Query 000353
Match_columns 1622
No_of_seqs 305 out of 728
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 3E-149 6E-154 1384.8 62.5 1478 1-1621 9-1588(1610)
2 PLN03076 ARF guanine nucleotid 100.0 8E-141 2E-145 1415.3 106.1 1061 4-1159 11-1513(1780)
3 KOG0929 Guanine nucleotide exc 100.0 2E-102 5E-107 1000.1 56.4 997 15-1159 12-1322(1514)
4 KOG0928 Pattern-formation prot 100.0 2.9E-73 6.2E-78 714.0 72.4 1005 25-1141 41-1334(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 7.6E-29 1.7E-33 268.5 17.7 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.8 3.8E-19 8.2E-24 230.9 23.6 733 254-1133 27-1011(1024)
7 PF09324 DUF1981: Domain of un 99.5 2.8E-14 6.1E-19 135.8 6.3 78 794-871 9-86 (86)
8 KOG1846 Uncharacterized conser 99.1 4E-08 8.6E-13 120.2 29.8 568 526-1153 640-1350(1777)
9 KOG1848 Uncharacterized conser 98.6 4.6E-07 9.9E-12 117.6 16.9 469 1096-1616 9-564 (1610)
10 PLN03076 ARF guanine nucleotid 98.4 0.012 2.7E-07 83.2 50.9 125 967-1134 1129-1254(1780)
11 KOG0930 Guanine nucleotide exc 96.2 0.0024 5.1E-08 71.0 2.1 33 440-472 153-203 (395)
12 PF01602 Adaptin_N: Adaptin N 92.0 48 0.001 42.8 30.6 146 714-895 54-201 (526)
13 KOG0931 Predicted guanine nucl 90.3 0.19 4.1E-06 60.1 2.8 30 439-468 289-339 (627)
14 PTZ00429 beta-adaptin; Provisi 85.9 1.5E+02 0.0032 40.2 30.6 139 20-170 151-300 (746)
15 KOG2023 Nuclear transport rece 84.0 1.5E+02 0.0032 38.6 28.4 157 682-873 127-285 (885)
16 KOG0929 Guanine nucleotide exc 82.9 20 0.00043 50.5 15.9 41 814-854 1185-1226(1514)
17 PTZ00429 beta-adaptin; Provisi 79.1 2.5E+02 0.0055 38.1 26.8 63 12-80 108-170 (746)
18 PF12348 CLASP_N: CLASP N term 77.2 1.2E+02 0.0026 34.4 18.1 176 717-921 27-211 (228)
19 cd00171 Sec7 Sec7 domain; Doma 74.4 2.6 5.5E-05 46.8 3.2 33 439-471 93-144 (185)
20 PF02985 HEAT: HEAT repeat; I 72.9 6.5 0.00014 29.9 4.2 28 977-1004 2-29 (31)
21 PF01602 Adaptin_N: Adaptin N 71.3 2.8E+02 0.0061 35.7 21.5 100 51-161 80-179 (526)
22 PF14500 MMS19_N: Dos2-interac 70.9 57 0.0012 38.3 13.4 75 817-894 96-171 (262)
23 PF11864 DUF3384: Domain of un 69.4 1.1E+02 0.0024 39.1 16.7 234 674-1002 208-464 (464)
24 PF01369 Sec7: Sec7 domain; I 68.6 3.6 7.7E-05 45.9 2.7 33 438-470 96-148 (190)
25 smart00222 Sec7 Sec7 domain. D 68.5 4.2 9.2E-05 45.2 3.3 33 439-471 94-146 (187)
26 PF12348 CLASP_N: CLASP N term 67.0 1E+02 0.0022 35.0 14.3 104 254-368 23-126 (228)
27 KOG1949 Uncharacterized conser 62.6 56 0.0012 42.3 11.4 109 986-1135 185-294 (1005)
28 KOG2023 Nuclear transport rece 55.8 65 0.0014 41.6 10.4 161 733-914 123-283 (885)
29 KOG2160 Armadillo/beta-catenin 55.3 1.5E+02 0.0032 36.0 12.9 115 733-875 123-242 (342)
30 PF08427 DUF1741: Domain of un 53.1 3.2E+02 0.007 31.7 14.7 67 968-1034 58-135 (237)
31 PF11640 TAN: Telomere-length 50.3 2.2E+02 0.0048 30.5 12.5 122 982-1135 11-142 (155)
32 PF02985 HEAT: HEAT repeat; I 48.0 37 0.00081 25.8 4.3 29 739-767 1-29 (31)
33 PF12717 Cnd1: non-SMC mitotic 47.5 1.5E+02 0.0032 32.6 10.8 91 731-851 18-109 (178)
34 KOG1824 TATA-binding protein-i 46.2 9.8E+02 0.021 33.0 23.9 266 813-1135 15-288 (1233)
35 PF03378 CAS_CSE1: CAS/CSE pro 43.7 7.9E+02 0.017 31.2 24.4 277 733-1117 66-352 (435)
36 KOG1824 TATA-binding protein-i 43.4 9.1E+02 0.02 33.3 17.9 151 730-897 512-662 (1233)
37 PF12719 Cnd3: Nuclear condens 42.3 4.3E+02 0.0093 31.6 14.6 123 20-170 75-206 (298)
38 KOG1993 Nuclear transport rece 42.0 8.7E+02 0.019 32.8 17.2 117 976-1138 527-649 (978)
39 KOG1241 Karyopherin (importin) 41.6 1E+03 0.022 32.0 19.3 262 747-1132 10-287 (859)
40 KOG1248 Uncharacterized conser 39.4 8.5E+02 0.018 34.3 17.3 201 748-1023 664-875 (1176)
41 PF09324 DUF1981: Domain of un 39.2 72 0.0016 30.8 5.9 53 1072-1130 33-85 (86)
42 cd00020 ARM Armadillo/beta-cat 39.2 72 0.0016 31.5 6.3 73 739-834 8-80 (120)
43 PF12830 Nipped-B_C: Sister ch 38.9 1.1E+02 0.0024 34.0 8.2 89 49-142 7-96 (187)
44 PF12755 Vac14_Fab1_bd: Vacuol 36.0 1.9E+02 0.0042 28.6 8.4 29 974-1003 67-95 (97)
45 KOG1062 Vesicle coat complex A 35.6 1.3E+03 0.028 31.3 29.7 45 863-911 293-337 (866)
46 PF12717 Cnd1: non-SMC mitotic 35.0 3.9E+02 0.0085 29.2 11.7 136 751-921 1-137 (178)
47 PF12783 Sec7_N: Guanine nucle 34.6 4.7E+02 0.01 28.3 12.1 87 681-769 8-104 (168)
48 KOG0166 Karyopherin (importin) 34.2 3.2E+02 0.0069 35.1 11.8 211 742-1032 156-374 (514)
49 PF10521 DUF2454: Protein of u 32.5 8.2E+02 0.018 29.0 14.7 160 969-1158 113-275 (282)
50 PF05004 IFRD: Interferon-rela 31.5 1E+03 0.022 28.8 19.4 156 1071-1238 57-214 (309)
51 KOG2274 Predicted importin 9 [ 28.7 1.7E+02 0.0036 39.5 8.2 93 265-364 550-645 (1005)
52 cd00020 ARM Armadillo/beta-cat 27.5 1.5E+02 0.0032 29.2 6.4 68 14-81 12-80 (120)
53 PF08167 RIX1: rRNA processing 27.4 8.2E+02 0.018 26.5 12.4 100 262-373 4-109 (165)
54 KOG1062 Vesicle coat complex A 26.9 1.7E+03 0.038 30.2 22.4 134 21-167 154-303 (866)
55 PF12719 Cnd3: Nuclear condens 26.2 9.2E+02 0.02 28.7 13.8 78 738-843 27-104 (298)
56 KOG2956 CLIP-associating prote 24.4 1.6E+03 0.034 28.7 18.6 104 799-912 327-431 (516)
57 PF08767 CRM1_C: CRM1 C termin 23.6 1.1E+03 0.024 28.5 13.8 116 803-920 72-198 (319)
58 KOG1766 Enhancer of rudimentar 23.5 1.2E+02 0.0027 29.4 4.3 49 1065-1113 14-65 (104)
59 PF12755 Vac14_Fab1_bd: Vacuol 23.2 1.7E+02 0.0038 28.9 5.6 70 802-873 27-96 (97)
60 PF08767 CRM1_C: CRM1 C termin 23.1 4.3E+02 0.0093 32.1 10.1 116 986-1137 82-198 (319)
61 PF04826 Arm_2: Armadillo-like 22.9 7.1E+02 0.015 29.2 11.5 128 9-142 12-144 (254)
62 PF13646 HEAT_2: HEAT repeats; 22.4 5E+02 0.011 24.1 8.7 54 14-77 4-58 (88)
63 PF10274 ParcG: Parkin co-regu 22.3 95 0.0021 34.3 3.9 33 49-81 79-111 (183)
64 KOG2956 CLIP-associating prote 21.1 1.4E+03 0.029 29.2 13.4 115 976-1135 288-402 (516)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-149 Score=1384.85 Aligned_cols=1478 Identities=31% Similarity=0.368 Sum_probs=1128.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCc----ccC-chhHHHHHHHHhcCCCchhHHHHHHHHH
Q 000353 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1622)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRk~~~lk~A~e~al~~Lk~~~~~~~----l~~-~~~~l~Pfllac~sk~~kl~~iaL~~lq 75 (1622)
|+++++|.+||++|++||||||++||+|||+++.+||+..+.++ +.. +++|+.||++||++||.|++.|||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999998876 444 8999999999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHH-HHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHH
Q 000353 76 KLISHDAVAPSALKEIF-SMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1622)
Q Consensus 76 kLi~~~~i~~~~l~~Il-~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA 154 (1622)
||+.|++++++...+++ +.||.+... +.+|||+||++|.++++|...+.|+.|.+++.+||+|+. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 99999999996554444 445544332 578999999999999999999999999999999999976 5777 999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCCCCCcccccccccccccccCCCCcccccccCCCCccchhchhhhhHHHHHHHH
Q 000353 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1622)
Q Consensus 155 ~ATL~Qlv~~VF~Rv~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~ 234 (1622)
+||+||+|..|||||..+++. .+..-+...+....+. +.-....+++..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence 999999999999999965431 1100000000000000 00013356788999999999
Q ss_pred HHHhhhcCCCCCcc-cccchhHHhHHHHHHHHHHhCchhhccCHHHH--HHHHHHHHHHHHHhhccccc-----------
Q 000353 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE----------- 300 (1622)
Q Consensus 235 dLc~L~~~~~p~~l-~~~~l~k~~~LELlesvL~n~~~~F~~~~~l~--~llr~~lc~lLi~~ls~n~~----------- 300 (1622)
++|.+..+..++|| .+.+.++..|+|++|+++.+....+..|.+|. ++++..+||++.|++..++.
