Query 000344
Match_columns 1630
No_of_seqs 243 out of 1398
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 17:15:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000344.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_122-125//hhsearch_pdb/000344hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 390.7 21.7 308 1299-1629 7-354 (367)
2 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 386.3 19.4 303 1297-1629 59-391 (396)
3 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 378.0 21.5 305 1298-1629 7-338 (348)
4 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 373.9 24.2 304 1298-1629 12-389 (404)
5 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 370.9 21.8 304 1299-1629 2-346 (355)
6 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 368.9 23.5 284 1298-1629 22-409 (415)
7 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 366.5 25.3 281 1298-1629 4-310 (353)
8 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 364.5 23.5 282 1297-1629 172-479 (522)
9 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 364.3 18.5 299 1299-1629 140-469 (476)
10 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 357.9 23.7 232 1298-1564 342-623 (854)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=390.70 Aligned_cols=308 Identities=19% Similarity=0.280 Sum_probs=231.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 456654789886544229999997129999998144999876569-----746999999999997503689998642718
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVG-----EPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1630)
Q Consensus 1299 ~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~~-----~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~ 1373 (1630)
+.+||.|+|| ||||||+||||+|+++|+++|+...+..+.... ..++.++|+.||..||.. ....+.|.
T Consensus 7 g~~GL~NlGN--TCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~----~~~~i~P~ 80 (367)
T 2y6e_A 7 GLCGLGNLGN--TCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG----RDAHVAPR 80 (367)
T ss_dssp TCCEECCCSS--CHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS----SCSEECCH
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC----CCCCCCHH
T ss_conf 9808764885--64989999999777999999973722555044698886429999999999999748----99873879
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CCCCCCC--CCCCCCCCC
Q ss_conf 8999996128997000000125499999999999986419999999873111236-------8988667--876433234
Q 000344 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNC-------MGSWDCT--NSACIVHSL 1444 (1630)
Q Consensus 1374 ~Lr~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~-------~~sw~~~--~~~SiI~~L 1444 (1630)
.|+.+++...+. |.+++||||||||.+|||.||+++......+..+...... ...|... ...++|+++
T Consensus 81 ~~~~~l~~~~~~---f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~ 157 (367)
T 2y6e_A 81 MFKTQVGRFAPQ---FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDT 157 (367)
T ss_dssp HHHHHHHHHCGG---GCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999974041---08987878799999999999999875125776445565679606778999999887069823013
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEE---CCHHHHHHHH--------HHCCCCCHHHHHHHHHCCC------CCCCC
Q ss_conf 30278999971478853433434421351---2501223455--------3124688889999984034------43468
Q 000344 1445 FGMDIFERMNCYSCGLESRHLKYTSFFHN---INASALRTMK--------VMCAESSLDELLNLVEMNH------QLACD 1507 (1630)
Q Consensus 1445 F~G~l~s~i~C~~Cg~~S~~~~~~sf~~l---I~as~l~~~~--------~~~~~~sledlLk~~~~~e------~~~Cd 1507 (1630)
|+|++.++++|..|+.+|.+ +++|+.+ |+........ ...+..+++++|+.++..+ .|.|+
T Consensus 158 F~G~l~s~~~C~~C~~~s~~--~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~ 235 (367)
T 2y6e_A 158 FHGLFKSTLVCPECAKVSVT--FDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCP 235 (367)
T ss_dssp HCEEEEEEEECTTTCCEEEE--EEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred CCCEEEEEEEECCCCCEEEE--ECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 37688435890899998533--7567057731798767750133205644567888899999986161647899872487
Q ss_pred CCCCCCCCC--CEEEEEEECCCCEEEEEEEECCCCC-CCCCCCCCCCCCCC-EECCCCCCCCC-CCCCCEEEEEEEEEEC
Q ss_conf 999876753--2078886158972899998507886-32011222222431-01043341257-9998559999999949
Q 000344 1508 PGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGL-DPKRRHSLVSVVCYYG 1582 (1630)
Q Consensus 1508 ~~c~~C~k~--~~kk~~IsrlP~VLiIhL~r~~~~~-s~~kI~~~i~~fp~-~LDLs~f~~g~-~~~~~Y~L~AVV~H~G 1582 (1630)
+|++. ..++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+... .....|+|+|||+|.|
T Consensus 236 ----~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~-fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G 310 (367)
T 2y6e_A 236 ----NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE-FPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG 310 (367)
T ss_dssp ----TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEE-CCSSCEECGGGBSCSSSCCCEEEEEEEEEEEC
T ss_pred ----CCCCCCEEEEEEEEECCCCEEEEEEECEEECCCCCEECCCEEE-ECCCCCCHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf ----8788750789988824885789998476505766335376389-31776775664258788971488998856289
Q ss_pred ----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf ----70999998479996899829942270897889998621997544458
Q 000344 1583 ----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1583 ----GHYvayvR~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~qP~vl~ 1629 (1630)
|||+||+|...+++||+|||+.|+.| ++++|+. -+|+||+
T Consensus 311 ~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v-~~~~v~~------~~aYiLf 354 (367)
T 2y6e_A 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLA-SEDQIVT------KAAYVLF 354 (367)
T ss_dssp SSSSCEEEEEEECTTTCCEEEEETTEEEEC-CGGGTSS------TTEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCEEC-CHHHCCC------CCCEEEE
T ss_conf 998873667887699990899779873399-8888688------9737999
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=386.26 Aligned_cols=303 Identities=20% Similarity=0.338 Sum_probs=229.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3345665478988654422999999712999999814499987656-----97469999999999975036899986427
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHV-----GEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1630)
Q Consensus 1297 ~~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~-----~~~cv~~aL~~Lf~~L~~ss~~~~~~~vs 1371 (1630)
..+.+||.|+|| ||||||+||||+|+++|+++|+...+..+... ...++.++|..++..||.. ....++
T Consensus 59 ~~g~~GL~NlGN--TCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~----~~~~i~ 132 (396)
T 2gfo_A 59 GPALTGLRNLGN--TCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG----QYRYIS 132 (396)
T ss_dssp STTCCEECCSSS--CHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHS----CEEEEC
T ss_pred CCCCCCCCCCCC--CHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCEEC
T ss_conf 778666561687--41672999985378899999970742133123587774109999999999999709----984377
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------CCCCCCC--CCCCCCCC
Q ss_conf 18899999612899700000012549999999999998641999999987311123-------6898866--78764332
Q 000344 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESN-------CMGSWDC--TNSACIVH 1442 (1630)
Q Consensus 1372 P~~Lr~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~-------~~~sw~~--~~~~SiI~ 1442 (1630)
|..|+.+++.+.+. |.+++||||||||.+|||.||+++.........+..... ....|.. ....++|+
T Consensus 133 P~~f~~~l~~~~~~---f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~ 209 (396)
T 2gfo_A 133 PKDFKITIGKINDQ---FAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV 209 (396)
T ss_dssp CHHHHHHHHHHCGG---GSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHCHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89999999974543---348788775999999999999998653145544555555664256778999876650688340
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCC
Q ss_conf 3430278999971478853433434421351-25012234553124688889999984034------4346899987675
Q 000344 1443 SLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEK 1515 (1630)
Q Consensus 1443 ~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e------~~~Cd~~c~~C~k 1515 (1630)
++|+|++.++++|..|+.+|.+ +++|+.+ ++... .+..+++++|+.++..+ +|.|+ +|+.
