Query 000346
Match_columns 1630
No_of_seqs 862 out of 4422
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 16:00:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000346.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_126-130//hhsearch_pdb/000346hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 1.0 1 1 573.5 20.0 265 1242-1622 36-311 (320)
2 3mv2_A Coatomer subunit alpha; 1.0 1 1 569.1 17.3 263 1242-1622 48-320 (325)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 523.3 70.8 708 1-975 1-744 (814)
4 1vyh_C Platelet-activating fac 1.0 1 1 286.0 36.3 266 21-332 108-396 (410)
5 1nr0_A Actin interacting prote 1.0 1 1 277.8 58.4 236 23-277 20-270 (611)
6 2ynn_A Coatomer subunit beta'; 1.0 1 1 273.5 40.2 276 1-329 1-283 (304)
7 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 270.8 54.6 236 22-276 616-870 (1249)
8 1got_B GT-beta; complex (GTP-b 1.0 1 1 268.0 38.8 240 21-277 55-301 (340)
9 3iz6_a 40S ribosomal protein R 1.0 1 1 266.4 31.2 246 21-276 66-374 (380)
10 3ow8_A WD repeat-containing pr 1.0 1 1 264.6 38.0 241 15-277 30-279 (321)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=573.48 Aligned_cols=265 Identities=16% Similarity=0.235 Sum_probs=234.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53333577668899878766766899871000136410000135899854343123223354468768999999887789
Q 000346 1242 TESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSG 1321 (1630)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1630)
|++|++| +|+ +||.|++..|++.|. . ++++
T Consensus 36 ~~lLnrQ------------~Gi-------------------vnf~PLk~~F~~~y~------------~-------s~~~ 65 (320)
T 3mkr_B 36 MRLLHDQ------------VGV-------------------TQFGPYKQLFLQTYA------------R-------GRTT 65 (320)
T ss_dssp HHHHHHH------------SCB-------------------CCCGGGHHHHHHHHT------------T-------SCEE
T ss_pred HHHHHHH------------HCC-------------------CCCHHHHHHHHHHHH------------H-------HHHH
T ss_conf 9999987------------385-------------------175566999999999------------8-------7521
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99-99999988999998643336899999998889999998877888999998884322234689999999999999999
Q 000346 1322 LP-DGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASP 1400 (1630)
Q Consensus 1322 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~p~~~~~~ 1400 (1630)
+| .+ +.+||....++++++ +.
T Consensus 66 l~~~~-----------------------------------------------~~p~l~~~~~r~~~~-----------~~ 87 (320)
T 3mkr_B 66 YQALP-----------------------------------------------CLPSMYGYPNRNWKD-----------AG 87 (320)
T ss_dssp ECSST-----------------------------------------------TSCCEEECCBTTTTT-----------CC
T ss_pred CCCCC-----------------------------------------------CCCCCHHHHCCCCCC-----------CC
T ss_conf 35778-----------------------------------------------997402342178422-----------36
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988889987886046-8999999987721994799999999999----88326631588999999999999998129999
Q 000346 1401 PTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEI 1475 (1630)
Q Consensus 1401 ~~~~~~~~~~~~~~~-~~~lk~g~~~~~~gkf~ea~~~F~~il~----~~v~~~~e~~e~~~~i~ic~eY~~a~~ll~El 1475 (1630)
++.+.| .+|++++. .++||+||++||+|||+||+.+||++|| ++|++++|++|++++|++||||++||+| |+
T Consensus 88 ~~~~lP-~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~i--El 164 (320)
T 3mkr_B 88 LKNGVP-AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSM--ET 164 (320)
T ss_dssp SSSCCB-CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 545788-766689999999999999986578899999999999974501116687799999999999999999999--99
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q ss_conf 98510379971022058999999861699995467999999999999970059999999999980399-60799999999
Q 000346 1476 LRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLI 1554 (1630)
Q Consensus 1476 ~r~~~~~~~~~~~~~~~R~~ELaayft~~~Lq~~H~~l~Lr~Am~~~~K~kN~~tAa~fa~rLl~~~p-~~~~~~arkil 1554 (1630)
+||+ +++.+ ..+.+|++|||||||||+|||.|++|+||+||+++||+|||+||++||||||+++| +++++|||||+
T Consensus 165 ~Rr~-l~~~~--~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil 241 (320)
T 3mkr_B 165 ERKK-LPKET--LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKIL 241 (320)
T ss_dssp HHTT-SCCCS--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHH-CCCCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9974-36677--30488999999986648874899999999999999986019999999999986499989999999999
Q ss_pred HHHHHCCCCCCCCC--CCCCCCEEEECCCCCCCC-CCCCCCCCCCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 99963699875569--988994265066411269-99423689983004889-9988643520223788788
Q 000346 1555 DMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1622 (1630)
Q Consensus 1555 ~~ce~~~~d~~~i~--~~~~~f~iC~~t~~pIy~-~~~v~Cp~cga~y~~~~-g~~C~vC~~~~IG~~~~~~ 1622 (1630)
++|||+|+|+++|| ++ +||+||++||||||+ +++|+||||||+|+++| |++|+||++|+||+ ++.+
T Consensus 242 ~~ce~~~~da~eidyD~~-~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~-~~~G 311 (320)
T 3mkr_B 242 SACEKNPTDAYQLNYDMH-NPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGK-DVIG 311 (320)
T ss_dssp HHHHHSCCBSSCCSCCTT-SCCCBBTTTCCBCCTTSCCEECTTTCCEECGGGTTSBCTTTSSBBSSC-CCCC
T ss_pred HHHHCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 998468987631478887-863021477765669998703789888636634899888785740287-6337
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=1.00 E-value=1 Score=569.12 Aligned_cols=263 Identities=17% Similarity=0.232 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53333577668899878766766899871000136410000135899854343123223354468768999999887789
