Query 000345
Match_columns 1630
No_of_seqs 292 out of 717
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 1E-142 3E-147 1325.8 61.1 1468 1-1611 9-1600(1610)
2 PLN03076 ARF guanine nucleotid 100.0 5E-132 1E-136 1331.0 102.1 1057 4-1138 11-1514(1780)
3 KOG0929 Guanine nucleotide exc 100.0 1.1E-94 2.4E-99 929.4 54.2 996 14-1138 11-1323(1514)
4 KOG0928 Pattern-formation prot 100.0 4E-66 8.7E-71 650.0 69.0 992 26-1118 42-1333(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 6E-28 1.3E-32 261.7 17.4 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.8 1.5E-17 3.2E-22 216.4 22.8 711 249-1111 21-1011(1024)
7 PF09324 DUF1981: Domain of un 99.5 4.1E-15 8.8E-20 141.7 5.0 79 771-849 8-86 (86)
8 KOG1846 Uncharacterized conser 99.1 2.3E-08 4.9E-13 122.4 28.5 439 640-1132 846-1351(1777)
9 PLN03076 ARF guanine nucleotid 98.8 0.00029 6.2E-09 99.0 51.3 532 946-1618 1130-1775(1780)
10 KOG1848 Uncharacterized conser 98.6 1.4E-06 2.9E-11 113.4 18.8 470 1074-1595 9-565 (1610)
11 PF01602 Adaptin_N: Adaptin N 90.4 66 0.0014 41.6 30.4 145 693-873 55-201 (526)
12 PTZ00429 beta-adaptin; Provisi 90.4 81 0.0018 42.6 27.5 285 12-400 108-398 (746)
13 KOG1248 Uncharacterized conser 81.3 2.4E+02 0.0053 39.2 31.9 332 710-1215 91-422 (1176)
14 PF03378 CAS_CSE1: CAS/CSE pro 80.2 1.4E+02 0.0029 38.0 21.0 278 711-1096 66-353 (435)
15 PF12348 CLASP_N: CLASP N term 79.1 81 0.0017 35.9 17.4 176 695-899 27-211 (228)
16 PF01602 Adaptin_N: Adaptin N 73.1 2.8E+02 0.0062 35.7 22.5 270 21-367 54-335 (526)
17 PF11864 DUF3384: Domain of un 72.4 64 0.0014 41.3 15.5 139 651-831 207-353 (464)
18 PF02985 HEAT: HEAT repeat; I 71.8 7.3 0.00016 29.7 4.2 28 955-982 2-29 (31)
19 PTZ00429 beta-adaptin; Provisi 69.8 4.1E+02 0.0089 36.2 31.8 150 6-170 140-300 (746)
20 PF14500 MMS19_N: Dos2-interac 67.7 69 0.0015 37.7 13.1 75 795-872 96-171 (262)
21 PF12348 CLASP_N: CLASP N term 66.8 96 0.0021 35.2 14.1 104 254-368 23-126 (228)
22 KOG0930 Guanine nucleotide exc 66.1 4.1 9E-05 46.3 2.5 22 438-459 151-172 (395)
23 KOG1949 Uncharacterized conser 63.7 1.1E+02 0.0024 39.8 14.2 109 964-1113 185-294 (1005)
24 PF08427 DUF1741: Domain of un 63.2 1.5E+02 0.0033 34.3 14.3 67 946-1012 58-135 (237)
25 KOG2023 Nuclear transport rece 56.2 1.7E+02 0.0037 38.1 13.9 134 694-851 150-285 (885)
26 KOG0929 Guanine nucleotide exc 54.1 43 0.00094 47.5 9.3 41 792-832 1185-1226(1514)
27 PF12719 Cnd3: Nuclear condens 54.1 1.3E+02 0.0029 35.9 12.8 72 14-85 69-149 (298)
28 KOG2160 Armadillo/beta-catenin 53.8 2.8E+02 0.006 33.8 14.8 117 710-854 122-243 (342)
29 KOG1062 Vesicle coat complex A 52.2 7.5E+02 0.016 33.4 22.5 145 7-167 143-303 (866)
30 PF12717 Cnd1: non-SMC mitotic 52.0 1.2E+02 0.0026 33.4 10.9 90 709-828 18-108 (178)
31 PF12755 Vac14_Fab1_bd: Vacuol 47.6 97 0.0021 30.7 8.3 73 860-981 23-95 (97)
32 KOG1824 TATA-binding protein-i 47.5 6.5E+02 0.014 34.6 17.5 221 638-876 435-663 (1233)
33 KOG1993 Nuclear transport rece 45.8 9.2E+02 0.02 32.6 18.4 116 954-1115 527-648 (978)
34 KOG2023 Nuclear transport rece 45.7 1.1E+02 0.0024 39.7 10.2 162 711-893 123-284 (885)
35 PF02985 HEAT: HEAT repeat; I 44.7 45 0.00098 25.4 4.4 29 717-745 1-29 (31)
36 KOG1248 Uncharacterized conser 44.6 6E+02 0.013 35.7 17.2 126 724-872 662-793 (1176)
37 KOG1824 TATA-binding protein-i 43.6 1.1E+03 0.023 32.7 24.0 261 791-1113 15-288 (1233)
38 PF10508 Proteasom_PSMB: Prote 41.8 9E+02 0.02 31.3 25.2 225 792-1111 88-319 (503)
39 PF11640 TAN: Telomere-length 41.2 2.5E+02 0.0054 30.2 11.1 126 959-1112 10-141 (155)
40 KOG2956 CLIP-associating prote 38.3 5E+02 0.011 32.8 13.9 198 953-1183 287-494 (516)
41 PF09324 DUF1981: Domain of un 38.0 70 0.0015 30.9 5.6 53 1050-1108 33-85 (86)
42 PF12830 Nipped-B_C: Sister ch 36.4 1.3E+02 0.0028 33.4 8.3 89 49-142 7-96 (187)
43 KOG1062 Vesicle coat complex A 36.0 1.3E+03 0.028 31.4 30.4 73 813-889 262-337 (866)
44 KOG0931 Predicted guanine nucl 34.3 26 0.00056 42.8 2.3 19 438-456 288-306 (627)
45 cd00020 ARM Armadillo/beta-cat 33.5 78 0.0017 31.3 5.5 111 717-850 8-119 (120)
46 KOG2274 Predicted importin 9 [ 29.5 1.5E+02 0.0033 39.8 8.1 95 265-366 550-647 (1005)
47 PF12719 Cnd3: Nuclear condens 29.1 7.3E+02 0.016 29.6 13.6 102 715-844 26-136 (298)
48 PF12755 Vac14_Fab1_bd: Vacuol 28.6 1.3E+02 0.0028 29.8 5.8 73 776-851 24-96 (97)
49 cd00171 Sec7 Sec7 domain; Doma 27.3 44 0.00096 37.1 2.6 22 438-459 92-113 (185)
50 PF12783 Sec7_N: Guanine nucle 27.2 5.2E+02 0.011 28.0 10.9 87 659-747 8-104 (168)
51 smart00222 Sec7 Sec7 domain. D 26.4 48 0.001 36.9 2.7 22 438-459 93-114 (187)
52 PF05004 IFRD: Interferon-rela 26.2 1.2E+03 0.026 28.1 19.1 155 1049-1215 57-213 (309)
53 PF12717 Cnd1: non-SMC mitotic 25.9 6.2E+02 0.013 27.7 11.3 136 729-899 1-137 (178)
54 PF08167 RIX1: rRNA processing 25.1 9E+02 0.02 26.2 12.4 101 262-374 4-110 (165)
55 cd00020 ARM Armadillo/beta-cat 24.5 1.8E+02 0.004 28.5 6.4 69 13-81 11-80 (120)
56 PF04826 Arm_2: Armadillo-like 24.1 6.9E+02 0.015 29.3 11.7 130 9-142 12-144 (254)
57 PF08767 CRM1_C: CRM1 C termin 23.5 9.6E+02 0.021 29.1 13.2 171 715-898 18-198 (319)
58 PF10521 DUF2454: Protein of u 22.9 1.3E+03 0.028 27.3 16.2 156 947-1136 113-275 (282)
59 PF01369 Sec7: Sec7 domain; I 22.7 62 0.0013 36.1 2.7 22 438-459 96-117 (190)
60 PF11640 TAN: Telomere-length 21.9 5.1E+02 0.011 27.8 9.4 104 795-898 18-141 (155)
61 KOG4646 Uncharacterized conser 21.8 5.8E+02 0.013 27.0 9.0 110 47-162 55-169 (173)
62 KOG1766 Enhancer of rudimentar 21.8 1.2E+02 0.0027 29.4 3.9 50 1042-1091 13-65 (104)
63 PF11864 DUF3384: Domain of un 20.2 1.9E+03 0.04 28.1 21.0 55 954-1009 302-357 (464)
64 PF13646 HEAT_2: HEAT repeats; 20.1 4.2E+02 0.009 24.7 7.5 49 19-77 10-58 (88)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-142 Score=1325.84 Aligned_cols=1468 Identities=31% Similarity=0.370 Sum_probs=1092.0
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCc----ccC-chHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000345 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1630)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~----l~~-~~~~l~Pfllac~sk~~kl~~iAL~~lq 75 (1630)
|++.++|.+||++|++|+||||++||+|||+++.+||+..+.++ +.. +++|+.||++||++|+.|++.+||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999999876 444 8899999999999999999999999999
Q ss_pred HHHccCCCCcchHHHHHH-HHHhccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHH
Q 000345 76 KLISHDAVAPSALKEIFS-MLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1630)
Q Consensus 76 kLi~~~~i~~~~l~~Il~-~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA 154 (1630)
||..|++++++...++++ .|+..... |.+|||+||++|.++++|...+.|+.|.+++.+||+|+. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 999999999965555544 44443332 578999999999999999999999999999999999975 5788 999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCCCCccccccccCCcccccCCCcccccccccCCCcchhhhhhhhHHHHHHHHH
Q 000345 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1630)
Q Consensus 155 ~ATL~Qlv~~VF~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~ 234 (1630)
+||+||+|..|||||..++.. .+..-+...+....+. +......+++..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence 999999999999999965331 1100000000000000 00013455778899999999
Q ss_pred HHHHhhcCCCCCcc-cccchhhHhHHHHHHHHHHhCcccccCCHHHH--HHHHHHHHHHHHHhhccccC-------CC--
Q 000345 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE-------NE-- 302 (1630)
Q Consensus 235 dLc~L~~~~~p~~l-~~~~~~k~~~LeLIesiL~n~~~~F~~~~~l~--~llr~~lc~lLi~~ls~n~~-------~~-- 302 (1630)
++|.+..+..++|| .+.+.++..|+|++|+++.+....+..|.+|. ++++..+||++.++++.++. .+
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 57788999999999999999999999999999 99999999999997765421 00
Q ss_pred --------------------CCCCCccHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 000345 303 --------------------GETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1630)
Q Consensus 303 --------------------~~~~~~~F~--~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~~l~~~~~~w~r~l~LE~l 360 (1630)
+..+...++ .-..+.+...+..|-..+..++++|++.+++.-..+.+.|+|.+++|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 000001111 0112223333444556777899999999999988899999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccccc-------cccchhhHHhhhc-cccCcccccccccccc
Q 000345 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1630)
Q Consensus 361 ~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~-------~~~s~~sl~~~~g-~f~~k~kGi~~ll~~d 432 (1630)
++++.++..++.++.|+||++...++++..+..+.+++.-..+ ++...++...+.| .|.+|.+||+|-.+.|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 9999999999999999999999999999999999998874321 1222223333334 7888889999865555
Q ss_pred cCCCcccCCcchhhHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCcccC-cchHHHHHHHHHhhHHHHHHHH
Q 000345 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDALS 511 (1630)
Q Consensus 433 ~~~~~~~l~~Ea~~I~~~~e~~a~~i~sv~~l~d~~i~~g~~~~p~~e~~~~~~~~~-~~~~~~~~m~~~~W~~iLaalS 511 (1630)
+.....++--+.-.+..+.|++..+.++++.+.+.+.+.+.+..+.....+...-.+ ...+....|+.+.|+.++++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalk 541 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALK 541 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhh
Confidence 432222111111122223333333334444433222222211111100011111011 1234556789999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhccCCcccccccc-cccCCCCCc------------
Q 000345 512 LILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR------------ 578 (1630)
Q Consensus 512 ~~l~~s~De~~~~~lL~~fQ~~~~vaG~L~L~~~RDafl~~L~k~t~~~~~~~~~~~~-~~~s~~~~~------------ 578 (1630)
..+..+.|+.+.++++.+++.++..||..+-+++..+++..||+|....|.+...... +..+|..++
T Consensus 542 s~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfet 621 (1610)
T KOG1848|consen 542 STLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFET 621 (1610)
T ss_pred hhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEee
Confidence 9999999999999999999999999999999999999999999999854432211110 001111000
Q ss_pred ----------cc----cccccCCcccccchhHHHHHHHHH----------------------hhHhhcC-CCCccccccc
Q 000345 579 ----------SE----SLVDQKDNIVLTPKNVQVLETLAA----------------------LDRAIHS-PHATTQEVST 621 (1630)
Q Consensus 579 ----------~~----~~~~~~~~~~l~~rni~vL~tLq~----------------------~d~~l~~-~~~~~~~~~~ 621 (1630)
+. ......+++.++.+|++-.+++-+ +|...+. |+.+.+....
T Consensus 622 w~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t 701 (1610)
T KOG1848|consen 622 WDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVIT 701 (1610)
T ss_pred ccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHh
Confidence 00 011235678899999984444332 2222221 2222222111
Q ss_pred cCccccccc----cCccchhhHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHhhhcCCCCCCCCCCCCCCCCeeehHH
Q 000345 622 ASSKLARES----SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVE 697 (1630)
Q Consensus 622 ~~~~~~~~~----~~~~~dl~~l~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~L~ 697 (1630)
..+.-+.++ ....+|+-+++++.+++|.+++.++..++..++.||.+++++.+.....
T Consensus 702 ~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~------------------ 763 (1610)
T KOG1848|consen 702 SSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETV------------------ 763 (1610)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhh------------------
Confidence 111111111 1224577789999999999999999999999999999999987654321
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHH
Q 000345 698 RMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSI 777 (1630)
Q Consensus 698 kL~eva~~N~~R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 777 (1630)
+..+..|....|..+..|+.....++|+..+..|++.|++.+...+....+...+.+......++......+..-
T Consensus 764 -----~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es 838 (1610)
T KOG1848|consen 764 -----CSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFES 838 (1610)
T ss_pred -----ccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhh
Confidence 223456777888888888888888888888888888888888877776655443333333333332222233344
Q ss_pred HHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcc---cchhHHHHHHHHHHHHHhccC
Q 000345 778 ECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGL 854 (1630)
Q Consensus 778 q~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~---~~~~lv~~aF~~LqlI~~DfL 854 (1630)
+.+++..++..+..++.+|+|...+++|.+|+|++|+.+-+||..||++|+++++. +++++|+.||++|++|++|||
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 44666666777888999999999999999999999999999999999999988764 588999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhhhhcc
Q 000345 855 SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSN 934 (1630)
Q Consensus 855 ~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~ 934 (1630)
++||.+|+..|||++..|++|+.|+||||||||+||+++||+++++.. .-++.... + ..|+..+.
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S--~sed~~~~---------~---~~e~~~ss- 983 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFS--TSEDSCAY---------N---SVEDLYSS- 983 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhc--cchhhhhh---------c---chhhhccc-
Confidence 999999999999999999999999999999999999999999985321 11111100 0 01111111
Q ss_pred ccccCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhcc
Q 000345 935 LDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAAT 1014 (1630)
Q Consensus 935 ~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~ 1014 (1630)
.+.+..-+++||+.||..|.++|.|+|+||||||+||||||+++||+.|++.+|+.|+|+|++|||+....-.
T Consensus 984 -----~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~-- 1056 (1610)
T KOG1848|consen 984 -----MKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN-- 1056 (1610)
T ss_pred -----ccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--
Confidence 1223344789999999999999999999999999999999999999999999999999999999999885321
Q ss_pred CCcccccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCC
Q 000345 1015 SSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNG 1094 (1630)
Q Consensus 1015 ~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~ 1094 (1630)
.+||+|+++ ||||.||.+++++|++++|..||..|..+.+|.+.|+.+|+|+.++....
T Consensus 1057 --~~ewngkei-------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~ 1115 (1610)
T KOG1848|consen 1057 --VSEWNGKEI-------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDI 1115 (1610)
T ss_pred --hhhhcchhH-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC
Confidence 355665542 69999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhcCCCCCChH---HHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHH--HHHhhCC
Q 000345 1095 SKEVSLAAINCLQTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFD 1169 (1630)
Q Consensus 1095 ~~els~a~~~~L~~lL~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~~ 1169 (1630)
+.+++.++++|||+++......++++.. ....++..|+.+++.++.+..+...++.||.+++|+..|+ .+++.+.
T Consensus 1116 s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~ 1195 (1610)
T KOG1848|consen 1116 SPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFG 1195 (1610)
T ss_pred ChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchh
Confidence 9999999999999999999998888776 4556667787777776666666678899999999998888 4566778
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHccCCCCCCCC--CCCC
Q 000345 1170 DRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKE 1247 (1630)
Q Consensus 1170 ~~~~~~~l~il~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~ 1247 (1630)
.+.++..+..++.++.||.++. +..|... ||+|.+|++.++.+-+++ ...+|..++.....+.+.+|.-. ++..
T Consensus 1196 ~e~~~~slll~~kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~ 1271 (1610)
T KOG1848|consen 1196 IEEIKDSLLLVRKAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL 1271 (1610)
T ss_pred HHHHHHHHHHhhhccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc
Confidence 8999999999999999998776 8888777 889999999999998844 45666666766666666665322 1111
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHHHHHHHHhhhcchhhhhchhHH
Q 000345 1248 DEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPE 1327 (1630)
Q Consensus 1248 ~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 1327 (1630)
. ++. +..-.++-|. ++.++ .-...+.-++++.++-....+++++.+.++--+++
T Consensus 1272 ~-~g~------------~~~e~~~das-------~etl~------~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~e 1325 (1610)
T KOG1848|consen 1272 G-PGL------------PKEEKTIDAS-------LETLI------CLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLE 1325 (1610)
T ss_pred C-CCC------------chhhhcccch-------hhhhH------HhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHH
Confidence 0 000 0000000000 00000 00112333888888877777888888877766666
Q ss_pred HHHhhccccccc-CCCCCCcchHHHHHHHHHHHHHhhhhHhhh-----ccccccCChHHHHhhHHHHHHHhhhhhccCCC
Q 000345 1328 IIQNLGRCMTTR-RDNPDSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYCG 1401 (1630)
Q Consensus 1328 ii~~l~~~~~~k-~~~~~~~~Wk~at~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~~ 1401 (1630)
...-+.+++-+. +++|+.|+|.+|..||++..-.+....... ....+.+...+...+|++..|++++++.++|+
T Consensus 1326 v~~rlkr~~~t~~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd 1405 (1610)
T KOG1848|consen 1326 VPMRLKRRCPTASRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCD 1405 (1610)
T ss_pred HHHHHHHHcccccccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcc
Confidence 655555544444 888999999999999999887665443221 00001122244567899999999999999988
Q ss_pred -C--CCCCCCCchhhccccchhhchHHHHHhhhhccCCCCCCChHHhhhhHhhhhhccCCCCCCCccccccCccchhh--
Q 000345 1402 -R--ALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK-- 1476 (1630)
Q Consensus 1402 -~--~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~il~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~p~~r~r-- 1476 (1630)
+ +..+..++..... .+|..++++++.++|.++.+..|.|.+.++|+..++++++.| ++.++.+.+..|+|..|
T Consensus 1406 ~e~~~~ksl~l~a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~ 1483 (1610)
T KOG1848|consen 1406 FENSSLKSLHLLAKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFR 1483 (1610)
T ss_pred cccchhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHH
Confidence 3 2334455566777 899999999999999999999999999999999999999988 77777777777776666
Q ss_pred hHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHhhccc
Q 000345 1477 FSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKI 1556 (1630)
Q Consensus 1477 ~s~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yiaD~~l~G~~P~P~~r~~El~~vL~~l~~L~~ 1556 (1630)
.+|.||+.||+..... .+..|..+++++.|+|..||..+|++|++|+...|..|+|+.|..||+++|++|-.|..