T Consensus 210 ~lF~G~l~s~i~C~~C~~~s~~--~e~f~~LsL~ip~-------~~~~sL~~~L~~f~~~E~l~~~n~~~C~----~C~~ 276 (396)
T 2gfo_A 210 ALFQGQFKSTVQCLTCHKKSRT--FEAFMYLSLPLAS-------TSKCTLQDCLRLFSKEEKLTDNNRFYCS----HCRA 276 (396)
T ss_dssp HHHCEEEEEEEEETTTCCEEEE--EEEESSEEECCSC-------SSEEEHHHHHHHHTSCEEECSTTCEEET----TTTE
T ss_pred HHHCCEEEEEEEECCCCCEECC--CCCCEEEEECCCC-------CCCCCHHHHHHHHCCCCCCCCCCCCCCC----CCCC
T ss_conf 2008688777885799962032--4463123332663-------4657999999983772251687641157----7555
Q ss_pred C--CEEEEEEECCCCEEEEEEEECCCCC-CCCCCCCCCCCCCC-EECCCCCCCCC-CCCCCEEEEEEEEEEC----CEEE
Q ss_conf 3--2078886158972899998507886-32011222222431-01043341257-9998559999999949----7099
Q 000344 1516 L--NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGL-DPKRRHSLVSVVCYYG----QHYH 1586 (1630)
Q Consensus 1516 ~--~~kk~~IsrlP~VLiIhL~r~~~~~-s~~kI~~~i~~fp~-~LDLs~f~~g~-~~~~~Y~L~AVV~H~G----GHYv 1586 (1630)
. ..++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+.+. .....|+|+|||+|.| |||+
T Consensus 277 ~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~-fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~ 355 (396)
T 2gfo_A 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVD-FPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYT 355 (396)
T ss_dssp EECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEE-CCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCEECCCCCCEECCCEEE-CCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEE
T ss_conf 453589999803785799985011025761001674485-4534245664334777787358899999856999998307
Q ss_pred EEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 9998479996899829942270897889998621997544458
Q 000344 1587 CFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1587 ayvR~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~qP~vl~ 1629 (1630)
||+|+...++||+|||+.|+.| ++++|+. -+|+||+
T Consensus 356 a~v~~~~~~~W~~fnD~~V~~v-~~~~v~~------~~aYiLf 391 (396)
T 2gfo_A 356 AYCKNAARQRWFKFDDHEVSDI-SVSSVKS------SAAYILF 391 (396)
T ss_dssp EEEEETTTTEEEEEETTEEEEC-CHHHHSC------TTEEEEE
T ss_pred EEECCCCCCCEEEEECCCEEEC-CHHHCCC------CCCEEEE
T ss_conf 9985799998799748873898-8888689------9856999
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=378.02 Aligned_cols=305 Identities=18% Similarity=0.279 Sum_probs=233.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 3456654789886544229999997129999998144999876---5697469999999999975036899986427188
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHI---HVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS 1374 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~---~~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~ 1374 (1630)
.+.+||.|+|| ||||||+||||+++|+||++++...+.... .....++.++|..+|..||..+ ....++|..
T Consensus 7 ~g~~GL~N~GN--tCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~---~~~~~~p~~ 81 (348)
T 3nhe_A 7 QGLAGLRNLGN--TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS---PNDVVSPSE 81 (348)
T ss_dssp CSCCEECCCSS--CHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC---TTCEECCHH
T ss_pred CCCCCCCCCCC--CHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCHHH
T ss_conf 99977875883--4798899999966799999985244667614688731189999999999997178---987248999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CCCCC--CCCCCCCCCCCC
Q ss_conf 999996128997000000125499999999999986419999999873111236-------89886--678764332343
Q 000344 1375 LRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNC-------MGSWD--CTNSACIVHSLF 1445 (1630)
Q Consensus 1375 Lr~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~-------~~sw~--~~~~~SiI~~LF 1445 (1630)
|+.++....+. |.+++||||||||.+|||.||+++......+......... ...|. .....++|.++|
T Consensus 82 ~~~~l~~~~~~---f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F 158 (348)
T 3nhe_A 82 FKTQIQRYAPR---FVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLF 158 (348)
T ss_dssp HHHHHHHHSGG---GSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999986064---079874479999999999999987530467887752224688227789999998750698455551
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCCC--
Q ss_conf 0278999971478853433434421351-25012234553124688889999984034------43468999876753--
Q 000344 1446 GMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL-- 1516 (1630)
Q Consensus 1446 ~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e------~~~Cd~~c~~C~k~-- 1516 (1630)
+|.+.+++.|..|+.++.+ +++|+.+ ++... ...+..+++++|+.++..+ ++.|+ +|+..