Q 000346 1242 TESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSG 1321 (1630)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1630)
|++|++| +|+ +||.|++..|++.|. . ++++
T Consensus 48 m~lLnrQ------------vGi-------------------vnf~PLk~~F~~~y~------------~-------s~~~ 77 (325)
T 3mv2_A 48 VQALSKQ------------VGV-------------------VKLEPLKKYFTNIYE------------G-------CRTY 77 (325)
T ss_dssp HHHHHHH------------HCB-------------------CCCGGGHHHHHHHHH------------H-------TEEE
T ss_pred HHHHHHH------------HCC-------------------CCCHHHHHHHHHHHH------------H-------HHHH
T ss_conf 9999987------------385-------------------175566999999999------------8-------8620
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999889999986433368999999988899999988778889999988843222346899999999999999999
Q 000346 1322 LPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPP 1401 (1630)
Q Consensus 1322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~p~~~~~~~ 1401 (1630)
+|. .|-+.+||...+++.+++ ..+
T Consensus 78 l~~---------------------------------------------~~~~lp~l~~~~~r~~~e-----------~~~ 101 (325)
T 3mv2_A 78 IPS---------------------------------------------TPCELPAQLGYVRAYDDT-----------VSE 101 (325)
T ss_dssp ECC---------------------------------------------SSTTSCCEEEECBSSCSS-----------SCG
T ss_pred CCC---------------------------------------------CCCCCCCCHHHHCCCCCC-----------CCC
T ss_conf 366---------------------------------------------777787612553077422-----------365
Q ss_pred CCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88889987886046-8999999987721994799999999999----883266315889999999999999981299999
Q 000346 1402 TSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEIL 1476 (1630)
Q Consensus 1402 ~~~~~~~~~~~~~~-~~~lk~g~~~~~~gkf~ea~~~F~~il~----~~v~~~~e~~e~~~~i~ic~eY~~a~~ll~El~ 1476 (1630)
+.+.| .+| +++. .++||+||++||+|||+||+.+||++|| ++|++++|++|++++|++||||++||+| |++
T Consensus 102 ~~~lP-~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~i--El~ 177 (325)
T 3mv2_A 102 DQILP-YVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSI--ELE 177 (325)
T ss_dssp GGCCB-CCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred CCCCC-CCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_conf 46788-878-89999999999999986588899999999999975302216677799999999999999999989--999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q ss_conf 8510379971022058999999861699995467999999999999970059999999999980399-607999999999
Q 000346 1477 RLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLID 1555 (1630)
Q Consensus 1477 r~~~~~~~~~~~~~~~R~~ELaayft~~~Lq~~H~~l~Lr~Am~~~~K~kN~~tAa~fa~rLl~~~p-~~~~~~arkil~ 1555 (1630)
||+ + ++++ ++ |++|||||||||+|||.|++|+||+||+++||+|||+||++||||||+++| +++++|||||++
T Consensus 178 Rr~-l-~~~~-~k---R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~ 251 (325)
T 3mv2_A 178 RRS-L-KEGN-TV---RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKN 251 (325)
T ss_dssp HHT-C-CTTC-HH---HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHH-C-CCCC-HH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 873-2-7542-77---8999999866488748999999999999999860099999999999865899899999999999
Q ss_pred HHHHCCCCCCCCC--CCCCCCEEEECCCCCCCC-CCCCCCCCCCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 9963699875569--988994265066411269-99423689983004889-9988643520223788788
Q 000346 1556 MCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1622 (1630)
Q Consensus 1556 ~ce~~~~d~~~i~--~~~~~f~iC~~t~~pIy~-~~~v~Cp~cga~y~~~~-g~~C~vC~~~~IG~~~~~~ 1622 (1630)
+|||+|+|+++|| ++ +||+||++||||||+ ++.|+||||||+|+++| |++|+||++|+||+ ++.+
T Consensus 252 ~ce~~~~Da~eidyD~~-~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~-~a~G 320 (325)
T 3mv2_A 252 KADSMASDAIPIDFDPY-AKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGA-PASG 320 (325)
T ss_dssp HHHTSCCCSSCCSCCTT-SCEEECTTTCCEEESSSCEEECTTTCCEEEGGGTTSBCSSSSCBBTTC-CCCC
T ss_pred HHHCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 98468987532688888-873153477502569998703788888625634899888785742188-7635
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=523.29 Aligned_cols=708 Identities=19% Similarity=0.270 Sum_probs=500.4
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEE
Q ss_conf 97642236655533578999999189999489999999989-90999988999589997179-99899999289998999
Q 000346 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVV 78 (1630)
Q Consensus 1 meW~t~q~Lelq~vgrg~~kp~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLv 78 (1630)
|++...+.+. +|.. +|++++|||+++++++++. |.|++||+.+++.+..+..| .+|++++|+|+ +++|+
T Consensus 1 m~l~~~~~~~----~h~~----~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 71 (814)
T 3mkq_A 1 MKLDIKKTFS----NRSD----RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR-KNWII 71 (814)
T ss_dssp -CCCCEEEEE----EECS----CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEE
T ss_pred CCCCCCEEEE----CCCC----CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC-CCEEE
T ss_conf 9965000450----5898----5689998899998999947998999989999167787338996889999689-99899
Q ss_pred EEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCC
Q ss_conf 99899929999789995799976899737863398199999499999999742870899998136984462660489989
Q 000346 79 AILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1630)
Q Consensus 79 SgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ 158 (1630)
+++.|+.|++||+.+++....+. ++.+....+.++++++.+++++.|+ .|++|++..+. .+...+.+|...