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 68899999999999999999999999999999 99999999999997765421
Q ss_pred ------------------CCCCCCcchHH--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 000353 301 ------------------NEGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1622)
Q Consensus 301 ------------------~~~~~~~~~F~--~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l~~~~~~w~r~L~LEvl 360 (1622)
..+..++..|+ .-..+.+......|-..+-.++++|++.+.+.-..+.+.|+|.+++|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 00001111121 1123334444455667788999999999999999999999999999999
Q ss_pred HHhhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcccc-------cccchhHHHhhhc-cccCccccceeccccc
Q 000353 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1622)
Q Consensus 361 ~~l~~dp~ll~~iy~nYD~~~~~~nIf~~li~~L~~~~~~~~~-------~~~s~e~l~~~~g-~f~~k~kGi~~ll~~d 432 (1622)
++++.+++.++.+++|+||++.++++++..+..+.+++.-..+ ++...+..+.+.| .|..|.+||+|-.+.|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 9999999999999999999999999999999999999874322 1222233333334 7888889999876666
Q ss_pred cCCCcccCCchhhhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCc-hhHHHHHHHHHhhHHHHHHHH
Q 000353 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMGE-TAVLCISMVDSLWLTILDALS 511 (1622)
Q Consensus 433 ~~~~~~ll~~Ea~~I~~~~e~~a~~i~sv~~l~~~~~~~g~~~~p~~e~~~~~~~~~~-~~~~~~~m~~~~W~~lLaalS 511 (1622)
+....+++--+.-.+..+.|++..+.++++.+...+.+.+.+..+.....+.....++ .....+.|+.+.|..++++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalk 541 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALK 541 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhh
Confidence 5433333222222333333444444444444433322222211111110111111111 233456789999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccc-cccCCCCCC------------
Q 000353 512 LILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR------------ 578 (1622)
Q Consensus 512 ~~l~~s~De~~~~~lL~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~-~~~~pgs~~------------ 578 (1622)
..+..+.|+.+.+.++.+++.++..||..+-+++..+++..||+|....|........ +..+|..++
T Consensus 542 s~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfet 621 (1610)
T KOG1848|consen 542 STLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFET 621 (1610)
T ss_pred hhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEee
Confidence 9999999999999999999999999999999999999999999999754322110000 001111100
Q ss_pred --------------ccccccccCCCCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcC-CCCCcccccc
Q 000353 579 --------------SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVST 643 (1622)
Q Consensus 579 --------------~~~~~~~~~~~~l~~Kni~~lraLlnlA~~lG~~L~~SW~~IL~tlq~l~~~~~~-p~~~~~~~~~ 643 (1622)
.-+.+-...++.++.||+++.|+++++++.+-+.++.+|..++.|...+|+.... |..+.+.+.+
T Consensus 622 w~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t 701 (1610)
T KOG1848|consen 622 WDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVIT 701 (1610)
T ss_pred ccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHh
Confidence 0001112356789999999999999999999999999999999999999998775 6655554444
Q ss_pred ccccccccc----cCccchhhHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHH
Q 000353 644 ASSKLARES----SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVE 719 (1622)
Q Consensus 644 ~~p~~~~~~----~~~~~dl~il~~~~~~LFesS~~L~~~al~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~ 719 (1622)
..+..+.+. ..+++|..+++++.+++|++++.++..++..+++||.+++++.+.....
T Consensus 702 ~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~------------------ 763 (1610)
T KOG1848|consen 702 SSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETV------------------ 763 (1610)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhh------------------
Confidence 333333322 1346788889999999999999999999999999999999987544321
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHH
Q 000353 720 RMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSI 799 (1622)
Q Consensus 720 kL~ev~~~N~~R~~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 799 (1622)
+..+..|....|..+..|+.....++|+..+..|++.|++.+...+....+...+.+......+...+...+..-
T Consensus 764 -----~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es 838 (1610)
T KOG1848|consen 764 -----CSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFES 838 (1610)
T ss_pred -----ccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhh
Confidence 123345777777777777777777777777777777777777777666554433333333333332222333344
Q ss_pred HHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHhccC
Q 000353 800 ECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGL 876 (1622)
Q Consensus 800 q~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~---~~~~lv~~aF~~LqlI~~dfl 876 (1622)
+.+++..+...+..++.+|+|...++||.+|+|+.|+.+-+||..||++|+++++. +++++|+.||++|++|++|||
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 44666666666788899999999999999999999999999999999999988764 588999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhccc
Q 000353 877 SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSN 956 (1622)
Q Consensus 877 ~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~ 956 (1622)
++||.+|+..|||++..|++|++|+||||||||+||+++||+++++. +..++.+..+ ..|+..++.
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss~ 984 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSSM 984 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhcccc
Confidence 99999999999999999999999999999999999999999998422 1111211110 011111111
Q ss_pred ccccCCCCCchhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhcc
Q 000353 957 LDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAAT 1036 (1622)
Q Consensus 957 ~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~ 1036 (1622)
+.+-..++.+|+.||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+...+..
T Consensus 985 ------~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~-- 1056 (1610)
T KOG1848|consen 985 ------KSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN-- 1056 (1610)
T ss_pred ------cchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--
Confidence 112245689999999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCC
Q 000353 1037 SSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNG 1116 (1622)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~ 1116 (1622)
.+||+++++ ||||.||.+++++|++|+|..||..|..+.+|.+.|+.+|+|+.++....
T Consensus 1057 --~~ewngkei-------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~ 1115 (1610)
T KOG1848|consen 1057 --VSEWNGKEI-------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDI 1115 (1610)
T ss_pred --hhhhcchhH-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC
Confidence 356776653 59999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhcCCCCCChh---HHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHH--HHHhhCC
Q 000353 1117 SKEVSLAAINCLQTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFD 1191 (1622)
Q Consensus 1117 ~~els~a~~~sL~~lL~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~~ 1191 (1622)
+.+++.++++|||+++......|+++-. ....++..|+.+++.++.+..+...++.||.+++|+..|+ .+++.+.
T Consensus 1116 s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~ 1195 (1610)
T KOG1848|consen 1116 SPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFG 1195 (1610)
T ss_pred ChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchh
Confidence 9999999999999999999998888776 5667778888888777766666678899999999998888 4556777
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHcccCCCCCCC--CcCC
Q 000353 1192 DRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKE 1269 (1622)
Q Consensus 1192 ~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~ 1269 (1622)
.+.++..+..++.++.||.++. +..|..+ ||+|.+|++.++.+-++. ...+|..++.....+.+.+|.-. ++..