T Consensus 159 ~g~~~~~~~C~~C~~~s~~--~e~f~~LsL~i~~-----~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~----~C~~~~~ 227 (348)
T 3nhe_A 159 VGQLKSSLTCTDCGYCSTV--FDPFWDLSLPIAK-----RGYPEVTLMDCMRLFTKEDVLDGDEKPTCC----RCRGRKR 227 (348)
T ss_dssp CEEEEEEEEETTTCCEEEE--EEEESSEEECCCS-----SCSSCEEHHHHHHHHHSCEEECGGGCCEET----TTTEECC
T ss_pred CEEEEEEEECCCCCCEEEE--ECCCEEEEEECCC-----CCCCCCCHHHHHHHHCCCEEECCCCCEECC----CCCCCCC
T ss_conf 2499989994899988644--4465477642798-----556777899999874680571688856788----8888564
Q ss_pred CEEEEEEECCCCEEEEEEEECCCCC-CCCCCCCCCCCCCC-EECCCCCCCCCCCCCCEEEEEEEEEEC----CEEEEEEE
Q ss_conf 2078886158972899998507886-32011222222431-010433412579998559999999949----70999998
Q 000344 1517 NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAY 1590 (1630)
Q Consensus 1517 ~~kk~~IsrlP~VLiIhL~r~~~~~-s~~kI~~~i~~fp~-~LDLs~f~~g~~~~~~Y~L~AVV~H~G----GHYvayvR 1590 (1630)
..++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+........|+|+|||+|.| |||+||+|
T Consensus 228 ~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~-fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~ 306 (348)
T 3nhe_A 228 CIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVN-FPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCR 306 (348)
T ss_dssp EEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEE-CCSSCEECGGGBCTTCCCCEEEEEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCEE-CCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEC
T ss_conf 899988132986579998753456774145686230-3477587766067888998679999997048999964388881
Q ss_pred ECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 479996899829942270897889998621997544458
Q 000344 1591 SHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1591 ~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~qP~vl~ 1629 (1630)
.+..++||+|||+.|+.| ++++|+. -+|+||+
T Consensus 307 ~~~~~~W~~~nD~~V~~v-~~~~v~~------~~aY~Lf 338 (348)
T 3nhe_A 307 SPGTGEWHTFNDSSVTPM-SSSQVRT------SDAYLLF 338 (348)
T ss_dssp CTTTCCEEEEETTEEEEE-CGGGTCC------TTEEEEE
T ss_pred CCCCCCEEEEECCCCEEC-CHHHCCC------CCCEEEE
T ss_conf 699893799838980699-8888578------9836999
No 4
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=373.89 Aligned_cols=304 Identities=16% Similarity=0.219 Sum_probs=229.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 34566547898865442299999971299999981449998765---697469999999999975036899986427188
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---VGEPCVVCALYEIFTALSIASTDTRKEAVAPTS 1374 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~---~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~ 1374 (1630)
..++||.|+|| ||||||+||||+|+++|+++|+......... ....|+.++|+.||..|+.. ..++.|..
T Consensus 12 ~~~~GL~NlGN--TCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~-----~~~v~P~~ 84 (404)
T 2ayn_A 12 ELPCGLTNLGN--TCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT-----SSSIPPII 84 (404)
T ss_dssp CCCCEECCCSS--CHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH-----CSEECCHH
T ss_pred CCCCCCCCCCC--CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCCHHH
T ss_conf 99988654770--439899999987689999999964510134788885438999999999998638-----98388699
Q ss_pred HHHHHHHHCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCE
Q ss_conf 9999961289970000------00125499999999999986419999999873111236898866--787643323430
Q 000344 1375 LRIALSNLYPDSNFFQ------EAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDC--TNSACIVHSLFG 1446 (1630)
Q Consensus 1375 Lr~aL~ki~p~~~~F~------~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~--~~~~SiI~~LF~ 1446 (1630)
|+.+++...|. |. +++||||||||.+|||.||+++......+.. +......|.. ....++|+++|+
T Consensus 85 ~~~~l~~~~~~---f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~---e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 85 LLQFLHMAFPQ---FAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK---ETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHHHHHCGG---GGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC---------------------CCHHHHHTC
T ss_pred HHHHHHHHCCH---HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHCCCCCCHHHHHCC
T ss_conf 99999885700---202356788665489999999999999874435677522---100122100000113760245156
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCC--CEEEEE
Q ss_conf 278999971478853433434421351-25012234553124688889999984034-43468999876753--207888
Q 000344 1447 MDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH-QLACDPGAGGCEKL--NYIHHI 1522 (1630)
Q Consensus 1447 G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e-~~~Cd~~c~~C~k~--~~kk~~ 1522 (1630)
|.+.++++|..|+.++.+..++.|+.+ ++.. ....++.++|+.++.++ .+.|+ .|++. ..++..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~--------~~~~~l~~~L~~~~~e~l~~~c~----~c~~~~~~~k~~~ 226 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFIN--------QEVKYLFTGLKLRLQEEITKQSP----TLQRNALYIKSSK 226 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECS--------SSCCBHHHHHHHTTEECCCCEET----TTTEECCEEEEEE
T ss_pred EEEEEEEEECCCCCCCCCEEECCCCEEEEECC--------CCCCCHHHHHHHHCCCCEEECCH----HHCCCCCEEEEEE
T ss_conf 79999998257898168524225746876569--------98542999998754401036252----0098301555531
Q ss_pred EECCCCEEEEEEEECCCCC---CCCCCCCCCCCCCCEECCCCCCCC----------------------------------
Q ss_conf 6158972899998507886---320112222224310104334125----------------------------------
Q 000344 1523 LSTPPHVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG---------------------------------- 1565 (1630)
Q Consensus 1523 IsrlP~VLiIhL~r~~~~~---s~~kI~~~i~~fp~~LDLs~f~~g---------------------------------- 1565 (1630)
|.++|+||+|||+||.... ...|+...+. ||..|||.+|+..