T Consensus 72 ~~~~dg~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~-~~~~~~~~~~~~ 142 (814)
T 3mkq_A 72 VGSDDFRIRVFNYNTGEKVVDFE-------AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNW-ALEQTFEGHEHF 142 (814)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTS-EEEEEEECCSSC
T ss_pred EEECCCEEEEEECCCCCEEEEEE-------CCCCCEEEEEEECCCCEEEEECCCC-EEEEEECCCCC-EEEEEECCCCCC
T ss_conf 99289949999899995879981-------6899789999958999899992899-89999899995-487998379986
Q ss_pred EEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCEEECCCCCEEECC--CCCEEEEEECCCEEEEEECCC
Q ss_conf 49999908-999999996797199998578729999943--8852564750089829--997999996799199998888
Q 000346 159 IVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 159 ItsIafSP-dg~lLaSgS~DGtIkIWDi~t~~~i~tL~~--~~~V~isGv~sIafSP--Dg~~LaSGS~DGtIkIWDl~t 233 (1630)
|++++|+| ++..+++++.|+.|++||+.++.....+.. ...+. +++|+| ++.++++++.|+.|++||+.+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC-----EEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEE-----EEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 8899997699999999948894999989999610698358889779-----99999779998999993899799999999
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98304999520587847999908998999998799548999332039999997543125776433461210002599621
Q 000346 234 ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAV 313 (1630)
Q Consensus 234 gk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~~~~pnk~~~~a~fFe~~~I~Sidi~~iLs~~gge~v 313 (1630)
+++ +..+.+|...|++++|+|+++++++++.||.|++|++..... ...+ .
T Consensus 218 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~----------------------~ 267 (814)
T 3mkq_A 218 KSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV------EKTL----------------------N 267 (814)
T ss_dssp TEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE------EEEE----------------------C
T ss_pred CCE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEEE----------------------E
T ss_conf 918--899847888878999859999999990899699998999947------7784----------------------0
Q ss_pred CCCCCEEEEEECCCCCC--EEEEECCCCCCCCCCCHHHHHHHCCCCCEEHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 24897278875789991--3676303568875332012113013101001220138853566755413678420235789
Q 000346 314 YPLPRVRALEVHPRLNL--AVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQL 391 (1630)
Q Consensus 314 y~l~ri~~v~~HP~~Nl--~alifa~~~~~D~~kN~~~~~~egr~ql~~vlq~~r~s~~~~~~e~l~~lgss~~~a~~~~ 391 (1630)
.+..+++++.++|.... ++.... .. ..++....+. +...+.+.|.+
T Consensus 268 ~~~~~v~~~~~~~~~~~~~~~~~~~------~~--------------~~~~~~~~~~-------~~~~~~~~g~~----- 315 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNYIASGFD------NG--------------FTVLSLGNDE-------PTLSLDPVGKL----- 315 (814)
T ss_dssp CSSSSEEEEEECTTCGGGEEEEEET------TE--------------EEEEECSCCS-------CCEEECSSSEE-----
T ss_pred CCCCCEEEEEECCCCCCEEEEEEEC------CC--------------EEEEECCCCC-------CEEEECCCCCE-----
T ss_conf 6888679999924999509999907------98--------------7999767997-------41677799878-----
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999987310578642264888742201111234566677557760565-1564323568755554422111122343334
Q 000346 392 QAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITI-FDSKHQLKDIPVCQPFHLELNFFNRENRVLH 470 (1630)
Q Consensus 392 ~~q~~~~~~~~~~~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 470 (1630)
+++...+ . ....+... .+....++
T Consensus 316 -------------------------~~~~~~~--~-----~~~~~~~~~~~~~~~~~----------------------- 340 (814)
T 3mkq_A 316 -------------------------VWSGGKN--A-----AASDIFTAVIRGNEEVE----------------------- 340 (814)
T ss_dssp -------------------------EEECCTT--S-----CTTCEEEEECCSCCCCC-----------------------
T ss_pred -------------------------EEECCCC--C-----CCEEEEEEECCCCCCCC-----------------------
T ss_conf -------------------------9977636--6-----41124665304655555-----------------------
Q ss_pred CCCEEEEECCCCEEECCCCCCCCCCHHCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCC
Q ss_conf 55111220462012012458873001012445798610035212237787379999603887203999612520001447
Q 000346 471 YPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADS 550 (1630)
Q Consensus 471 ~~~~~~~~dg~~~~~~~l~~~~~~~~~~l~~~~~g~~e~~p~~l~~sp~~~~~~v~~~~~~~~~e~~iy~~~~~~~~~~~ 550 (1630)
.+ .......+.++..+..+..+.+||++++++++++ +.+.+|. ...|+..