T Consensus 1196 ~e~~~~slll~~kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~ 1271 (1610)
T KOG1848|consen 1196 IEEIKDSLLLVRKAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL 1271 (1610)
T ss_pred HHHHHHHHHHhhhccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc
Confidence 8999999999999999998776 8888766 889999999999998843 45666677777677776666322 1111
Q ss_pred CCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhhhhhHH
Q 000353 1270 DEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPE 1349 (1622)
Q Consensus 1270 ~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 1349 (1622)
+++. +..-.++-|.. ..+ ..-...+.-++++.++-....+++++.+.++--+++
T Consensus 1272 -~~g~------------~~~e~~~das~----etl---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~e 1325 (1610)
T KOG1848|consen 1272 -GPGL------------PKEEKTIDASL----ETL---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLE 1325 (1610)
T ss_pred -CCCC------------chhhhcccchh----hhh---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHH
Confidence 0000 00000000000 000 000112333888888877777888888877766666
Q ss_pred HHHhhccccccc-CCCCCCcchHHHHHHHHHHHHhhhhhHhhh-----hcccccCChHHHHhhHHHHHHHhhhhhcccCC
Q 000353 1350 IIQNLGRCMTTR-RDNPDSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYCG 1423 (1622)
Q Consensus 1350 i~~~l~~~~~~k-~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~~ 1423 (1622)
...-+.+++-+. +++|+.|+|++|..+|++..-.+....... ....+.+...+...+|++..|++++++.++|+
T Consensus 1326 v~~rlkr~~~t~~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd 1405 (1610)
T KOG1848|consen 1326 VPMRLKRRCPTASRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCD 1405 (1610)
T ss_pred HHHHHHHHcccccccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcc
Confidence 666666554444 888999999999999999887765443221 00001123345567899999999999999988
Q ss_pred -C--CCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHHhhhhHHhhhhccCCCCCCCccccccCccchhh--
Q 000353 1424 -R--ALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK-- 1498 (1622)
Q Consensus 1424 -~--~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~r~r-- 1498 (1622)
+ +..+..+++.... .+|.+++++++.+++.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..|
T Consensus 1406 ~e~~~~ksl~l~a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~ 1483 (1610)
T KOG1848|consen 1406 FENSSLKSLHLLAKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFR 1483 (1610)
T ss_pred cccchhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHH
Confidence 3 2344556667888 999999999999999999999999999999999999999988 77777777777777666
Q ss_pred hHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHhhccc
Q 000353 1499 FSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKI 1578 (1622)
Q Consensus 1499 ~a~~c~d~Lf~l~~~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~vL~~l~~L~~ 1578 (1622)
.+|.||+.||+.... ..+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++|++|..|..
T Consensus 1484 la~~Cf~~ll~ds~s-----~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~ 1558 (1610)
T KOG1848|consen 1484 LAVDCFSILLDDSNS-----SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPS 1558 (1610)
T ss_pred HHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 566699999987753 123489999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCCcccccccccCcCCCcccchhhhccchhhhhcc
Q 000353 1579 HPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS 1621 (1622)
Q Consensus 1579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~ 1621 (1622)
... .+|.+ . +..++.||..|+|.+|+++.+
T Consensus 1559 ~L~------~np~l------~-n~~~~~hl~~lsPs~~~~~p~ 1588 (1610)
T KOG1848|consen 1559 LLY------SNPIL------Y-NLRKAYHLTNLSPSATSLNPA 1588 (1610)
T ss_pred ccc------cCchh------h-hHHHHHHHHhccHHHHhhhhh
Confidence 832 22221 1 267899999999999998754
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=8.3e-141 Score=1415.28 Aligned_cols=1061 Identities=21% Similarity=0.328 Sum_probs=817.7
Q ss_pred HHHHHHHHHHHHHHH-hhcChhHHHHHHHHHHHHhCCCCCC--------------cc--------------cCchhHHHH
Q 000353 4 MAVLESDLRALSAEA-RRRYPAVKDGAEHAILKLRSLSSPS--------------EL--------------AQSEDILRI 54 (1622)
Q Consensus 4 ~~~L~~dL~~L~~Es-kRk~~~lk~A~e~al~~Lk~~~~~~--------------~l--------------~~~~~~l~P 54 (1622)
-.++.+-|..+++.. .|||+++|+||+++++.||...... .+ .+++.++.|
T Consensus 11 ~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 90 (1780)
T PLN03076 11 GKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILSP 90 (1780)
T ss_pred hHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHHH
Confidence 357888899988332 4789999999999999999764320 01 256779999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCCCc----------chHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCC
Q 000353 55 FLMACEVRTVKLSVIGLSCIQKLISHDAVAP----------SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP 124 (1622)
Q Consensus 55 fllac~sk~~kl~~iaL~~lqkLi~~~~i~~----------~~l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~ 124 (1622)
|.+||+||++||+.+||+||||||+|++|.. ..++.+++++|+|.+.+||.|||||||+|+++++++.+.
T Consensus 91 l~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~~ 170 (1780)
T PLN03076 91 LINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSLR 170 (1780)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999999999999922 458899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHhhhhhhcc-CCCCCC---------C-CCCCcccccccc
Q 000353 125 ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LPMGKF---------G-SGAHITRTNSVT 193 (1622)
Q Consensus 125 ~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~Rv~~ed~-~~~~~~---------~-~~~~~~~~~~~~ 193 (1622)
+||+.|.+++++||++|..||++ ++++||+|||+|||..||+||+.... .+..+. . +....+..+.++
T Consensus 171 vhg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1780)
T PLN03076 171 IHGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQ 249 (1780)
T ss_pred eEHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccchhhhhh
Confidence 99999999999999999999999 99999999999999999999974321 100000 0 000000000000
Q ss_pred ccccc----------------------cc-----------CCC---------Cccccc---------ccCCCCccc----
Q 000353 194 GDVSR----------------------SI-----------NHS---------ESLEHE---------FASEGPSLR---- 218 (1622)
Q Consensus 194 ~~~~~----------------------~~-----------~~~---------~~~~~~---------~~~~~~~~~---- 218 (1622)
+..++ .. +.+ +..... ...+...+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1780)
T PLN03076 250 GFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGE 329 (1780)
T ss_pred hhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhccccccccccccccccccccccccccccccccc
Confidence 00000 00 000 000000 000000000
Q ss_pred -----hhc---hhhhhHHHHHHHHHHHhhhcCCCCCcc--cccch-hHHhHHHHHHHHHHhCchhhccCHHHHHHHHHHH
Q 000353 219 -----RET---LTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQI 287 (1622)
Q Consensus 219 -----~~~---~~~~~~da~~vf~dLc~L~~~~~p~~l--~~~~l-~k~~~LELlesvL~n~~~~F~~~~~l~~llr~~l 287 (1622)
... .....+|||+||+.||+|+.++.|..- +...+ +|.++||||.++|+|+|++|.+||.|++++|++|
T Consensus 330 ~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~L 409 (1780)
T PLN03076 330 VEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYL 409 (1780)
T ss_pred ccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHH
Confidence 000 012579999999999999998766332 22344 8999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH-HHhccCC--CCHHHHHHHHHHHHHhh
Q 000353 288 CSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSML-VKVTFLD--LPLWHRILVLEILRGFC 364 (1622)
Q Consensus 288 c~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~L-i~~l~~~--~~~w~r~L~LEvl~~l~ 364 (1622)
|..|+++..++ ..+.| .+++|||+.|+.+||.+||.|+|+|++.+ +++++.. .+..||+++||+|.+||
T Consensus 410 c~sL~~n~~S~-------~~~vf-~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc 481 (1780)
T PLN03076 410 CLSLLKNSASS-------LMIIF-QLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLC 481 (1780)
T ss_pred HHHHHHHhcCC-------CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 96665654331 35677 48999999999999999999999999986 4666653 34899999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcccc---------c------------------------------c
Q 000353 365 VEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF---------Q------------------------------E 405 (1622)
Q Consensus 365 ~dp~ll~~iy~nYD~~~~~~nIf~~li~~L~~~~~~~~~---------~------------------------------~ 405 (1622)
+||+++++||.|||||.++.||||+|++.|+|++++.+. + +
T Consensus 482 ~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~ 561 (1780)
T PLN03076 482 VDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPD 561 (1780)
T ss_pred hCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999974210 0 0
Q ss_pred c-----c--------------------------------------hhH----------HHhhhccccCccc-cceecccc
Q 000353 406 T-----S--------------------------------------EES----------LSAVAGMFSSKAK-GIEWILDN 431 (1622)
Q Consensus 406 ~-----s--------------------------------------~e~----------l~~~~g~f~~k~k-Gi~~ll~~ 431 (1622)
. . .+. ++.++..||.||| ||+|+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~ 641 (1780)
T PLN03076 562 PASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINA 641 (1780)
T ss_pred ccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHc
Confidence 0 0 000 1235678999987 99886432
Q ss_pred -----cc------------------------------------------CCCcc-----------cCCchhhhHHHHHHH
Q 000353 432 -----DA------------------------------------------SNAAV-----------LVASEAHSITLAIEG 453 (1622)
Q Consensus 432 -----d~------------------------------------------~~~~~-----------ll~~Ea~~I~~~~e~ 453 (1622)
|| .+.++ .+|||+|+|+|+||.