T Consensus 227 i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (404)
T 2ayn_A 227 ISRLPAYLTIQMVRFFYKEKESVNAKVLKDVK-FPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSP 305 (404)
T ss_dssp EEECCSSEEEEEECBCCCCSSSSCCBCCCCCB-CCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------
T ss_pred HHHCCCCEEEEEEEEEEECCCCCEECCCCEEC-CCCEEEHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 72199716999998898246683100174464-68256776744855541020135677655315401333110335555
Q ss_pred ----------------CCCCCCEEEEEEEEEEC-----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCC-CC
Q ss_conf ----------------79998559999999949-----709999984799968998299422708978899986219-97
Q 000344 1566 ----------------LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG-HL 1623 (1630)
Q Consensus 1566 ----------------~~~~~~Y~L~AVV~H~G-----GHYvayvR~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~-~~ 1623 (1630)
......|+|+|||+|.| |||+||+|.. .++||+|||+.|+.| ++++|+..++.+ .-
T Consensus 306 ~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v-~~~~v~~~~~g~~~~ 383 (404)
T 2ayn_A 306 QKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIV-TPEDILRLSGGGDWH 383 (404)
T ss_dssp ------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCB-CHHHHGGGGSSSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECC-CCEEEEEECCCCEEC-CHHHHHHHHCCCCCC
T ss_conf 553334555554555768885399999999548999998869999899-992899606345666-799997630799776
Q ss_pred CCCCCC
Q ss_conf 544458
Q 000344 1624 QPQKHD 1629 (1630)
Q Consensus 1624 qP~vl~ 1629 (1630)
.|+||+
T Consensus 384 ~aYiLf 389 (404)
T 2ayn_A 384 IAYVLL 389 (404)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 289999
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=370.94 Aligned_cols=304 Identities=20% Similarity=0.277 Sum_probs=227.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 4566547898865442299999971299999981449998765--69746999999999997503689998642718899
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH--VGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1630)
Q Consensus 1299 ~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~--~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~Lr 1376 (1630)
+.+||.|+|| ||||||+||||+++++||++++......... ....++.++|+.+|..||... ....++|..|+
T Consensus 2 G~~GL~N~GN--tCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~---~~~~v~p~~~~ 76 (355)
T 3i3t_A 2 GHVGLRNLGN--TCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD---SCEAVNPTRFR 76 (355)
T ss_dssp -CCCBCCCSS--THHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS---SCCCBCCHHHH
T ss_pred CCCCCEECCC--CHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHH
T ss_conf 9747588982--669899999986789999999725488756789952699999999999984589---88744589999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCC-----------------CCCCC
Q ss_conf 9996128997000000125499999999999986419999999873-----1112368-----------------98866
Q 000344 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTE-----SVESNCM-----------------GSWDC 1434 (1630)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~-----s~e~~~~-----------------~sw~~ 1434 (1630)
.++....+. |.+++||||||||.+|||.||+++.......... ....... ..|..
T Consensus 77 ~~l~~~~~~---f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T 3i3t_A 77 AVFQKYVPS---FSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKR 153 (355)
T ss_dssp HHHHHHCGG---GCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHCHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999973842---28987667899999999999999765413787523567666764444322357778878899999998
Q ss_pred --CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCC
Q ss_conf --787643323430278999971478853433434421351-25012234553124688889999984034------434
Q 000344 1435 --TNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLA 1505 (1630)
Q Consensus 1435 --~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e------~~~ 1505 (1630)
....++|.++|+|.+.+++.|..|+.++.+ ++.|+.+ ++.... ....+..+++++|+.++..+ ++.
T Consensus 154 ~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~--~e~f~~lsl~i~~~---~~~~~~~sl~~~L~~~~~~e~l~~~n~~~ 228 (355)
T 3i3t_A 154 YLEREDSKIVDLFVGQLKSCLKCQACGYRSTT--FEVFCDLSLPIPKK---GFAGGKVSLRDCFNLFTKEEELESENAPV 228 (355)
T ss_dssp HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEE--EEEESSEEECCCC----------CBHHHHHHHHHCCEEECGGGCCC
T ss_pred HHHCCCCCCCCCCCEEEEEEEEECCCCCCCEE--ECCCEEECCCCCCC---CCCCCCCCHHHHHHHHCCCCCCCCCCCEE
T ss_conf 52316981545335799955893899998402--22234652567864---44567658999999857835458999855
Q ss_pred CCCCCCCCCCC--CEEEEEEECCCCEEEEEEEECCCC-CCCCCCCCCCCCCCC-EECCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 68999876753--207888615897289999850788-632011222222431-01043341257999855999999994
Q 000344 1506 CDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-ESFDDITATLAALSP-EIDISILYRGLDPKRRHSLVSVVCYY 1581 (1630)
Q Consensus 1506 Cd~~c~~C~k~--~~kk~~IsrlP~VLiIhL~r~~~~-~s~~kI~~~i~~fp~-~LDLs~f~~g~~~~~~Y~L~AVV~H~ 1581 (1630)
|+ +|+++ ..++..|.++|+||+|||+||... ....|+...+. ||. .||++.|+........|+|+|||+|.