T Consensus 341 -------------------~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~-----~~~~i~~---~~~~~~~ 390 (814)
T 3mkq_A 341 -------------------QD---EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGD-----GEYVIYT---ALAWRNK 390 (814)
T ss_dssp -------------------SS---SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEET-----TEEEEEE---TTTTEEE
T ss_pred -------------------CC---CCCEEEEECCCCCCCCCCEEEECCCCCEEEEECC-----CEEEEEE---CCCCCCC
T ss_conf -------------------67---6201465117887657740689999998999429-----8899998---7454456
Q ss_pred C-CCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 8-988655617994799980899948996089998268630101124776323688777676643477433222334310
Q 000346 551 K-SSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRI 629 (1630)
Q Consensus 551 ~-g~~~~~~~~~f~g~~~~~~avl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 629 (1630)
. | ...+.+| .++.+.+|+.+.++. +.+++...+.. ..+ .. +....+.+
T Consensus 391 ~~~---~i~~~~~-spdg~~la~~~~~g~-v~l~~~~~~~~-------~~v-------------~~------~~~s~dg~ 439 (814)
T 3mkq_A 391 AFG---KCQDFVW-GPDSNSYALIDETGQ-IKYYKNFKEVT-------SWS-------------VP------MHSAIDRL 439 (814)
T ss_dssp EEE---ECSEEEE-CTTSSCEEEECTTCC-EEEEETTEECT-------TCC-------------CC------CSSCCCEE
T ss_pred CCC---CEEEEEE-ECCCCEEEEEECCCC-EEEEECCCCCC-------CEE-------------EC------CCCCCCCE
T ss_conf 799---5479999-479985999968983-99997777752-------439-------------73------78675523
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEE------EE
Q ss_conf 014777526884059859995112111223345641123555621147314412889996358775099999------53
Q 000346 630 FSTPIESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVL------TT 703 (1630)
Q Consensus 630 f~~p~~~~l~~~~~~~~i~~~~~~~~yd~~~~~~~~i~~~~~~~~~~~~~~~e~v~~v~W~~~~~g~~~ai~------t~ 703 (1630)
|+ +.|+.++.++.|.+ ||+.++... +.+..... .|.|+.+ |..+++. ++
T Consensus 440 ~~----~~l~~~~~d~~v~~------~d~~~~~~~---------~~~~~~~~----~v~~s~d--g~~la~~~~~~~~~~ 494 (814)
T 3mkq_A 440 FS----GALLGVKSDGFVYF------FDWDNGTLV---------RRIDVNAK----DVIWSDN--GELVMIVNTNSNGDE 494 (814)
T ss_dssp EC----SSSEEEEETTEEEE------ECTTTCCEE---------EEESSCEE----EEEECTT--SSEEEEEECCCSSCS
T ss_pred EC----CEEEEEECCCEEEE------EECCCCCEE---------EEEECCCC----EEEECCC--CCEEEEEECCCCCCC
T ss_conf 65----46999966998999------998769599---------99735888----7999699--999999986766677
Q ss_pred EEEEEECCCHHHHHHC----CCC----CCCC-------CCCEEEEEEECCEEEEECC-CCEEEEEECCCEEEEEEECCCC
Q ss_conf 1499981523566502----666----7899-------9851367671686999824-4407897479143899703784
Q 000346 704 QRVLIVSADLDILASS----STK----FDKG-------LPSFRSLLWVGPALLFSTA-TAISVLGWDGKVRNILSISMPN 767 (1630)
Q Consensus 704 ~~i~i~~~~l~~~~~~----~~~----~~~~-------~~~i~S~~W~g~~~iytT~-t~i~y~~~~G~~~~i~~~~~~~ 767 (1630)
.+++++.++.+..... ... .++. .++|+|+.|++++|||+|. +++.| +++|+.+++.+++.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~-~~~~~~~~~~~~~~~- 572 (814)
T 3mkq_A 495 ASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNY-FVGGKTYNLAHYTKE- 572 (814)
T ss_dssp CSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEE-EETTEEEEEEECSSC-
T ss_pred CEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEE-EECCEEEEEEECCCC-
T ss_conf 428999954688666664168762125022213645764278765980888999768870899-969866899998966-
Q ss_pred EEEEEEEC--CCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCC-CCCCCHHH
Q ss_conf 58999815--8299925798886778860796000210356888544348999874237999999861024-47789347
Q 000346 768 AVLVGALN--DRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD-SLRITPRS 844 (1630)
Q Consensus 768 ~~L~g~l~--~r~~l~~~~~~~~~~~~~~~i~~~ll~l~e~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 844 (1630)
+|++|+.. +|++++ +++.++....+..-++ .+..+. .. .+..+.+..+....+ .... ++.
