BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000346
(1630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SWD1 PE=1 SV=1
Length = 426
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRL 260
L F P ++L +G G L+ +D+ RP + ++ +PITS+AW P RL
Sbjct: 27 LRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAWSPDGRL 86
Query: 261 LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 293
L+T RD S+++W + P++P + F P
Sbjct: 87 LLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3
Length = 486
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 37/195 (18%)
Query: 96 SFVLHSPE------KKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149
+F +H E + +ES +V+TE L + QP F RA T
Sbjct: 62 AFYVHDAEIVSSLGRTLESQAVETEKVLDII-YQPQAIFRV---------------RAVT 105
Query: 150 KIKTDLK---KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206
+ + L+ + ++++A P L D +R +++ T H+T Q L
Sbjct: 106 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVL---- 161
Query: 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVAWLPM-----LRL 260
+ ++ P + L G + G +L WD S + +G G S+ IT+++W P+ R
Sbjct: 162 SISWSPDGKKLASGCKNGQILLWDPSTGK--QVGRALTGHSKWITALSWEPLHANPECRY 219
Query: 261 LVTLCRDGSLQVWKT 275
+ + +DGS++VW T
Sbjct: 220 VASSSKDGSVRVWDT 234
>sp|Q8NA23|WDR31_HUMAN WD repeat-containing protein 31 OS=Homo sapiens GN=WDR31 PE=2 SV=1
Length = 367
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 141 TVEGGRAPTKIKTDLK------------KPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188
V GG+ T + + K I +AC P+ + A D ++ +++H
Sbjct: 76 CVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGS 135
Query: 189 AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV----SIERPSMIGIIQV 244
+ + + + G A P L G R TLL WDV S+ER S V
Sbjct: 136 SQPRQQLCGHAMVVTG---LAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERAS------V 186
Query: 245 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
+T + W+P ++ D +L++W +R
Sbjct: 187 SRNVVTHLCWVPREPYILQTSEDKTLRLWDSR 218
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 1426 LEQNQLPDALSCFDEA-FLAL---AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKV 1481
++ N++ +A CF +LAL A ++ A C +Y +A++ E RL +
Sbjct: 1007 VKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEE 1066
Query: 1482 QGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYA----KQMLEL 1537
A LS + S LQ H I +R AI + +++NY A ++L+L
Sbjct: 1067 DTKRAL--------ELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 1538 LLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRL-STIGYDVCDLCG 1596
S A + +L D + DP + C TL+ + S +DVC +CG
Sbjct: 1119 AESGPAAEAANRAITLGDRNPHDAFEIE-YDP-HVEMRICPKTLTPVYSGDDFDVCSVCG 1176
Query: 1597 AKF-SALSAPGCIICGMGSI 1615
A + C +C +G I
Sbjct: 1177 AVYHKGYVNEVCTVCDVGGI 1196
>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2
Length = 1421
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 1207 PGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQ 1266
P S+ L L+ QP A N T P SSAP G E P A +S AQ Q
Sbjct: 418 PASEPLN-LTQQP--ADKVNNTTNPTSSAPQGCLGNEP--FKPPPPLPVRASTSAHAQMQ 472
Query: 1267 PIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGG 1326
E + + + ++++ P G + GK P + P++ S L D G
Sbjct: 473 KFNESSYASHVSAVKLGQKSPHAGQL---------QLTKGKCCPQKRECPSSQSELSDCG 523
Query: 1327 VPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1376
Q+ Q +I S D G PQ Q P P P +P
Sbjct: 524 YGTQVENQESISTSSND--DDG--PQGKPQHQKP------PCNTKPRNKP 563
>sp|P19835|CEL_HUMAN Bile salt-activated lipase OS=Homo sapiens GN=CEL PE=1 SV=3
Length = 753
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 1316 PAADSGLP------DGGVPP--QIAPQPAIPVESIGLPDGGVPP----QSSGQTPFPYQS 1363
P DSG P D G PP A PV G D G PP SG P P
Sbjct: 617 PTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTG--DSGAPPVPPTGDSGAPPVPPTG 674
Query: 1364 QVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANP 1397
P VPP+ D A VP +GDSG P P
Sbjct: 675 DAGPPPVPPTG---DSGAPPVPPTGDSGAPPVTP 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,940,367
Number of Sequences: 539616
Number of extensions: 26495375
Number of successful extensions: 79618
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 903
Number of HSP's that attempted gapping in prelim test: 76077
Number of HSP's gapped (non-prelim): 3393
length of query: 1630
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1499
effective length of database: 120,879,763
effective search space: 181198764737
effective search space used: 181198764737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)