T Consensus 229 C~----~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~-fp~~~l~l~~~~~~~~~~~~Y~L~avv~H~ 303 (355)
T 3i3t_A 229 CD----RCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVD-FPLQRLSLGDFASDKAGSPVYQLYALCNHS 303 (355)
T ss_dssp CS----SSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCB-CCSSCEECGGGBC----CCEEEEEEEEEEE
T ss_pred CC----CCCCCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEECCCCEE-CCCCCCCCHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 98----8788662379988113981309976020037898047886160-776546730211589999645999998826
Q ss_pred C----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 9----70999998479996899829942270897889998621997544458
Q 000344 1582 G----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1582 G----GHYvayvR~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~qP~vl~ 1629 (1630)
| |||+||+|. .++||+|||..|+.| ++++|+.. +|+||+
T Consensus 304 G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v-~~~~v~~~------~aYiLf 346 (355)
T 3i3t_A 304 GSVHYGHYTALCRC--QTGWHVYNDSRVSPV-SENQVASS------EGYVLF 346 (355)
T ss_dssp EETTEEEEEEEEEE--TTEEEEEETTEEEEE-CHHHHHTS------CCSEEE
T ss_pred CCCCCCEEEEEEEC--CCEEEEECCCCCEEC-CHHHCCCC------CCEEEE
T ss_conf 78999807999972--992899819871798-89990789------867999
No 6
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=368.94 Aligned_cols=284 Identities=18% Similarity=0.212 Sum_probs=223.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3456654789886544229999997129999998144999876569-------746999999999997503689998642
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVG-------EPCVVCALYEIFTALSIASTDTRKEAV 1370 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~~-------~~cv~~aL~~Lf~~L~~ss~~~~~~~v 1370 (1630)
..++||.|+|| ||||||+||||+++|+||++|+........... ..++.++|+.||..|+.. ...++
T Consensus 22 ~~~~GL~NlGN--TCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~----~~~~v 95 (415)
T 1vjv_A 22 QLPVGFKNMGN--TCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNK----SFKSV 95 (415)
T ss_dssp CCCCEECCCSS--CHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-----CCEE
T ss_pred CCCCCCEECCC--CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CCCCC
T ss_conf 89888773885--1399999999974799999997126544667764334441138999999999998607----99843
Q ss_pred CCHHHHHHHHHHCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71889999961289970000-------00125499999999999986419999999873111236898866787643323
Q 000344 1371 APTSLRIALSNLYPDSNFFQ-------EAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHS 1443 (1630)
Q Consensus 1371 sP~~Lr~aL~ki~p~~~~F~-------~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~SiI~~ 1443 (1630)
.|..|+.++....|. |. +++||||+|||.+|||.||+++.. ++|.+
T Consensus 96 ~p~~~~~~l~~~~~~---f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------------~~i~~ 148 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQ---FAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------------KFSED 148 (415)
T ss_dssp CCHHHHHHHHHHCGG---GGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------------------HHHTT
T ss_pred CHHHHHHHHHHHCCH---HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------------------------CHHHH
T ss_conf 779999999875850---210466777766668999999999999987343------------------------46999
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCC--CEE
Q ss_conf 430278999971478853433434421351-25012234553124688889999984034-43468999876753--207
Q 000344 1444 LFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH-QLACDPGAGGCEKL--NYI 1519 (1630)
Q Consensus 1444 LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e-~~~Cd~~c~~C~k~--~~k 1519 (1630)
+|+ .+.+++.|..|+.++....++.|+.+ ++... ...++.++|+.++.++ .+.|+ .|+.. ..+
T Consensus 149 ~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~--------~~~~l~~~L~~~~~e~i~~~c~----~c~~~~~a~k 215 (415)
T 1vjv_A 149 FRI-QFKTTIKDTANDNDITVKENESDSKLQCHISG--------TTNFMRNGLLEGLNEKIEKRSD----LTGANSIYSV 215 (415)
T ss_dssp TCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCT--------TCCBHHHHHHHHHEEC-------------CCCCEEE
T ss_pred HHH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCCC--------CCCHHHHHHHHHHHHHHHHCCC----CCCCCCCEEE
T ss_conf 998-61179997799987463135454366512566--------6123899999874455531461----2178642788
Q ss_pred EEEEECCCCEEEEEEEECCCCC---CCCCCCCCCCCCCCEECCCCCCCC-------------------------------
Q ss_conf 8886158972899998507886---320112222224310104334125-------------------------------
Q 000344 1520 HHILSTPPHVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG------------------------------- 1565 (1630)
Q Consensus 1520 k~~IsrlP~VLiIhL~r~~~~~---s~~kI~~~i~~fp~~LDLs~f~~g------------------------------- 1565 (1630)
+..|.++|+||+|||+||.... ...|+...+. ||..|||++|+..
T Consensus 216 ~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~-FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~ 294 (415)
T 1vjv_A 216 EKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVV-FPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRK 294 (415)
T ss_dssp EEEEEECBSEEEEEECCEEEETTTTEEEECCCCCB-CCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCC-CCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87702699715999988998378884043167647-99576767842833322212157999987533334566553102
Q ss_pred ---------------------------------------------CCCCCCEEEEEEEEEEC-----CEEEEEEEE-CCC
Q ss_conf ---------------------------------------------79998559999999949-----709999984-799
Q 000344 1566 ---------------------------------------------LDPKRRHSLVSVVCYYG-----QHYHCFAYS-HDQ 1594 (1630)
Q Consensus 1566 ---------------------------------------------~~~~~~Y~L~AVV~H~G-----GHYvayvR~-~~~ 1594 (1630)
......|+|+|||+|.| |||+||+|. ...
T Consensus 295 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~ 374 (415)
T 1vjv_A 295 FDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDE 374 (415)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCT
T ss_pred CCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCC
T ss_conf 25554444345310222012567765544333205333432323567884388999999358999998879999478889
Q ss_pred CCEEEEECCCCEEECCHHHHHHHHHCCCC-CCCCCC
Q ss_conf 96899829942270897889998621997-544458
Q 000344 1595 ERWIMYDDKTVKVVGSWSDVLSMCERGHL-QPQKHD 1629 (1630)
Q Consensus 1595 ~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~-qP~vl~ 1629 (1630)
++||+|||+.|+.| ++++|+..++.+.- .|+||+
T Consensus 375 ~~W~~fnD~~V~~v-~~~~v~~~~~g~~~~~aYiLf 409 (415)
T 1vjv_A 375 NKWYKFNDDKVSVV-EKEKIESLAGGGESDSALILM 409 (415)
T ss_dssp TCEEEEETTEEEEE-CHHHHHGGGCCTTSCEEEEEE
T ss_pred CCEEEEECCCCEEC-CHHHHHHHCCCCCCCEEEEEE
T ss_conf 94899678857672-799976420798766079999
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=366.53 Aligned_cols=281 Identities=15% Similarity=0.190 Sum_probs=220.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 34566547898865442299999971299999981449998765697469999999999975036899986427188999
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~Lr~ 1377 (1630)
.+.+||.|+|| ||||||+||||+|+++||++++..... ......++.++|+.+|..|+.+ ..++.|..|+.
T Consensus 4 ~g~~GL~NlGn--TCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~-----~~~~~~~~l~~ 74 (353)
T 1nb8_A 4 TGYVGLKNQGA--TCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHS-----DKPVGTKKLTK 74 (353)
T ss_dssp SSCCCBCCCST--TTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHC-----SSCBCCHHHHH
T ss_pred CCCCCCCCCCH--HHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHC-----CCCCCCHHHHH
T ss_conf 89987564745--449899999997779999999837877--7765440999999999988605-----88778779986
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 99612899700000012549999999999998641999999987311123689886678764332343027899997147
Q 000344 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1630)
Q Consensus 1378 aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1630)
.++. ..|.+++||||||||.+|||.||+++... ...++|+++|+|.+.+++.|..