T Consensus 1484 la~~Cf~~ll~ds~s~-----~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~ 1558 (1610)
T KOG1848|consen 1484 LAVDCFSILLDDSNSS-----YENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPS 1558 (1610)
T ss_pred HHHHHHHHHHHhcchh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 5666999999877531 23389999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheecchhHHHHHHHHH
Q 000345 1557 HPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL 1611 (1630)
Q Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~ 1611 (1630)
.. +.+|.+ .+..++.||..|+|.+|+.+++..+++....|++
T Consensus 1559 ~L------~~np~l-------~n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL 1600 (1610)
T KOG1848|consen 1559 LL------YSNPIL-------YNLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVL 1600 (1610)
T ss_pred cc------ccCchh-------hhHHHHHHHHhccHHHHhhhhhhhcccHHHHHHH
Confidence 72 222221 1267899999999999999977766665554433
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=5.3e-132 Score=1331.03 Aligned_cols=1057 Identities=21% Similarity=0.316 Sum_probs=794.2
Q ss_pred HHHHHHHHHHHH--HHHhhcChhHHHHHHHHHHHHhCCCCCC--------------cc--------------cCchHHHH
Q 000345 4 MAVLESDLRALS--AEARRRYPAVKDGAEHAILKLRSLSSPS--------------EL--------------AQSEDILR 53 (1630)
Q Consensus 4 ~~~L~~dL~~L~--~EskRK~~~lk~A~e~al~~Lk~~~~~~--------------~l--------------~~~~~~l~ 53 (1630)
-.++.+-|..++ .|. |||+++|+||+++++.||...... .+ .+++.++.
T Consensus 11 ~~~~~~ale~i~~~k~~-rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (1780)
T PLN03076 11 GKVVSPALEKIIKNASW-RKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILS 89 (1780)
T ss_pred hHHHHHHHHHHHhhHHh-hccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence 357788888888 444 789999999999999999765321 01 24667999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHccCCCC----------cchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCC
Q 000345 54 IFLMACEVRTVKLSVIGLSCIQKLISHDAVA----------PSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLH 123 (1630)
Q Consensus 54 Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~----------~~~l~~Il~~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~ 123 (1630)
||.+||+||++|++.+||+|||||++|++|+ ...++.+++++|+|.+.+||.|||||||+|+++++++.+
T Consensus 90 pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~ 169 (1780)
T PLN03076 90 PLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSL 169 (1780)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999992 146889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCC----------CCCCccccccc
Q 000345 124 PENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LPMGKFG----------SGAHITRTNSV 192 (1630)
Q Consensus 124 ~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~rv~~~~~-~~~~~~~----------~~~~~~~~~~~ 192 (1630)
.+||+.|.+++++||++|..||++ ++++||+|||+|||+.||+|++.... .+.++.. +......++.+
T Consensus 170 ~vhg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1780)
T PLN03076 170 RIHGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFV 248 (1780)
T ss_pred eeEHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccchhhhh
Confidence 999999999999999999999999 99999999999999999999964211 0000000 00000000000
Q ss_pred cCCcc------------------------cc---------cCCC---------ccccc---------ccccCCCc-----
Q 000345 193 TGDVS------------------------RS---------INHS---------ESLEH---------EFASEGPS----- 216 (1630)
Q Consensus 193 ~~~~~------------------------~~---------~~~~---------~~~~~---------~~~~~~~~----- 216 (1630)
++.++ .+ .+++ +.... ....+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1780)
T PLN03076 249 QGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELADG 328 (1780)
T ss_pred hhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccccccccccccccccccccc
Confidence 00000 00 0000 00000 00000000
Q ss_pred --ch--hh---hhhhhHHHHHHHHHHHHHhhcCCCCCcc--cccch-hhHhHHHHHHHHHHhCcccccCCHHHHHHHHHH
Q 000345 217 --LR--RE---TLTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQ 286 (1630)
Q Consensus 217 --~~--~~---~~~~~~~da~~vf~dLc~L~~~~~p~~l--~~~~~-~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~ 286 (1630)
+. .. ......+|||+||+.||+|+.++.|..- +.+.+ +|.+|||||.++|+++|++|.+||.|++++|++
T Consensus 329 ~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~ 408 (1780)
T PLN03076 329 EVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQY 408 (1780)
T ss_pred cccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHH
Confidence 00 00 0122579999999999999998766332 22455 999999999999999999999999999999999
Q ss_pred HH-HHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhcCC-C-cHHHHHHHHHHHHH
Q 000345 287 IC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLD-L-PLWHRILVLEILRG 362 (1630)
Q Consensus 287 lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~-~l~~~-~-~~w~r~l~LE~l~~ 362 (1630)
|| .|+..+.|+ ..++|. +++|||+.|+.+||.+||.|+|+||+.++. +++.. + +..||.++||+|.+
T Consensus 409 Lc~sL~~n~~S~--------~~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~ 479 (1780)
T PLN03076 409 LCLSLLKNSASS--------LMIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDK 479 (1780)
T ss_pred HHHHHHHHhcCC--------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 99 555333432 357885 899999999999999999999999998755 55653 3 46899999999999
Q ss_pred HhcChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccccc-----------------------------------c---
Q 000345 363 FCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-----------------------------------Q--- 404 (1630)
Q Consensus 363 l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~-----------------------------------~--- 404 (1630)
||+||+++++||.|||||.++.||||+|++.|+|+++..+. +
T Consensus 480 lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~ 559 (1780)
T PLN03076 480 LCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRL 559 (1780)
T ss_pred HHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999974210 0
Q ss_pred -cc-----ch--------------------------------------hh----------HHhhhccccCccc-cccccc
Q 000345 405 -ET-----SE--------------------------------------ES----------LSAVAGMFSSKAK-GIEWIL 429 (1630)
Q Consensus 405 -~~-----s~--------------------------------------~s----------l~~~~g~f~~k~k-Gi~~ll 429 (1630)
+. .+ +. +..+...||.||| ||+|+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~ 639 (1780)
T PLN03076 560 PDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLI 639 (1780)
T ss_pred CcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 00 00 00 0124567998875 998764
Q ss_pred cc-----cc------------------------------------------CCCc-----------ccCCcchhhHHHHH
Q 000345 430 DN-----DA------------------------------------------SNAA-----------VLVASEAHSITLAI 451 (1630)
Q Consensus 430 ~~-----d~------------------------------------------~~~~-----------~~l~~Ea~~I~~~~ 451 (1630)
.+ || .+.+ +.+|||+|+|+|+|
T Consensus 640 ~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRim 719 (1780)
T PLN03076 640 NANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIM 719 (1780)
T ss_pred HcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 31 11 0111 14899999999999
Q ss_pred HHHHHHHH------------------Hhhhc--------------------cccccCCCC-CCC-------------CC-
Q 000345 452 EGLLGVVF------------------TVATL--------------------TDEAVDVGE-LES-------------PR- 478 (1630)
Q Consensus 452 e~~a~~i~------------------sv~~l--------------------~d~~i~~g~-~~~-------------p~- 478 (1630)
|+|++.++ ++..| +.+|+|+|+ +|. |-
T Consensus 720 e~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~ 799 (1780)
T PLN03076 720 EKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIK 799 (1780)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCccc
Confidence 99997432 22222 223678774 331 00
Q ss_pred --CCCC--------C---------------CCc----------------------c---c------CcchHHHHHHHHHh
Q 000345 479 --CDYD--------P---------------LPK----------------------C---M------GETAVLCISMVDSL 502 (1630)
Q Consensus 479 --~e~~--------~---------------~~~----------------------~---~------~~~~~~~~~m~~~~ 502 (1630)
.|+. + +.+ . + ..+..++++||+.+
T Consensus 800 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~ 879 (1780)
T PLN03076 800 MKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVC 879 (1780)
T ss_pred CcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHH
Confidence 0000 0 000 0 0 01345789999999
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcc-CCcccccccccccCCCCCccc-
Q 000345 503 WLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIN-IPNESDRRSAVLQSPGSKRSE- 580 (1630)
Q Consensus 503 W~~iLaalS~~l~~s~De~~~~~lL~~fQ~~~~vaG~L~L~~~RDafl~~L~k~t~~-~~~~~~~~~~~~~s~~~~~~~- 580 (1630)
|+|+|||+|..|+.++|+++++.||+||+.++|+||.|||+++||+|+++|||||.. ++.+++.||... .+..
T Consensus 880 W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~A-----ik~ll 954 (1780)
T PLN03076 880 WAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDA-----IKAIV 954 (1780)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHH-----HHHHH
Confidence 999999999999999999999999999999999999999999999999999999994 666777666311 0111
Q ss_pred -cccccCCcccccchhHHHHHHHHHhhHh---hcC--CCC---------c---cccccccCccc----------------
Q 000345 581 -SLVDQKDNIVLTPKNVQVLETLAALDRA---IHS--PHA---------T---TQEVSTASSKL---------------- 626 (1630)
Q Consensus 581 -~~~~~~~~~~l~~rni~vL~tLq~~d~~---l~~--~~~---------~---~~~~~~~~~~~---------------- 626 (1630)
.+...|+.++-+|++| |+++.+++++ -.| |.. . .+......|..
T Consensus 955 ~ia~~~Gn~L~~sW~~I--L~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 1032 (1780)
T PLN03076 955 SIADEDGNYLQEAWEHI--LTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVR 1032 (1780)
T ss_pred HHHHHhhhHHHhHHHHH--HHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 2345678889999995 4555444432 111 110 0 00000000000
Q ss_pred --ccccc---------Cccchh-------hHHH----HHHHHHHhhccCCChHHHHHHHHHHHHhhHhhhcCCCCCCCCC
Q 000345 627 --ARESS---------GQYSDF-------NVLS----SLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPT 684 (1630)
Q Consensus 627 --~~~~~---------~~~~dl-------~~l~----~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~i~~~~~~~~~~ 684 (1630)
+.++. ...+++ +++. ...+++|++|++|+++||++|++|||++|.+|++.+.
T Consensus 1033 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~------ 1106 (1780)
T PLN03076 1033 RGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPS------ 1106 (1780)
T ss_pred ccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCC------
Confidence 00000 000111 1221 1248999999999999999999999999999987542
Q ss_pred CCCCCCCeeehHHHHHHHHHHhccc----chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhcccccccccccc
Q 000345 685 SSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQ 760 (1630)
Q Consensus 685 ~~~~~~~~~F~L~kL~eva~~N~~R----~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~ 760 (1630)
.||+|+|+||+||+++||+| |..+|+++++||+++|||+|..++.+|+|+|+|+++++++.+
T Consensus 1107 -----~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e--------- 1172 (1780)
T PLN03076 1107 -----DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE--------- 1172 (1780)
T ss_pred -----CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh---------
Confidence 47899999999999999999 789999999999999999999999999999999999999653
Q ss_pred CCCchhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHH
Q 000345 761 RGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLIT 840 (1630)
Q Consensus 761 ~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~ 840 (1630)
+..++.||+.||+||+.+|.++.+.+||++|++|+.+|++.++++|++||++||++|+.++.++++.+|+
T Consensus 1173 ----------EL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~ 1242 (1780)
T PLN03076 1173 ----------ELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVL 1242 (1780)
T ss_pred ----------hhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCC---hhhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCC
Q 000345 841 LGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCS 917 (1630)
Q Consensus 841 ~aF~~LqlI~~DfL~~Lp---~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~ 917 (1630)
.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+|+++||.|++++.+..... . .+...... ..
T Consensus 1243 lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~-~-~~~~~~~~-~~ 1319 (1780)
T PLN03076 1243 LAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS-S-SRNKDKEA-PP 1319 (1780)
T ss_pred HHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc-c-cccccccc-cc
Confidence 999999999999999776 699999999999999999999999999999999999998642110 0 00000000 00
Q ss_pred CcccCCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 000345 918 VPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL 997 (1630)
Q Consensus 918 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~ 997 (1630)
.....+....+ .. .......++.++|+|||.+|.+++.|+|+|||++|++|||+||.+||+.|++++|+.||
T Consensus 1320 ~~s~~~~~~~~-~~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if 1391 (1780)
T PLN03076 1320 SSPQSGKDGKQ-ES-------GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVF 1391 (1780)
T ss_pred ccccccccccc-cc-------cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 00000000000 00 00011223458999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhccccccch
Q 000345 998 WNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNF 1076 (1630)
Q Consensus 998 ~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F 1076 (1630)
|+||||||+.++........+++++.++++ .| .+.+.++|. ||+++||+|+++||.+||+.|..
T Consensus 1392 ~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~---- 1456 (1780)
T PLN03076 1392 ESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLVVDLFVKFYPTVNP---- 1456 (1780)
T ss_pred HHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999999997553332222122221111 11 245779996 99999999999999999987752
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcCC
Q 000345 1077 WTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKS 1138 (1630)
Q Consensus 1077 ~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 1138 (1630)
...++|+.+..|+++++..++..+.+||++++..++.+ |+++.|+.+++.+.+++..+
T Consensus 1457 --~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~--F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1457 --LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL--FSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHh
Confidence 66889999999999999999999999999999998876 56999999999999888754
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-94 Score=929.42 Aligned_cols=996 Identities=22% Similarity=0.340 Sum_probs=767.1
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCCc--------
Q 000345 14 LSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAP-------- 85 (1630)
Q Consensus 14 L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~~-------- 85 (1630)
|..-.+|+|+.++.+|+.+++++|+.. -.+...+.++.||.+||+||++|++..|++|+||||.|+.+..
T Consensus 11 ~~~~~~~~~s~l~~~~~~~~~~~~~~~--~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~ 88 (1514)
T KOG0929|consen 11 LADAEWRKHSKLKKACKSALEELKANG--LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGP 88 (1514)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhccc--CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCc
Confidence 334456799999999999999999832 3456788999999999999999999999999999999999853
Q ss_pred --chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHH
Q 000345 86 --SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVA 163 (1630)
Q Consensus 86 --~~l~~Il~~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~ 163 (1630)
..+..+++++|.|.+..+|.++|+++++|++.+++..+.+||+.|..++++||++|.+| + ++++||.+||.||+.
T Consensus 89 ~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~ 165 (1514)
T KOG0929|consen 89 EDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLN 165 (1514)
T ss_pred chhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHH
Confidence 24789999999999888999999999999999999888899999999999999999987 6 899999999999999
Q ss_pred HHHHhhhhhccCCCCCCC-C-----CCCcccccc--------------ccCCccc---ccCC-Ccc-c-----ccc---c
Q 000345 164 LIFDHVVRAESLPMGKFG-S-----GAHITRTNS--------------VTGDVSR---SINH-SES-L-----EHE---F 210 (1630)
Q Consensus 164 ~VF~rv~~~~~~~~~~~~-~-----~~~~~~~~~--------------~~~~~~~---~~~~-~~~-~-----~~~---~ 210 (1630)
.||.|+..+ ..++.+.. + ...+..+.. ...++.. ..++ .+. . ++. .
T Consensus 166 ~vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1514)
T KOG0929|consen 166 IVFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAES 244 (1514)
T ss_pred HHHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCcccc
Confidence 999999753 11100000 0 000000000 0000000 0000 000 0 000 0
Q ss_pred c---cCCCc-chhhhhhhhHHHHHHHHHHHHHhhcCCCCC---cccccch-hhHhHHHHHHHHHHhCcccccCCHHHHHH
Q 000345 211 A---SEGPS-LRRETLTKAGKLGLRLLEDLTALAAGGSAS---WLHVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQV 282 (1630)
Q Consensus 211 ~---~~~~~-~~~~~~~~~~~da~~vf~dLc~L~~~~~p~---~l~~~~~-~k~~~LeLIesiL~n~~~~F~~~~~l~~l 282 (1630)
. ...+. ..+.......+||++||+.||+|+.+..+. ..+.+ + +|+++||||.++|+|+|++|.++..|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~a 323 (1514)
T KOG0929|consen 245 PESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDA 323 (1514)
T ss_pred cccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHH
Confidence 0 00000 012223456799999999999999987663 23333 6 89999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cC-CCcHHHHHHHHHH
Q 000345 283 LRHQIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FL-DLPLWHRILVLEI 359 (1630)
Q Consensus 283 lr~~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~~l-~~-~~~~w~r~l~LE~ 359 (1630)
+|+++| .+. .|+.++. .++|. +.+-||+.|+.+|+.++|.|+|||++.++..+ +. ..+..||..+|.+
T Consensus 324 ikqyKOGals-----kn~vS~~---~~vfe-~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~ 394 (1514)
T KOG0929|consen 324 IKQYLCLALS-----KNSVSNV---PMVFE-LSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRI 394 (1514)
T ss_pred HHHHHHHHHh-----hcccccc---hHHHH-HHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHH
Confidence 999999 555 3433332 57784 89999999999999999999999999987765 43 2355788999999
Q ss_pred HHHHhcChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccc--------ccc-----------------------cc--
Q 000345 360 LRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------ET-- 406 (1630)
Q Consensus 360 l~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~--------~~~-----------------------~~-- 406 (1630)
+.++|.||+.++++|.||||+.+..|||+++++.+.+.+++. |.. +.
T Consensus 395 ~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~ 474 (1514)
T KOG0929|consen 395 LTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQL 474 (1514)
T ss_pred HhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999999761 110 00
Q ss_pred ------c---h---------hh---------------------HHhhhccccCcc-ccccccccc---------------
Q 000345 407 ------S---E---------ES---------------------LSAVAGMFSSKA-KGIEWILDN--------------- 431 (1630)
Q Consensus 407 ------s---~---------~s---------------------l~~~~g~f~~k~-kGi~~ll~~--------------- 431 (1630)
+ . .+ +..+...||.|+ +||+++...
T Consensus 475 ~~~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~ 554 (1514)
T KOG0929|consen 475 NVEGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLI 554 (1514)
T ss_pred cCCCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHH
Confidence 0 0 00 011334677776 488764321
Q ss_pred -----------------cc---------------CCCcc-----------cCCcchhhHHHHHHHHHHHH----------
Q 000345 432 -----------------DA---------------SNAAV-----------LVASEAHSITLAIEGLLGVV---------- 458 (1630)
Q Consensus 432 -----------------d~---------------~~~~~-----------~l~~Ea~~I~~~~e~~a~~i---------- 458 (1630)
|+ .++++ ++|||+|+|||+|++||+.+
T Consensus 555 ~t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFs 634 (1514)
T KOG0929|consen 555 GTEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFS 634 (1514)
T ss_pred hccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 00 12221 49999999999999999732
Q ss_pred ---------HHhhhc--------------------cccccCCCC-CCC-----------------------CCC-CC---
Q 000345 459 ---------FTVATL--------------------TDEAVDVGE-LES-----------------------PRC-DY--- 481 (1630)
Q Consensus 459 ---------~sv~~l--------------------~d~~i~~g~-~~~-----------------------p~~-e~--- 481 (1630)
|++..| +++|+|+|. +|. |.. +.
T Consensus 635 sADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~ 714 (1514)
T KOG0929|consen 635 SADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNL 714 (1514)
T ss_pred CccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcc
Confidence 233322 234788885 431 000 00
Q ss_pred ------CCC----------------C-----c----c-----cCcchHHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 000345 482 ------DPL----------------P-----K----C-----MGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILE 525 (1630)
Q Consensus 482 ------~~~----------------~-----~----~-----~~~~~~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~ 525 (1630)
.+. . + . +-.+..++++|++.+|.|.+|++|..+..++|......