T Consensus 642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~ 721 (1780)
T PLN03076 642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEK 721 (1780)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 11 01111 289999999999999
Q ss_pred HHH------------------HHHHHHhcccc--------------------cccCCC-CCC-------------CC---
Q 000353 454 LLG------------------VVFTVATLTDE--------------------AVDVGE-LES-------------PR--- 478 (1622)
Q Consensus 454 ~a~------------------~i~sv~~l~~~--------------------~~~~g~-~~~-------------p~--- 478 (1622)
|++ ++|+++|||++ ++|+|+ ++. |-
T Consensus 722 Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~ 801 (1780)
T PLN03076 722 FAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMK 801 (1780)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCc
Confidence 997 46799999887 244443 110 00
Q ss_pred CCCCCCC--------C-------------------------------------CC---------CchhHHHHHHHHHhhH
Q 000353 479 CDYDPLP--------K-------------------------------------CM---------GETAVLCISMVDSLWL 504 (1622)
Q Consensus 479 ~e~~~~~--------~-------------------------------------~~---------~~~~~~~~~m~~~~W~ 504 (1622)
.|..... + .. ..+..++++||+.+|+
T Consensus 802 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~ 881 (1780)
T PLN03076 802 EDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWA 881 (1780)
T ss_pred ccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHH
Confidence 0000000 0 00 0123467999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCcccccc
Q 000353 505 TILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVD 584 (1622)
Q Consensus 505 ~lLaalS~~l~~s~De~~~~~lL~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~pgs~~~~~~~~ 584 (1622)
|++||+|..|+.++|+++++.||+||+.++|+||.|||+++||+|+++|||||.++. |
T Consensus 882 p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~------------~---------- 939 (1780)
T PLN03076 882 PMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS------------P---------- 939 (1780)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC------------h----------
Confidence 999999999999999999999999999999999999999999999999999998741 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcCCCCCcc-----------------cccccccc
Q 000353 585 QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQ-----------------EVSTASSK 647 (1622)
Q Consensus 585 ~~~~~~l~~Kni~~lraLlnlA~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~~-----------------~~~~~~p~ 647 (1622)
..++.||++|+|+||+||+.+||+|++||+.||+|+++++++...+.+... ......|.
T Consensus 940 ----~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~ 1015 (1780)
T PLN03076 940 ----ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPV 1015 (1780)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccc
Confidence 127899999999999999999999999999999999999999753322100 00001111
Q ss_pred cc---------------c---cc-------cCcc--ch-------hhHHH----HHHHHHHhhccCCChHHHHHHHHHHH
Q 000353 648 LA---------------R---ES-------SGQY--SD-------FNVLS----SLNSQLFESSALMHISAVKSLLSALH 689 (1622)
Q Consensus 648 ~~---------------~---~~-------~~~~--~d-------l~il~----~~~~~LFesS~~L~~~al~~~v~ALc 689 (1622)
.. + +. .+.. ++ +.++. ..++++|++|++|+++||++|++|||
T Consensus 1016 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~ 1095 (1780)
T PLN03076 1016 LKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALC 1095 (1780)
T ss_pred cccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 10 0 00 0000 11 11111 13589999999999999999999999
Q ss_pred HhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000353 690 QLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQS 765 (1622)
Q Consensus 690 ~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----~~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L 765 (1622)
++|.+|+..+. .|++|+|+||+||+++||+| |..+|+.+++||++++||+|..++.||+|+|+|+
T Consensus 1096 ~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQL 1164 (1780)
T PLN03076 1096 KVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQL 1164 (1780)
T ss_pred HhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999987642 47899999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHH
Q 000353 766 ICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSI 845 (1622)
Q Consensus 766 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~I 845 (1622)
+++|++.++ ..++.||+.||+||+.+|.++.+.+||++|++|+.+|++.++++|++||++|
T Consensus 1165 s~kfle~eE-------------------L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1165 SMKFLEREE-------------------LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred HHHhcchhh-------------------hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 999997642 3467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCC---hhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHccc
Q 000353 846 LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGL 922 (1622)
Q Consensus 846 f~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp---~~~~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~~~ 922 (1622)
|+||+.++.++++.+|+.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+|+++||.|++++.+..
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999777 699999999999999999999999999999999999998642
Q ss_pred CCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000353 923 VHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1002 (1622)
Q Consensus 923 ~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 1002 (1622)
..... +........+... ......+ .. .......++..+|+|||.+|.+++.|+|+|||++||+|||+|
T Consensus 1306 ~~~~~--~~~~~~~~~~~s~-~~~~~~~-~~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1306 LGSSS--RNKDKEAPPSSPQ-SGKDGKQ-ES-------GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred ccccc--ccccccccccccc-ccccccc-cc-------cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11000 0000000000000 0000000 00 000112334689999999999999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHH
Q 000353 1003 LGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGI 1081 (1622)
Q Consensus 1003 l~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hhsr~~~~k~W~-ET~vlal~gl 1081 (1622)
|.+||+.|++++|+.|||+||||||+.++.....+...++++.+++. .| .+.+.++|. ||+++|++|+
T Consensus 1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~l 1443 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLV 1443 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998543332211222222211 11 135679996 9999999999
Q ss_pred HHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhcC
Q 000353 1082 ARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQK 1159 (1622)
Q Consensus 1082 ~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~ 1159 (1622)
++||.+||+.|.. .-.++|+.+..|+++++..++..+.+||++++..++.+++ ++.|+.+.+.+.+++..
T Consensus 1444 vdLft~fFd~L~~------~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~--~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1444 VDLFVKFYPTVNP------LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS--DEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHH
Confidence 9999999988753 5677999999999999999999999999999999988875 99999999998877753
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-102 Score=1000.11 Aligned_cols=997 Identities=22% Similarity=0.341 Sum_probs=789.1
Q ss_pred HHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcc--------
Q 000353 15 SAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPS-------- 86 (1622)
Q Consensus 15 ~~EskRk~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~i~~~-------- 86 (1622)
..-.+|+|+.++.+|+.+++++|+.. -.+.+.+.++.||.+||+||++||+..|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~s~l~~~~~~~~~~~~~~~--~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~ 89 (1514)
T KOG0929|consen 12 ADAEWRKHSKLKKACKSALEELKANG--LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPE 89 (1514)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc--CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcc
Confidence 33446799999999999999999822 34677899999999999999999999999999999999998642
Q ss_pred --hHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHH
Q 000353 87 --ALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1622)
Q Consensus 87 --~l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~ 164 (1622)
.+..+++++|.|.+..+|.+||+++++|++.+++..+.+||+.|..++++||++|.+| + ++++||.|||.||+..
T Consensus 90 ~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~~ 166 (1514)
T KOG0929|consen 90 DLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLNI 166 (1514)
T ss_pred hhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHHH
Confidence 3799999999998877999999999999999999988999999999999999999987 6 8999999999999999
Q ss_pred HHhhhhhhccCCCCCCC------CCCCcccccc--------------cccccccc-cCCCC---------ccccc---cc
Q 000353 165 IFDHVVRAESLPMGKFG------SGAHITRTNS--------------VTGDVSRS-INHSE---------SLEHE---FA 211 (1622)
Q Consensus 165 VF~Rv~~ed~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~-~~~~~---------~~~~~---~~ 211 (1622)
||.|+..+ ..+..+.. ....+..+.. ...+.... ..+++ ..++. ..
T Consensus 167 vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1514)
T KOG0929|consen 167 VFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAESP 245 (1514)
T ss_pred HHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCccccc
Confidence 99999753 11100000 0000000000 00000000 00000 00000 00
Q ss_pred C--C-CCcc-chhchhhhhHHHHHHHHHHHhhhcCCCCCc---ccccch-hHHhHHHHHHHHHHhCchhhccCHHHHHHH
Q 000353 212 S--E-GPSL-RRETLTKAGKLGLRLLEDLTALAAGGSASW---LHVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVL 283 (1622)
Q Consensus 212 ~--~-~~~~-~~~~~~~~~~da~~vf~dLc~L~~~~~p~~---l~~~~l-~k~~~LELlesvL~n~~~~F~~~~~l~~ll 283 (1622)
. + .+.. .+..-....+||++||+.||+|+.+..+.- .+.+ + +|+++||||.++|+|++++|.++..|...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 246 ESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred ccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 0 0 0000 012224567999999999999998876642 2222 5 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhc-cC-CCCHHHHHHHHHHHH
Q 000353 284 RHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FL-DLPLWHRILVLEILR 361 (1622)
Q Consensus 284 r~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l-~~-~~~~w~r~L~LEvl~ 361 (1622)
|+++|-.|.| |+.++ -.+.| ++.+-||+.|+.+|+.++|.|+|||++.++..+ +. ..+..||..+|.++.