T Consensus 573 ~~~~~~~~~~~~l~~~---------d~~~~~~~~~l~~~~~-~~~~~~----~~--~~~~~a~~~~l~~i~~~~~~-~~~ 635 (814)
T 3mkq_A 573 MYLLGYLARDNKVYLA---------DREVHVYGYEISLEVL-EFQTLT----LR--GEIEEAIENVLPNVEGKDSL-TKI 635 (814)
T ss_dssp CEEEEEEGGGTEEEEE---------CTTCCEEEEECCHHHH-HHHHHH----HT--TCHHHHHHHTGGGCCCHHHH-HHH
T ss_pred EEEEEEEECCCEEEEE---------CCCCCEEEEEECCHHH-HHHHHH----HH--CCHHHHHHHHHHCCCCHHHH-HHH
T ss_conf 7999998329999999---------2888879999890999-996998----70--79999998887428846789-999
Q ss_pred HHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 89998199984001011122687655202456888519988999988986201689999999825778899999999981
Q 000346 845 LDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKY 924 (1630)
Q Consensus 845 l~~l~~~~~~~~~lAl~l~~~~~~~~~~~rf~lAi~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~ 924 (1630)
..+|.+.+ +.|.|+++++| +.+||++|+++|+++.|+++++... ....|++||++|++.
T Consensus 636 ~~~l~~~~--~~~~a~~~~~~-----~~~~f~~~l~~~~~~~A~~~~~~~~--------------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 636 ARFLEGQE--YYEEALNISPD-----QDQKFELALKVGQLTLARDLLTDES--------------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHTT--CHHHHHHHCCC-----HHHHHHHHHHHTCHHHHHHHHTTCC--------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHCC--CHHHHEECCCC-----CCHHEEHHHHCCCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHC
T ss_conf 99998689--86896052789-----3142502145099999999998617--------------676899999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 993489999999731657898997708999999999999980698368999
Q 000346 925 GQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY 975 (1630)
Q Consensus 925 g~~~~a~~~~~~~~d~~~Ll~Ly~~~g~~~~l~~l~~~~~~~~~~~~~~~~ 975 (1630)
|++++|++||++++||++|.+||.+.+|.+++.+|++.|+..| +.+..++
T Consensus 695 ~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~-~~~~A~~ 744 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG-KFNLAFN 744 (814)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHH
T ss_conf 9989999999870271355899877299999999999999858-6679999
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=285.95 Aligned_cols=266 Identities=16% Similarity=0.188 Sum_probs=231.6
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 999189999489999999989-90999988999589997179-9989999928999899999899929999789995799
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i 98 (1630)
...|.+++|+|+++++++++. ++|++||+.+++....+.+| ..|++++|+++ +++|++|+.|++|++||+.++++..
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 776899999699998999938985999989999377888166786878998599-9999999189819999589982669
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 97689973786339819999949999999974287089999813698446266048998949999908999999996797
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG 178 (1630)
.+. ++......+.++|++..+++++.|+ +|++||+.++ .+...+.+|...|.++.++|++.++++++.|+
T Consensus 187 ~~~-------~h~~~V~~v~~~p~~~~l~s~s~D~-~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 187 TMH-------GHDHNVSSVSIMPNGDHIVSASRDK-TIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp CCC-------CCSSCEEEEEECSSSSEEEEEETTS-EEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEC-------CCCCCEEEEEEECCCCEEEEEECCC-EEEEEECCCC--CEEEEEECCCCCEEEEEECCCCCEEEEECCCC
T ss_conf 982-------8999778999967999999996899-6999989999--48999927886289999989999999991899
Q ss_pred EEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCC--------------------CCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 199998578729999943-88525647500898299--------------------979999967991999988889830
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT--------------------LEWLFVGDRRGTLLAWDVSIERPS 237 (1630)
Q Consensus 179 tIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPD--------------------g~~LaSGS~DGtIkIWDl~tgk~~ 237 (1630)
+|++||+++..+...+.. ...|. +++|+|+ +.++++|+.|++|++||+.++.+
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~- 330 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVE-----CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC- 330 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEE-----EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-
T ss_pred EEEEEECCCCCEEEEECCCCCEEE-----EEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCE-
T ss_conf 099998989743667337874589-----99985865543101212555556678888999993898499998899966-
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49995205878479999089989999987995489993320399999975431257764334612100025996212489
Q 000346 238 MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLP 317 (1630)
Q Consensus 238 ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~~~~pnk~~~~a~fFe~~~I~Sidi~~iLs~~gge~vy~l~ 317 (1630)
+..+.+|...|+++.|+|++.+|++++.|++|++||+..... ... +. ....
T Consensus 331 -~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~------~~~---------------~~-------~h~~ 381 (410)
T 1vyh_C 331 -LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC------MKT---------------LN-------AHEH 381 (410)
T ss_dssp -EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC------CEE---------------EE-------CCSS
T ss_pred -EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEE---------------EC-------CCCC
T ss_conf -999977888589999949989999995979299998999906------899---------------84-------7778
Q ss_pred CEEEEEECCCCCCEE
Q ss_conf 727887578999136
Q 000346 318 RVRALEVHPRLNLAV 332 (1630)
Q Consensus 318 ri~~v~~HP~~Nl~a 332 (1630)
.++++.|||..+.++
T Consensus 382 ~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVV 396 (410)
T ss_dssp CEEEEEECSSSSCEE
T ss_pred CEEEEEECCCCCEEE
T ss_conf 689999828999999
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=277.81 Aligned_cols=236 Identities=11% Similarity=0.119 Sum_probs=203.6
Q ss_pred CCEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EEE
Q ss_conf 918999948999999998990999988999589997179-99899999289998999998999299997899957--999
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--FVL 99 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~--~i~ 99 (1630)
.+.+++|+|+|++|++++.+.|++|++.+++....+.+| ..|++++|+|+ +++|++++.|++|++||+.+++. ...