T Consensus 715 ~~~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~ 794 (1514)
T KOG0929|consen 715 PKLLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANL 794 (1514)
T ss_pred hhhhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccc
Confidence 000 0 0 0 00256688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcc-CCcccccccccccCCCCCcc--ccccccCCcccccchhHHHHHHH
Q 000345 526 ILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIN-IPNESDRRSAVLQSPGSKRS--ESLVDQKDNIVLTPKNVQVLETL 602 (1630)
Q Consensus 526 lL~~fQ~~~~vaG~L~L~~~RDafl~~L~k~t~~-~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~l~~rni~vL~tL 602 (1630)
|++||+...|+++.++++..||||+++|.+||.. .+.+++.++... .+. ......++....+|.+ ++.++
T Consensus 795 cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~a-----ik~l~~ia~t~gn~l~~sW~~--Il~ci 867 (1514)
T KOG0929|consen 795 CLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDA-----IKALLEIADTDGNKLFDSWLD--ILKCI 867 (1514)
T ss_pred cccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHH-----HHHHHHHhhcccchhHhHHHH--HHHHH
Confidence 9999999999999999999999999999999994 445666665310 011 1122456677788888 45666
Q ss_pred HHhhHh-hcCCCCc----ccccc----ccCc--ccc------c-cccCccchhhHHHHHHHHHHhhccCCChHHHHHHHH
Q 000345 603 AALDRA-IHSPHAT----TQEVS----TASS--KLA------R-ESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLS 664 (1630)
Q Consensus 603 q~~d~~-l~~~~~~----~~~~~----~~~~--~~~------~-~~~~~~~dl~~l~~i~~~LFesS~~L~~~a~~~fv~ 664 (1630)
.++..+ +-+.... +...+ ...| ... + +..+.......+.++ +++|++|..++.+++++|++
T Consensus 868 sqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~Ift~S~~l~~eaIv~Fvk 946 (1514)
T KOG0929|consen 868 SQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DRIFTSSQRLDSEAIVDFVK 946 (1514)
T ss_pred HHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-hhhhcccccCCchHHHHHHH
Confidence 555543 1111110 00000 0001 000 0 001122244555667 79999999999999999999
Q ss_pred HHHHhhHhhhcCCCCCCCCCCCCCCCCeeehHHHHHHHHHHhccc----chhhHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000345 665 ALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDAL 740 (1630)
Q Consensus 665 ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R----~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L 740 (1630)
|||++|.+++..+. .|++|+++|++||+++||.| |..+|..+++||..|+++.|..+..+|+|+|
T Consensus 947 aLc~vs~~eL~s~~-----------~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~Dsl 1015 (1514)
T KOG0929|consen 947 ALCKVSMDELLSPS-----------TPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSL 1015 (1514)
T ss_pred HHHHHHHHHhcCCC-----------CCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhh
Confidence 99999999987642 47899999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCCh
Q 000345 741 DQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSW 820 (1630)
Q Consensus 741 ~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW 820 (1630)
+|+.++|++++ +..++.||++|++||+.++..+..++||++|++|+. +++++||
T Consensus 1016 RQlsmkfle~~-------------------el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGW 1069 (1514)
T KOG0929|consen 1016 RQLSMKFLERS-------------------ELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGW 1069 (1514)
T ss_pred HHhhhhhcchh-------------------hhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhh
Confidence 99999998763 466799999999999999999999999999999998 7899999
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCC-CCh--hhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHH
Q 000345 821 PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSS-IPT--DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIA 897 (1630)
Q Consensus 821 ~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~-Lp~--~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~ 897 (1630)
+.||.|++.++.+..+.+|..+|+.+.-|+.+++.. .|. ++|.+|+.|+.+|+.+....|+++.||.++|.|+.++.
T Consensus 1070 k~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~ 1149 (1514)
T KOG0929|consen 1070 KNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLA 1149 (1514)
T ss_pred hHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999876 454 89999999999999999999999999999999999998
Q ss_pred cccCCCchhhHhhhhcccCCCcccCCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 000345 898 KGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTL 977 (1630)
Q Consensus 898 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTL 977 (1630)
.+ . + . ++.. ++ ... ....|...|+|++.++..++.|.|++||+.|++.+
T Consensus 1150 e~-~-~-~-~~~~------------~~--------------~~~-~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1150 EG-V-Y-N-EKLK------------VG--------------KDS-EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred cc-c-c-h-hhcc------------cc--------------ccc-ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHH
Confidence 75 1 1 1 0100 00 000 12247789999999999999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHH
Q 000345 978 FQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVL 1056 (1630)
Q Consensus 978 fril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~-ET~vlaL 1056 (1630)
|.|+..||+.|+.++|+.+|. ++||+|+.++..... .+..+|. +|+++|+
T Consensus 1199 F~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~----------------------------~~~~eW~~tT~~~Al 1249 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDE----------------------------SEKDEWLSTTCNHAL 1249 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHH-heeecccccCcccch----------------------------hhhhHHHHHHHHHHH
Confidence 999999999999999999999 999999999643111 1224497 9999999
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 000345 1057 GGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1136 (1630)
Q Consensus 1057 ~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 1136 (1630)
+.++.||.+||+.+.. +...++..+..|+++++..++.++.+||.+++..++.+ ++++.|+.+++....+++
T Consensus 1250 ~~~v~lf~~~~~~l~~------lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~--fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1250 QALVDLFTQFFKQLNN------LLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEK--FSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccc--cCHhhHHHHHHHHHHHHH
Confidence 9999999999997762 56778899999999999999999999999999988765 568899988888877766
Q ss_pred CC
Q 000345 1137 KS 1138 (1630)
Q Consensus 1137 ~~ 1138 (1630)
.+
T Consensus 1322 ~T 1323 (1514)
T KOG0929|consen 1322 TT 1323 (1514)
T ss_pred hc
Confidence 43
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-66 Score=649.98 Aligned_cols=992 Identities=20% Similarity=0.264 Sum_probs=669.9
Q ss_pred HHHHHHHHHHHhCCCCC-Cc--ccCchHHHHHHHHHhcCC--CchhHHHHHHHHHHHHccCCCCcc------hHHHHHHH
Q 000345 26 KDGAEHAILKLRSLSSP-SE--LAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIFSM 94 (1630)
Q Consensus 26 k~A~e~al~~Lk~~~~~-~~--l~~~~~~l~Pfllac~sk--~~kl~~iAL~~lqkLi~~~~i~~~------~l~~Il~~ 94 (1630)
++..-.++..||..-+. .+ ..++..|++||+..++|. +|++|++||++++|++++++|+++ +++.++++
T Consensus 42 ~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~A 121 (1386)
T KOG0928|consen 42 SHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDA 121 (1386)
T ss_pred chHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHH
Confidence 44455555666544221 12 356779999999999986 799999999999999999999864 68999999
Q ss_pred HHhc----cC-CCCchHHHHHHHHHHHHHcCCCC-CCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHh
Q 000345 95 LKNH----AD-MVDESVQLKTLQTILIIFQSRLH-PENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDH 168 (1630)
Q Consensus 95 l~~~----~~-~~dE~vqLKILQ~L~~l~~s~~~-~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~r 168 (1630)
+++| ++ .+||.|.|||||+|.+++.++.. .++++.+++++++||++.+.++-.++++++|++||..|+..||.|
T Consensus 122 vthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsr 201 (1386)
T KOG0928|consen 122 VTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSR 201 (1386)
T ss_pred HHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHh
Confidence 9999 33 37999999999999999999754 458999999999999998855444599999999999999999999
Q ss_pred hhhhccCCC-------CC-CCC--CCCccccccc-cCCccc--c----cCCCcccccccccCC-----Cc--ch------
Q 000345 169 VVRAESLPM-------GK-FGS--GAHITRTNSV-TGDVSR--S----INHSESLEHEFASEG-----PS--LR------ 218 (1630)
Q Consensus 169 v~~~~~~~~-------~~-~~~--~~~~~~~~~~-~~~~~~--~----~~~~~~~~~~~~~~~-----~~--~~------ 218 (1630)
+++.++... +. .+. .+....+..+ .++.+. . ...+.....+..... +. +.
T Consensus 202 Lk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~ 281 (1386)
T KOG0928|consen 202 LKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAA 281 (1386)
T ss_pred CccccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhhc
Confidence 997652110 00 000 0000000000 000000 0 000000000000000 00 00
Q ss_pred --hhhhhhhHHHHHHHHHHHHHhhcCCCCCcccccchhhHhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHhhc
Q 000345 219 --RETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLR 296 (1630)
Q Consensus 219 --~~~~~~~~~da~~vf~dLc~L~~~~~p~~l~~~~~~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls 296 (1630)
..+.-|. .-..|.-||.+++..++ ...++..+.|+|.||++.++-.|+.|+.||.|..++++.++..++.++-
T Consensus 282 ~~~~ygip~---~~~~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~ 356 (1386)
T KOG0928|consen 282 MDENYGIPV---MKDIFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQ 356 (1386)
T ss_pred ccccCCCce---eccchhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHh
Confidence 0111122 23457779999888665 4456779999999999999999999999999999999999977777662
Q ss_pred cccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHhcChHHHHHH
Q 000345 297 TNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLRLL 373 (1630)
Q Consensus 297 ~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~~l---~~~~~~w~r~l~LE~l~~l~~dp~ll~~i 373 (1630)
..+..+ -.+.+.++.+.++..+...++.+++.+.|.||+.+..+. +...|..+|+++||.+-.+|+.|.|+.++
T Consensus 357 ~~~k~s---~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~ 433 (1386)
T KOG0928|consen 357 IPTKMS---LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEM 433 (1386)
T ss_pred hcccch---hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHH
Confidence 211000 124444555666667777788999999999999988876 22336678899999999999999999999
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhc-------c--ccc-----------------c--ccch------hh---------
Q 000345 374 FQNFDMNPKNTNVVEGMVKALARVVS-------S--VQF-----------------Q--ETSE------ES--------- 410 (1630)
Q Consensus 374 y~nYD~~~~~~nI~~~li~~L~~~~~-------~--~~~-----------------~--~~s~------~s--------- 410 (1630)
|.||||+.++.|||+++++.|+|.+- + ++. + +..+ +.
T Consensus 434 yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~rk 513 (1386)
T KOG0928|consen 434 YVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRSRK 513 (1386)
T ss_pred HHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhccch
Confidence 99999999999999999999999651 1 110 0 0000 00
Q ss_pred ----HHhhhccccCcc-ccccccccc-------ccC----------------------------------------CCc-
Q 000345 411 ----LSAVAGMFSSKA-KGIEWILDN-------DAS----------------------------------------NAA- 437 (1630)
Q Consensus 411 ----l~~~~g~f~~k~-kGi~~ll~~-------d~~----------------------------------------~~~- 437 (1630)
+.-++..||.+| |||+|+..+ ||. ++.
T Consensus 514 ~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmrl 593 (1386)
T KOG0928|consen 514 RKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMRL 593 (1386)
T ss_pred hhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCcH
Confidence 112577899987 599876321 210 111
Q ss_pred ----------ccCCcchhhHHHHHHHHHHHHH-----------------Hhh--hc-cc-------------------cc
Q 000345 438 ----------VLVASEAHSITLAIEGLLGVVF-----------------TVA--TL-TD-------------------EA 468 (1630)
Q Consensus 438 ----------~~l~~Ea~~I~~~~e~~a~~i~-----------------sv~--~l-~d-------------------~~ 468 (1630)
+++|||+|+|.|++|.|++.++ +++ .| || +|
T Consensus 594 DeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg 673 (1386)
T KOG0928|consen 594 DEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRG 673 (1386)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhccc
Confidence 2499999999999999997432 222 22 33 37
Q ss_pred cCCCC-CCC-----------------CCCCCCCCCcc--------------cC------cchHHHHHHHHHhhHHHHHHH
Q 000345 469 VDVGE-LES-----------------PRCDYDPLPKC--------------MG------ETAVLCISMVDSLWLTILDAL 510 (1630)
Q Consensus 469 i~~g~-~~~-----------------p~~e~~~~~~~--------------~~------~~~~~~~~m~~~~W~~iLaal 510 (1630)
+|+|+ +|. |. ++.+..+. +. ....++++||..+|+|+.||+
T Consensus 674 ~n~g~DFpreyLseiY~SIk~~EIvmPe-e~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaal 752 (1386)
T KOG0928|consen 674 INGGKDFPREYLSEIYQSIKTNEIVMPE-EHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAAL 752 (1386)
T ss_pred ccCCCCCCHHHHHHHHHHHhhcceeccc-ccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHH
Confidence 88885 321 11 22221110 00 134578999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcc-CCcc-cccccccccCCCCC-ccc------c
Q 000345 511 SLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIN-IPNE-SDRRSAVLQSPGSK-RSE------S 581 (1630)
Q Consensus 511 S~~l~~s~De~~~~~lL~~fQ~~~~vaG~L~L~~~RDafl~~L~k~t~~-~~~~-~~~~~~~~~s~~~~-~~~------~ 581 (1630)
+++|+.+.++++++.|+.||++++.++..+|+.++.|..+..|||||.. +|.. .+... ...+...+ +.. .
T Consensus 753 s~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~-~~fged~ka~~At~tvf~~ 831 (1386)
T KOG0928|consen 753 SYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELV-LAFGEDTKARMATLTVFFG 831 (1386)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHH-HHhcccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995 3321 11110 00111111 110 1
Q ss_pred ccccCCcccccchhHH-HHHHHHHh---h-Hh----hcCCCC-cccccccc-----Ccc--cccc------------c--
Q 000345 582 LVDQKDNIVLTPKNVQ-VLETLAAL---D-RA----IHSPHA-TTQEVSTA-----SSK--LARE------------S-- 630 (1630)
Q Consensus 582 ~~~~~~~~~l~~rni~-vL~tLq~~---d-~~----l~~~~~-~~~~~~~~-----~~~--~~~~------------~-- 630 (1630)
....|+.++-+||||. ++-.|.++ + .+ ...+.. ..+..+.+ .++ .+++ .
T Consensus 832 ~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~ 911 (1386)
T KOG0928|consen 832 ANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEE 911 (1386)
T ss_pred hhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccchHHHHHHHhcCCcccc
Confidence 2356778899999964 22222221 1 00 011100 00000000 000 0000 0
Q ss_pred ---cCccchh-------hHHH--HHHHHHHhhccCCChHHHHHHHHHHHHhhHhhhcCCCCCCCCCCCCCCCCeeehHHH
Q 000345 631 ---SGQYSDF-------NVLS--SLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVER 698 (1630)
Q Consensus 631 ---~~~~~dl-------~~l~--~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~L~k 698 (1630)
.....++ ..++ .+ +++|+.|+.+..+++.+++++|...+... +..++.+..|+++.
T Consensus 912 ~~~~Ptee~l~~~~~a~~cIk~c~i-~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-----------s~~de~s~~F~lEl 979 (1386)
T KOG0928|consen 912 ERPCPTEEELSASKKALECIKECHI-DQIFTKSKFLQAKSLLTLLKSLIAASNDL-----------SMEDEESAVFCLEL 979 (1386)
T ss_pred cCCCCcHHHHhhhHHHhhHHHhcCH-HHHhhhcccccHHHHHHHHHHHHHhcCCc-----------cCcccchHHHHHHH
Confidence 0011122 1121 34 57999999999999999999999887653 11234567899999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhh
Q 000345 699 MISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLR 775 (1630)
Q Consensus 699 L~eva~~N~~R~~~iW~~l~~hli~v~~~~---n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~ 775 (1630)
|+.|.+.|.+|+..+|..+.+|+..++..+ ...+.+.|+-.+.+++.+.+..+.|- . +....
T Consensus 980 li~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l---------~------d~l~~ 1044 (1386)
T KOG0928|consen 980 LIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFL---------S------DELLD 1044 (1386)
T ss_pred HHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhh---------h------HHHhh
Confidence 999999999999999999999999887664 56789999999999998877543211 0 11123
Q ss_pred HHHHHHhccHHHHhccC--CcHHHHHHHHHHHHHHHHccCCCc--CCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHh
Q 000345 776 SIECAVISPLRVLYFST--QSTDVRAGTLKILLHVLERCGEKL--HYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 851 (1630)
Q Consensus 776 ~lq~~~l~pl~~L~~~~--~~~eVr~~iL~~L~~iL~~~g~~L--~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~ 851 (1630)
+++ .++.-. ..-..-+++-..+.+++..+..+. +.||.++|..|..++. ++..-..+|..+--.+.
T Consensus 1045 sl~--------~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a~~~~~~~~l~~m~ 1114 (1386)
T KOG0928|consen 1045 SLR--------ILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HPEADFLKFYRLLSKMS 1114 (1386)
T ss_pred hHH--------HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CCchhHHHHHHHHHHhh
Confidence 444 322211 122555677777788888777666 5899999999999887 55555556665555555
Q ss_pred ccCCCCChhhHHHHHHHHHHHHhccC-CcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhh
Q 000345 852 DGLSSIPTDCIHECVDVTGAYSSQKT-ELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEK 930 (1630)
Q Consensus 852 DfL~~Lp~~~~~~lV~~L~~F~~q~~-dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~ 930 (1630)
|-.+ ++++.|..||+|...|+.... ...-++...+..-.-+-.+.+ +....|.. . -++
T Consensus 1115 e~~h-l~~~~fe~~v~~~~~fve~~~~~~~~~l~~lde~s~sg~~~~k----w~~~~~~~-~---------~~~------ 1173 (1386)
T KOG0928|consen 1115 EASH-LTPDNFELYVDCGSTFVEARVGQIMRSLSLLDEMSSSGEVLDK----WEIEAKNA-T---------ESG------ 1173 (1386)
T ss_pred cccc-CChHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchhH----HHHHHhhh-h---------ccc------
Confidence 6655 667889999999999997741 111111111111000000000 00000000 0 000
Q ss_pred hhccccccCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhh
Q 000345 931 TLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASH 1010 (1630)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~ 1010 (1630)
+...........+|+++++.+.++|.|.|.+|||.|++.++|++.+-++.|.+..|..||..|+||+++.+.+
T Consensus 1174 -------~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~ 1246 (1386)
T KOG0928|consen 1174 -------DESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLE 1246 (1386)
T ss_pred -------ccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHH
Confidence 0000011123459999999999999999999999999999999888999999999999999999999999975
Q ss_pred hhccCCcccccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHH
Q 000345 1011 MAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNS 1090 (1630)
Q Consensus 1011 ~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~ 1090 (1630)
.....+. . ++ .+.+|.+++.+.++++|.+++..+.+.+.|..+|..+|++++++
T Consensus 1247 ~l~~~~~-------~---------------~~----~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l 1300 (1386)
T KOG0928|consen 1247 LLSDASE-------K---------------GN----EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKL 1300 (1386)
T ss_pred Hhccccc-------c---------------cc----hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5322110 0 11 36799999999999999999999999999999999999999999
Q ss_pred HhCCc-----hHHHHHHHHHHHHHHhhhcCCCC
Q 000345 1091 ILNGS-----KEVSLAAINCLQTTVLSHSTKGN 1118 (1630)
Q Consensus 1091 ~~~~~-----~els~a~~~~L~~lL~~~~~~~~ 1118 (1630)
+..+. .-+..++.+.+++++..+...+-
T Consensus 1301 ~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei 1333 (1386)
T KOG0928|consen 1301 MRGKTSEETSDKLNEIVPELLKNMLLVMKLQEI 1333 (1386)
T ss_pred hhcccccchhhhHHhhhhhhhhhhhhhhhcccc
Confidence 97654 35899999999999999876553
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.95 E-value=6e-28 Score=261.65 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHHHhh-----cCCCCCcccccchhhHhHHHHHHHHHHhCccccc---CCHHHHHHHHHHHHHHHHHhh
Q 000345 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1630)
Q Consensus 224 ~~~~da~~vf~dLc~L~-----~~~~p~~l~~~~~~k~~~LeLIesiL~n~~~~F~---~~~~l~~llr~~lc~lLi~~l 295 (1630)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. .||+|.+++|+++|+.+++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 5666888888888999999999999999999999 666999999999999998888
Q ss_pred ccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhcCCC-cHHHHHHHHHHHHHHhcChHHHHHH
Q 000345 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1630)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~-~l~~~~-~~w~r~l~LE~l~~l~~dp~ll~~i 373 (1630)
.++ +.+.| .+++|++++++.+|+++||.|+|+|++.+++ ++++++ |.|||+++||+++++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 652 24555 4799999999999999999999999999988 667765 6799999999999999999999999
Q ss_pred HHhcCCCCCCccHH
Q 000345 374 FQNFDMNPKNTNVV 387 (1630)
Q Consensus 374 y~nYD~~~~~~nI~ 387 (1630)
|.||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999986
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=216.41 Aligned_cols=711 Identities=17% Similarity=0.153 Sum_probs=450.0
Q ss_pred cccch-hhHhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 000345 249 HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSS 327 (1630)
Q Consensus 249 ~~~~~-~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~ 327 (1630)
+...+ ++..+|+++.++|..+. .|..+++.+.|-.+- .++-++ ..|+|. ..+.+++..+..+..
