Query 000345
Match_columns 1630
No_of_seqs 288 out of 717
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:57:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000345.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_122-125//hhsearch_pdb/000345hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 36.9 20.6 59 792-852 59-117 (588)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 36.5 22.7 151 10-163 7-163 (1230)
3 2qk2_A LP04448P; mini spindles 1.0 1 1 36.2 17.2 36 1078-1113 172-207 (242)
4 1b3u_A Protein (protein phosph 1.0 1 1 35.8 21.5 18 794-811 100-117 (588)
5 1qgr_A Protein (importin beta 1.0 1 1 35.0 26.9 129 21-163 13-159 (876)
6 1ibr_B P95, importin beta-1 su 1.0 1 1 34.3 19.4 118 713-853 125-248 (462)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 32.2 29.0 162 711-891 514-676 (1230)
8 1qgr_A Protein (importin beta 1.0 1 1 31.0 23.6 20 1095-1114 663-682 (876)
9 2jdq_A Importin alpha-1 subuni 1.0 1 1 29.8 11.7 110 716-851 107-221 (450)
10 2qk2_A LP04448P; mini spindles 1.0 1 1 28.7 23.3 193 718-986 17-209 (242)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=36.94 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8737899999999999997059986789189999993411036346899999999999831
Q 000345 792 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMND 852 (1630)
Q Consensus 792 ~~~~eir~~iL~~L~~iL~~~g~~L~sGW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~d 852 (1630)
..+.+||..+.+++..+.+..|.. .-|..++.+|.....+.+..+-..|.+++..++..
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~ 117 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 785899999999997787605859--89999899999987476079999999999999997
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=36.48 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999952094489999999999-85789998435903799999998537991169999999999980289893029
Q 000345 10 DLRALSAEARRRYPAVKDGAEHAILK-LRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSAL 88 (1630)
Q Consensus 10 dL~~L~~EskRK~~~ik~A~e~al~~-Lk~~~~~~~l~~~~~~l~Pf~laC~tknaKl~~iaL~~LqkLi~~~~i~~~~l 88 (1630)
.|..|.....--.+++|..+...+.. ++......+....+.++.+++-+...++.++-..|+.+|..+.. .++...+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEYQV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HCCHHHH
T ss_conf 99999975589878599999999999974166578756799999999998669998999999999999997--5879899
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999980318898248999999999998279977-----772799999999874202467818899999999999999
Q 000345 89 KEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP-----ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVA 163 (1630)
Q Consensus 89 ~~Il~~l~~~~~~~~e~VqLKILQ~L~~l~~~~~~~-----i~g~~L~~~l~~C~~L~~~sK~~~~v~~TAaATL~QlV~ 163 (1630)
..|+..++++....++.|+....++|-.+....... ........++...+.....+.+. .++..|-.++.+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH
T ss_conf 9999999998669838899999999999999679744444117889999999999987578846-799999999999999
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=36.23 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999990892589999999999998620
Q 000345 1078 TGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSH 1113 (1630)
Q Consensus 1078 ~~W~~LL~~l~~~i~~~~~eis~a~~~~L~~lL~~~ 1113 (1630)
..+..++..+..++.....++-.+++.++..+....
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999998846998589999999999999984
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=35.78 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHHHHC
Q ss_conf 378999999999999970
Q 000345 794 STDVRAGTLKILLHVLER 811 (1630)
Q Consensus 794 ~~eir~~iL~~L~~iL~~ 811 (1630)
+.+||+...+++..+.+.