T Consensus 75 ~~~~-----~~~~~~~QqDA~EFl~~LLd~L~~~~~~~--------------------~~~s~i~~~F~g~~~~~i~C~~ 129 (353)
T 1nb8_A 75 SFGW-----ETLDSFMQHDVQELCRVLLDNVENKMKGT--------------------CVEGTIPKLFRGKMVSYIQCKE 129 (353)
T ss_dssp HHTC-----CBTTTTTTSCHHHHHHHHHHHHHHHTTTS--------------------TTTTHHHHHHCEEEEEEEEESS
T ss_pred HCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCC--------------------CCCCHHHHHCEEEEEEEEEECC
T ss_conf 4188-----77786532639999999999999884488--------------------7555123503058999999256
Q ss_pred CCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCCC-CEEEEEEECCCCE
Q ss_conf 8853433434421351-25012234553124688889999984034------43468999876753-2078886158972
Q 000344 1458 CGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL-NYIHHILSTPPHV 1529 (1630)
Q Consensus 1458 Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e------~~~Cd~~c~~C~k~-~~kk~~IsrlP~V 1529 (1630)
|+..|.+ +++|+.+ ++.. ...++.++|..++..+ +|.|+ .|+.. ..++..|.++|+|
T Consensus 130 C~~~s~~--~e~f~~LsL~i~---------~~~~l~~~L~~~~~~E~l~~~~~~~C~----~c~~~~a~k~~~i~~lP~v 194 (353)
T 1nb8_A 130 VDYRSDR--REDYYDIQLSIK---------GKKNIFESFVDYVAVEQLDGDNKYDAG----EHGLQEAEKGVKFLTLPPV 194 (353)
T ss_dssp SCCEEEE--EEEESCEEECCT---------TCSBHHHHHHHHTCCEEECTTTCEECG----GGCEECEEEEEEESCCCSE
T ss_pred CCCEECE--EEEEEEEEEEEC---------CCCCHHHHHHHHHCCCCCCCCCCCCCC----CCCCEEEEEEEEHHCCCCC
T ss_conf 8970022--223279988979---------976457799985173424787531477----6751756898884009972
Q ss_pred EEEEEEECCCCC---CCCCCCCCCCCCCCEECCCCCCCCCC--CCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEEE
Q ss_conf 899998507886---32011222222431010433412579--998559999999949----709999984799968998
Q 000344 1530 FTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRGLD--PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMY 1600 (1630)
Q Consensus 1530 LiIhL~r~~~~~---s~~kI~~~i~~fp~~LDLs~f~~g~~--~~~~Y~L~AVV~H~G----GHYvayvR~~~~~~W~~f 1600 (1630)
|+|||+||.... ...|+...+. ||..|||++|+...+ ....|+|+|||+|.| |||+||+|+...++||+|
T Consensus 195 L~i~LkRF~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~f 273 (353)
T 1nb8_A 195 LHLQLMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKF 273 (353)
T ss_dssp EEEEECCCC--------CCCCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEE
T ss_pred EEEEEECEEEECCCCCEEECCCEEE-CCCEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEE
T ss_conf 5999836798423595075582897-797665235221337899815999999997478988679999945999988999
Q ss_pred ECCCCEEECCHHHHHHHHHCCC---------CCCCCCC
Q ss_conf 2994227089788999862199---------7544458
Q 000344 1601 DDKTVKVVGSWSDVLSMCERGH---------LQPQKHD 1629 (1630)
Q Consensus 1601 DD~~Vt~V~swe~Vl~~c~~~~---------~qP~vl~ 1629 (1630)
||+.|+.| ++++|+..+..|. -+|+||+
T Consensus 274 nD~~V~~v-~~~~v~~~~~gg~~~~~~~~~~~~aYiLf 310 (353)
T 1nb8_A 274 DDDVVSRC-TKEEAIEHNYGGHDDDLSVRHCTNAYMLV 310 (353)
T ss_dssp ETTEEEEC-CHHHHTGGGSCCC-------CCEEEEEEE
T ss_pred ECCCEEEC-CHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 89602897-88999887238976544467688079999
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=364.51 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=220.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 33456654789886544229999997129999998144999876569746999999999997503689998642718899
Q 000344 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1630)
Q Consensus 1297 ~~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~Lr 1376 (1630)
..+.+||.|+|| ||||||+||||+++++||++++.... .......++.++|+.+|..|+.+. .++.|..|.
T Consensus 172 ~~g~~GL~NlGn--TCYmNSvLQ~L~~~~~fr~~~~~~~~--~~~~~~~~~~~~l~~lf~~l~~~~-----~~~~~~~l~ 242 (522)
T 2f1z_A 172 HTGYVGLKNQGA--TCYMNSLLQTLFFTNQLRKAVYMMPT--EGDDSSKSVPLALQRVFYELQHSD-----KPVGTKKLT 242 (522)
T ss_dssp TTSCCCBCCC----CTTHHHHHHHHHTCHHHHHHHHTCCC--CSSCTTTCHHHHHHHHHHHHHHCS-----SCBCCTTHH
T ss_pred CCCCCCEECCCC--CHHHHHHHHHHHCCHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCHHHH
T ss_conf 678544113863--18888999998612999999960665--677656528999999999986379-----855767888
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 99961289970000001254999999999999864199999998731112368988667876433234302789999714
Q 000344 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCY 1456 (1630)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~SiI~~LF~G~l~s~i~C~ 1456 (1630)
..++. + .|.+++||||||||.+|||.||+++... ...++|.++|+|++.++++|.