T Consensus 21 ~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~----~~a~s~---~~~v~~-v~~~i~~~~~~~~~~ 85 (1024)
T COG5307 21 PSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLS----LSARSP---LLPVFE-VGLEIIGLRLSNLPK 85 (1024)
T ss_pred hhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhh----hccccc---chhhhh-hhHHHHHHHHhhhhh
Confidence 34455 88899999988887665 888999999994442 222111 256774 689999999999999
Q ss_pred hHHHHHHHHHHHHHHhh-cCCC-cHHHHHHHHHHHHHHhcChHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhccccc-
Q 000345 328 SLITECEVFLSMLVKVT-FLDL-PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQF- 403 (1630)
Q Consensus 328 ~Lk~E~EvfLs~l~~~l-~~~~-~~w~r~l~LE~l~~l~~dp~ll~~iy~nYD~~~~-~~nI~~~li~~L~~~~~~~~~- 403 (1630)
..+.|.++|+..++..+ +..+ +.-|+.+-|-..+++|..|+ ++.|.+|||... ..|+.++....+.+.++..|.
T Consensus 86 ~f~~~~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~ 163 (1024)
T COG5307 86 LFKLESSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPE 163 (1024)
T ss_pred hhhhccchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCc
Confidence 99999999988776654 5444 45677888999999999999 899999999987 788887777777655533110
Q ss_pred ---------------------------c---------------------------------ccchhh-------------
Q 000345 404 ---------------------------Q---------------------------------ETSEES------------- 410 (1630)
Q Consensus 404 ---------------------------~---------------------------------~~s~~s------------- 410 (1630)
+ ..+.|+
T Consensus 164 ~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~ 243 (1024)
T COG5307 164 TRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMK 243 (1024)
T ss_pred chhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCccccccc
Confidence 0 000000
Q ss_pred ---------------HH------------hhhccccCcc-ccccccccc-------------------------------
Q 000345 411 ---------------LS------------AVAGMFSSKA-KGIEWILDN------------------------------- 431 (1630)
Q Consensus 411 ---------------l~------------~~~g~f~~k~-kGi~~ll~~------------------------------- 431 (1630)
.+ -.+..||.|+ +|+..+.+.
T Consensus 244 ~~~~d~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L 323 (1024)
T COG5307 244 NSSRDSSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYL 323 (1024)
T ss_pred ccccChhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHh
Confidence 00 0123455554 366433211
Q ss_pred --c----------------cCCCcc-----------cCCcchhhHHHHHHHHHHHH-------------------HHhhh
Q 000345 432 --D----------------ASNAAV-----------LVASEAHSITLAIEGLLGVV-------------------FTVAT 463 (1630)
Q Consensus 432 --d----------------~~~~~~-----------~l~~Ea~~I~~~~e~~a~~i-------------------~sv~~ 463 (1630)
| ..++++ .+|||+|+|+|++|+|+..+ |++..
T Consensus 324 ~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlim 403 (1024)
T COG5307 324 GTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIM 403 (1024)
T ss_pred cCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHH
Confidence 0 012221 38999999999999999632 22222
Q ss_pred c-ccc-------------------ccCCCC-CCC-------------CC---CCCCCCC-----------------cccC
Q 000345 464 L-TDE-------------------AVDVGE-LES-------------PR---CDYDPLP-----------------KCMG 489 (1630)
Q Consensus 464 l-~d~-------------------~i~~g~-~~~-------------p~---~e~~~~~-----------------~~~~ 489 (1630)
| ||. |.|.|+ ++. |- .++.... ...+
T Consensus 404 LNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~ 483 (1024)
T COG5307 404 LNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFG 483 (1024)
T ss_pred HhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhcc
Confidence 2 222 455553 210 00 0000000 0000
Q ss_pred cc--hHHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhccCCcc-ccc
Q 000345 490 ET--AVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDR 566 (1630)
Q Consensus 490 ~~--~~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~lL~~fQ~~~~vaG~L~L~~~RDafl~~L~k~t~~~~~~-~~~ 566 (1630)
+. ...-+.+|+..|+-+++++...+++..++-+....+.+++++..+|..|+++.|||+|+.++++++.....+ .+.
T Consensus 484 rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~ 563 (1024)
T COG5307 484 RDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEG 563 (1024)
T ss_pred cccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccc
Confidence 11 112235666666666666666666666666666778888888889999999999999999999999853322 000
Q ss_pred ccccccCCCCC-ccccccccCCc------------------------------ccccchhHHHHHHHHHh-hHhhcCCCC
Q 000345 567 RSAVLQSPGSK-RSESLVDQKDN------------------------------IVLTPKNVQVLETLAAL-DRAIHSPHA 614 (1630)
Q Consensus 567 ~~~~~~s~~~~-~~~~~~~~~~~------------------------------~~l~~rni~vL~tLq~~-d~~l~~~~~ 614 (1630)
.... +.+ ..+..+...+. ..-.|+++. ...+.-. ...+..+..
T Consensus 564 ~~~~----~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~-~~~~~~~~~~l~~~~~~ 638 (1024)
T COG5307 564 PYLF----IPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIE-NKSLKLYLSSLIEDGKH 638 (1024)
T ss_pred cccc----CccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhh-hhHhhhhhhhhcCCCcc
Confidence 0000 000 00000000000 000111110 0000000 000000000
Q ss_pred ccccccccCccccccccCccchhhHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHhhHhhhcCCCCCCCCCCCCCCCCee
Q 000345 615 TTQEVSTASSKLARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSIS 693 (1630)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~dl~~l~~i~~~LFesS~~L~~-~a~~~fv~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~ 693 (1630)
..|...+. ... +-+....++++...+.++. .++.++++|++.... ..|
T Consensus 639 -------~~~~~~~~--~~~---~~~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----------------~~~-- 687 (1024)
T COG5307 639 -------FSPSIVKK--LGS---PELPKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----------------PSP-- 687 (1024)
T ss_pred -------cccccccc--ccC---ccccccCcccccccccccccchHHHHHHHHHhccC-----------------CCC--
Confidence 00000000 000 1111122577888888888 899999999998211 012
Q ss_pred ehHHHHHHHHHHhcccc---hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhc
Q 000345 694 FSVERMISILVNNLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESR 770 (1630)
Q Consensus 694 F~L~kL~eva~~N~~R~---~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~ 770 (1630)
++++.+++.+.||.++ ..+|..+....-.+..+.+..+..++.+..+++.+.+.+.+
T Consensus 688 -~~q~~v~~s~~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie------------------- 747 (1024)
T COG5307 688 -PLQKEVDISKKNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE------------------- 747 (1024)
T ss_pred -CcHHhhhHHhhhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChh-------------------
Confidence 7899999999999985 56899999999999999999999999999999988776442
Q ss_pred cchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 000345 771 HGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM 850 (1630)
Q Consensus 771 ~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~ 850 (1630)
+.....|+..++.|+.........+.|++..+.|.+.++++..+.+.+| +++|+++...... .. ++..++.+..
T Consensus 748 e~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~--~~-~~~~~s~~~~-- 821 (1024)
T COG5307 748 ELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLS--ST-LRYILSSLSN-- 821 (1024)
T ss_pred hhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeeccccc--ch-hhhHHHHhcc--
Confidence 2445788889999999887777788999999999999999999999999 9999998765431 11 4444444432
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhh
Q 000345 851 NDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEK 930 (1630)
Q Consensus 851 ~DfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~ 930 (1630)
.|. -.-+.++|...+-+-......+.++-+.+.++.++..+..+.... . . .. +.
T Consensus 822 ~e~-v~s~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k---~--~~-------------------~~ 875 (1024)
T COG5307 822 DEL-VLSQENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-K---N--LS-------------------SV 875 (1024)
T ss_pred hhh-hhChhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-H---H--HH-------------------HH
Confidence 122 223457888888888888888888888888888876655444431 0 0 00 00
Q ss_pred hhccccccCCCCCcchhhhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhh
Q 000345 931 TLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCAS 1009 (1630)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~-D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~ 1009 (1630)
. ..+.. ..+.|++.+.++.++.. -.-.|+ |..+..+++.+..++|+.+.+.-++|++....
T Consensus 876 ~---------~~~~~-~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~ 937 (1024)
T COG5307 876 L---------SANSN-FSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGAS 937 (1024)
T ss_pred H---------Hhhhh-hhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccc
Confidence 0 00111 25789999999998873 455666 99999999999999999999999999988664
Q ss_pred hhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHH
Q 000345 1010 HMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVK 1088 (1630)
Q Consensus 1010 ~~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~ 1088 (1630)
-.... +. ++ -++...-.|. .+.+.++...+.+|...|+.+.. ..| .+.+..
T Consensus 938 ~~~~~---------~~---------~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~ 989 (1024)
T COG5307 938 GPNSD---------KT---------NL---DNDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLH 989 (1024)
T ss_pred cCccc---------cc---------cc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHH
Confidence 21111 10 00 1234456787 88889999999999999987752 234 345555
Q ss_pred HHHhCCchHHHHHHHHHHHHHHh
Q 000345 1089 NSILNGSKEVSLAAINCLQTTVL 1111 (1630)
Q Consensus 1089 ~~~~~~~~els~a~~~~L~~lL~ 1111 (1630)
.| .+...++...+++++++.+-
T Consensus 990 ~c-~~~~~~~~~~~~~~~~~~~~ 1011 (1024)
T COG5307 990 QC-LNNCDQLGLGAIETLEEILW 1011 (1024)
T ss_pred hh-cCcHhhhhhhhHHHHhhhhH
Confidence 66 34445677788888877653
No 7
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.54 E-value=4.1e-15 Score=141.67 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=75.4
Q ss_pred cchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 000345 771 HGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 849 (1630)
Q Consensus 771 ~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI 849 (1630)
+..++.||++||+||+.+|.++++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++|+.||+++++|
T Consensus 8 El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 8 ELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred cccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 4667899999999999999999999999999999999999999999999999999999999988999999999999976
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.3e-08 Score=122.35 Aligned_cols=439 Identities=15% Similarity=0.202 Sum_probs=257.9
Q ss_pred HHHHHHHHHhh-ccCCChHHHHHHHHHHHHhhHhhhcCCCC--------CCCCCCCCCCCCeeehHHHHHHHH---HHhc
Q 000345 640 LSSLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSS--------SFGPTSSQKIGSISFSVERMISIL---VNNL 707 (1630)
Q Consensus 640 l~~i~~~LFes-S~~L~~~a~~~fv~ALc~lS~e~i~~~~~--------~~~~~~~~~~~~~~F~L~kL~eva---~~N~ 707 (1630)
+.+-.+|+|+. +..|.--|+.+|.-|+.+.|...+-.+-. ..|.--+.+.+...--|.||.+-. +.-.
T Consensus 846 LiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhk 925 (1777)
T KOG1846|consen 846 LIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHK 925 (1777)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 33334899996 66889999999999999998765432110 000000001111123455666622 1122
Q ss_pred cc----chhhHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHh
Q 000345 708 HR----VEPLWDQVVGHFLEL-ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVI 782 (1630)
Q Consensus 708 ~R----~~~iW~~l~~hli~v-~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l 782 (1630)
.| ...+|+.+..||+++ +|+....+...|+..+..++.+.|.. . ++-..+.|-..++
T Consensus 926 aRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtd-----w-------------nEpPgfhFNeaLf 987 (1777)
T KOG1846|consen 926 ARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTD-----W-------------NEPPGFHFNEALF 987 (1777)
T ss_pred ccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhc-----c-------------CCCCCcchhHhhh
Confidence 24 367899999999999 77778888888988888888877632 1 1223456777888
Q ss_pred ccHHHHhcc-CCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccch----hH---------HHHHHHHHHH
Q 000345 783 SPLRVLYFS-TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEK----DL---------ITLGFQSLRF 848 (1630)
Q Consensus 783 ~pl~~L~~~-~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~----~l---------v~~aF~~Lql 848 (1630)
+||+..+.. +++-|++++.|..+.++++.+++.+++||+.+|+.|.++...+.. .+ ---+|++++-
T Consensus 988 gPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfea 1067 (1777)
T KOG1846|consen 988 GPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEA 1067 (1777)
T ss_pred chHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHH
Confidence 999988654 678899999999999999999999999999999999998752211 11 2256777664
Q ss_pred HHh-ccCCCCChhhHHHHHHHHHHHHhccC-----------------CcchhhhHHHHHHHHHHHHHccc--CCCchhhH
Q 000345 849 IMN-DGLSSIPTDCIHECVDVTGAYSSQKT-----------------ELNISLTAVGLLWTTTDFIAKGL--VHGISEEK 908 (1630)
Q Consensus 849 I~~-DfL~~Lp~~~~~~lV~~L~~F~~q~~-----------------dlNISLtAi~llW~isD~L~~~~--~~~~~~~k 908 (1630)
-.+ |..+.+ .+....||-|+.+|...-. .....|.|+.++-+|+..+.+-. .+++. -
T Consensus 1068 fLniDnipVf-anaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPi--f 1144 (1777)
T KOG1846|consen 1068 FLNIDNIPVF-ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPI--F 1144 (1777)
T ss_pred HhccCchHhH-HHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchh--h
Confidence 332 322222 3668899999999998654 23567899999999998876531 11100 0
Q ss_pred hhhh-cccC---CCcccCCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhc
Q 000345 909 EAAN-QDLC---SVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSH 984 (1630)
Q Consensus 909 ~~~~-~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~ 984 (1630)
..+- .+.. .....++..-.|.--..+|-. .........-++|..++..+.......-|.-..--+..+|+.|..-
T Consensus 1145 hlghladLprkcldqsamdeDgIEsphgpfpvl-edfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDi 1223 (1777)
T KOG1846|consen 1145 HLGHLADLPRKCLDQSAMDEDGIESPHGPFPVL-EDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDI 1223 (1777)
T ss_pred hhhhhhcchHHHHhhhhcccCCccCCCCCcccc-ccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHh
Confidence 0000 0000 000000000000000000000 0000111234789999888876666655666666788888888753
Q ss_pred c-CCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH---HHHHHHHHHHH
Q 000345 985 G-QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD---ETLVLVLGGIA 1060 (1630)
Q Consensus 985 g-~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~---ET~vlaL~gl~ 1060 (1630)
. .-|.+.+=-.|+.-+|+|.+..-.... +.+..-|+ .-...+++.-+
T Consensus 1224 skkPlGadfGgvamsaliLPvmqkWiRRl-----------------------------dkdesywdmakaifKhaIGacc 1274 (1777)
T KOG1846|consen 1224 SKKPLGADFGGVAMSALILPVMQKWIRRL-----------------------------DKDESYWDMAKAIFKHAIGACC 1274 (1777)
T ss_pred ccCCCCCCCccchhhHHHHHHHHHHHHHh-----------------------------chhhhhHHHHHHHHHHHHhHHH
Confidence 3 223333344677788888887654211 11124465 23466777778
Q ss_pred HHHHhhhhccccccchHH--------HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHH
Q 000345 1061 RLLRSFFPFLANLSNFWT--------GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYE 1132 (1630)
Q Consensus 1061 ~lf~~~~~~L~~~~~F~~--------~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~ 1132 (1630)
.+...+.+.... +++.. +-...+.+...|....-..+..++-+|..-+|... .+.|+++.|+.+.....
T Consensus 1275 elVidhielekh-SswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvta--gpkFseemWniaccaLa 1351 (1777)
T KOG1846|consen 1275 ELVIDHIELEKH-SSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTA--GPKFSEEMWNIACCALA 1351 (1777)
T ss_pred HHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeecc--CccccHHHHHHHHHHHH
Confidence 888777764432 22221 11222233333333333345555555655554332 34578899987765444
No 9
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.76 E-value=0.00029 Score=99.04 Aligned_cols=532 Identities=14% Similarity=0.141 Sum_probs=267.8
Q ss_pred hhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH-HhHHHHHHHhhhhhccCCcccccccc
Q 000345 946 DRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLW-NYVFPMLDCASHMAATSSKDEWQGKE 1024 (1630)
Q Consensus 946 ~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~-~VLFPll~~l~~~~~~~s~~~~~~~~ 1024 (1630)
.|..+|-.+-.-+..++.++-.+||--|+..|=++-..+-.. .+.++.=|. +.|-|+..-+.+.
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s------------- 1194 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKS------------- 1194 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhc-------------
Confidence 488899878777888877767899999999875554433321 111222222 4455555434211
Q ss_pred cccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 000345 1025 LGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAIN 1104 (1630)
Q Consensus 1025 ~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~ 1104 (1630)
.+. |.+-++++.+.++...+.+.+. ..|..++..|...+..+...+...||+
T Consensus 1195 ----------------~~~------eVrE~ILeCv~qmI~s~~~nIk------SGWktIF~VLs~aa~d~~e~iV~lAFe 1246 (1780)
T PLN03076 1195 ----------------NAV------EIRELIIRCVSQMVLSRVNNVK------SGWKSMFMVFTTAAYDDHKNIVLLAFE 1246 (1780)
T ss_pred ----------------Cch------HHHHHHHHHHHHHHHHHHhhhh------cCcHHHHHHHHHHHhCccHHHHHHHHH
Confidence 111 4555788888888888777665 389999999998888888889999999
Q ss_pred HHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhcCCCCCCCCCCcchhH--HHHH-HHHHHHHHH-----H----------
Q 000345 1105 CLQTTVLSHST-KGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQ--EILH-GLGELYVQA-----Q---------- 1165 (1630)
Q Consensus 1105 ~L~~lL~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~q--~~l~-~f~~ly~~~-----~---------- 1165 (1630)
.++.++..... ....+.+....+++...+....... .+...+ +++. +-..+.+.. .
