|..+
T Consensus 122 A~~aF~~Ai~~~ 133 (157)
T PRK15363 122 AIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHh
Confidence 777777777765
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.87 E-value=3e+02 Score=28.83 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000344 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1630)
Q Consensus 57 ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1630)
.+.-+.-+-.+-.-|++++|+...++....||+......+....+...+.+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455556677889999999999999999998421144444444444443
No 201
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.86 E-value=59 Score=39.48 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=49.0
Q ss_pred HHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 97 HRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 97 h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
.--+|.-|+++. -..-|++||+++.-+.|...++-+-+|.+++.+ +.|--|+..|..|++.
T Consensus 100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHh
Confidence 345666676664 236899999999999998788888889999988 6677888889999885
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=26.80 E-value=97 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
|.++...|.+++.+.. ...|+.+|.+|..+.|+.
T Consensus 1 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD-----------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHCcCC
Confidence 3456667777776642 358999999999999973
No 203
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=2.4e+02 Score=35.53 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000344 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1630)
Q Consensus 67 ~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1630)
++.+-++..||-.+++-+...|++ --++.+-|.+..++.+- ..|+=+|+.|.+|+|--+++-..+-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~-----------~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERH-----------TQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccch-----------HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344455556666666666555555 45555556555544321 4678889999999999999888888
Q ss_pred HHHHHHhccCccHHHHHHHHHHhhc
Q 000344 147 NLLYEAANDGKEYEEVVQECERALA 171 (1630)
Q Consensus 147 ~~L~~~~~~~~~Y~ea~~e~~RAL~ 171 (1630)
+.+..- +..+||..-+..++.
T Consensus 376 hsYLA~----~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 376 HSYLAQ----KRFKEANALANWTIR 396 (564)
T ss_pred HHHHhh----chHHHHHHHHHHHHH
Confidence 777766 467888766555443
No 204
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=26.47 E-value=2.6e+02 Score=36.56 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000344 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1630)
Q Consensus 61 ~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1630)
.=-|.-..+.|++.+||+-+++-+..-|.. .-++.+-|.|+-++.. +..|.+++..|..|.+..=-
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~-----------~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD-----------LKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhCChhhHH
Confidence 334566778999999999999999666888 8899999999988752 36888999999999988888
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHH
Q 000344 141 FAHFYANLLYEAANDGKEYEEVVQEC 166 (1630)
Q Consensus 141 ia~~~A~~L~~~~~~~~~Y~ea~~e~ 166 (1630)
|..-+|.-++.. +.+++|+.-+
T Consensus 264 iNsK~aKy~LRa----~~~e~A~~~~ 285 (517)
T PF12569_consen 264 INSKCAKYLLRA----GRIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHH
Confidence 889999999888 5788887665
No 205
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.36 E-value=34 Score=30.50 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=18.5
Q ss_pred EeccccccccCChHHHHHhhhhhh
Q 000344 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 389 WiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
-+||.|..++.+ .|..||...|
T Consensus 32 v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 32 VVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred ccCCCchhhhhh--HHHHHHHHhc
Confidence 489999988774 8999998777
No 206
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=25.48 E-value=3e+02 Score=34.71 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000344 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1630)
Q Consensus 70 ~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1630)
.|++..|+...++|..++|.- +.+ -+.++.. .+.. ..|+..+.++....|++.++-..-|+.|
T Consensus 182 t~~~~~ai~lle~L~~~~pev---~~~---LA~v~l~-----~~~E------~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---AVL---LARVYLL-----MNEE------VEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---HHH---HHHHHHh-----cCcH------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356899999999999999864 211 1222221 1222 3667888888899999988888888888
Q ss_pred HHHhccCccHHHHHHHHHHhhcc
Q 000344 150 YEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+.- +.|+.|..-+++|..+
T Consensus 245 l~k----~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 245 LSK----KKYELALEIAKKAVEL 263 (395)
T ss_pred Hhc----CCHHHHHHHHHHHHHh