T Consensus 243 ~~~~~--~---~~~~~~QqDa~Efl~~LLd~L~~~l~~~--------------------~~~s~i~~lF~G~~~s~i~C~ 297 (522)
T 2f1z_A 243 KSFGW--E---TLDSFMQHDVQELCRVLLDNVENKMKGT--------------------CVEGTIPKLFRGKMVSYIQCK 297 (522)
T ss_dssp HHTCC--C---TTTSSTTSCHHHHHHHHHHHHHHHHTTS--------------------TTTTHHHHHHCEEEEEEECCS
T ss_pred HHCCC--C---CCCCCCCCCHHHHHHHHHHHHHHHCCCC--------------------CCCCCHHHHEEEEEEEEEECC
T ss_conf 64187--6---5787626469999999999998641588--------------------656602131337999988727
Q ss_pred CCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCCC-CEEEEEEECCCC
Q ss_conf 78853433434421351-25012234553124688889999984034------43468999876753-207888615897
Q 000344 1457 SCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL-NYIHHILSTPPH 1528 (1630)
Q Consensus 1457 ~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e------~~~Cd~~c~~C~k~-~~kk~~IsrlP~ 1528 (1630)
.|+.+|.+ +++|+.+ ++.. ...++.++|+.++..+ +|.|+ .|+.. ..++..|.++|+
T Consensus 298 ~C~~~s~~--~e~f~~LsL~i~---------~~~~l~~~L~~~~~~E~l~~~n~~~C~----~c~~~~a~k~~~i~~lP~ 362 (522)
T 2f1z_A 298 EVDYRSDR--REDYYDIQLSIK---------GKKNIFESFVDYVAVEQLDGDNKYDAG----EHGLQEAEKGVKFLTLPP 362 (522)
T ss_dssp SSCCCCCE--EEEESCEEECCT---------TCCBHHHHHHHHTCEEEECTTSCBCCG----GGCSBCEEEEEEESCCCS
T ss_pred CCCCEEEE--EEEEEEEEEEEC---------CCCCCHHHHHHHHCEEECCCCCEEECC----CCCCCCEEEEEEEECCCC
T ss_conf 89955536--632078988847---------864406799874050222776204047----677653679999341996
Q ss_pred EEEEEEEECCCC---CCCCCCCCCCCCCCCEECCCCCCCCCC--CCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEE
Q ss_conf 289999850788---632011222222431010433412579--998559999999949----70999998479996899
Q 000344 1529 VFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGLD--PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIM 1599 (1630)
Q Consensus 1529 VLiIhL~r~~~~---~s~~kI~~~i~~fp~~LDLs~f~~g~~--~~~~Y~L~AVV~H~G----GHYvayvR~~~~~~W~~ 1599 (1630)
||+|||+||... ....|+...+. ||..|||++|+...+ ....|+|+|||+|.| |||+||+|....++||+
T Consensus 363 vL~i~LkRF~~~~~~~~~~Ki~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 441 (522)
T 2f1z_A 363 VLHLQLMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK 441 (522)
T ss_dssp EEEEEECCEEECSSSSCEEECCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEE
T ss_pred EEEEEEEEEEECCCCCCCEECCCEEE-CCCEECCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
T ss_conf 38999874788166785267682796-78813443540544689983799999999645699866899994389998999
Q ss_pred EECCCCEEECCHHHHHHHHHCC---------CCCCCCCC
Q ss_conf 8299422708978899986219---------97544458
Q 000344 1600 YDDKTVKVVGSWSDVLSMCERG---------HLQPQKHD 1629 (1630)
Q Consensus 1600 fDD~~Vt~V~swe~Vl~~c~~~---------~~qP~vl~ 1629 (1630)
|||+.|+.| ++++|+..+..| .-+|+||+
T Consensus 442 fnD~~V~~v-~~~~v~~~~~Gg~~~~~~~~~~~~aYiLf 479 (522)
T 2f1z_A 442 FDDDVVSRC-TKEEAIEHNYGGHDDDLSVRHCTNAYMLV 479 (522)
T ss_dssp EETTEEEEC-CHHHHSTTSSCCC--------CEEEEEEE
T ss_pred EECCEEEEC-CHHHHHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 978324899-89999886338875433457689349999
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=364.32 Aligned_cols=299 Identities=20% Similarity=0.277 Sum_probs=220.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHCCCC-----CCCCCCC
Q ss_conf 45665478988654422999999712999999814499987--6569746999999999997503689-----9986427
Q 000344 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTD-----TRKEAVA 1371 (1630)
Q Consensus 1299 ~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~--~~~~~~cv~~aL~~Lf~~L~~ss~~-----~~~~~vs 1371 (1630)
+.+||.|+|| ||||||+||+|+|+|+|+++|+...+... ......|+.++|..+|..++..... .....+.
T Consensus 140 G~~GL~NlGN--TCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 217 (476)
T 3mhs_A 140 GLSGLINMGS--TCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNR 217 (476)
T ss_dssp CCCCCCCSSS--THHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCS
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9978770884--67998999998678999999874503554457886410589999999999612033334566655657
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 18899999612899700000012549999999999998641999999987311123689886678764332343027899
Q 000344 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFE 1451 (1630)
Q Consensus 1372 P~~Lr~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~SiI~~LF~G~l~s 1451 (1630)
|..+...+..++.....|.+++||||+|||.+|||.||+++........... . .......++|+++|+|.+.+
T Consensus 218 ~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~--~-----~~~~~~~s~i~~~F~G~l~~ 290 (476)
T 3mhs_A 218 QTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVS--R-----ANNKQCECIVHTVFEGSLES 290 (476)
T ss_dssp CHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC--------------CCCSCCSHHHHHSCEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--C-----CCCCCCCCCCEEECCEEEEE
T ss_conf 5008999999887451238887759999999999999999764156653345--4-----45566888002113259998
Q ss_pred EEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCCC-----CCCCCCCCCCCCC--CEEEEEE
Q ss_conf 9971478853433434421351-250122345531246888899999840344-----3468999876753--2078886
Q 000344 1452 RMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ-----LACDPGAGGCEKL--NYIHHIL 1523 (1630)
Q Consensus 1452 ~i~C~~Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e~-----~~Cd~~c~~C~k~--~~kk~~I 1523 (1630)
+++|..|+.+|.+. +++|+.+ ++. .+..+++++|+.++..+. +.|+ +|+.. ..++..|
T Consensus 291 ~~~C~~C~~~s~~~-~e~f~~LsL~i---------~~~~sl~~~L~~~~~~E~l~~~~~~C~----~C~~~~~a~k~~~i 356 (476)
T 3mhs_A 291 SIVCPGCQNNSKTT-IDPFLDLSLDI---------KDKKKLYECLDSFHKKEQLKDFNYHCG----ECNSTQDAIKQLGI 356 (476)
T ss_dssp EEECTTTCCCCEEE-EEEESCEEECC---------TTCCBHHHHHHHHHCCEECSSCCCEET----TTTEECCCEEEEEE