T Consensus 1247 tl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-----~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~ 1321 (1780)
T PLN03076 1247 IIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-----KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSS 1321 (1780)
T ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-----ccccHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 99887754321 0001122333333333222211000 000000 0011 101111000 0
Q ss_pred -----------hh-CCH-HHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhc-cccCCCc-c-chhhHHHHH
Q 000345 1166 -----------KM-FDD-RMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEIL-PLLSPTE-Q-LCSMWLVLL 1229 (1630)
Q Consensus 1166 -----------~~-~~~-~~~~~~l~il~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l-~~i~~~~-~-~~~~~~~~~ 1229 (1630)
.. .+. +...=++-+|..+..... +.=..+++..++.| +.+..-- . -+..|-.++
T Consensus 1322 s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~----------D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if 1391 (1780)
T PLN03076 1322 PQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF----------DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVF 1391 (1780)
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 00 001 111223334444333211 11233455555443 2221110 1 234666666
Q ss_pred HHHH----ccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhH
Q 000345 1230 REIL----QYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKL 1305 (1630)
Q Consensus 1230 ~~l~----~f~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1305 (1630)
.+++ +.+.....+...++...+ ++.......+.-.|. .. ..-.+
T Consensus 1392 ~~VLFPIFd~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~Wl----------~e---T~~~A 1439 (1780)
T PLN03076 1392 ESVLFPIFDYVRHAIDPSGGDEPEGQ-------------------GVDGDQGELDQDAWL----------YE---TCTLA 1439 (1780)
T ss_pred HHHHHHHHHHHHHhhccccccccccc-------------------cccccccchhhhhHH----------HH---HHHHH
Confidence 6543 111110001000000000 000000001111121 11 23344
Q ss_pred HHHHHHHhhhcchhhhhchhHHHHHhhcccccccCCCCCCcchHHHHHHHHHHHHHhhhhHhhhccccccCChHHHHhhH
Q 000345 1306 IPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVW 1385 (1630)
Q Consensus 1306 ~~~~~~l~~~~p~~~~~~~~~~ii~~l~~~~~~k~~~~~~~~Wk~at~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W 1385 (1630)
+.-+++||-+.=....+ .+++++.-|.-|+..- ..++=|..++|+.+++....+. ++ +.-|
T Consensus 1440 L~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~----------F~----~~~W 1500 (1780)
T PLN03076 1440 LQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHL----------FS----DEKW 1500 (1780)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhcc----------CC----HHHH
Confidence 45556666664233334 5588888888887754 7888899999988888755333 22 3459
Q ss_pred HHHHHHhhhhhccCC-CC-CCCC-CCCchhhccccch--------------------hh------chH-HHH-----Hhh
Q 000345 1386 KEVADVYEIFLVGYC-GR-ALPS-NSLSAVALSGADE--------------------SL------EMS-ILD-----ILG 1430 (1630)
Q Consensus 1386 ~~v~~~~~~~l~~~~-~~-~~~~-~~~~~~~~~~~dE--------------------~~------d~~-~~~-----~l~ 1430 (1630)
..|++.+....-... +. ..|. .+.+.+...+.+. .| -|. ++. .+.
T Consensus 1501 ~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~ 1580 (1780)
T PLN03076 1501 LEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVM 1580 (1780)
T ss_pred HHHHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999887654421 00 0000 0000000000000 00 010 111 111
Q ss_pred hhccCCCCCCChHHhhhhHhhhhhcc---C-------------CCCCCCccccccCccchhhhHHH-HHHHHhhhhcCCC
Q 000345 1431 DKILKSPIDAPFDVLQRLISTIDRCA---S-------------RTCSLPVETVELMPAHCSKFSLA-CLHKLFSLSSSDN 1493 (1630)
Q Consensus 1431 ~~il~~~~~~p~~~~~~l~~l~~~~~---~-------------r~~~~~~~t~~~~p~~r~r~s~~-c~d~Lf~l~s~~~ 1493 (1630)
++.=.+...+|..-+.+|.++|...- . |-|... +-.+|.-.+-|.=||. |+..||.+-...+
T Consensus 1581 ~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~-~~~~PnLLkqE~~s~~~~l~il~~~~~d~~ 1659 (1780)
T PLN03076 1581 EIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMT-QMQDPPLLRLENESYQICLTFLQNLILDKP 1659 (1780)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcc-cCCCCchhhHhHHHHHHHHHHHHHHhcCCC
Confidence 11001235677766667666654211 0 222110 0112344445667777 7999999987432
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------ccCCCCCChhHHHH-------HHHHHHHHhhc
Q 000345 1494 EASKWNLTRAEVSKISITVLMGRCEYILNRFLIDEN------------DLGERNFPAARLEE-------IIFILQELARL 1554 (1630)
Q Consensus 1494 ~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yiaD~~------------l~G~~P~P~~r~~E-------l~~vL~~l~~L 1554 (1630)
.. ..+.. +--.|+.=|+.+|+.|+.=.. -+-.+|+-..+++| +..||+++.+|
T Consensus 1660 ~~----~~~~~----~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l 1731 (1780)
T PLN03076 1660 PL----AKEAE----VESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGL 1731 (1780)
T ss_pred cc----chHHH----HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcC
Confidence 11 12222 445688889999999964211 01134655667777 56777777544
Q ss_pred ccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheec--chhHHHHHHHHHHH-HHhhh
Q 000345 1555 KIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS--REARVRELVQVLLR-LITKE 1618 (1630)
Q Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~--~~~~v~~ll~~~l~-~v~~e 1618 (1630)
-. .+.++|+-.+||++|+++.+ ...+|+.+|+.+|. .||-.
T Consensus 1732 ~~-----------------------~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~ 1775 (1780)
T PLN03076 1732 GD-----------------------SSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPV 1775 (1780)
T ss_pred CH-----------------------HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhh
Confidence 22 34699999999999999965 45899999999999 78863
No 10
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.4e-06 Score=113.44 Aligned_cols=470 Identities=16% Similarity=0.115 Sum_probs=289.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhcCCC----------C-------------------------
Q 000345 1074 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG----------N------------------------- 1118 (1630)
Q Consensus 1074 ~~F~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~----------~------------------------- 1118 (1630)
.+|.++|..-|+++..-...++.+|..||-++++.+........ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 45667899999999999999999999999999998865432110 0
Q ss_pred -------C---------ChHHHHHHHHHHHHhhcCCCCCC---C----CCCcchhHHHHHHHHHHHHHHHhhCCH--HHH
Q 000345 1119 -------L---------PVAYLNSVLDVYEYALQKSPNYS---D----NAAGKVKQEILHGLGELYVQAQKMFDD--RMY 1173 (1630)
Q Consensus 1119 -------~---------~~~~~~~~~~~w~~~~~~~~~~~---~----~~~~~~~q~~l~~f~~ly~~~~~~~~~--~~~ 1173 (1630)
+ ....|..+|.-|.++--..+.|- . ...+.+..-++.||+-+|++.+.-++. ..+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 1 12566677777764422111111 0 112334456677999999865555553 455
Q ss_pred HHHHHHHHHHHHcccCCCCCCccccC-----CCCHHHHHHHHhccccCCC-----ccchhhHHHHHHHHHccCCCCCCCC
Q 000345 1174 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSPT-----EQLCSMWLVLLREILQYLPRSDSPL 1243 (1630)
Q Consensus 1174 ~~~l~il~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~~-----~~~~~~~~~~~~~l~~f~~~~~~~~ 1243 (1630)
+++. +..|-+.|+. .+.++.-.+ +.++.|.+.+..+.-+..+ ..++.|+|....+++.|++..+.++
T Consensus 169 rQlV--~~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLV--LLVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHH--HHHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 5543 3344444432 221222111 2344444444433322211 1356677788888888886655443
Q ss_pred CCCCCCCCCCCCCCCcccccc--ccccCCCCCCCCCCcchhhhhhhccCCcccccchHH-HHHhHHHHHHHHhhh---cc
Q 000345 1244 QKKEDEEEPPSTSDNIHDVHV--RTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1317 (1630)
Q Consensus 1244 ~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1317 (1630)
..+-- ...+. +.++.-++.+. +.+++ ..+++ |.+.+....|+++.. .+
T Consensus 246 ~~elL-----------esilks~~s~~dq~qdf~--~a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLELL-----------ESILKSNASKSDQIQDFA--PAELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhhhh-----------hhhhhcchhhhHHHHHhh--HHHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 22110 00110 00000000000 00000 01222 556666566664443 46
Q ss_pred hhhhhchhHHHHHhhcc-------cccccCCCCCCcchHHHHHHHHHHHHHhhhhHhhhccccccCChHHHHhhHHHHHH
Q 000345 1318 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1390 (1630)
Q Consensus 1318 ~~~~~~~~~~ii~~l~~-------~~~~k~~~~~~~~Wk~at~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1390 (1630)
.+.+...+-.+|+.+.. |-..+|-|+..-.|+++....+.+...++|...--.. --.+..+|.+..-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~------~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLAS------LLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHH------HhhhhhcCcccCc
Confidence 66666666667776666 9999999999999999999999999999987544321 1346677777777
Q ss_pred HhhhhhccCCCCCCCCCCCchhhccccchhhchHHHHHhhhhccCCCCCCChHHhh----hhHhhhhhccCCCCCCCccc
Q 000345 1391 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1466 (1630)
Q Consensus 1391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~il~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1466 (1630)
-+..|.+... .++.+.++-.+. +.+.++....+.+-..++|..+-++..++. .+...++.++.--|......
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 7777887763 233545555555 566777789999999999988888876654 55666666554333222111
Q ss_pred cccCccchhhhHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHH
Q 000345 1467 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1546 (1630)
Q Consensus 1467 ~~~~p~~r~r~s~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yiaD~~l~G~~P~P~~r~~El~~ 1546 (1630)
-+.--..|+.+...|+..|-++..... ...++.-...+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111122357788889999977766322 22345666789999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhh
Q 000345 1547 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCE 1595 (1630)
Q Consensus 1547 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~ 1595 (1630)
+- .+..++.-. ..+|+..+...+...+.+++-.||.+..
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlts 565 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLTS 565 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHHh
Confidence 65 333333111 1123334446677789999999999984
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.41 E-value=66 Score=41.56 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=101.6
Q ss_pred eehHHHHHHHHHHhccc-chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhcc
Q 000345 693 SFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRH 771 (1630)
Q Consensus 693 ~F~L~kL~eva~~N~~R-~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~ 771 (1630)
.|.+.|++-++...+.. .....-.+++++..=..|+|+.+|..|...|..+....+
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~----------------------- 111 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM----------------------- 111 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch-----------------------
Confidence 67888999888777665 567899999999999999999999999999988754221
Q ss_pred chhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHH-H
Q 000345 772 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI-M 850 (1630)
Q Consensus 772 ~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI-~ 850 (1630)
.+ .+..++..+. .+.++.||+..+-|+.++.+.+.+.+..+| +..+.....+.++.++..|...+.-| +
T Consensus 112 -----~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 181 (526)
T PF01602_consen 112 -----AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIKC 181 (526)
T ss_dssp -----HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred -----hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence 11 2334444453 356789999999999999999888776554 45554444566778888888888877 3
Q ss_pred hccCCCCChhhHHHHHHHHHHHH
Q 000345 851 NDGLSSIPTDCIHECVDVTGAYS 873 (1630)
Q Consensus 851 ~DfL~~Lp~~~~~~lV~~L~~F~ 873 (1630)
++-... +.+..++..|.+..
T Consensus 182 ~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 182 NDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp THHHHT---THHHHHHHHHHHHH
T ss_pred Ccchhh---hhHHHHHHHhhhcc
Confidence 332100 33445555555443
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=90.38 E-value=81 Score=42.60 Aligned_cols=285 Identities=13% Similarity=0.111 Sum_probs=144.6
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccC--CCCcc-hH
Q 000345 12 RALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD--AVAPS-AL 88 (1630)
Q Consensus 12 ~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~--~i~~~-~l 88 (1630)
++|..+.+-+||-+|-.|=+++..++.. .-.+.++.|+.-++..+++.+-..|.-|+.|+.... .++.. -+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~ 181 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFK 181 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchH
Confidence 4445666677888888877777666542 113456677777888899999999999999986532 22222 22
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHh
Q 000345 89 KEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDH 168 (1630)
Q Consensus 89 ~~Il~~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~r 168 (1630)
+.+.+.| +-.+-.|+---+.+|..+-......+ .-....+.++|..|-. -++ -.+- .+-+++ .+
T Consensus 182 ~~L~~LL----~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e--~~E-W~Qi----~IL~lL----~~ 245 (746)
T PTZ00429 182 KDLVELL----NDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE--CNE-WGQL----YILELL----AA 245 (746)
T ss_pred HHHHHHh----cCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc--CCh-HHHH----HHHHHH----Hh
Confidence 2222221 12333455555555555543211111 0011111222322211 111 1111 111111 11
Q ss_pred hhhhccCCCCCCCCCCCccccccccCCcccccCCCcccccccccCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 000345 169 VVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAGGSASWL 248 (1630)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~dLc~L~~~~~p~~l 248 (1630)
.. | ....++..++..+......
T Consensus 246 y~-----P-----------------------------------------------~~~~e~~~il~~l~~~Lq~------ 267 (746)
T PTZ00429 246 QR-----P-----------------------------------------------SDKESAETLLTRVLPRMSH------ 267 (746)
T ss_pred cC-----C-----------------------------------------------CCcHHHHHHHHHHHHHhcC------
Confidence 00 0 0012345555555543322
Q ss_pred cccchhhHhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 000345 249 HVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSS 328 (1630)
Q Consensus 249 ~~~~~~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~ 328 (1630)
.+-...|+-+..++.-.... .+++...+=.++-+.++.++++ .+...-.++|-+..++..+-..
T Consensus 268 ----~N~AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~ss---------~~eiqyvaLr~I~~i~~~~P~l 331 (746)
T PTZ00429 268 ----QNPAVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLSRR---------DAETQYIVCKNIHALLVIFPNL 331 (746)
T ss_pred ----CCHHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhhCC---------CccHHHHHHHHHHHHHHHCHHH
Confidence 12345566666665443322 3555544444555444455432 2333224788778888888777
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCh---HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcc
Q 000345 329 LITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEA---RTLRLLFQNFDMNPKNTNVVEGMVKALARVVSS 400 (1630)
Q Consensus 329 Lk~E~EvfLs~l~~~l~~~~~~w~r~l~LE~l~~l~~dp---~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~ 400 (1630)
+..++.+|+-. .+-|.+.|...||++-.++.+- .++.++.. |=.+. ...+-...|.++++++..
T Consensus 332 f~~~~~~Ff~~------~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~-D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 332 LRTNLDSFYVR------YSDPPFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGV-DMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHhhhcc------cCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcC-CHHHHHHHHHHHHHHHHh
Confidence 77766665522 2236678999999999998764 34444432 32222 234666666666666644
No 13
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.33 E-value=2.4e+02 Score=39.22 Aligned_cols=332 Identities=15% Similarity=0.135 Sum_probs=177.2
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHh
Q 000345 710 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 789 (1630)
Q Consensus 710 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~ 789 (1630)
...+-+.+...+. +.+.|..++..++..|..+..+ + |...+. ....++. +.. +.. +
T Consensus 91 Fs~~~~~l~~~~~--~~stn~svlr~~iscL~~lLra-------Q-----------d~~aW~-~~~t~~~-~~~-il~-~ 146 (1176)
T KOG1248|consen 91 FSDTLNILAPFLT--AESTNGSVLRLAISCLEDLLRA-------Q-----------DASAWS-YSSTKTE-LFG-ILA-F 146 (1176)
T ss_pred HHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHH-------c-----------chhhhc-cccHHHH-HHH-HHH-H
Confidence 3455555555555 6678999999999999998763 1 111111 0011111 110 011 1
Q ss_pred ccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000345 790 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 869 (1630)
Q Consensus 790 ~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L 869 (1630)
.-...+-||...+++++.+|....--. ...|+..+..|+.||++|-.-.. +.+
T Consensus 147 ~~h~~pkvRk~a~~~i~~VL~~p~~~~---------------~~~HpA~~~vak~cl~~~e~~~~---~a~--------- 199 (1176)
T KOG1248|consen 147 AAHKKPKVRKAAQRGIAAVLKGPPFAP---------------DAEHPASLSVAKFCLALIESKLG---SAE--------- 199 (1176)
T ss_pred HhcCchHHHHHHHHHHHHHHcCCCCCc---------------cccchHHHHHHHHHHHHHHhhhc---hHH---------
Confidence 223456999999999999987643221 12388999999999999876543 111
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhhhhccccccCCCCCcchhhh
Q 000345 870 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 949 (1630)
Q Consensus 870 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 949 (1630)
| -+-.-.|-.+-|-+.. ++ ..
T Consensus 200 ----------~--t~v~~~L~Ll~~~~~~----~p-------------------------------------------~~ 220 (1176)
T KOG1248|consen 200 ----------N--TTVLRSLMLLRDVLST----FP-------------------------------------------RP 220 (1176)
T ss_pred ----------H--HHHHHHHHHHHHhhcc----CC-------------------------------------------HH
Confidence 1 1111122222222221 00 01
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCC
Q 000345 950 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 1029 (1630)
Q Consensus 950 LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~ 1029 (1630)
+.-++=..+.++.+-.-..|+-.+.|+|.+.+..|-..++.+.--. +|..+... .++.
T Consensus 221 li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~--------lL~al~~l-~ps~------------- 278 (1176)
T KOG1248|consen 221 LIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNAR--------LLTALMTL-SPSE------------- 278 (1176)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHH--------HHHHHHHh-CCCc-------------
Confidence 1111223334445667789999999999999999988777654432 22333211 0110
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 000345 1030 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 1109 (1630)
Q Consensus 1030 ~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~l 1109 (1630)
.+..-...|.. ++.+.-..|...-. .-.| +.-.+++..+.++..+...++..++..|+.++
T Consensus 279 ----------~D~~~t~~W~~----v~~~~~~~la~~q~----~~~~-~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~i 339 (1176)
T KOG1248|consen 279 ----------NDDLLTVAWLK----VLNEAHDILATLQE----EKAL-QALPRLFSLFFTILESLIEELVQAASQSLKEI 339 (1176)
T ss_pred ----------cchHHHHHHHH----HHHHHHHHHHHhCH----HHHH-HhhhhhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 01122245542 22222222322221 1112 23456777888888899999999999999999
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccC
Q 000345 1110 VLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMI 1189 (1630)
Q Consensus 1110 L~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~~~~ 1189 (1630)
+..... +.+..-...++... . |+ -..+.-++++.+-.+|..-....+.+ +.+.|..+... +
T Consensus 340 l~~sv~---~~~~~c~~~~~~~l---~----~k---f~~~~~~ilqi~s~~fek~G~~s~~~-l~~~L~~l~~l-r---- 400 (1176)
T KOG1248|consen 340 LKESVT---VIDALCSKQLHSLL---D----YK---FHAVWRFILQILSALFEKCGELSGPE-LTKTLEGLCDL-R---- 400 (1176)
T ss_pred hcccCc---ccHHHHHHHHHHHH---c----ch---HHHHHHHHHHHHHHHHHHhhhhcCHH-HHHHHHHHHHh-h----
Confidence 866443 11222222122221 1 11 11345677777788887544444443 34444443321 1
Q ss_pred CCCCCccccCCCCHHHHHHHHhcccc
Q 000345 1190 THDNYEIEFGHVPPVLRTILEILPLL 1215 (1630)
Q Consensus 1190 ~~~~~~~d~~~~s~lQ~~vl~~l~~i 1215 (1630)
+.+|......++..|-.++..+
T Consensus 401 ----~~~d~~~~~~ld~~IGSAV~Am 422 (1176)
T KOG1248|consen 401 ----ASPDFFHKLQLDQCIGSAVRAM 422 (1176)
T ss_pred ----cCCCCccHHHHHHHHHHHHHhh
Confidence 3334445557888887776655
No 14
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=80.20 E-value=1.4e+02 Score=37.98 Aligned_cols=278 Identities=13% Similarity=0.125 Sum_probs=142.0
Q ss_pred hhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHh
Q 000345 711 EPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 789 (1630)
Q Consensus 711 ~~iW~~l~~hli~v~~~~-n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~ 789 (1630)
..+=+.+++-+..++.|| |+.+--|.-+++.-++...-+. + ......||..++-||..+.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~--------------~-----~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA--------------D-----PEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG--------------G-----HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC--------------C-----hhHHHHHHHHHHHHHHHHH
Confidence 444556667777788887 8999999999998887743211 0 1223478888888888776
Q ss_pred ccCCcHHHHHHHHHHHHHHHHccC-CCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHH
Q 000345 790 FSTQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDV 868 (1630)
Q Consensus 790 ~~~~~~eVr~~iL~~L~~iL~~~g-~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~ 868 (1630)
..+ -.|.--.+++.+..+++.+. ..+......+|..|-+..- -.- ..+++.++..