T Consensus 100 ~~~vR~~a~~~L~~l~~~ 117 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHE 117 (588)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 079999999999999997
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=35.04 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCC-------------CCCCC
Q ss_conf 09448999999999985789998435903799999998537--9911699999999999802-------------89893
Q 000345 21 RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEV--RTVKLSVIGLSCIQKLISH-------------DAVAP 85 (1630)
Q Consensus 21 K~~~ik~A~e~al~~Lk~~~~~~~l~~~~~~l~Pf~laC~t--knaKl~~iaL~~LqkLi~~-------------~~i~~ 85 (1630)
.++++|..|+..|..++. .+.+.++..++....+ .+..+-..|...+.+.+.. ..+++
T Consensus 13 ~d~~~r~~A~~~L~~~~~-------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~ 85 (876)
T 1qgr_A 13 PDRLELEAAQKFLERAAV-------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA 85 (876)
T ss_dssp SCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 898999999999999871-------6804699999999857899879999999999876055434767899864406999
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 02999999998031889824899999999999827997-7772799999999874202467--81889999999999999
Q 000345 86 SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLH-PENEDNMAQALGICLRLLENNR--SSDSVRNTAAATFRQAV 162 (1630)
Q Consensus 86 ~~l~~Il~~l~~~~~~~~e~VqLKILQ~L~~l~~~~~~-~i~g~~L~~~l~~C~~L~~~sK--~~~~v~~TAaATL~QlV 162 (1630)
.....|-+.+.++....++.+ .+..|++-.+...... ..-.+++-..+..+ . +. ++ .++..|--++..++
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l----~-~~~~~~-~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 86 NARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV----T-NPNSTE-HMKESTLEAIGYIC 158 (876)
T ss_dssp HHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHH----H-CTTCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----H-CCCCCH-HHHHHHHHHHHHHH
T ss_conf 999999999999867994788-9999999999984676225688999999987----0-889879-99999999999998
Q ss_pred H
Q ss_conf 9
Q 000345 163 A 163 (1630)
Q Consensus 163 ~ 163 (1630)
.
T Consensus 159 ~ 159 (876)
T 1qgr_A 159 Q 159 (876)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=34.27 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHC
Q ss_conf 4999999999984189--86689999999999999983010011411002799612321010046779998221799850
Q 000345 713 LWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 790 (1630)
Q Consensus 713 iW~~l~~hli~v~~~~--n~~lr~~A~d~L~~l~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~l~~ 790 (1630)
-|+-+...+++...++ +..+|..|...|..++...-.. .....++ .++..+...+.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---------------------~~~~~~~-~ll~~l~~~l~ 182 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---------------------QLQDKSN-EILTAIIQGMR 182 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG---------------------GTGGGHH-HHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH---------------------HHHHHHH-HHHHHHHHHHC
T ss_conf 2699999999986267887899999999999999818715---------------------3476799-99999999867
Q ss_pred CCC-CHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 287-378999999999999970599867891---899999934110363468999999999998314
Q 000345 791 STQ-STDVRAGTLKILLHVLERCGEKLHYSW---PSILELLRSVADASEKDLITLGFQSLRFIMNDG 853 (1630)
Q Consensus 791 ~~~-~~eir~~iL~~L~~iL~~~g~~L~sGW---~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~df 853 (1630)
... +.+||..+++++..+++...+.. ..| +.++.++.......+.++...+++++..++..+
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999989999999999999999999843-236789899999998537997899999999999999998
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=32.19 Aligned_cols=162 Identities=12% Similarity=0.120 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHC
Q ss_conf 12499999999998418986689999999999999983010011411002799612321010046779998221799850
Q 000345 711 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 790 (1630)
Q Consensus 711 ~~iW~~l~~hli~v~~~~n~~lr~~A~d~L~~l~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~l~~ 790 (1630)
...++.+...+.....+++..+|..|+..+..++..+ +.. . . ... ......++ .++..+...+.
T Consensus 514 ~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~-~~~--~------~-~~~-----~~~~~~~~-~ll~~ll~~l~ 577 (1230)
T 1u6g_C 514 HPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI-RPL--D------Q-PSS-----FDATPYIK-DLFTCTIKRLK 577 (1230)
T ss_dssp HHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-CCS--S------S-CCC-----CCCHHHHH-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCC--C------C-CCC-----CCHHHHHH-HHHHHHHHHHH
T ss_conf 8679999999999971424689999999999999871-675--5------5-653-----23278999-99999999873
Q ss_pred -CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf -2873789999999999999705998678918999999341103634689999999999983149988830399999999
Q 000345 791 -STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 869 (1630)
Q Consensus 791 -~~~~~eir~~iL~~L~~iL~~~g~~L~sGW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~~l 869 (1630)
.+.+.++|...+.|+..+....|+.+..-|+.++.++..... ++..-..+...+..|...-...-....+..++..+
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L 655 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 2699889999999999999998270324438899999998844--53059999999999981856443688899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9977066775504659998999
Q 000345 870 GAYSSQKTELNISLTAVGLLWT 891 (1630)
Q Consensus 870 ~~F~~q~~d~NISLtAi~llW~ 891 (1630)
..+.... +.++-..++..+-.