T Consensus 325 kqyKOGalsk----n~vS~---~~~vf-e~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~ 396 (1514)
T KOG0929|consen 325 KQYLCLALSK----NSVSN---VPMVF-ELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILT 396 (1514)
T ss_pred HHHHHHHHhh----ccccc---chHHH-HHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHh
Confidence 9999955533 22222 25677 589999999999999999999999999887654 32 347789999999999
Q ss_pred HhhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcc--------ccc-----------------------c-----
Q 000353 362 GFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------E----- 405 (1622)
Q Consensus 362 ~l~~dp~ll~~iy~nYD~~~~~~nIf~~li~~L~~~~~~~--------~~~-----------------------~----- 405 (1622)
++|.||+.++++|.||||+.+..|||+++++.+.+.+++. |.+ +
T Consensus 397 ~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~ 476 (1514)
T KOG0929|consen 397 RICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNV 476 (1514)
T ss_pred hhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccC
Confidence 9999999999999999999999999999999999999761 100 0
Q ss_pred ------------------cc---------hh---------HHHhhhccccCccc-cceecccc-----------------
Q 000353 406 ------------------TS---------EE---------SLSAVAGMFSSKAK-GIEWILDN----------------- 431 (1622)
Q Consensus 406 ------------------~s---------~e---------~l~~~~g~f~~k~k-Gi~~ll~~----------------- 431 (1622)
.+ .+ .++.+...||.||+ ||+++...
T Consensus 477 ~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t 556 (1514)
T KOG0929|consen 477 EGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGT 556 (1514)
T ss_pred CCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhc
Confidence 00 00 01224567888887 98765321
Q ss_pred ---------------ccC---------------CCcc-----------cCCchhhhHHHHHHHHHH--------------
Q 000353 432 ---------------DAS---------------NAAV-----------LVASEAHSITLAIEGLLG-------------- 456 (1622)
Q Consensus 432 ---------------d~~---------------~~~~-----------ll~~Ea~~I~~~~e~~a~-------------- 456 (1622)
|+. ++++ .+|||+|+|+|+|++|++
T Consensus 557 ~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssA 636 (1514)
T KOG0929|consen 557 EGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSA 636 (1514)
T ss_pred cCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCc
Confidence 111 2221 289999999999999996
Q ss_pred -----HHHHHHhcccc--------------------cccCCCCCCCC------CCC------------------------
Q 000353 457 -----VVFTVATLTDE--------------------AVDVGELESPR------CDY------------------------ 481 (1622)
Q Consensus 457 -----~i~sv~~l~~~--------------------~~~~g~~~~p~------~e~------------------------ 481 (1622)
++||++||||| |+|+|. +.|. +|+
T Consensus 637 DtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~-dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~ 715 (1514)
T KOG0929|consen 637 DTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGK-DLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLP 715 (1514)
T ss_pred cchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcc-cChHHHHHHHHHHhhhccccccccccccccCCCCcch
Confidence 57899999887 345553 1111 000
Q ss_pred -------CC-C------------------CCCC---------CchhHHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 000353 482 -------DP-L------------------PKCM---------GETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEI 526 (1622)
Q Consensus 482 -------~~-~------------------~~~~---------~~~~~~~~~m~~~~W~~lLaalS~~l~~s~De~~~~~l 526 (1622)
.. . ++.. -.+..++++||+.+|.|.+||++..|..++|......|
T Consensus 716 ~~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~c 795 (1514)
T KOG0929|consen 716 KLLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLC 795 (1514)
T ss_pred hhhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCcccccccc
Confidence 00 0 0000 01345779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCccccccccCCCCCCHHHHHHHHHHHHHH
Q 000353 527 LKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIA 606 (1622)
Q Consensus 527 L~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~pgs~~~~~~~~~~~~~~l~~Kni~~lraLlnlA 606 (1622)
++||+...|+++.++++..||||+++|.+||.++.. ..+..||+.++|+++.||
T Consensus 796 l~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~--------------------------~e~k~kNi~aik~l~~ia 849 (1514)
T KOG0929|consen 796 LDGFRLAISIASIFSMELGRDAFVQALARFTNLHAP--------------------------SEMKQKNIDAIKALLEIA 849 (1514)
T ss_pred ccchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------------------------HHHhHhhHHHHHHHHHHh
Confidence 999999999999999999999999999999987411 117899999999999999
Q ss_pred HhhcccccccHHHHHHHHHHHHHHhcCCCCCccc---------ccccccc--c---c---c-cccCccchhhHHHHHHHH
Q 000353 607 HRLHNVLGPSWVLVLETLAALDRAIHSPHATTQE---------VSTASSK--L---A---R-ESSGQYSDFNVLSSLNSQ 668 (1622)
Q Consensus 607 ~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~~~---------~~~~~p~--~---~---~-~~~~~~~dl~il~~~~~~ 668 (1622)
+..||+|+.+|..|+.|+.+++++...+...... .....|+ . + + +..+.......+-++ ++
T Consensus 850 ~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~ 928 (1514)
T KOG0929|consen 850 DTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DR 928 (1514)
T ss_pred hcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-hh
Confidence 9999999999999999999999996543322110 0001110 0 0 0 000111233444455 89
Q ss_pred HHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----chhhHHHHHHHHH
Q 000353 669 LFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFL 744 (1622)
Q Consensus 669 LFesS~~L~~~al~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----~~~iW~~l~~hl~ 744 (1622)
+|++|..++.+++++|++|||++|.+++..+. .|++|+++|++||+++||.| |..+|..+.+||.
T Consensus 929 Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~-----------~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~ 997 (1514)
T KOG0929|consen 929 IFTSSQRLDSEAIVDFVKALCKVSMDELLSPS-----------TPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFV 997 (1514)
T ss_pred hhcccccCCchHHHHHHHHHHHHHHHHhcCCC-----------CCCeeecccceeeeccccccchhhHHHHHHHhhhhhh
Confidence 99999999999999999999999999987642 47899999999999999998 7999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHH
Q 000353 745 ELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTL 824 (1622)
Q Consensus 745 ~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL 824 (1622)
.|++++|..+..+|+|+|+|+.++|+++++ ..++.||+.+++||+..+..+..++||++|+
T Consensus 998 ~vg~~~n~~vaifa~DslRQlsmkfle~~e-------------------l~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~ 1058 (1514)
T KOG0929|consen 998 SVGCNSNESVAIFALDSLRQLSMKFLERSE-------------------LDNFRFQKDFLRPFEHIMKRSSSAEIRELVV 1058 (1514)
T ss_pred ccccCCCCceEEEehhhhHHhhhhhcchhh-------------------hhhhhHHHhhcCcchHHhhccCcchhHHHHH
Confidence 999999999999999999999999997643 4578999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCC-Ch--hhHHHHHHHHHHHHhcCCCc
Q 000353 825 KILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSI-PT--DCIHECVDVTGAYSSQKTEL 901 (1622)
Q Consensus 825 ~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~L-p~--~~~~~lV~~L~~F~~q~~dl 901 (1622)
+|+. +++++||+.||+|++.++.+..+.++..+|+.+..|+.+++... |. ++|.+|+.|+.+|+.+....
T Consensus 1059 rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~ 1131 (1514)
T KOG0929|consen 1059 RCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFP 1131 (1514)
T ss_pred hhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCC
Confidence 9998 78999999999999999999999999999999999999998764 43 79999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHH
Q 000353 902 NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLK 981 (1622)
Q Consensus 902 NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~ 981 (1622)
|+++.||.++|.|+.++..+ . + . ++.. ++. + . ....|...|+|++.++.
T Consensus 1132 ~~s~~aI~~lr~ca~k~~e~-~-~-~-~~~~------------~~~------------~--~-~~~~~~~~wfP~l~~ls 1180 (1514)
T KOG0929|consen 1132 DDSLNAIRFLRLCALKLAEG-V-Y-N-EKLK------------VGK------------D--S-EFDVWNSGWFPMLFQLS 1180 (1514)
T ss_pred ccchHHHHHHHHHHHHhccc-c-c-h-hhcc------------ccc------------c--c-ccccceeeeehhHhhhh
Confidence 99999999999999999875 1 1 0 0000 000 0 0 11347889999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhccc
Q 000353 982 KLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHH 1061 (1622)
Q Consensus 982 ~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hh 1061 (1622)
.++.|.|++||+.|++.+|.|+..||+.|+.++|+.+|. ++||+|+.++.....
T Consensus 1181 ~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~------------------------- 1234 (1514)
T KOG0929|consen 1181 KIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDE------------------------- 1234 (1514)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccch-------------------------
Confidence 999999999999999999999999999999999999999 999999999643111
Q ss_pred ccchhhhhHH-HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCC
Q 000353 1062 SRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGN 1140 (1622)
Q Consensus 1062 sr~~~~k~W~-ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~ 1140 (1622)
++..+|. +|+++|++.++.||.+||+.+.. +...++..+..|+++++..++.++.+||.+++..++.++.
T Consensus 1235 ---~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~------lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fs 1305 (1514)
T KOG0929|consen 1235 ---SEKDEWLSTTCNHALQALVDLFTQFFKQLNN------LLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFS 1305 (1514)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccC
Confidence 1224597 99999999999999999998852 5677899999999999999999999999999999887765
Q ss_pred CChhHHHHHHHHHHHhhcC
Q 000353 1141 LPVAYLNSVLDVYEYALQK 1159 (1622)
Q Consensus 1141 ~~~~~~~~~~~~w~~~~~~ 1159 (1622)
++.|+.+.+....++..