T Consensus 127 q~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l----------------------We~-~gniPalvrL 182 (435)
T PF03378_consen 127 QQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL----------------------WER-RGNIPALVRL 182 (435)
T ss_dssp HTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG----------------------GGS-TTTHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch----------------------hcc-CCCcCcHHHH
Confidence 542 23777778888888888877 5555555555555544321 111 2346667777
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhhhhccccccCCCCCcchhh
Q 000345 869 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 948 (1630)
Q Consensus 869 L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 948 (1630)
|.+|.+.....-.+-.-+.-++++-..|-.. +.. + ..+.. .-+.....++. ..+. .-..
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s---k~~-D-~~gF~------------LL~~iv~~~p~---~~l~-~yl~ 241 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIAS---KAN-D-HYGFD------------LLESIVENLPP---EALE-PYLK 241 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT----TTC-H-HHHHH------------HHHHHHHHS-H---HHHG-GGHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCC---CCc-c-hHHHH------------HHHHHHHHCCH---HHHH-HHHH
Confidence 7777666533322223334444554544432 111 0 00000 00001100000 0000 0134
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccc
Q 000345 949 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1020 (1630)
Q Consensus 949 ~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g--------~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~ 1020 (1630)
.+|..+|.+|.+- .-..-+++=+..+.-....|| +...+..|..++.+++.|-+.++...
T Consensus 242 ~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------- 309 (435)
T PF03378_consen 242 QIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------- 309 (435)
T ss_dssp HHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH---------
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc---------
Confidence 6788888888652 222333333333333333444 23445678888888888866655211
Q ss_pred cccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCch
Q 000345 1021 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSK 1096 (1630)
Q Consensus 1021 ~~~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~ 1096 (1630)
.| +.++.=|++++...- +.+.. ...+.|..+++-+-+++.....
T Consensus 310 ----------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~~ 353 (435)
T PF03378_consen 310 ----------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPPE 353 (435)
T ss_dssp ----------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTST
T ss_pred ----------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCcc
Confidence 02 335666778877542 22211 1456899999988888875443
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.15 E-value=81 Score=35.87 Aligned_cols=176 Identities=15% Similarity=0.200 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHh--cccchhhHHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhh
Q 000345 695 SVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVES 769 (1630)
Q Consensus 695 ~L~kL~eva~~N--~~R~~~iW~~l~---~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~ 769 (1630)
.+++|..++..| ......+++.+. .-++....+.+..+...|...+..++... +. .|+
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~-~~~--------------- 89 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS-HFE--------------- 89 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG-GGH---------------
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH-hHH---------------
Confidence 566777777777 233566676666 33334444447888899999998887642 11 011
Q ss_pred ccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 000345 770 RHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 849 (1630)
Q Consensus 770 ~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI 849 (1630)
..++ .++.++... .+....-|++..-+||..|++.++ .+=++++.++......+++.+-..+.+.+..+
T Consensus 90 -----~~~~-~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 90 -----PYAD-ILLPPLLKK-LGDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp -----HHHH-HHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred -----HHHH-HHHHHHHHH-HccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1122 344444444 234456899999999999999876 11155688888888777777777888888888
Q ss_pred HhccC---CCCCh-hhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHcc
Q 000345 850 MNDGL---SSIPT-DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKG 899 (1630)
Q Consensus 850 ~~DfL---~~Lp~-~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~ 899 (1630)
+..+- ..+.. ..+..++.++.++..-. +..+--.|-..||.+......+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence 87665 22322 23678899998888665 7888888999999987776643
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=73.11 E-value=2.8e+02 Score=35.70 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=145.5
Q ss_pred cChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCCcchHHHHHHHHHhccC
Q 000345 21 RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHAD 100 (1630)
Q Consensus 21 K~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~~~~l~~Il~~l~~~~~ 100 (1630)
++..+|.-+=-++..+-...+ + ...-....+.--+.++|..+.+.||.+|-++. .++.++.++..+..+..
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~--~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDP--E--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSH--H--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcch--h--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhc
Confidence 566777777777777665422 1 12236677777888899999999999999976 45555666666666543
Q ss_pred CCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHH----------HHHHHHhhh
Q 000345 101 MVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQA----------VALIFDHVV 170 (1630)
Q Consensus 101 ~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Ql----------v~~VF~rv~ 170 (1630)
.....|.=|-+-++..++..+...+... .+..+.++. ..+++ .|...|-..+.++ +..++.++.
T Consensus 125 ~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l~~lL-~d~~~-~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~ 198 (526)
T PF01602_consen 125 DPSPYVRKKAALALLKIYRKDPDLVEDE----LIPKLKQLL-SDKDP-SVVSAALSLLSEIKCNDDSYKSLIPKLIRILC 198 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCHCCHHGG----HHHHHHHHT-THSSH-HHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCHHHHHHH----HHHHHhhhc-cCCcc-hhHHHHHHHHHHHccCcchhhhhHHHHHHHhh
Confidence 3445788888888888887643332222 244455553 45667 7777777777766 222333322
Q ss_pred hhccCCCCCCCCCCCccccccccCCcccccCCCcccccccccCCCcchhhhhhhhHHHH--HHHHHHHHHhhcCCCCCcc
Q 000345 171 RAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLG--LRLLEDLTALAAGGSASWL 248 (1630)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da--~~vf~dLc~L~~~~~p~~l 248 (1630)
..-..+ ++ ..+... +. .. .........+. ..++..+..+..
T Consensus 199 ~~l~~~-------~~-----~~q~~i---------l~--~l-------~~~~~~~~~~~~~~~~i~~l~~~l~------- 241 (526)
T PF01602_consen 199 QLLSDP-------DP-----WLQIKI---------LR--LL-------RRYAPMEPEDADKNRIIEPLLNLLQ------- 241 (526)
T ss_dssp HHHTCC-------SH-----HHHHHH---------HH--HH-------TTSTSSSHHHHHHHHHHHHHHHHHH-------
T ss_pred hccccc-------ch-----HHHHHH---------HH--HH-------HhcccCChhhhhHHHHHHHHHHHhh-------
Confidence 100000 00 000000 00 00 00000000111 334444443332
Q ss_pred cccchhhHhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 000345 249 HVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSS 328 (1630)
Q Consensus 249 ~~~~~~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~ 328 (1630)
+......+|.+..++.-. .+++ +...+++.|.+.++++ .++..-.+++.+..+...+...
T Consensus 242 ---s~~~~V~~e~~~~i~~l~-----~~~~----~~~~~~~~L~~lL~s~--------~~nvr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 242 ---SSSPSVVYEAIRLIIKLS-----PSPE----LLQKAINPLIKLLSSS--------DPNVRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHS-----SSHH----HHHHHHHHHHHHHTSS--------SHHHHHHHHHHHHHHCCHCHHH
T ss_pred ---ccccHHHHHHHHHHHHhh-----cchH----HHHhhHHHHHHHhhcc--------cchhehhHHHHHHHhhcccchh
Confidence 345566677777777322 2233 5555665566777641 3333224677666666666333
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCh
Q 000345 329 LITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEA 367 (1630)
Q Consensus 329 Lk~E~EvfLs~l~~~l~~~~~~w~r~l~LE~l~~l~~dp 367 (1630)
+. .....+..+..+.+..-|..+|+++..++...
T Consensus 302 v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 302 VF-----NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred hh-----hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 32 23334445555667789999999999998654
No 17
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.40 E-value=64 Score=41.28 Aligned_cols=139 Identities=14% Similarity=0.182 Sum_probs=80.4
Q ss_pred ccCCChHHHHHHHHHHHHhhHhhhcCCCCCCCCCCCCCCCCeeehHHHHHHHHHHhcccchhhHHHHHHHHHHHhc--C-
Q 000345 651 SALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELAD--N- 727 (1630)
Q Consensus 651 S~~L~~~a~~~fv~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R~~~iW~~l~~hli~v~~--~- 727 (1630)
...+|++++..+|..||.. .... .+.+-.==++.|+-| ...+......+..+.. +
T Consensus 207 y~~iP~~sl~~~i~vLCsi-~~~~--------------------~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSI-VNSV--------------------SLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDP 264 (464)
T ss_pred cCcCChHHHHHHHHHHhhH-hccc--------------------ccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCc
Confidence 5789999999999999976 2110 011111114556665 3345566677777772 2
Q ss_pred ---CChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHH
Q 000345 728 ---SNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKI 804 (1630)
Q Consensus 728 ---~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~ 804 (1630)
++..+--=|+..|+.++.+. +.+++ . ....... .++..|...+. ..+.-|--.|+..
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~-~~~~~---~--------------~l~~~~~-~vl~sl~~al~-~~~~~v~~eIl~~ 324 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGS-GEQGY---P--------------SLPFSPS-SVLPSLLNALK-SNSPRVDYEILLL 324 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhcc-ccCCc---c--------------eecccHH-HHHHHHHHHHh-CCCCeehHHHHHH
Confidence 24455556777777776532 00000 0 0011111 23333343333 2334455677888
Q ss_pred HHHHH-HccCCCc-CCChHHHHHHHhhhh
Q 000345 805 LLHVL-ERCGEKL-HYSWPSILELLRSVA 831 (1630)
Q Consensus 805 L~~iL-~~~g~~L-~sgW~~If~iL~~~~ 831 (1630)
+..++ ..+|..+ ...|..+++|+..+.
T Consensus 325 i~~ll~~~~~~~l~~~~W~~~~~i~~~~~ 353 (464)
T PF11864_consen 325 INRLLDGKYGRELSEEDWDIILDIIEEIF 353 (464)
T ss_pred HHHHHhHhhhhhhcccCchHHHHHHHHHH
Confidence 88888 8888876 589999999998754
No 18
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.79 E-value=7.3 Score=29.70 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000345 955 FSLLKKLGADERPEVRNSAIRTLFQTLG 982 (1630)
Q Consensus 955 L~~L~~L~~D~R~EVRn~AiqTLfril~ 982 (1630)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999987764
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=69.85 E-value=4.1e+02 Score=36.17 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCC--C
Q 000345 6 VLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--V 83 (1630)
Q Consensus 6 ~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~--i 83 (1630)
.+...++..+ +-++|-||.+|=-++.+|=... .++.....++.-+......+++-++..|+.++..+-..+- +
T Consensus 140 ~l~~~lkk~L---~D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 140 YTLEPLRRAV---ADPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 3444444444 3478999998877777764322 2332222333333344567899999999999999976541 1
Q ss_pred --CcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHH---
Q 000345 84 --APSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATF--- 158 (1630)
Q Consensus 84 --~~~~l~~Il~~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL--- 158 (1630)
....+..+++.+.+| +|=-|+.||++|.. |. +-..+....++.......++ +|+.||-.++.+-+
T Consensus 215 ~l~~~~~~~Ll~~L~e~----~EW~Qi~IL~lL~~----y~-P~~~~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPEC----NEWGQLYILELLAA----QR-PSDKESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhc
Confidence 122233444444444 45679999998843 21 11222234444444443333 44547777776533
Q ss_pred ----HHHHHHHHHhhh
Q 000345 159 ----RQAVALIFDHVV 170 (1630)
Q Consensus 159 ----~Qlv~~VF~rv~ 170 (1630)
.+++..++.|+.
T Consensus 285 ~~~~~~~~~~~~~rl~ 300 (746)
T PTZ00429 285 SRCSQELIERCTVRVN 300 (746)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 245555555554
No 20
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.66 E-value=69 Score=37.71 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHccCCCcC-CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q 000345 795 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 872 (1630)
Q Consensus 795 ~eVr~~iL~~L~~iL~~~g~~L~-sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L~~F 872 (1630)
...|..+++.+..+++++.+.++ .|=..|..++..+.++++|.-+-.+|+.++.|+..|- + .+...++-|++..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 37899999999999999887774 5667888999999889999999999999999998874 3 44456666666555
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.83 E-value=96 Score=35.24 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=66.3
Q ss_pred hhHhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHH
Q 000345 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1630)
Q Consensus 254 ~k~~~LeLIesiL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~ 333 (1630)
.|.=||+-|..++..+ .--...+.+...+| .+...+.+.++.. +.......+.++..+...++..+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 6777888888888888 22234577888888 4444444555431 233334678889999999999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhcChH
Q 000345 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1630)
Q Consensus 334 EvfLs~l~~~l~~~~~~w~r~l~LE~l~~l~~dp~ 368 (1630)
+.++..|++.+...+ .+.|.-+.+++..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC
Confidence 999999999886543 4677777777777765443
No 22
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=4.1 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.2
Q ss_pred ccCCcchhhHHHHHHHHHHHHH
Q 000345 438 VLVASEAHSITLAIEGLLGVVF 459 (1630)
Q Consensus 438 ~~l~~Ea~~I~~~~e~~a~~i~ 459 (1630)
+++|||+|+|+|+||.||..++
T Consensus 151 FRLPGEaQKIdRmmEaFA~rYc 172 (395)
T KOG0930|consen 151 FRLPGEAQKIDRMMEAFAQRYC 172 (395)
T ss_pred hcCCchHHHHHHHHHHHHHHHh
Confidence 3599999999999999998654
No 23
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.73 E-value=1.1e+02 Score=39.84 Aligned_cols=109 Identities=12% Similarity=0.168 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccch
Q 000345 964 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1043 (1630)
Q Consensus 964 D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~vhhsr~~ 1043 (1630)
-+-.+||..|...||..+---|..+..+.-+.++.+-..-|.+-++. ++
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-------------~~------------------ 233 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-------------PY------------------ 233 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-------------CC------------------
Confidence 46689999999999999999999998888888877654443333321 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhh
Q 000345 1044 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 1113 (1630)
Q Consensus 1044 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~-~~~~~els~a~~~~L~~lL~~~ 1113 (1630)
-.-+..|..|++++|..|+..+-. ..-..+|.++-.-+ .-...+|-.++++++..++-..
T Consensus 234 -----p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 234 -----PMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 134457889999999999987653 23445565555443 3444588899999988877543
No 24
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=63.18 E-value=1.5e+02 Score=34.31 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=50.2
Q ss_pred hhhhhHHHHHHHHHHhhcCC-----CHHHHHHHHH--HHHHHHHhccCCC--CHHHHHHHHHHhHH--HHHHHhhhhh
Q 000345 946 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAIR--TLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 1012 (1630)
Q Consensus 946 ~~~~LW~~LL~~L~~L~~D~-----R~EVRn~Aiq--TLfril~~~g~~l--~~~~W~~~~~~VLF--Pll~~l~~~~ 1012 (1630)
.|..||..|+..+.=+.+.. .+.|-.-+.+ .+|..+.+||+.| +|+..+..|.+++- +.|+++....
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 48999999998888776432 3445544444 3578888999887 78899999999986 7888886543
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.15 E-value=1.7e+02 Score=38.12 Aligned_cols=134 Identities=14% Similarity=0.189 Sum_probs=93.1
Q ss_pred ehHHHHHHHHHHhccc--chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhcc
Q 000345 694 FSVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRH 771 (1630)
Q Consensus 694 F~L~kL~eva~~N~~R--~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~ 771 (1630)
=+|+|+.|=+-.-+++ .+.--+.+..-|++...|+++.+|..|+..++|.++- .. .
T Consensus 150 ~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~--------------------q 207 (885)
T KOG2023|consen 150 GALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QT--------------------Q 207 (885)
T ss_pred HHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--Cc--------------------H
Confidence 3788888865555554 2445568888899999999999999999999997661 00 0
Q ss_pred chhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHh
Q 000345 772 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 851 (1630)
Q Consensus 772 ~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~ 851 (1630)
.....+. .|+.-+-.+ .+..+.+||+.+=..+-.+++.+-+.+...-+.|.+-+-....+.++++.--|.+-.--++.
T Consensus 208 al~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 208 ALYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 0111222 233222333 46778899999999999999999999998888888776665555666655555554444443
No 26
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.13 E-value=43 Score=47.48 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCCCcC-CChHHHHHHHhhhhc
Q 000345 792 TQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVAD 832 (1630)
Q Consensus 792 ~~~~eVr~~iL~~L~~iL~~~g~~L~-sgW~~If~iL~~~~~ 832 (1630)
....+||.+.|+.+..|+..+|+.+. .-|..||.+|=.+++
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeeccc
Confidence 45669999999999999999999995 899999997766654
No 27
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=54.05 E-value=1.3e+02 Score=35.90 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhCCCCCCc---------ccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCC
Q 000345 14 LSAEARRRYPAVKDGAEHAILKLRSLSSPSE---------LAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVA 84 (1630)
Q Consensus 14 L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~---------l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~ 84 (1630)
+..-.++-++++|-.|=+++-.+=....... ......+++-|.-..++.++++..+|..++-||+-+|.+.
T Consensus 69 ~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 69 FLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 3334444578888877777544433332211 1234578999999999999999999999999999999997
Q ss_pred c
Q 000345 85 P 85 (1630)
Q Consensus 85 ~ 85 (1630)
.
T Consensus 149 ~ 149 (298)
T PF12719_consen 149 D 149 (298)
T ss_pred c
Confidence 7
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.84 E-value=2.8e+02 Score=33.78 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=85.5
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHh
Q 000345 710 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 789 (1630)
Q Consensus 710 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~ 789 (1630)
-..+|.++-. ...|++..+|.+|++++...+..-. ..|...+|.-++..+..++
T Consensus 122 ~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 122 SLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKIL 175 (342)
T ss_pred hccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHH
Confidence 3567998888 3468899999999999998766321 2344556655677777777
Q ss_pred ccCCcHHHHHHHHHHHHHHHHccCCC----c-CCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccC
Q 000345 790 FSTQSTDVRAGTLKILLHVLERCGEK----L-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGL 854 (1630)
Q Consensus 790 ~~~~~~eVr~~iL~~L~~iL~~~g~~----L-~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL 854 (1630)
..+...++|..+|-.+..+|.++-.- + -.||..+-.++..-.. +..+.+.++.-+..+.....
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhhh
Confidence 88888899999999999999876432 2 3899999999887432 45677777777776665433
No 29
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.17 E-value=7.5e+02 Score=33.37 Aligned_cols=145 Identities=20% Similarity=0.270 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhhcChhH-HHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCC--C
Q 000345 7 LESDLRALSAEARRRYPAV-KDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--V 83 (1630)
Q Consensus 7 L~~dL~~L~~EskRK~~~l-k~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~--i 83 (1630)
|..|...|.+- ++|.| |+|+-.+...++..++ ..+.|+.+|.-....|+.-+...++.-+..++..+- +
T Consensus 143 lapeVe~Ll~~---~~~~irKKA~Lca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 143 LAPEVERLLQH---RDPYIRKKAALCAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred hhHHHHHHHhC---CCHHHHHHHHHHHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 34444444443 44555 6777788888887654 245788888888788888888888888888876632 1
Q ss_pred C--cchHHHHHHHHHhc-----------cCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHH
Q 000345 84 A--PSALKEIFSMLKNH-----------ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSV 150 (1630)
Q Consensus 84 ~--~~~l~~Il~~l~~~-----------~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v 150 (1630)
. .+..+..+..|.+. ..+.|.=+|+|||+.|-.+-++. .-..|.|.++|.-.++=..+|
T Consensus 215 ~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d--~daSd~M~DiLaqvatntdss------ 286 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND--ADASDLMNDILAQVATNTDSS------ 286 (866)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhccccc------
Confidence 1 12344455555543 33467789999999999998873 224577888877655543444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000345 151 RNTAAATFRQAVALIFD 167 (1630)
Q Consensus 151 ~~TA~ATL~Qlv~~VF~ 167 (1630)
.|..-|-|-+-|.+||+
T Consensus 287 kN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMD 303 (866)
T ss_pred ccchhHHHHHHHHHHHh
Confidence 44456678777777775
No 30
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=51.98 E-value=1.2e+02 Score=33.40 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHH
Q 000345 709 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 788 (1630)
Q Consensus 709 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L 788 (1630)
|...+=+....++.....++++.+|..|+-.|.+|+.+-.-+ .....|- .++ ..