T Consensus 656 ~~~l~~~-~~~~r~~a~~al~~ 676 (1230)
T 1u6g_C 656 ASFLRKN-QRALKLGTLSALDI 676 (1230)
T ss_dssp HHHTTSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHC-CHHHHHHHHHHHHH
T ss_conf 9999867-88899999999999
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=31.03 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 25899999999999986204
Q 000345 1095 SKEVSLAAINCLQTTVLSHS 1114 (1630)
Q Consensus 1095 ~~eis~a~~~~L~~lL~~~~ 1114 (1630)
+.++..+++.++..+.....
T Consensus 663 ~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 08799999999999999887
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=1.00 E-value=1 Score=29.79 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=53.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHCCCCCH
Q ss_conf 99999999841898668999999999999998301001141100279961232101004677999822179985028737
Q 000345 716 QVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQST 795 (1630)
Q Consensus 716 ~l~~hli~v~~~~n~~lr~~A~d~L~~l~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~l~~~~~~~ 795 (1630)
-+...|+....+++..+|..|+.+|..++... .+ . ....++...+.++..+.....+.
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-----------------~~-~----~~~~~~~~~i~~L~~~l~~~~~~ 164 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-----------------TM-C----RDYVLDCNILPPLLQLFSKQNRL 164 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-----------------HH-H----HHHHHHTTCHHHHHHHTTSCCCH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-----------------HH-H----HHHHHHCCCHHHHHHHHCCCCCH
T ss_conf 98899999886998899999999999980698-----------------89-9----99999778799999986679978
Q ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999705998-----678918999999341103634689999999999983
Q 000345 796 DVRAGTLKILLHVLERCGEK-----LHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 851 (1630)
Q Consensus 796 eir~~iL~~L~~iL~~~g~~-----L~sGW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~ 851 (1630)
++++..+.++.++....+.. ...+.+.++.++. ..+..+...+..++..++.
T Consensus 165 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHC
T ss_conf 89999999999984789999879999999999999876----5878999999999999877
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=28.69 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=121.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHCCCCCHHH
Q ss_conf 99999984189866899999999999999830100114110027996123210100467799982217998502873789
Q 000345 718 VGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDV 797 (1630)
Q Consensus 718 ~~hli~v~~~~n~~lr~~A~d~L~~l~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~l~~~~~~~ei 797 (1630)
...|.+...+.+-..|.-|++.|..++...- .+. .. .+. .+...+..+.....+..|
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~---~~~---------~~----------~~~-~i~~~L~~~l~kd~~~~V 73 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHP---KLE---------NG----------EYG-ALVSALKKVITKDSNVVL 73 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS---SBC---------CC----------CCH-HHHHHHHHHHHHCSCHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCC---------CC----------CHH-HHHHHHHHHHCCCCCHHH
T ss_conf 9899966263878999999999999871288---888---------77----------799-999999998456898999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999970599867891899999934110363468999999999998314998883039999999999770667
Q 000345 798 RAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKT 877 (1630)
Q Consensus 798 r~~iL~~L~~iL~~~g~~L~sGW~~If~iL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~~l~~F~~q~~ 877 (1630)
+...+.++..+....|..+..-+..++..|-....++...+...+..++.-++... + +..+++.+......+
T Consensus 74 ~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----~---~~~ll~~l~~~l~~~- 145 (242)
T 2qk2_A 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----S---LEAQQESIVESLSNK- 145 (242)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----C---HHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----C---HHHHHHHHHHHHCCC-
T ss_conf 99999999999999866179899999999999976898899999999999999728----9---999999999988489-
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 75504659998999899988046789604675320146788655786034543102454557877821014219999999
Q 000345 878 ELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSL 957 (1630)
Q Consensus 878 d~NISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~ 957 (1630)
+-++-..+++.+-.+ +.. ..+ . ......+-.++-.
T Consensus 146 ~~~vr~~~l~~l~~~---l~~----~~~------------------------------------~--~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 146 NPSVKSETALFIARA---LTR----TQP------------------------------------T--ALNKKLLKLLTTS 180 (242)
T ss_dssp CHHHHHHHHHHHHHH---HTT----CCG------------------------------------G--GCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH---HHH----CCC------------------------------------C--CCCHHHHHHHHHH
T ss_conf 839999999999999---987----188------------------------------------7--7668999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 97720289789999999999999986159
Q 000345 958 LKKLGADERPEVRNSAIRTLFQTLGSHGQ 986 (1630)
Q Consensus 958 L~~l~~D~R~EVRn~AiqTLfril~~~G~ 986 (1630)
|..+..|+.++||..|+.++-.+....|.
T Consensus 181 l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 181 LVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 99884699858999999999999998499
Done!