T ss_pred EEEECCCCCEECCC-CCCHHHHCCCH---------HHHHHHHHHHHHHCCHHHCCCCCCCCC----CCCCCCCEEEEEEC
T ss_conf 89989999851786-56666613201---------246689999998638422147787688----66885657899870
Q ss_pred ECCCCEEEEEEEECCC--CCCCCCCCCCCCCCCCEECCCCCCCCC----------CCCCCEEEEEEEEEEC----CEEEE
Q ss_conf 1589728999985078--863201122222243101043341257----------9998559999999949----70999
Q 000344 1524 STPPHVFTTVLGWQNT--CESFDDITATLAALSPEIDISILYRGL----------DPKRRHSLVSVVCYYG----QHYHC 1587 (1630)
Q Consensus 1524 srlP~VLiIhL~r~~~--~~s~~kI~~~i~~fp~~LDLs~f~~g~----------~~~~~Y~L~AVV~H~G----GHYva 1587 (1630)
.++|+||+|||+||.. .....|+...+. ||..|||++|+... .+...|+|+|||+|.| |||+|
T Consensus 357 ~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~-fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 435 (476)
T 3mhs_A 357 HKLPSVLVLQLKRFEHLLNGSNRKLDDFIE-FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIA 435 (476)
T ss_dssp EEBCSEEEEEECCEEECTTSCEEECCCCCB-CCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCCCEEECCEEEC-CCCEEECHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 149711399844021548997178987873-8970003432375323432234678997389999999689998875499
Q ss_pred EEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 998479996899829942270897889998621997544458
Q 000344 1588 FAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQKHD 1629 (1630)
Q Consensus 1588 yvR~~~~~~W~~fDD~~Vt~V~swe~Vl~~c~~~~~qP~vl~ 1629 (1630)
|+|.. +++||+|||+.|+.| ++++|+.. +|+||+
T Consensus 436 ~vr~~-~~~W~~fnD~~V~~v-~~~~v~~~------~aYiLf 469 (476)
T 3mhs_A 436 FCKIS-GGQWFKFNDSMVSSI-SQEEVLKE------QAYLLF 469 (476)
T ss_dssp EEECT-TSCEEEEETTEEEEE-CHHHHTTS------CEEEEE
T ss_pred EEECC-CCCEEEEECCCEEEC-CHHHHCCC------CCEEEE
T ss_conf 99889-891899949815899-98995669------867999
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=357.94 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHHHCCCC----------
Q ss_conf 34566547898865442299999971299999981449998---76569746999999999997503689----------
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE---HIHVGEPCVVCALYEIFTALSIASTD---------- 1364 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~---~~~~~~~cv~~aL~~Lf~~L~~ss~~---------- 1364 (1630)
.+.+||.|+|| ||||||+||||+++++||.+|+...... .......++.++|+.||..|+.....
T Consensus 342 ~G~~GL~NlGN--TCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~ 419 (854)
T 3ihp_A 342 PGYTGIRNLGN--SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE 419 (854)
T ss_dssp TTCCCBCCCSS--CHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred CCCCCEEECCC--CEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88655176677--6203379999857299999998543443025667854118899999999874566454442112222
Q ss_pred ------CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------99864271889999961289970000001254999999999999864199999998731112368988667876
Q 000344 1365 ------TRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSA 1438 (1630)
Q Consensus 1365 ------~~~~~vsP~~Lr~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~ 1438 (1630)
.....+.|..|+.+++...+. |.+++||||+|||.+|||.||+++.. .
T Consensus 420 ~~~~~~~~~~~isP~~f~~~l~~~~~~---F~~~~QQDA~EFl~~LLd~L~~el~~-----------------------~ 473 (854)
T 3ihp_A 420 RVPEQKEVQDGIAPRMFKALIGKGHPE---FSTNRQQDAQEFFLHLINMVERNCRS-----------------------S 473 (854)
T ss_dssp ---------CCBCCHHHHHHHTTTCTT---TTSSSCCBHHHHHHHHHHHHHHTCTT-----------------------S
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHCC-----------------------C
T ss_conf 333334677754819999998640331---12144337899999999999987365-----------------------6
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEE---CCHHHHHHH-------------H--------HHCCCCCHHHH
Q ss_conf 43323430278999971478853433434421351---250122345-------------5--------31246888899
Q 000344 1439 CIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---INASALRTM-------------K--------VMCAESSLDEL 1494 (1630)
Q Consensus 1439 SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l---I~as~l~~~-------------~--------~~~~~~sledl 1494 (1630)
++|.++|+|.+.++++|..|+.++.+ ++.|+.+ |+....... . ...+..+|+++
T Consensus 474 s~i~~lF~G~l~s~i~C~~C~~vs~t--~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dc 551 (854)
T 3ihp_A 474 ENPNEVFRFLVEEKIKCLATEKVKYT--QRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSC 551 (854)
T ss_dssp CCGGGGTCEEEEEEEEETTTTEEEEE--EEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHH
T ss_pred CCCHHHCCCEEEEEEEECCCCCEEEE--EEECEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 88222107358899996489977677--6306478845786323442100010011110002355443245677779999
Q ss_pred HHHHHCCCC---CCCCCCCCCCCCC--CEEEEEEECCCCEEEEEEEECCCC--CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999840344---3468999876753--207888615897289999850788--632011222222431010433412
Q 000344 1495 LNLVEMNHQ---LACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYR 1564 (1630)
Q Consensus 1495 Lk~~~~~e~---~~Cd~~c~~C~k~--~~kk~~IsrlP~VLiIhL~r~~~~--~s~~kI~~~i~~fp~~LDLs~f~~ 1564 (1630)
|+.|+..+. |.|+ .|+.+ ..++..|.++|+||+|||+||... ....|+...+. ||..|||++|+.
T Consensus 552 L~~f~~~E~Le~y~C~----~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~-FP~~LDl~~y~~ 623 (854)
T 3ihp_A 552 LEAYGAPEQVDDFWST----ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIE-MPEELDISQLRG 623 (854)
T ss_dssp HHHHHSCEEEEEEEET----TTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECC-CCSEEECGGGBC
T ss_pred HHHHCCCEEEEEEECC----CCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEE-CCCCEEHHHHCC
T ss_conf 9985584075331035----56873005388882128966799945313567773277886985-688070688506
Done!