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---------------------~k~~l~~-~~l----~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---------------------VKGQLFS-RIL----KL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---------------------ehhhhhH-HHH----HH
Confidence 455556677888888889999999999999999998732211 0011111 111 11
Q ss_pred hccCCcHHHHHHHHHHHHHHHHc-cCCCcCCChHHHHHHHh
Q 000345 789 YFSTQSTDVRAGTLKILLHVLER-CGEKLHYSWPSILELLR 828 (1630)
Q Consensus 789 ~~~~~~~eVr~~iL~~L~~iL~~-~g~~L~sgW~~If~iL~ 828 (1630)
-...+.+||.....++.++... .++.+ +..+-++|.
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~ 108 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELIS 108 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHH
Confidence 1467889999999999999988 45445 333444444
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=47.61 E-value=97 Score=30.67 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhhhhccccccC
Q 000345 860 DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQN 939 (1630)
Q Consensus 860 ~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 939 (1630)
+++..++.-+-+.. .+.|..+-..|...|.+++...+...
T Consensus 23 ~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~--------------------------------------- 62 (97)
T PF12755_consen 23 KYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEI--------------------------------------- 62 (97)
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 34444444433222 33478889999999999876655320
Q ss_pred CCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000345 940 HSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTL 981 (1630)
Q Consensus 940 ~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril 981 (1630)
-...-.+|..|.+++.|+.+.||++| +.|=|.|
T Consensus 63 --------l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 63 --------LPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred --------HHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 01223366888999999999999999 5555544
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=47.47 E-value=6.5e+02 Score=34.58 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHhhhcCCCCCCCCCC----CCCCCC---eeehHHHHHH-HHHHhccc
Q 000345 638 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTS----SQKIGS---ISFSVERMIS-ILVNNLHR 709 (1630)
Q Consensus 638 ~~l~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~i~~~~~~~~~~~----~~~~~~---~~F~L~kL~e-va~~N~~R 709 (1630)
.++.++..++=+.|.. ....--.++.+|..++...+...-++.-|+- +++... ++=.|.++.. ++..+-.+
T Consensus 435 ~iVkai~~qlr~ks~k-t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVK-TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHhhcccc-chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 3666676555555544 4444555666777776655433221111100 001000 0112222222 12333445
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHh
Q 000345 710 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 789 (1630)
Q Consensus 710 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~ 789 (1630)
++..-..++.-......++-..+.-.|.-+.-+++. .+.+-+ . +. .-+ ....+..++-..+..+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl~-----~-~~--~~d------~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPLQ-----P-PS--SFD------ASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-HhcccC-----C-Cc--cCC------CChhHHHHHHHHHHHHh
Confidence 566566666666666666767777778777777766 332210 0 00 000 01112223333445555
Q ss_pred ccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000345 790 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 869 (1630)
Q Consensus 790 ~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L 869 (1630)
....+-|||+..+.|+.+++-.+|+.++.--+.++.|+.---+ ++.---.|+..+.+|..--+.-=-...+...+.-+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 6778889999999999999999999999999999998865433 44444578999999986555421134577888888
Q ss_pred HHHHhcc
Q 000345 870 GAYSSQK 876 (1630)
Q Consensus 870 ~~F~~q~ 876 (1630)
..|++-.
T Consensus 657 ~~flrK~ 663 (1233)
T KOG1824|consen 657 ASFLRKN 663 (1233)
T ss_pred HHHHHHH
Confidence 8888754
No 33
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.76 E-value=9.2e+02 Score=32.58 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=73.7
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH---HHhHHHHHHHhhhhhccCCcccccccccccCC
Q 000345 954 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL---WNYVFPMLDCASHMAATSSKDEWQGKELGTRG 1029 (1630)
Q Consensus 954 LL~~L~~L~~D~-R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~---~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~ 1029 (1630)
++..+.++-.|+ ..-||=.|++||=-.++.. .|+++.....+ +.-+|.|+..+.+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e------------------- 585 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE------------------- 585 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh-------------------
Confidence 445567777887 8999999999998888743 34454444443 3344444444421
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCch--HHHHHHHHHHH
Q 000345 1030 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSK--EVSLAAINCLQ 1107 (1630)
Q Consensus 1030 ~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~--els~a~~~~L~ 1107 (1630)
-||++.+|+.++.+..+-=+.+.. .=..+++|+..+...... -+..|.+..|.
T Consensus 586 -------------------~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 586 -------------------CDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 178888888888887665554432 224456666666543332 37777778888
Q ss_pred HHHhhhcC
Q 000345 1108 TTVLSHST 1115 (1630)
Q Consensus 1108 ~lL~~~~~ 1115 (1630)
+++...+.
T Consensus 641 ~lV~alg~ 648 (978)
T KOG1993|consen 641 NLVNALGA 648 (978)
T ss_pred HHHHHhcc
Confidence 88877654
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=1.1e+02 Score=39.65 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhc
Q 000345 711 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 790 (1630)
Q Consensus 711 ~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~ 790 (1630)
..-|+-+-..|.++..+++.+.-+=|..+|.++....- +| ...+...+.+. .++--|... .
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~--------------lds~~~~rpl~-~mipkfl~f-~ 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QF--------------LDSDVLTRPLN-IMIPKFLQF-F 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HH--------------HhhhcccCchH-HhHHHHHHH-H
Confidence 45689999999999998887778888888888754211 00 00122334444 233333344 3
Q ss_pred cCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 000345 791 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 870 (1630)
Q Consensus 791 ~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L~ 870 (1630)
..+++.||...+.|+.++|-...+.+.-.=+..++.|-.-+.+.++++=+.-..+|-.+..=....|- ..+...|+-.
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyM- 261 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYM- 261 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHH-
Confidence 45689999999999999988888777777777777776666666665555555555555432222221 1233333322
Q ss_pred HHHhccCCcchhhhHHHHHHHHH
Q 000345 871 AYSSQKTELNISLTAVGLLWTTT 893 (1630)
Q Consensus 871 ~F~~q~~dlNISLtAi~llW~is 893 (1630)
-...|+.|.|++|.|..+.-.++
T Consensus 262 L~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHHh
Confidence 23457789999999998755544
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=44.74 E-value=45 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 000345 717 VVGHFLELADNSNQHLRNIALDALDQSIC 745 (1630)
Q Consensus 717 l~~hli~v~~~~n~~lr~~Avd~L~~li~ 745 (1630)
+..+|.+..++++..+|..|+..|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34678889999999999999999999864
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.64 E-value=6e+02 Score=35.68 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHH
Q 000345 724 LADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLK 803 (1630)
Q Consensus 724 v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~ 803 (1630)
.-++.+..++.+|-+.|..++.. -.-+.| . +......++.++.++... ..-++.--|.
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~---------~-------~q~i~~I~n~L~ds~qs~-----~~~~~~~rl~ 719 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSS-PSGEGL---------V-------EQRIDDIFNSLLDSFQSS-----SSPAQASRLK 719 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcC-CchhhH---------H-------HHHHHHHHHHHHHHHhcc-----chHHHHHHHH
Confidence 34556788999999999887653 000000 0 112234444666665543 3467888899
Q ss_pred HHHHHHHccC-CCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHH--hccCCCC--C-hhhHHHHHHHHHHH
Q 000345 804 ILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM--NDGLSSI--P-TDCIHECVDVTGAY 872 (1630)
Q Consensus 804 ~L~~iL~~~g-~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~--~DfL~~L--p-~~~~~~lV~~L~~F 872 (1630)
||+.|++.++ +....==+.|-++|-.. .+.+...=+.||++|..|+ .-++... | .+.+...+..++.=
T Consensus 720 ~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 720 CLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 9999999887 11111122333444333 4456678889999999999 4443322 2 34455555555443
No 37
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=43.59 E-value=1.1e+03 Score=32.69 Aligned_cols=261 Identities=15% Similarity=0.123 Sum_probs=147.3
Q ss_pred cCCcHHHHHHHHHHHHHHHHccCCCcC-CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000345 791 STQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 869 (1630)
Q Consensus 791 ~~~~~eVr~~iL~~L~~iL~~~g~~L~-sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L 869 (1630)
.+.+-|+|.+...-|..=|+.-.-+|. .+-+-+..+|-..-.+++.++-..|-.|+-.++ +-++.+.+...|+.|
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lv----sKvke~~le~~ve~L 90 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLV----SKVKEDQLETIVENL 90 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHH----hhchHHHHHHHHHHH
Confidence 456778899988888888887655554 566666666665555667789999999999888 458889999999998
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHHHHcccCC-Cchhh-----HhhhhcccCCCcccCCc------chhhhhhhccccc
Q 000345 870 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEE-----KEAANQDLCSVPKQMDG------EKREEKTLSNLDD 937 (1630)
Q Consensus 870 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~-~~~~~-----k~~~~~~~~~~~~~~~~------~~~e~~~~~~~~~ 937 (1630)
..=.-...++-.-++|+++.-.++.-=..-... .+... +-.++. +..+..++ ...++..+.+
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i---~~qe~~sai~~e~lDil~d~lsr~--- 164 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAI---SKQEDVSAIKCEVLDILADVLSRF--- 164 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHh---hhcccchhhHHHHHHHHHHHHHhh---
Confidence 876555556666777888765544221100000 00000 000000 00000000 0000111100
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCc
Q 000345 938 QNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSK 1017 (1630)
Q Consensus 938 ~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~ 1017 (1630)
+.. .+ .+-..++-.+.....-+|..||+.||..|=.. ..+|.. ..+.+++=-+++.+...
T Consensus 165 --g~l-l~---~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l-a~~~~~-------~ly~~li~~Ll~~L~~~------ 224 (1233)
T KOG1824|consen 165 --GTL-LP---NFHLSILKCLLPQLQSPRLAVRKKAITALGHL-ASSCNR-------DLYVELIEHLLKGLSNR------ 224 (1233)
T ss_pred --ccc-Cc---chHHHHHHHHhhcccChHHHHHHHHHHHHHHH-HHhcCH-------HHHHHHHHHHHhccCCC------
Confidence 000 01 12334566666666789999999999765443 333332 23444454555544211
Q ss_pred ccccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchH
Q 000345 1018 DEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE 1097 (1630)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~e 1097 (1630)
++-.-.-|.+.+++.+++--.+.|..-. +| .-..+.+|-. .+..+..|
T Consensus 225 --------------------------~q~~~~rt~Iq~l~~i~r~ag~r~~~h~---~~--ivp~v~~y~~-~~e~~dDE 272 (1233)
T KOG1824|consen 225 --------------------------TQMSATRTYIQCLAAICRQAGHRFGSHL---DK--IVPLVADYCN-KIEEDDDE 272 (1233)
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHhcchhhccc---ch--hhHHHHHHhc-ccccCcHH
Confidence 1112236777888888776666554211 22 2223444443 34677789
Q ss_pred HHHHHHHHHHHHHhhh
Q 000345 1098 VSLAAINCLQTTVLSH 1113 (1630)
Q Consensus 1098 ls~a~~~~L~~lL~~~ 1113 (1630)
+-+..+..|.-+|...
T Consensus 273 LrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988764
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=41.81 E-value=9e+02 Score=31.33 Aligned_cols=225 Identities=12% Similarity=0.068 Sum_probs=123.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCCCcC--CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCC--CC-ChhhHHHHH
Q 000345 792 TQSTDVRAGTLKILLHVLERCGEKLH--YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLS--SI-PTDCIHECV 866 (1630)
Q Consensus 792 ~~~~eVr~~iL~~L~~iL~~~g~~L~--sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~--~L-p~~~~~~lV 866 (1630)
.++..||+.++..|..+++....... .+=..+-.++... .+.+..+.+.|-++|+-+++.... .+ +.+ .+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~----~~ 162 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSN----LL 162 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc----hH
Confidence 46789999999999998876543111 1111222222222 335667888888888888763211 11 222 15
Q ss_pred HHHHHHHhccCCcchhhhHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCcccCCcchhhhhhhccccccCCCCCcch
Q 000345 867 DVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD 946 (1630)
Q Consensus 867 ~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 946 (1630)
..|.....+. +-.+-+...+++..++ +. +. +
T Consensus 163 ~~L~~l~~~~-~~~vR~Rv~el~v~i~----~~----S~-~--------------------------------------- 193 (503)
T PF10508_consen 163 SKLKSLMSQS-SDIVRCRVYELLVEIA----SH----SP-E--------------------------------------- 193 (503)
T ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHH----hc----CH-H---------------------------------------
Confidence 6666666663 2233445555544432 10 00 0
Q ss_pred hhhhHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccc
Q 000345 947 RDKLLFA--VFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKE 1024 (1630)
Q Consensus 947 ~~~LW~~--LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~ 1024 (1630)
....+.. +|..+.+.-.++..=||-.|+.+|-.+-.. +...+.+...=+|+.+.++...... | + .
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~------~~g~~yL~~~gi~~~L~~~l~~~~~---d-p---~ 260 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET------PHGLQYLEQQGIFDKLSNLLQDSEE---D-P---R 260 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC------hhHHHHHHhCCHHHHHHHHHhcccc---C-C---c
Confidence 0011111 445555555568889999999999888762 2224556666677766666421110 0 0 0
Q ss_pred cccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 000345 1025 LGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAIN 1104 (1630)
Q Consensus 1025 ~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~ 1104 (1630)
...+.+-|..+-|.+-... ....+...+..+++.+.+++.++......+|+.
T Consensus 261 --------------------------~~~~~l~g~~~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 261 --------------------------LSSLLLPGRMKFFGNLARV--SPQEVLELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred --------------------------ccchhhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 1113333333222221111 233455667778888888888888888889999
Q ss_pred HHHHHHh
Q 000345 1105 CLQTTVL 1111 (1630)
Q Consensus 1105 ~L~~lL~ 1111 (1630)
++..+=.
T Consensus 313 tlg~igs 319 (503)
T PF10508_consen 313 TLGQIGS 319 (503)
T ss_pred HHHHHhC
Confidence 9887643
No 39
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=41.22 E-value=2.5e+02 Score=30.18 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhh
Q 000345 959 KKLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHML 1036 (1630)
Q Consensus 959 ~~L~~D~R~EVRn~AiqTLfril~~~g--~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1036 (1630)
.+.....+.-=|+.|++.|-+++...- ..++...|+.+|. .||-.+..-.+......+. .
T Consensus 10 ~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~-~---------------- 71 (155)
T PF11640_consen 10 LRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSS-S---------------- 71 (155)
T ss_pred HHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCc-c----------------
Confidence 333455677789999999999998765 8899999988875 6666666544322100000 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHhh
Q 000345 1037 IHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTTVLS 1112 (1630)
Q Consensus 1037 vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~e----ls~a~~~~L~~lL~~ 1112 (1630)
.+.-+....=.+.+.-++..++......+... .-..|++|+-..+.....+ ++.--.++|+.+|..
T Consensus 72 --~s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~k--------t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 72 --ASTATTAESRLSSCASALRLFVEKSNSRLKRK--------TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 00000000112444445555555544444322 3356788888888766644 455555666666654
No 40
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=38.31 E-value=5e+02 Score=32.81 Aligned_cols=198 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcc----------cccc
Q 000345 953 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKD----------EWQG 1022 (1630)
Q Consensus 953 ~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l~~~~W~~~~~~VLFPll~~l~~~~~~~s~~----------~~~~ 1022 (1630)
.+...|..+..++|.+=|++|++-|..++..-+-.+ |+.+|.++|.-+|+.+....+...+. ..+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsv----Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSV----WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhH----HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Q ss_pred cccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHH
Q 000345 1023 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAA 1102 (1630)
Q Consensus 1023 ~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~ 1102 (1630)
..+- ....|.|..--+.+...=++|...|-.-..++..+|..... +.-+..++.......+.++
T Consensus 363 ~~l~----DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~------------I~~i~~~Ilt~D~~~~~~~ 426 (516)
T KOG2956|consen 363 ARLF----DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC------------IVNISPLILTADEPRAVAV 426 (516)
T ss_pred Hhhh----chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH------------HHHHhhHHhcCcchHHHHH
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 000345 1103 INCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDL 1182 (1630)
Q Consensus 1103 ~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~il~~ 1182 (1630)
++++..+...... ++....+-|+-=.++++-..... .....++=|+..+|. .+..++++-=|.-|..
T Consensus 427 iKm~Tkl~e~l~~-----EeL~~ll~diaP~~iqay~S~SS----~VRKtaVfCLVamv~----~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 427 IKMLTKLFERLSA-----EELLNLLPDIAPCVIQAYDSTSS----TVRKTAVFCLVAMVN----RVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHHHHHHHhhcCH-----HHHHHhhhhhhhHHHHHhcCchH----HhhhhHHHhHHHHHH----HHhHHhhhhHhhhccH
Q ss_pred H
Q 000345 1183 A 1183 (1630)
Q Consensus 1183 ~ 1183 (1630)
+
T Consensus 494 s 494 (516)
T KOG2956|consen 494 S 494 (516)
T ss_pred H
No 41
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=38.00 E-value=70 Score=30.87 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 000345 1050 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1108 (1630)
Q Consensus 1050 ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~ 1108 (1630)
|.+-+.+..+..+...+.+.|. ..|..+++.+......++.++...|+.+++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIK------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 7788999999999999888775 3799999999999988888999999998875
No 42
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.44 E-value=1.3e+02 Score=33.44 Aligned_cols=89 Identities=10% Similarity=0.237 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCCcch-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCCh
Q 000345 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1630)
Q Consensus 49 ~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~~~~-l~~Il~~l~~~~~~~dE~vqLKILQ~L~~l~~s~~~~i~g 127 (1630)
..|+...+..|-+.++++...|+..|+-.+.+|+++|.. ++.++ ||. ++ .++.+.=+-.+.+..+...|..-++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999999999999998865 44444 443 23 34457777788888888777555543
Q ss_pred HHHHHHHHHHHhhhc
Q 000345 128 DNMAQALGICLRLLE 142 (1630)
Q Consensus 128 ~~L~~~l~~C~~L~~ 142 (1630)
...++++.+|..+.
T Consensus 83 -~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 83 -RYSEGIRLAFDYQR 96 (187)
T ss_pred -HHHHHHHHHHHHHH
Confidence 46778888888765
No 43
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.97 E-value=1.3e+03 Score=31.37 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCCcCCChHHHHHHHhhhhcccc--h-hHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhccCCcchhhhHHHHH
Q 000345 813 GEKLHYSWPSILELLRSVADASE--K-DLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLL 889 (1630)
Q Consensus 813 g~~L~sgW~~If~iL~~~~~~~~--~-~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ll 889 (1630)
|++=...-+.+-+||..++...+ + .-=.+=|+|++-|++=... ..-....|++|++|..+. |-||-.-|+..|
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~---~~LrvlainiLgkFL~n~-d~NirYvaLn~L 337 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN---SGLRVLAINILGKFLLNR-DNNIRYVALNML 337 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC---chHHHHHHHHHHHHhcCC-ccceeeeehhhH
Confidence 44434444555555555544211 1 1223458888888752211 233567899999999997 999988887655
No 44
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.27 E-value=26 Score=42.81 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.1
Q ss_pred ccCCcchhhHHHHHHHHHH
Q 000345 438 VLVASEAHSITLAIEGLLG 456 (1630)
Q Consensus 438 ~~l~~Ea~~I~~~~e~~a~ 456 (1630)
++++||||+|.|++|.|+-
T Consensus 288 irvqgEAqKveRlIeAFsq 306 (627)
T KOG0931|consen 288 IRVQGEAQKVERLIEAFSQ 306 (627)
T ss_pred eecccHHHHHHHHHHHHHH
Confidence 3589999999999999985
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=33.47 E-value=78 Score=31.25 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCcHH
Q 000345 717 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 796 (1630)
Q Consensus 717 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~e 796 (1630)
+..++++...+.+..+|..|+..|..++... ++ ......+..++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----------------~~-----~~~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-----------------ND-----NIQAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-----------------HH-----HHHHHHHCCChHHHHHHHh-CCCHH
Confidence 4567778888888999999999999986521 00 0011122123344444443 35789
Q ss_pred HHHHHHHHHHHHHHccCCCcCCChHH-HHHHHhhhhcccchhHHHHHHHHHHHHH
Q 000345 797 VRAGTLKILLHVLERCGEKLHYSWPS-ILELLRSVADASEKDLITLGFQSLRFIM 850 (1630)
Q Consensus 797 Vr~~iL~~L~~iL~~~g~~L~sgW~~-If~iL~~~~~~~~~~lv~~aF~~LqlI~ 850 (1630)
+++..+.+|.++.+........-|+. +...|...-...+....+.+..+|..++
T Consensus 65 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 99999999999976543211111111 2222222222234456666666555544
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=29.46 E-value=1.5e+02 Score=39.84 Aligned_cols=95 Identities=14% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHhCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 000345 265 ILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT 344 (1630)
Q Consensus 265 iL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~Lk~E~EvfLs~l~~~l 344 (1630)
+++.-..+..-.|+|.+..+.++||+++..+..+++ .|+...++.-+|--++. -....+..+|.++..++.++
T Consensus 550 lmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 550 LMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred HHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHH
Confidence 344444555668999999999999999999887764 56554455555555555 33456788999999999998
Q ss_pred cCCC---cHHHHHHHHHHHHHHhcC
Q 000345 345 FLDL---PLWHRILVLEILRGFCVE 366 (1630)
Q Consensus 345 ~~~~---~~w~r~l~LE~l~~l~~d 366 (1630)
..+. |.-.-.++++++.-+.+.