Confidence 777 5799999999999987
No 207
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=25.14 E-value=21 Score=31.57 Aligned_cols=18 Identities=39% Similarity=0.778 Sum_probs=6.9
Q ss_pred HHHhcCccceEecccccc
Q 000344 379 FAEENKTWRFWVCCRCNE 396 (1630)
Q Consensus 379 fak~n~sW~fWiCp~C~~ 396 (1630)
|..-+.....|.||.|++
T Consensus 32 fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 32 FLESNQRTPKWKCPICNK 49 (50)
T ss_dssp HHHHHHHS---B-TTT--
T ss_pred HHHHhhccCCeECcCCcC
Confidence 333333344499999975
No 208
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.88 E-value=2.6e+02 Score=36.97 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=69.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000344 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1630)
.-+++.|..++||..+++.+--.|.+ ++.-+-.|.+.+.+.+ | .-|+..+-+-+.++|+-....++
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~il~~~~~----------~-~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRASILFSLGR----------Y-VEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHHHHHhhcc----------h-HHHHHHHHHHHHhCcchHHHHHH
Confidence 34567777788887777777666777 6666666777776642 1 46788888888888888888888
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcccc
Q 000344 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1630)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v 183 (1630)
+++..-.++ .+..|..+.--|+- .||-..++
T Consensus 597 lgki~k~~~----~~~~Al~~f~~A~~----ldpkg~~i 627 (638)
T KOG1126|consen 597 LGKIYKRLG----NTDLALLHFSWALD----LDPKGAQI 627 (638)
T ss_pred HHHHHHHHc----cchHHHHhhHHHhc----CCCccchh
Confidence 888888884 56778777755554 46665543
No 209
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.08 E-value=7.8e+02 Score=30.47 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
-=.||=|.....+.++++|+...++-....|++ .++-..-|.|+.... +...||+.+.+..+-.|+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g-----------~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKC---VRASIILGRVELAKG-----------DYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhcc-----------chHHHHHHHHHHHHhChH
Confidence 346888899999999999999999999999999 888899999988664 235789999999888887
Q ss_pred hH-HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCccccchh
Q 000344 138 SV-EFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDE 186 (1630)
Q Consensus 138 sl-~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~~v~~~ 186 (1630)
=+ ++.-.+...+-.++ .-++...-..|+... -.+++...+.++
T Consensus 247 yl~evl~~L~~~Y~~lg----~~~~~~~fL~~~~~~--~~g~~~~l~l~~ 290 (389)
T COG2956 247 YLSEVLEMLYECYAQLG----KPAEGLNFLRRAMET--NTGADAELMLAD 290 (389)
T ss_pred HHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHc--cCCccHHHHHHH
Confidence 66 45444554555553 344454445555544 233444444333
No 210
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=3.3e+02 Score=35.28 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000344 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1630)
Q Consensus 55 ~~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1630)
..-+.-|.+|+-+.+-|+...||+=++.-+.-+|+= .-+..-+|.+++.+ ..| ..|+++|.+|..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~RKg~al~~m----------k~y-dkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYLRKGAALRAM----------KEY-DKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHhc
Confidence 345678899999999999999999999999999876 55566667766654 223 5789999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 000344 135 SPHSVEFAHFYANLLY 150 (1630)
Q Consensus 135 ~P~sl~ia~~~A~~L~ 150 (1630)
.|++-++.-.+-+.+-
T Consensus 456 dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVE 471 (539)
T ss_pred CchhHHHHHHHHHHHH
Confidence 9999887766554443
No 211
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=3.8e+02 Score=35.02 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000344 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1630)
Q Consensus 58 r~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1630)
.++=.+|+..|+ +||.++++.-.. +.+=......-||++.++- -...|+.+|++|.+|.|.
T Consensus 427 ~~~y~~A~~~f~-----~~l~~ik~~~~e---~~~w~p~~~NLGH~~Rkl~-----------~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 427 YEEYPEALKYFQ-----KALEVIKSVLNE---KIFWEPTLNNLGHAYRKLN-----------KYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HhhhHHHHHHHH-----HHHHHhhhcccc---ccchhHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHcCCC
Confidence 556666777776 677666665522 2211233445588777653 347899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
+..+=+..|-....++ -.++|..-...||+|
T Consensus 488 ~~~~~asig~iy~llg----nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLG----NLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHHHHHHHHhc----ChHHHHHHHHHHHhc
Confidence 9999888888888885 468899999999998
No 212
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=22.98 E-value=85 Score=34.51 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=25.0
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCcEEEEeCCcc
Q 000344 1574 LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTV 1605 (1630)
Q Consensus 1574 L~AVVvH~GGHY~AyvR~~~~~~W~~FDDs~V 1605 (1630)
..|+|++.+.|.+|..| -+|.||.+|-..-
T Consensus 99 ~~gfI~N~~~HWf~iRk--i~~~wyNLDS~l~ 128 (157)
T PF02099_consen 99 EFGFICNLSRHWFAIRK--IGGQWYNLDSKLK 128 (157)
T ss_dssp SSEEEEECTTEEEEEEE--ETTEEEEECTTTS
T ss_pred ceEEEeccCcceEEEEe--eCCeeEeccCCCC
Confidence 35779998899999999 6899999996543
No 213
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=22.93 E-value=5.9e+02 Score=33.29 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=76.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc----cC-chhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 65 LTALRRGNHKKALRLMKELSSRH----EN-SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 65 l~~~~~G~h~kAL~~~~eL~~~h----~~-S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
.-+..-|++.+|..+-++..+.. |. +..|+.+|+--|..++... .-+--..|+.+|++.+.+ .+..+.-
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G----Kf~EA~~~~e~Al~I~~~--~~~~~~~ 322 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG----KFAEAEEYCERALEIYEK--LLGASHP 322 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC----ChHHHHHHHHHHHHHHHH--hhccChH
Confidence 33445567777766666633222 11 2223555554455554432 222225688999999999 4555555
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccC-CCCcCccccc--hhhhHhhhchHHHHHHHHHHHHHHHHhhc
Q 000344 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIEN-PIDPAKESLQ--DESQQKILTADARIAHVQSELRSLIQKSN 213 (1630)
Q Consensus 140 ~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~-P~DPa~~~v~--~~~~~~~~~~~~rv~~~~~eL~~li~~a~ 213 (1630)
+.+..+-.+-..... .+.|++|..-.++||.|-. -..++.-+++ +..-.+..-...|...+.+=++.+|++.+
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 555554433332222 2579999999999999954 1222221232 12212334445566666666666666543
No 214
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.62 E-value=5.5e+02 Score=30.75 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCch-h-----------------------hHHHHHhhchhhHHHhhcc
Q 000344 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSA-Y-----------------------VALIHRVQGTVCVKVASII 111 (1630)
Q Consensus 56 ~ir~e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~-~-----------------------~a~~h~lqG~i~~~~a~~~ 111 (1630)
..+-..+.|.-++.+|++.+|+..+++++....... . ...-....+.+++.+|.=.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999997331110 0 0011122234444433210
Q ss_pred CCh--hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000344 112 DDL--NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1630)
Q Consensus 112 ~~~--~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~ 154 (1630)
+.. .....-...++..|..|+.+.|+.-..-+.+|.....+-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 000 0112233568999999999999999877777777766643
No 215
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.58 E-value=4.5e+02 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000344 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1630)
Q Consensus 123 ~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I 172 (1630)
..+..+.+++...|+.++....+|..++.. +.|++|....-..+..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~----g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAA----GDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999888 5899999988777765
No 216
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.57 E-value=98 Score=41.04 Aligned_cols=80 Identities=28% Similarity=0.273 Sum_probs=61.6
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH--hhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000344 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV--ASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1630)
Q Consensus 69 ~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~--a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1630)
+.|+++|||..+-.|....|. +++-+.++.|.|+.+. ++...|+. ++.-|..-|++|-+..|+-- .-.-+|
T Consensus 255 r~GDRakAL~~~l~lve~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~----s~~~a~~WyrkaFeveP~~~-sGIN~a 327 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGP--VAPDMYCLCGRIYKDMFIASNYTDAE----SLNHAIEWYRKAFEVEPLEY-SGINLA 327 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCC--CCCceeeeechhhhhhhhccCCcchh----hHHHHHHHHHHHhccCchhh-ccccHH
Confidence 458899999999999987753 3488999999999985 55555554 88899999999999999642 223456
Q ss_pred HHHHHHhcc
Q 000344 147 NLLYEAAND 155 (1630)
Q Consensus 147 ~~L~~~~~~ 155 (1630)
.+|...|.+
T Consensus 328 tLL~aaG~~ 336 (1226)
T KOG4279|consen 328 TLLRAAGEH 336 (1226)
T ss_pred HHHHHhhhh
Confidence 777777654
No 217
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=22.57 E-value=1.1e+02 Score=23.39 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.8
Q ss_pred HHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000344 95 LIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1630)
Q Consensus 95 ~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1630)
-+++..|.+++.... ...|+.+|.+|..+.|+.