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred CEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCEEEEE
T ss_conf 236976679999799679997999457872427376589986599999999-9689999489978994898984156676
Q ss_pred ECCCCCEEEEECCCEEEEEECCCCCEEEEEECCC---CEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCC-EEEEEE
Q ss_conf 7689973786339819999949999999974287---089999813698446266048998949999908999-999996
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR---MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAY 175 (1630)
Q Consensus 100 fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg---~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~-lLaSgS 175 (1630)
+ .++......+.++|++..+++++.+. ..|++|| .+ .+...+.+|...|.+++|+|++. .|++++
T Consensus 99 ~-------~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~--~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s 167 (611)
T 1nr0_A 99 I-------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TG--TSNGNLTGQARAMNSVDFKPSRPFRIISGS 167 (611)
T ss_dssp E-------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TC--CBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred E-------CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CC--CCCCEECCCCCCCEEEEECCCCCEEEEEEE
T ss_conf 2-------255784489998999997999989977366999963--89--976325478898369998899982999992
Q ss_pred CCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEE-------CCCC
Q ss_conf 797199998578729999943-88525647500898299979999967991999988889830499952-------0587
Q 000346 176 ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ-------VGSQ 247 (1630)
Q Consensus 176 ~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~-------gH~~ 247 (1630)
.|++|++||..++++..++.+ ...|+ +++|+|++++|++++.|++|++||..++++ +..+. +|..
T Consensus 168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~-----~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKFKSTFGEHTKFVH-----SVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSG 240 (611)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSS
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCEE-----EEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCCCCCCC
T ss_conf 898099997999757665200257169-----999979999899998999199988999828--6651366432356678
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 847999908998999998799548999332
Q 000346 248 PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 248 ~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
.|.+++|+|++.+|++++.|++|++||+..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 789999979999999990898099996888
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=273.54 Aligned_cols=276 Identities=16% Similarity=0.276 Sum_probs=233.0
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEE
Q ss_conf 97642236655533578999999189999489999999989-90999988999589997179-99899999289998999
Q 000346 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVV 78 (1630)
Q Consensus 1 meW~t~q~Lelq~vgrg~~kp~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLv 78 (1630)
|+.+..+.+. +|.. .|.+++|+|++++|++++. +.|++||+.++..+..+..+ .+|++++|+++ +++|+
T Consensus 1 ~~l~~~~~~~----~h~~----~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 71 (304)
T 2ynn_A 1 MKLDIKKTFS----NRSD----RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWII 71 (304)
T ss_dssp -CCCCEEEEE----EECS----CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEE
T ss_pred CCCEEEEEEC----CCCC----CEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECC-CCEEE
T ss_conf 9314677010----7888----5689998999987999827996999878888266776056774889999689-99899
Q ss_pred EEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCC
Q ss_conf 99899929999789995799976899737863398199999499999999742870899998136984462660489989
Q 000346 79 AILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1630)
Q Consensus 79 SgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ 158 (1630)
+++.|+.|++||+.++++...+. ++.+....+.++|+++.+++++.|+ +|++||+..+. .+...+.+|...
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~-~~~~~~~~h~~~ 142 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFE-------AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNW-ALEQTFEGHEHF 142 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSEEEEEETTS-CEEEEEGGGTT-EEEEEECCCCSC
T ss_pred EECCCCEEEEEECCCCCEEEEEE-------CCCCCEEEEEECCCCCEEEEECCCC-EEEEEECCCCC-CHHHHHCCCCCC
T ss_conf 98899979999999996789980-------7998089999959999999987998-19999899992-231010566895
Q ss_pred EEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCEEECCCCCEEECC--CCCEEEEEECCCEEEEEECCC
Q ss_conf 49999908-999999996797199998578729999943--8852564750089829--997999996799199998888
Q 000346 159 IVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 159 ItsIafSP-dg~lLaSgS~DGtIkIWDi~t~~~i~tL~~--~~~V~isGv~sIafSP--Dg~~LaSGS~DGtIkIWDl~t 233 (1630)
|.+++|+| ++..|++++.|++|++||++.......+.. ...+. .+.|+| ++.++++++.|++|++||+++
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEE-----EEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCEE-----EEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 7999988899998999918983999989999766332168747577-----89999869999999986999199996789
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98304999520587847999908998999998799548999332039999997543125776433461210002599621
Q 000346 234 ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAV 313 (1630)
Q Consensus 234 gk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~~~~pnk~~~~a~fFe~~~I~Sidi~~iLs~~gge~v 313 (1630)
+++ +.++.+|...|.++.|+|++++|++++.||+|++||+.+... ...+ .