T Consensus 1306 --e~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1306 --EEDWDEICNCILEAFKT 1322 (1514)
T ss_pred --HhhHHHHHHHHHHHHHh
Confidence 88898888877665554
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-73 Score=713.98 Aligned_cols=1005 Identities=20% Similarity=0.266 Sum_probs=704.1
Q ss_pred HHHHHHHHHHHHhCCCCC-C--cccCchhHHHHHHHHhcCC--CchhHHHHHHHHHHHHhcCCCCcc------hHHHHHH
Q 000353 25 VKDGAEHAILKLRSLSSP-S--ELAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIFS 93 (1622)
Q Consensus 25 lk~A~e~al~~Lk~~~~~-~--~l~~~~~~l~Pfllac~sk--~~kl~~iaL~~lqkLi~~~~i~~~------~l~~Il~ 93 (1622)
.++.--.++..||..-+. . +..++..||+||+..+.|. +|++|++||++++|++++++|+++ ++..+++
T Consensus 41 ~~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~ 120 (1386)
T KOG0928|consen 41 SSHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVD 120 (1386)
T ss_pred cchHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHH
Confidence 455555566666644221 2 2367889999999999988 799999999999999999999975 5899999
Q ss_pred HHHcc----c-CCCCchHHHHHHHHHHHHHcCCC-CCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHh
Q 000353 94 MLKNH----A-DMVDESVQLKTLQTILIIFQSRL-HPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFD 167 (1622)
Q Consensus 94 ~l~~~----~-~~~~e~VqLkILQ~L~~l~~s~~-~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~ 167 (1622)
|+++| + ..+||.|.|||||+|.+++.++. ..++++.++..+++||++.+.++-+++.+++|++||..|+..||.
T Consensus 121 AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFs 200 (1386)
T KOG0928|consen 121 AVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFS 200 (1386)
T ss_pred HHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHH
Confidence 99999 3 35899999999999999999985 455899999999999999885554559999999999999999999
Q ss_pred hhhhhccCCCC--------CCC-CCCC--ccccccccccccc--c----cCCCCcccccccCCC-----Cc--c------
Q 000353 168 HVVRAESLPMG--------KFG-SGAH--ITRTNSVTGDVSR--S----INHSESLEHEFASEG-----PS--L------ 217 (1622)
Q Consensus 168 Rv~~ed~~~~~--------~~~-~~~~--~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~-----~~--~------ 217 (1622)
|+++.++.... ..+ .... ........++.+. + ..++.....+.+..+ +. +
T Consensus 201 rLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~ 280 (1386)
T KOG0928|consen 201 RLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMA 280 (1386)
T ss_pred hCccccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhh
Confidence 99986521000 000 0000 0000000000000 0 000000000000000 00 0
Q ss_pred --chhchhhhhHHHHHHHHHHHhhhcCCCCCcccccchhHHhHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHhh
Q 000353 218 --RRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSL 295 (1622)
Q Consensus 218 --~~~~~~~~~~da~~vf~dLc~L~~~~~p~~l~~~~l~k~~~LELlesvL~n~~~~F~~~~~l~~llr~~lc~lLi~~l 295 (1622)
...+..|+.+ -.|.-||.|++...+ ...++.-+.++|.||++.++-+|+.|+.||.|..++++.+...++.++
T Consensus 281 ~~~~~ygip~~~---~~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~ 355 (1386)
T KOG0928|consen 281 AMDENYGIPVMK---DIFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFL 355 (1386)
T ss_pred cccccCCCceec---cchhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHH
Confidence 0011223323 346668888887665 345567899999999999999999999999999999999998887777
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhcChHHHHH
Q 000353 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLRL 372 (1622)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l---~~~~~~w~r~L~LEvl~~l~~dp~ll~~ 372 (1622)
...+..+ -.+.+.++...++..+...++.+++.+.|.|++.+..+. +...|+.||+++||.+-.+|+.|.|+.+
T Consensus 356 ~~~~k~s---~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e 432 (1386)
T KOG0928|consen 356 QIPTKMS---LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTE 432 (1386)
T ss_pred hhcccch---hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHH
Confidence 3221100 123344555556666677788899999999999888765 2334789999999999999999999999
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHHHhhc---------ccc-----------------c--ccch------h---------
Q 000353 373 LFQNFDMNPKNTNVVEGMVKALARVVSS---------VQF-----------------Q--ETSE------E--------- 409 (1622)
Q Consensus 373 iy~nYD~~~~~~nIf~~li~~L~~~~~~---------~~~-----------------~--~~s~------e--------- 409 (1622)
+|.|||||++|.|||+++++.|+|.+-- ++. + +..+ +
T Consensus 433 ~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~r 512 (1386)
T KOG0928|consen 433 MYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRSR 512 (1386)
T ss_pred HHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhccc
Confidence 9999999999999999999999997631 110 0 0000 0
Q ss_pred ----HHHhhhccccCccc-cceecccc-------cc-------------------------CCCcc--------------
Q 000353 410 ----SLSAVAGMFSSKAK-GIEWILDN-------DA-------------------------SNAAV-------------- 438 (1622)
Q Consensus 410 ----~l~~~~g~f~~k~k-Gi~~ll~~-------d~-------------------------~~~~~-------------- 438 (1622)
-+..|++.||.+|| ||+|+..+ || .|..+
T Consensus 513 k~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmr 592 (1386)
T KOG0928|consen 513 KRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMR 592 (1386)
T ss_pred hhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCc
Confidence 12347889999987 99876321 11 11111
Q ss_pred ------------cCCchhhhHHHHHHHHHH-------------------HHHHHHhccccc-------------------
Q 000353 439 ------------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEA------------------- 468 (1622)
Q Consensus 439 ------------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~l~~~~------------------- 468 (1622)
.+|||+|+|.|++|.|++ ++|++||||+++
T Consensus 593 lDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlr 672 (1386)
T KOG0928|consen 593 LDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLR 672 (1386)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcc
Confidence 289999999999999986 357999999884
Q ss_pred -ccCCCCCCCC-----------------CCCCCCCCCC----------C----------chhHHHHHHHHHhhHHHHHHH
Q 000353 469 -VDVGELESPR-----------------CDYDPLPKCM----------G----------ETAVLCISMVDSLWLTILDAL 510 (1622)
Q Consensus 469 -~~~g~~~~p~-----------------~e~~~~~~~~----------~----------~~~~~~~~m~~~~W~~lLaal 510 (1622)
+|+|+...+. .++.+.++.. + ....++++||..+|+|++||+
T Consensus 673 g~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaal 752 (1386)
T KOG0928|consen 673 GINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAAL 752 (1386)
T ss_pred cccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHH
Confidence 4444321111 0111111110 0 023578999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCccccccccCCCC
Q 000353 511 SLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIV 590 (1622)
Q Consensus 511 S~~l~~s~De~~~~~lL~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~pgs~~~~~~~~~~~~~~ 590 (1622)
+++|+.+.++++++.|+.|+++|+.+++.+|+.++.|..+.+|||||.+.+... +| +..+ ....
T Consensus 753 s~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~--------~~-----eel~---~~fg 816 (1386)
T KOG0928|consen 753 SYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS--------TP-----EELV---LAFG 816 (1386)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc--------Cc-----hHHH---HHhc
Confidence 999999999999999999999999999999999999999999999998742211 00 0000 1123
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcCCCCCc------c------ccccccc--cccc--cccC
Q 000353 591 LTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------Q------EVSTASS--KLAR--ESSG 654 (1622)
Q Consensus 591 l~~Kni~~lraLlnlA~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~------~------~~~~~~p--~~~~--~~~~ 654 (1622)
=+.|...+++|+|-+|+..|+.++.+|+.|++++.++.+....|.... . ..+.+.+ ...+ .+++
T Consensus 817 ed~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~ 896 (1386)
T KOG0928|consen 817 EDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSG 896 (1386)
T ss_pred ccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccch
Confidence 477999999999999999999999999999999999988877665411 0 0000000 0011 1110
Q ss_pred -------------------cc-chh-------hHHHHH-HHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCC
Q 000353 655 -------------------QY-SDF-------NVLSSL-NSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPT 706 (1622)
Q Consensus 655 -------------------~~-~dl-------~il~~~-~~~LFesS~~L~~~al~~~v~ALc~lS~~~l~~~~~~~~~~ 706 (1622)
+. +++ ..++.. .+++|+.++++..+++.+++++|...+...