T Consensus 623 ~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 623 QLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred cCcccccCchhhHHHHHHHHHHHhc
Confidence 6542 445567888888765443
No 47
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=29.12 E-value=7.3e+02 Score=29.64 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCc
Q 000345 715 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 794 (1630)
Q Consensus 715 ~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~ 794 (1630)
..+.+.++-...|++..+|+.|+..|--.+. +.+ +.....+. .| ...+.. .+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~--------------------~~a~~~l~-l~----~~~~~~-~~ 77 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL--LDK--------------------ELAKEHLP-LF----LQALQK-DD 77 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCh--------------------HHHHHHHH-HH----HHHHHh-CC
Confidence 3444455567788889999999999987654 211 01111222 22 222222 38
Q ss_pred HHHHHHHHHHHHHHHHccCCCcCCChH---------HHHHHHhhhhcccchhHHHHHHH
Q 000345 795 TDVRAGTLKILLHVLERCGEKLHYSWP---------SILELLRSVADASEKDLITLGFQ 844 (1630)
Q Consensus 795 ~eVr~~iL~~L~~iL~~~g~~L~sgW~---------~If~iL~~~~~~~~~~lv~~aF~ 844 (1630)
.+|+...++++-.++-.||...-..+. .+.+++.......++++-..|-+
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~E 136 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVE 136 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999999999977654443 35555544443333333333333
No 48
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.62 E-value=1.3e+02 Score=29.82 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=53.4
Q ss_pred HHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHh
Q 000345 776 SIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 851 (1630)
Q Consensus 776 ~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~ 851 (1630)
.++ .++.|+... ...++..||....|+|.+|....++.+-.--..||..|.....+.++ -|+.|-+.|.-.+.
T Consensus 24 ~l~-~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~-~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLD-EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE-NVRSAAELLDRLLK 96 (97)
T ss_pred HHH-HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhc
Confidence 444 566676655 45778899999999999999887776666778888888777766554 46766676655443
No 49
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=27.28 E-value=44 Score=37.12 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.2
Q ss_pred ccCCcchhhHHHHHHHHHHHHH
Q 000345 438 VLVASEAHSITLAIEGLLGVVF 459 (1630)
Q Consensus 438 ~~l~~Ea~~I~~~~e~~a~~i~ 459 (1630)
+.+|||+|.|+|++|.|++.++
T Consensus 92 f~lpgE~Q~Idrile~Fs~~y~ 113 (185)
T cd00171 92 FRLPGEAQKIDRLLEKFSERYC 113 (185)
T ss_pred ccCCchHHHHHHHHHHHHHHHH
Confidence 3489999999999999998655
No 50
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.23 E-value=5.2e+02 Score=27.96 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhHhhhcCCCCCCCCCCCCCCCCeeehHHHHHHHHHHhc---c---c----chhhHHHHHHHHHHHhcCC
Q 000345 659 VKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNL---H---R----VEPLWDQVVGHFLELADNS 728 (1630)
Q Consensus 659 ~~~fv~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~---~---R----~~~iW~~l~~hli~v~~~~ 728 (1630)
...+++.||.++........ .+........++.|+|+-+-.+-..+- . + ...+++.+..+++..+.++
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~--~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~ 85 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGN--SPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS 85 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCC--CcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999854322111 000001123445777765444322211 1 1 2466889999999999988
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000345 729 NQHLRNIALDALDQSICAV 747 (1630)
Q Consensus 729 n~~lr~~Avd~L~~li~~~ 747 (1630)
+..+-..+...+..++.++
T Consensus 86 ~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888899999999988755
No 51
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=26.40 E-value=48 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.3
Q ss_pred ccCCcchhhHHHHHHHHHHHHH
Q 000345 438 VLVASEAHSITLAIEGLLGVVF 459 (1630)
Q Consensus 438 ~~l~~Ea~~I~~~~e~~a~~i~ 459 (1630)
+.+|||+|.|+|++|+|+..++
T Consensus 93 f~lpgE~q~Idrile~Fs~~y~ 114 (187)
T smart00222 93 FRLPGEAQKIDRLLEAFSSRYC 114 (187)
T ss_pred CcCCchHHHHHHHHHHHHHHHH
Confidence 3589999999999999998655
No 52
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=26.16 E-value=1.2e+03 Score=28.08 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 000345 1049 DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVL 1128 (1630)
Q Consensus 1049 ~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~ 1128 (1630)
..|+.-+|.++.++|.+++.. +...+-...|++.+.++++.+..+=...|.+.+.=+....+. +.-..++++.+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-g~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-GEDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHH
Confidence 388999999999999888741 222456788999999999887764333445555444333322 222467777777
Q ss_pred HHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHH
Q 000345 1129 DVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLR 1206 (1630)
Q Consensus 1129 ~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~~~~~~~~~~~d~~~--~s~lQ~ 1206 (1630)
.+..+++.-... ..+..+.++.|+.-+--. ..-+.+.+...+..|.......++..+...+.+.. -+++..
T Consensus 132 ~~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 132 PVLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 777666553211 123446666666554321 23456777766666663322112222222222222 367888
Q ss_pred HHHHhcccc
Q 000345 1207 TILEILPLL 1215 (1630)
Q Consensus 1207 ~vl~~l~~i 1215 (1630)
+.|.+--.+
T Consensus 205 aAL~aW~lL 213 (309)
T PF05004_consen 205 AALSAWALL 213 (309)
T ss_pred HHHHHHHHH
Confidence 888875444
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=25.94 E-value=6.2e+02 Score=27.72 Aligned_cols=136 Identities=10% Similarity=0.043 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000345 729 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 808 (1630)
Q Consensus 729 n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~~eVr~~iL~~L~~i 808 (1630)
|+.+|..|+-++.+++.++- + ..-..... + ... -.+.++.||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~------~----------------~ve~~~~~-l----~~~-L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP------N----------------LVEPYLPN-L----YKC-LRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc------H----------------HHHhHHHH-H----HHH-HCCCCHHHHHHHHHHHHHH
Confidence 57899999999999988531 0 00011111 1 111 2356889999999999999
Q ss_pred HHccCCCcCCChHHH-HHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhccCCcchhhhHHH
Q 000345 809 LERCGEKLHYSWPSI-LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVG 887 (1630)
Q Consensus 809 L~~~g~~L~sgW~~I-f~iL~~~~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ 887 (1630)
+.+. .++ -...+ +.++.... +.++++...|=.++.-+...--+.. -...+++++..|.....+..+.-....
T Consensus 53 i~~d--~ik-~k~~l~~~~l~~l~-D~~~~Ir~~A~~~~~e~~~~~~~~~---i~~~~~e~i~~l~~~~~~~~~~~~~~~ 125 (178)
T PF12717_consen 53 ILED--MIK-VKGQLFSRILKLLV-DENPEIRSLARSFFSELLKKRNPNI---IYNNFPELISSLNNCYEHPVYGPLSRE 125 (178)
T ss_pred HHcC--cee-ehhhhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHhCccccccccccCHH
Confidence 9863 222 12233 56666553 4566666666666665554321222 234455555666554322222112334
Q ss_pred HHHHHHHHHHcc
Q 000345 888 LLWTTTDFIAKG 899 (1630)
Q Consensus 888 llW~isD~L~~~ 899 (1630)
-++.+-+|+-..
T Consensus 126 ~~~~I~~fll~~ 137 (178)
T PF12717_consen 126 KRKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
No 54
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.10 E-value=9e+02 Score=26.21 Aligned_cols=101 Identities=16% Similarity=0.024 Sum_probs=66.7
Q ss_pred HHHHHHhCcccccCC-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Q 000345 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1630)
Q Consensus 262 IesiL~n~~~~F~~~-~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~-~~~Lk~E~EvfLs~ 339 (1630)
|-+.|.+++.+-... ....+.++.++-.+| +++.. ..-+ .-+.++...+..- ...|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw--~G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRW--AGLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566666665554 566677777766666 43211 1112 2455555555554 57888999999999
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHh----cChHHHHHHH
Q 000345 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLLF 374 (1630)
Q Consensus 340 l~~~l~~~~~~w~r~l~LE~l~~l~----~dp~ll~~iy 374 (1630)
++++|+.+.|.--+..+...+..|+ .-|++.|++-
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~ 110 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIA 110 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh
Confidence 9999988777777778888887775 4577777763
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.48 E-value=1.8e+02 Score=28.52 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhCCCCC-CcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccC
Q 000345 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1630)
Q Consensus 13 ~L~~EskRK~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~ 81 (1630)
.|..--+..++++|..+=.++..+-..... ........++.+++....+++.++...|+.+|..|...+
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 344444556788888877777776554211 011123467777777778889999999999999997654
No 56
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=24.13 E-value=6.9e+02 Score=29.29 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=85.2
Q ss_pred HHHHHHHHHHh-hcChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCCcch
Q 000345 9 SDLRALSAEAR-RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1630)
Q Consensus 9 ~dL~~L~~Esk-RK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~~~~ 87 (1630)
.+|+.|+.--+ .+.|.+++.+--++......+..++..+.-..+.++.--..++++++...|+.+|..|-.. .=....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHH
Confidence 57788887655 4689999999999988877666555555556666777777889999999999999877222 111123
Q ss_pred HHHHHHHHHhc--cCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhc
Q 000345 88 LKEIFSMLKNH--ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1630)
Q Consensus 88 l~~Il~~l~~~--~~~~dE~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~ 142 (1630)
++.-+.-+++- +..-+..+|+--|+.|..+-.+. -+...+.+.+.-+++|..
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHH
Confidence 33334444432 12224468999999888884332 123456777777777743
No 57
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.53 E-value=9.6e+02 Score=29.10 Aligned_cols=171 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhccHHHHhccCCc
Q 000345 715 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 794 (1630)
Q Consensus 715 ~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~~l~pl~~L~~~~~~ 794 (1630)
+.+.++.-.-|......-..+....+++=+.+.++. ..+.....+.....+-.-++.++..-|..+..
T Consensus 18 ~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t------------~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p 85 (319)
T PF08767_consen 18 QIISQAVAESGEIATKTPKVRLLRTIKKEILKLIET------------FISKAEDPEEVANNFIPPLLDAVLGDYQNSVP 85 (319)
T ss_dssp HHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHH------------HHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHH------------HHhccCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q ss_pred HHHHHHHHHHHHHHHHccCCCcCCChHHHHHHHhhhhc-------ccchhHHHHHHHHHHHHHhccCC---CCChhhHHH
Q 000345 795 TDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVAD-------ASEKDLITLGFQSLRFIMNDGLS---SIPTDCIHE 864 (1630)
Q Consensus 795 ~eVr~~iL~~L~~iL~~~g~~L~sgW~~If~iL~~~~~-------~~~~~lv~~aF~~LqlI~~DfL~---~Lp~~~~~~ 864 (1630)
.-==-.+|.++..|+.+.|+.+...=+.|++.+=.+.- ...|+.-..=|.-++.|+..+++ .+|.+.|..
T Consensus 86 ~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 86 DAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL 165 (319)
T ss_dssp GGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH
T ss_pred cccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHc
Q 000345 865 CVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 898 (1630)
Q Consensus 865 lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~ 898 (1630)
+++++ .+|-+..+-+|+-+++..+-.+.+.+.+
T Consensus 166 ~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 166 VIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
No 58
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.85 E-value=1.3e+03 Score=27.30 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhHHHHHHHhhhhhccCCcccccc
Q 000345 947 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKL----SESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 1022 (1630)
Q Consensus 947 ~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~l----~~~~W~~~~~~VLFPll~~l~~~~~~~s~~~~~~ 1022 (1630)
....|-.++-.+-.+.-|..+++|-.+++.|..++..-.... ..--...+|.+.++|.+--+-
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP------------- 179 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLP------------- 179 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCC-------------
Confidence 345676777788888999999999999999999998433222 221223344444444444331
Q ss_pred cccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhcc--ccccchHHHHHH-HHHHHHHHHhCCchHHH
Q 000345 1023 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFL--ANLSNFWTGWES-LLHFVKNSILNGSKEVS 1099 (1630)
Q Consensus 1023 ~~~~~~~~~~~~~~vhhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L--~~~~~F~~~W~~-LL~~l~~~~~~~~~els 1099 (1630)
.-+...+..+-...+..-+..|+..-+..= .....+.+.... +|..+..........+.
T Consensus 180 ------------------~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~ 241 (282)
T PF10521_consen 180 ------------------PITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLR 241 (282)
T ss_pred ------------------CCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHH
Confidence 011113333444555555555554433111 111222333222 44433333333357888
Q ss_pred HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhc
Q 000345 1100 LAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1136 (1630)
Q Consensus 1100 ~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 1136 (1630)
.+.++.+..++..++. ......+..+-++..+..
T Consensus 242 ~~ll~~l~~~i~~lGi---~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 242 TVLLQQLPPIIDELGI---SSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHhc
Confidence 8999999998887643 124556666666654443
No 59
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=22.69 E-value=62 Score=36.12 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.0
Q ss_pred ccCCcchhhHHHHHHHHHHHHH
Q 000345 438 VLVASEAHSITLAIEGLLGVVF 459 (1630)
Q Consensus 438 ~~l~~Ea~~I~~~~e~~a~~i~ 459 (1630)
+.+|||+|.|+|+++.||+.++
T Consensus 96 f~LpgE~q~idril~~Fs~~y~ 117 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYY 117 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHH
Confidence 4589999999999999998765
No 60
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=21.87 E-value=5.1e+02 Score=27.77 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHccC--CCc-CCChHHHHHHHhhhhc-c-------c---ch------hHHHHHHHHHHHHHhccC
Q 000345 795 TDVRAGTLKILLHVLERCG--EKL-HYSWPSILELLRSVAD-A-------S---EK------DLITLGFQSLRFIMNDGL 854 (1630)
Q Consensus 795 ~eVr~~iL~~L~~iL~~~g--~~L-~sgW~~If~iL~~~~~-~-------~---~~------~lv~~aF~~LqlI~~DfL 854 (1630)
.-=|...|+-|.+++.... ..+ ..+|..||+.|-.... + + .. .=...+-.+|++++.-..
T Consensus 18 ~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR~~ve~~~ 97 (155)
T PF11640_consen 18 IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALRLFVEKSN 97 (155)
T ss_pred cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777788888887664 555 4899999988844322 1 0 01 125567788999999888
Q ss_pred CCCChhhHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHc
Q 000345 855 SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 898 (1630)
Q Consensus 855 ~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~ 898 (1630)
..++...+..+|+.+..-.....+--..--+..+.-.+.+.|..
T Consensus 98 ~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 98 SRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred hhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 89999888999988888877765444444466777777666654
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=21.84 E-value=5.8e+02 Score=27.05 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHhcCCCchhHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---cCCCCchHHHHHHHHHHHH--HcCC
Q 000345 47 QSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNH---ADMVDESVQLKTLQTILII--FQSR 121 (1630)
Q Consensus 47 ~~~~~l~Pfllac~sk~~kl~~iAL~~lqkLi~~~~i~~~~l~~Il~~l~~~---~~~~dE~vqLKILQ~L~~l--~~s~ 121 (1630)
+--+.+.-|+.+.++.|.+++..++++|..| +.++...+-|++++--. ...++ -+..-+.-++..+ +.-+
T Consensus 55 rql~vLdlFvdsl~e~ne~LvefgIgglCNl----C~d~~n~~~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~ 129 (173)
T KOG4646|consen 55 RQLDVLDLFVDSLEEQNELLVEFGIGGLCNL----CLDKTNAKFIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFG 129 (173)
T ss_pred HHhhHHHHHHHHhhcccHHHHHHhHHHHHhh----ccChHHHHHHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCc
Confidence 3457888899999999999999999999988 66777788888776532 11122 1233444444433 3333
Q ss_pred CCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHH
Q 000345 122 LHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1630)
Q Consensus 122 ~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv 162 (1630)
.-...++.+.-.+.-|..=+.-|++. .-+|-|++-|.|.+
T Consensus 130 ~Rt~r~ell~p~Vv~~v~r~~~s~s~-~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 130 ERTERDELLSPAVVRTVQRWRESKSH-DERNLASAFLDKHV 169 (173)
T ss_pred ccchhHHhccHHHHHHHHHHHHHhhH-HHHHHHHHHHHhhc
Confidence 33345777888777776655457877 88999998887754
No 62
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=21.78 E-value=1.2e+02 Score=29.39 Aligned_cols=50 Identities=12% Similarity=0.292 Sum_probs=33.7
Q ss_pred chhhhhHH--HHHHHHHHHHHHHHHhhhhccccc-cchHHHHHHHHHHHHHHH
Q 000345 1042 NTAQKQWD--ETLVLVLGGIARLLRSFFPFLANL-SNFWTGWESLLHFVKNSI 1091 (1630)
Q Consensus 1042 ~~~~k~W~--ET~vlaL~gl~~lf~~~~~~L~~~-~~F~~~W~~LL~~l~~~~ 1091 (1630)
+.+...|. |+..-++.|++++|..|+...... +...---..|.+|+..+.
T Consensus 13 r~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 13 RPESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred CcccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 33446685 999999999999999999866321 222212356677777654
No 63
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.22 E-value=1.9e+03 Score=28.09 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHHHhHHHHHHHhh
Q 000345 954 VFSLLKKLGADERPEVRNSAIRTLFQTL-GSHGQKLSESMWEDCLWNYVFPMLDCAS 1009 (1630)
Q Consensus 954 LL~~L~~L~~D~R~EVRn~AiqTLfril-~~~g~~l~~~~W~~~~~~VLFPll~~l~ 1009 (1630)
++..|.....-..+-|=---++.+.+.| ..||..+....|+.++ +++.-+++.+.
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~-~i~~~~~~~~~ 357 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIIL-DIIEEIFDKIQ 357 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHH-HHHHHHHhhcc
Confidence 4444444443333334456778888888 8999999999998554 55555666664
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.09 E-value=4.2e+02 Score=24.68 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=39.3
Q ss_pred hhcChhHHHHHHHHHHHHhCCCCCCcccCchHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000345 19 RRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKL 77 (1630)
Q Consensus 19 kRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iAL~~lqkL 77 (1630)
+-+++.+|..+=++|..+ ..++.+.+++-.++++++.+-..|+.+|.++
T Consensus 10 ~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp TSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 467899998876666632 3457888888889999999999999999876
Done!