T Consensus 218 ~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~------~~~~----------------------~ 267 (304)
T 2ynn_A 218 KSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV------EKTL----------------------N 267 (304)
T ss_dssp TEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE------EEEE----------------------C
T ss_pred CCC--CEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCE------EEEC----------------------C
T ss_conf 860--246479888889999889999899993899599998998714------5644----------------------6
Q ss_pred CCCCCEEEEEECCCCC
Q ss_conf 2489727887578999
Q 000346 314 YPLPRVRALEVHPRLN 329 (1630)
Q Consensus 314 y~l~ri~~v~~HP~~N 329 (1630)
....++|++.++|...
T Consensus 268 ~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 268 VGLERSWCIATHPTGR 283 (304)
T ss_dssp CSSSSEEEEEECTTCG
T ss_pred CCCCCEEEEEECCCCC
T ss_conf 8986089999878998
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=270.79 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=182.0
Q ss_pred CCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 99189999489999999989-90999988999589997179-99899999289998999998999299997899957999
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 22 ~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~ 99 (1630)
..|.+++|+|+++++++++. +.|++||..+++.+..+.+| ..|++++|+|+ ++++++++.|+.|++||+.+++....
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECC-CCEEEEEECCCEEEEEECCCCCEEEE
T ss_conf 64899998799998999948894999998999788876067777899999269-99899981899599987799936899
Q ss_pred ECCCCCEEEEECCCEEEEEECC--CCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 7689973786339819999949--99999997428708999981369844626604899894999990899999999679
Q 000346 100 HSPEKKMESISVDTEVHLALTP--LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 100 fspdg~~vSgs~Dgti~I~~sp--dg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~D 177 (1630)
+. ++......+.+++ +...+++++.|+ .|++||+.++ .+...+.+|...|.+++|+|++.++++++.|
T Consensus 695 ~~-------~~~~~v~~~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 695 YD-------EHSEQVNCCHFTNKSNHLLLATGSNDF-FLKLWDLNQK--ECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EE-------CCSSCEEEEEECSSSSCCEEEEEETTS-CEEEEETTSS--SEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred EC-------CCCCCEEEEEEECCCCCEEEEEEECCC-EEEEEECCCC--CHHHEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 95-------899737999984089965999980897-0999989996--3422012777978899992599989999789
Q ss_pred CEEEEEECCCCCEEEEEECC--------------CCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE-
Q ss_conf 71999985787299999438--------------852564750089829997999996799199998888983049995-
Q 000346 178 GLIRAYNIHTYAVHYTLQLD--------------NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII- 242 (1630)
Q Consensus 178 GtIkIWDi~t~~~i~tL~~~--------------~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL- 242 (1630)
|.|++||+.++.....+... ..+. +++|+|++..+++++ ++.+.+||..++.. ...+
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~--~~~~~ 836 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK-----CCSWSADGDKIIVAA-KNKVLLFDIHTSGL--LAEIH 836 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC-----CCCBCTTSSEEEEEE-TTEEEEEETTTCCE--EEEEE
T ss_pred CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEE-----EEEECCCCCEEEEEC-CCCEEEEEECCCCC--EEEEC
T ss_conf 85999968888655302023210246776445650179-----999978998899975-89599999568972--35774
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 2058784799990899899999879954899933
Q 000346 243 QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 243 ~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
.+|...|.++.|+|++.++++++.||.|++|++.
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 7877760799982788889999479869999867
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=267.97 Aligned_cols=240 Identities=17% Similarity=0.153 Sum_probs=202.6
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--
Q ss_conf 999189999489999999989-90999988999589997179-99899999289998999998999299997899957--
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~-- 96 (1630)
...|.+++|+|++++|++++. +.|++||..+++.+..+..+ ..|.+++|+|+ ++++++++.|+.+++|++.+...
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 783689998899999999818896899989998743376038861889999999-9999998089819999796688861
Q ss_pred EEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 99976899737863398199999499999999742870899998136984462660489989499999089999999967
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1630)
Q Consensus 97 ~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~ 176 (1630)
..... ..++.+....+.+.+++ .+++++.|+ .|++||+.++ .+...+.+|...|.+++|+|++.++++++.
T Consensus 134 ~~~~~-----~~~h~~~v~~~~~~~~~-~l~s~s~d~-~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 134 RVSRE-----LAGHTGYLSCCRFLDDN-QIVTSSGDT-TCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp EEEEE-----EECCSSCEEEEEEEETT-EEEEEETTS-CEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEE-----ECCCCCCEEEEEECCCC-CEEEEECCC-CEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 36778-----44877638999987999-699998999-2999989999--188997699986689999899999999938
Q ss_pred CCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEE--CCCCCEEEEE
Q ss_conf 97199998578729999943-88525647500898299979999967991999988889830499952--0587847999
Q 000346 177 DGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ--VGSQPITSVA 253 (1630)
Q Consensus 177 DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~--gH~~~VssIs 253 (1630)
|++|++||++++.+..++.+ ...|. +++|+|++.++++++.|++|++||+++++. +..+. .+...|.+++
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~-----~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDIN-----AICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVS 277 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCCEE-----EEEECCCCCEEEEECCCCCEEEEECCCCCE--EEEECCCCCCCCEEEEE
T ss_conf 99399977899816789748768779-----999949999899974898199998899918--99972688524169999
Q ss_pred EECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 908998999998799548999332
Q 000346 254 WLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 254 fSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
|+|++.++++++.|+.|++||+..