T Consensus 897 Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~----------- 965 (1386)
T KOG0928|consen 897 LLSRFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL----------- 965 (1386)
T ss_pred HHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-----------
Confidence 00 111 222221 367999999999999999999999887543
Q ss_pred CCCCCCCcchhHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhccccccccccccC
Q 000353 707 SSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQSICAVLGSEKFQDSASRQR 783 (1622)
Q Consensus 707 ~~~~~~~~~F~L~kL~ev~~~N~~R~~~iW~~l~~hl~~v~~~~---n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~ 783 (1622)
+...+.++.|+++.|+.|.+.|.+|+..+|..+.+|+..++..+ ...+.+.|+-.+.+++.+.+..+.|-
T Consensus 966 s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l------- 1038 (1386)
T KOG0928|consen 966 SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFL------- 1038 (1386)
T ss_pred cCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhh-------
Confidence 12235567999999999999999999999999999999887654 57788999999999998887643221
Q ss_pred CCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcC--CCcHHHHHHHhhhhhccchhHH
Q 000353 784 GTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH--YSWPSILELLRSVADASEKDLI 861 (1622)
Q Consensus 784 ~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~--sgW~~If~IL~~~~~~~~~~lv 861 (1622)
.+....+++.++.- .....-..-+++-..+.+++..+..+++ .||.++|..+..++. ++..-
T Consensus 1039 --------~d~l~~sl~~ll~L------~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a~ 1102 (1386)
T KOG0928|consen 1039 --------SDELLDSLRILLKL------DPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HPEAD 1102 (1386)
T ss_pred --------hHHHhhhHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CCchh
Confidence 01122344422211 1111225567777788889888777774 699999999999887 44444
Q ss_pred HHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhh-hhhcccCCC
Q 000353 862 TLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKE-AANQDLCSV 940 (1622)
Q Consensus 862 ~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~-~~~~~~~s~ 940 (1622)
..+|..+--.+.|-.+ ++++.|..||+|...|+... ++.+-.+..-+-.+...+..-.|- ..... .
T Consensus 1103 ~~~~~~~l~~m~e~~h-l~~~~fe~~v~~~~~fve~~---------~~~~~~~l~~lde~s~sg~~~~kw~~~~~~---~ 1169 (1386)
T KOG0928|consen 1103 FLKFYRLLSKMSEASH-LTPDNFELYVDCGSTFVEAR---------VGQIMRSLSLLDEMSSSGEVLDKWEIEAKN---A 1169 (1386)
T ss_pred HHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHH---------HHHHHHhcchhhhhcccccchhHHHHHHhh---h
Confidence 4556555555556665 55667999999999998763 111111111111110000000000 00000 0
Q ss_pred ccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 000353 941 PKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLW 1020 (1622)
Q Consensus 941 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~ 1020 (1622)
. .++ +...........+|+++++.+.++|.|.|.+|||.|++.|+|++.+-++.|.+..|..||.
T Consensus 1170 ~--~~~-------------~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~ 1234 (1386)
T KOG0928|consen 1170 T--ESG-------------DESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFD 1234 (1386)
T ss_pred h--ccc-------------ccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 0 000 0000111223359999999999999999999999999999998778889999999999999
Q ss_pred HhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHH
Q 000353 1021 NYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWT 1100 (1622)
Q Consensus 1021 ~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~ 1100 (1622)
.|+||+++.+.......+. .+ ..+.+|++++.+.++++|.+++..+.+.+.|..
T Consensus 1235 ~vlfpll~~l~~~l~~~~~------------------------~~--~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~ 1288 (1386)
T KOG0928|consen 1235 LVLFPLLTDLLELLSDASE------------------------KG--NEMEVTLLLATKLLSKVFLQELQDLSSLSMFST 1288 (1386)
T ss_pred HHhHHHHHHHHHHhccccc------------------------cc--chHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865432211 00 136799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHhhhcCCCCC
Q 000353 1101 GWESLLHFVKNSILNGS-----KEVSLAAINCLQTTVLSHSTKGNL 1141 (1622)
Q Consensus 1101 ~W~~lL~~~~~~~~~~~-----~els~a~~~sL~~lL~~~~~~~~~ 1141 (1622)
+|..+|+++++++..+. .-+..++.+.+++++..|...+-+
T Consensus 1289 Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~ 1334 (1386)
T KOG0928|consen 1289 LWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEII 1334 (1386)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccc
Confidence 99999999999997655 458999999999999999876543
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=7.6e-29 Score=268.47 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHHHHhhh-----cCCCCCcccccchhHHhHHHHHHHHHHhCchhhc---cCHHHHHHHHHHHHHHHHHhh
Q 000353 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1622)
Q Consensus 224 ~~~~da~~vf~dLc~L~-----~~~~p~~l~~~~l~k~~~LELlesvL~n~~~~F~---~~~~l~~llr~~lc~lLi~~l 295 (1622)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. +||+|.+++|+++|+.|++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 6667888888888999999999999999999999 666999999999999999988
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-hccCCC-CHHHHHHHHHHHHHhhcChHHHHHH
Q 000353 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1622)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~-~l~~~~-~~w~r~L~LEvl~~l~~dp~ll~~i 373 (1622)
.++ +.+.| .+++|++++++.+|+++||.|+|+|++.+++ +++++. |.|||+++||+++++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 752 23455 4799999999999999999999999999888 677765 6899999999999999999999999
Q ss_pred HHhcCCCCCCcchH
Q 000353 374 FQNFDMNPKNTNVV 387 (1622)
Q Consensus 374 y~nYD~~~~~~nIf 387 (1622)
|+||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999997
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.82 E-value=3.8e-19 Score=230.92 Aligned_cols=733 Identities=18% Similarity=0.171 Sum_probs=479.8
Q ss_pred hHHhHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHH
Q 000353 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1622)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~ 333 (1622)
++..+|+++.++|..+. .|..+++++.|-.+.+...+ . ..|+|. ..+.+++..+..+....+.|.
T Consensus 27 ~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s----~---~~~v~~-v~~~i~~~~~~~~~~~f~~~~ 91 (1024)
T COG5307 27 SKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARS----P---LLPVFE-VGLEIIGLRLSNLPKLFKLES 91 (1024)
T ss_pred cccccccchHHHhccch-------HHHHHhcchhhhhhhhcccc----c---chhhhh-hhHHHHHHHHhhhhhhhhhcc
Confidence 77888888888887665 88899999999444332221 1 246664 578899999999999999999
Q ss_pred HHHHHHHHHhc-cCC-CCHHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCC-CcchHHHHHHHHHHHhhccc--------
Q 000353 334 EVFLSMLVKVT-FLD-LPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQ-------- 402 (1622)
Q Consensus 334 EvfLs~Li~~l-~~~-~~~w~r~L~LEvl~~l~~dp~ll~~iy~nYD~~~~-~~nIf~~li~~L~~~~~~~~-------- 402 (1622)
++|+...+..+ +.. ...-|+.+-|-..+++|..|+ ++.|++|||... ..|+.++...-+.+.+.+.+
T Consensus 92 ~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~ 169 (1024)
T COG5307 92 SVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLII 169 (1024)
T ss_pred chHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhh
Confidence 99998766654 443 345788899999999999999 899999999987 77887777766665543210
Q ss_pred -----------c---------c---------------------------------ccchh--------------------
Q 000353 403 -----------F---------Q---------------------------------ETSEE-------------------- 409 (1622)
Q Consensus 403 -----------~---------~---------------------------------~~s~e-------------------- 409 (1622)
. + ..+.|
T Consensus 170 e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d~ 249 (1024)
T COG5307 170 EQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRDS 249 (1024)
T ss_pred hhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccCh
Confidence 0 0 00000
Q ss_pred --------H------------HHhhhccccCccc-cceecccc---------------------------------c---
Q 000353 410 --------S------------LSAVAGMFSSKAK-GIEWILDN---------------------------------D--- 432 (1622)
Q Consensus 410 --------~------------l~~~~g~f~~k~k-Gi~~ll~~---------------------------------d--- 432 (1622)
. ...++..||.||+ |+..+.+. |
T Consensus 250 ~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~k 329 (1024)
T COG5307 250 SSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDK 329 (1024)
T ss_pred hhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchh
Confidence 0 0013456777776 77543221 0
Q ss_pred -------------cCCCcc-----------cCCchhhhHHHHHHHHHH-------------------HHHHHHhccccc-
Q 000353 433 -------------ASNAAV-----------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEA- 468 (1622)
Q Consensus 433 -------------~~~~~~-----------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~l~~~~- 468 (1622)
..++++ .+|||+|+|+|++|+|+. ++|+++|||||-
T Consensus 330 n~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlH 409 (1024)
T COG5307 330 NNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLH 409 (1024)
T ss_pred HHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhcccc
Confidence 012222 189999999999999986 578999999883
Q ss_pred -------------------ccCCCCCCCC-----CCC------------CCCC-----------------CCCCc--hhH
Q 000353 469 -------------------VDVGELESPR-----CDY------------DPLP-----------------KCMGE--TAV 493 (1622)
Q Consensus 469 -------------------~~~g~~~~p~-----~e~------------~~~~-----------------~~~~~--~~~ 493 (1622)
.|.|..-.+. +++ ...+ ...++ ...