T Consensus 2 ~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-----------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCcCC
Confidence 456677777776642 368999999999999973
No 218
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=22.44 E-value=1.2e+02 Score=28.84 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHh
Q 000344 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1630)
Q Consensus 64 al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a 108 (1630)
|.-+++.|++.+|+...+. ....|.. +..+.+-|..++++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLG 72 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhC
Confidence 6788999999999999988 4444555 677777799999875
No 219
>PHA00732 hypothetical protein
Probab=22.44 E-value=51 Score=32.09 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred eccccccccCChHHHHHhhhhhhc
Q 000344 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1630)
Q Consensus 390 iCp~C~~kF~d~~s~~~Hl~~~H~ 413 (1630)
.|+.|++.|.+..++..|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999976564
No 220
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=21.76 E-value=3.4e+02 Score=32.71 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000344 54 YGAIKLECERALTALRRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAA 132 (1630)
Q Consensus 54 ~~~ir~e~~~al~~~~~G-~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~ 132 (1630)
++.|-.=|+.-+.+..-| +..+|.-.-+||+.++|.+ +.+++.++..+..+. ++..|...+.+|.
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~-----------~~~eAe~~L~~al 228 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLG-----------HYEEAEELLEEAL 228 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT------------HHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHH
Confidence 355555555555555544 3889999999999999888 888887877777664 4467788888999
Q ss_pred hhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcCcc
Q 000344 133 ELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1630)
Q Consensus 133 ~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RAL~I~~P~DPa~~ 181 (1630)
...|+..+.-+=.+.+-..+|+ -.++..+..--|.-.+|..|...
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk----~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGK----PTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-----TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCC----ChhHHHHHHHHHHHhCCCChHHH
Confidence 9999987754444433344432 22333344444444555544433
No 221
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=21.29 E-value=2.3e+02 Score=34.07 Aligned_cols=65 Identities=26% Similarity=0.205 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccC---------ChhHH--HHHHHHHHHHHHHHhhhCCChHHHHH
Q 000344 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIID---------DLNSK--QRHLKNAIESAKKAAELSPHSVEFAH 143 (1630)
Q Consensus 76 AL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~---------~~~~k--~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1630)
-++.++.-++..|.| ..+|.+.|..+++.|-.+. +..-. ..++..|+..+.+|..|.|.++--+.
T Consensus 62 ~~~~LkaWv~a~P~S---y~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~ 137 (277)
T PF13226_consen 62 RLAVLKAWVAACPKS---YHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAI 137 (277)
T ss_pred HHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 466689999999999 9999999999999873111 11111 23667899999999999999985443
No 222
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.03 E-value=4.7e+02 Score=30.20 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=53.1
Q ss_pred hhchhhHHHh---hccCChhHHHHHHHHHHHHHHHHhhhCCCh------HHHHHHHHHHHHHHhccCccHHHHHHHHHHh
Q 000344 99 VQGTVCVKVA---SIIDDLNSKQRHLKNAIESAKKAAELSPHS------VEFAHFYANLLYEAANDGKEYEEVVQECERA 169 (1630)
Q Consensus 99 lqG~i~~~~a---~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s------l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RA 169 (1630)
..|.++.++| +...+.+.-..||..|++.|.+|..-...- ..+..+.|.+-..+ |.|++|.+-..|.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl----g~~~eA~~~fs~v 191 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL----GNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh----CCHHHHHHHHHHH
Confidence 6778888876 677777778899999999999999776552 34445555555555 6899998888887
Q ss_pred hcc
Q 000344 170 LAI 172 (1630)
Q Consensus 170 L~I 172 (1630)
++-
T Consensus 192 i~~ 194 (214)
T PF09986_consen 192 IGS 194 (214)
T ss_pred HcC
Confidence 775
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=2.5e+02 Score=36.84 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHH
Q 000344 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQEC 166 (1630)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~ 166 (1630)
..|+.++. .+.+....+-++.|..||.+ +.|++|..-.
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl----~~ydealdiY 133 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRL----ERYDEALDIY 133 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 45677776 67777888999999999999 5799998655
No 224
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.34 E-value=3.1e+02 Score=35.90 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000344 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1630)
Q Consensus 60 e~~~al~~~~~G~h~kAL~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1630)
--++.+.++++|+--+|.-..+--+...|.- +-+-..-|.++.+.-. . .+|+.++.++..|.|+.+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~h---aeAW~~LG~~qaENE~----E-------~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQH---AEAWQKLGITQAENEN----E-------QNAISALRRCLELDPTNL 353 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHH---HHHHHHhhhHhhhccc----h-------HHHHHHHHHHHhcCCccH
Confidence 4467789999999889887777778888999 7788889999986632 2 589999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000344 140 EFAHFYANLLYEAA 153 (1630)
Q Consensus 140 ~ia~~~A~~L~~~~ 153 (1630)
+--..+|-....-+
T Consensus 354 eaLmaLAVSytNeg 367 (579)
T KOG1125|consen 354 EALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHHHhhhh
Confidence 98888887777664
Done!