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT
T ss_pred ECCCCCEEEEECCCCEEEEEECCC
T ss_conf 989999999977999099988413
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=266.36 Aligned_cols=246 Identities=16% Similarity=0.171 Sum_probs=156.4
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--
Q ss_conf 999189999489999999989-90999988999589997179-99899999289998999998999299997899957--
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~-- 96 (1630)
...|.+++|+|++++|++|+. ++|++||..+++....+..| ..|.+++|+|+ ++++++++.|+.+++|++.+...
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCC
T ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 347789999689998999918980999878888601488559987899999899-9989995479858999897775556
Q ss_pred -----------------EEEECCCCC-E-EEEECCCEEEEEEC----------------------------CCCCEEEEE
Q ss_conf -----------------999768997-3-78633981999994----------------------------999999997
Q 000346 97 -----------------FVLHSPEKK-M-ESISVDTEVHLALT----------------------------PLQPVVFFG 129 (1630)
Q Consensus 97 -----------------~i~fspdg~-~-vSgs~Dgti~I~~s----------------------------pdg~~IaSg 129 (1630)
.+.|.|+.. . ++++.|+++.+|.. .++..++++
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 77331264068975468999964899789997799819999867795789960566788756769999206999989999
Q ss_pred ECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CC-------CEE
Q ss_conf 4287089999813698446266048998949999908999999996797199998578729999943-88-------525
Q 000346 130 FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DN-------TIK 201 (1630)
Q Consensus 130 s~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~-------~V~ 201 (1630)
+.|+ .|++||+.... .+...+.+|...|.+++|+|++.+|++++.|++|++||++++..+..+.. .. .+.
T Consensus 225 s~D~-~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 225 SCDT-TVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp ETTS-CEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred ECCC-EEEEEECCCCC-CCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 7898-69999788897-346998874887579999169996999838996999988899688986156555665568638
Q ss_pred ECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE----ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 64750089829997999996799199998888983049995----2058784799990899899999879954899933
Q 000346 202 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII----QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 202 isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL----~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
+++|+|+++++++|+.|+.|++||..+++. +..+ .+|...|++++|+|++.+|++++.|++|++|++.
T Consensus 303 -----~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 303 -----SVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----EEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred -----EEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf -----999889999899997999799998877815--789702367777845799989999989996089988999537
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=264.57 Aligned_cols=241 Identities=20% Similarity=0.204 Sum_probs=207.6
Q ss_pred CCCCCCCCCCEEEEECCC----CCEEEEEEC-CEEEEEECCCCCE--EEEECCC-CCEEEEEEECCCCCEEEEEECCCEE
Q ss_conf 578999999189999489----999999989-9099998899958--9997179-9989999928999899999899929
Q 000346 15 GRGDHKPLQPHEAAFHPN----QALIAVAIG-TYIIEFDTLTGSR--IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTI 86 (1630)
Q Consensus 15 grg~~kp~~V~sIaFSPd----G~lLaSgs~-GtI~IWDl~tg~~--i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtI 86 (1630)
+|.+ .|++++|+|+ +.+|++|+. ++|++|++.+++. ...+.+| ..|.+++|+++ +.++++++.|++|
T Consensus 30 ~H~~----~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDD----AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHI 104 (321)
T ss_dssp SSSS----CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEE
T ss_pred CCCC----CEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCE
T ss_conf 6889----6799998248888888899984999899988989974366600567788899998899-9989999379809
Q ss_pred EEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECC
Q ss_conf 99978999579997689973786339819999949999999974287089999813698446266048998949999908
Q 000346 87 RSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 87 rIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSP 166 (1630)
++||+.+++....+. .+......+.++|++..+++++.++ .|++|++..+ .....+..|...+.+++|+|
T Consensus 105 ~lWd~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~g~~dg-~v~i~~~~~~--~~~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 105 RLWDLENGKQIKSID-------AGPVDAWTLAFSPDSQYLATGTHVG-KVNIFGVESG--KKEYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp EEEETTTTEEEEEEE-------CCTTCCCCEEECTTSSEEEEECTTS-EEEEEETTTC--SEEEEEECSSSCEEEEEECT
T ss_pred EEEECCCCCEEEEEE-------CCCCCEEEEEECCCCCEEEEECCCC-CEEEEECCCC--CEEEEECCCCCEEEEEEECC
T ss_conf 999789997989993-------7985679999999999899983899-1999986799--46677438994299999989
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 999999996797199998578729999943-8852564750089829997999996799199998888983049995205
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 167 dg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH 245 (1630)
++++|++++.|+.|++||+++++++.++.+ ...|. +++|+|++++|++++.|++|++||++++.. ...+.+|
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-----~l~~spd~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h 247 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR-----SLTFSPDSQLLVTASDDGYIKIYDVQHANL--AGTLSGH 247 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC-----EEEECTTSCEEEEECTTSCEEEEETTTCCE--EEEECCC
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEE-----EEEECCCCCEEEEECCCCEEEEEECCCCCE--EEEECCC
T ss_conf 999999992898399999999909999802589601-----899948999899990998099987899632--5898688
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 87847999908998999998799548999332
Q 000346 246 SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 246 ~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
...|.+++|+|++.+|++++.|++|++||+..
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 88268999979999899981898099994999
Done!