T Consensus 410 Np~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~rd~~~~ 489 (1024)
T COG5307 410 NPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFGRDNQRV 489 (1024)
T ss_pred ChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhcccccccc
Confidence 2222110000 000 0000 00001 111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCC-ccccccccc
Q 000353 494 LCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVLQ 572 (1622)
Q Consensus 494 ~~~~m~~~~W~~lLaalS~~l~~s~De~~~~~lL~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~-~~~~~~~~~ 572 (1622)
..+.+|+..|+-+++++...++...++-+....+.+++++..+|..|+++.|||+|+.++++++.++... ++... ..
T Consensus 490 ~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~--~~ 567 (1024)
T COG5307 490 ADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPY--LF 567 (1024)
T ss_pred hhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccccc--cc
Confidence 2347788888888888888888877777777888999999999999999999999999999999875322 11100 00
Q ss_pred CCCCCC--ccccccccCCCCCCHHHHHHHHHHHHHHHhhcc--cc-cccHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 000353 573 SPGSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASSK 647 (1622)
Q Consensus 573 ~pgs~~--~~~~~~~~~~~~l~~Kni~~lraLlnlA~~lG~--~L-~~SW~~IL~tlq~l~~~~~~p~~~~~~~~~~~p~ 647 (1622)
.+.... ..+..+......-.-+++.+.-.++.+....|+ .+ ...|..+-..-..+........... ..|.
T Consensus 568 ~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~~ 642 (1024)
T COG5307 568 IPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSPS 642 (1024)
T ss_pred CccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----cccc
Confidence 010000 000000001122233888888888888877777 34 4478777665555543322211100 0011
Q ss_pred ccccccCccchhhHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 000353 648 LARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILV 726 (1622)
Q Consensus 648 ~~~~~~~~~~dl~il~~~~~~LFesS~~L~~-~al~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~ 726 (1622)
..+.... .+ +....++++...+.++. .++..++++++.... + .| .+++.+++.+
T Consensus 643 ~~~~~~~--~~---~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~------------~~---~~q~~v~~s~ 697 (1024)
T COG5307 643 IVKKLGS--PE---LPKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----P------------SP---PLQKEVDISK 697 (1024)
T ss_pred ccccccC--cc---ccccCcccccccccccccchHHHHHHHHHhccC-----C------------CC---CcHHhhhHHh
Confidence 0000000 01 11123567777788887 889999999997210 0 11 7899999999
Q ss_pred Hhhccc---hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHH
Q 000353 727 NNLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 803 (1622)
Q Consensus 727 ~N~~R~---~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~l 803 (1622)
.|+.++ ..+|..+....-.+..+.+..+..++.+..+++.+.+.+.++ .....|+..+
T Consensus 698 ~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee-------------------~~~~~f~~~~ 758 (1024)
T COG5307 698 KNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEE-------------------LSDFGFQIAL 758 (1024)
T ss_pred hhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChhh-------------------hcchhHHHHH
Confidence 999984 569999999999999999999999999999999887765421 2345688888
Q ss_pred hccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhh
Q 000353 804 ISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 883 (1622)
Q Consensus 804 l~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~ 883 (1622)
+.|+.........+.|++..+.|.+.++++..+.+.+| +++|+++....... . ++..++.+.- .|. -..+.++
T Consensus 759 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~--~-~~~~~s~~~~--~e~-v~s~~n~ 831 (1024)
T COG5307 759 LLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSS--T-LRYILSSLSN--DEL-VLSQENL 831 (1024)
T ss_pred hccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccc--h-hhhHHHHhcc--hhh-hhChhhH
Confidence 88988776667778999999999999999999999999 99999887653311 1 3444444432 122 2234477
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCC
Q 000353 884 IHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 963 (1622)
Q Consensus 884 ~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~ 963 (1622)
|...+-+-......+.++-+.+.++.++.........+ ...+ ... .
T Consensus 832 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k~~~--~~~---------------------~---------- 877 (1024)
T COG5307 832 FIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-KNLS--SVL---------------------S---------- 877 (1024)
T ss_pred HHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-HHHH--HHH---------------------H----------
Confidence 88888777777777788888888877765544443321 0000 000 0
Q ss_pred CCchhhhhhHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000353 964 IGMVDRDKLLFAVFSLLKKLG-ADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1042 (1622)
Q Consensus 964 ~~~~~~~~LW~~LL~~L~~L~-~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~ 1042 (1622)
.. ....+.|++.+.++.++. .-.-.|+ |..+..+++.+..++|+.+.+.-++|++....-....
T Consensus 878 ~~-~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~------ 942 (1024)
T COG5307 878 AN-SNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD------ 942 (1024)
T ss_pred hh-hhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc------
Confidence 00 112478999999998865 3355555 8899999999999999999999999988866422111
Q ss_pred cccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHH
Q 000353 1043 QGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVS 1121 (1622)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~hhsr~~~~k~W~-ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els 1121 (1622)
+. .+. ++...-.|. .+.+.++...+-+|...|+.+.. ..| .+.+...| .+.-.++.
T Consensus 943 ---~~--------~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~~c-~~~~~~~~ 999 (1024)
T COG5307 943 ---KT--------NLD----NDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLHQC-LNNCDQLG 999 (1024)
T ss_pred ---cc--------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHhh-cCcHhhhh
Confidence 00 000 234446787 78889999999999999987752 244 55555666 44446788
Q ss_pred HHHHHHHHHHHh
Q 000353 1122 LAAINCLQTTVL 1133 (1622)
Q Consensus 1122 ~a~~~sL~~lL~ 1133 (1622)
..+++++++++-
T Consensus 1000 ~~~~~~~~~~~~ 1011 (1024)
T COG5307 1000 LGAIETLEEILW 1011 (1024)
T ss_pred hhhHHHHhhhhH
Confidence 888888887653
No 7
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.49 E-value=2.8e-14 Score=135.82 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=74.1
Q ss_pred hhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 000353 794 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 871 (1622)
Q Consensus 794 ~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI 871 (1622)
..++.||+.||+||+.+|..+++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++|+.||+++++|
T Consensus 9 l~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 9 LSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 346789999999999999999999999999999999999999999999999999999999988999999999999976
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4e-08 Score=120.24 Aligned_cols=568 Identities=16% Similarity=0.177 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCC--CCCccccccc-------cCCCCCCHHHH
Q 000353 526 ILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPG--SKRSESLVDQ-------KDNIVLTPKNV 596 (1622)
Q Consensus 526 lL~gfq~~a~vag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~pg--s~~~~~~~~~-------~~~~~l~~Kni 596 (1622)
-.+|+.+.++.+|..|.....+..++-|+-+..-. ...+.+.. .+|. ..+.-..|.+ -+.+....-+.
T Consensus 640 eedglakaarlscaagvaaicasalaflAaaecrk-eeeeeREA--iepSdagmqnkcaVaQkLelegkcggifehlaet 716 (1777)
T KOG1846|consen 640 EEDGLAKAARLSCAAGVAAICASALAFLAAAECRK-EEEEEREA--IEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAET 716 (1777)
T ss_pred chhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhh--cChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 45788888888888887777776666665554321 01011100 0110 0000000000 03344577889
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhc---CCCC----C----------cccc--------cccccc----
Q 000353 597 QALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIH---SPHA----T----------TQEV--------STASSK---- 647 (1622)
Q Consensus 597 ~~lraLlnlA~~lG~~L~~SW~~IL~tlq~l~~~~~---~p~~----~----------~~~~--------~~~~p~---- 647 (1622)
.|+-+-+......|+.-.+.|+.+...-.++-.+.. ..+. . +++. -.+.|.
T Consensus 717 lCceadLrddaeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehkfe 796 (1777)
T KOG1846|consen 717 LCCEADLRDDAEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHKFE 796 (1777)
T ss_pred HHHHHHhhchhhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccChh
Confidence 999999999999999999999999887666543321 1000 0 0000 000110
Q ss_pred --------------cc-----ccc-cCccch---------------hhHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHh
Q 000353 648 --------------LA-----RES-SGQYSD---------------FNVLSSLNSQLFES-SALMHISAVKSLLSALHQL 691 (1622)
Q Consensus 648 --------------~~-----~~~-~~~~~d---------------l~il~~~~~~LFes-S~~L~~~al~~~v~ALc~l 691 (1622)
++ ++. .|...+ +-++.+-.+|+|+. +..|.--|+.+|.-++.+.
T Consensus 797 rqgredkeadkeeklsaaDlsiEgalGdapdfrggslmSghSaakaictLiakaDRffedacdeLcLmALgdfcvaiika 876 (1777)
T KOG1846|consen 797 RQGREDKEADKEEKLSAADLSIEGALGDAPDFRGGSLMSGHSAAKAICTLIAKADRFFEDACDELCLMALGDFCVAIIKA 876 (1777)
T ss_pred hcCcccccccccccccHHhhhhccccCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHh
Confidence 00 000 010011 12344445899986 5788899999999999999
Q ss_pred hHHhhcCCCCC------CCCC---CCCCCCCcchhHHHHHHHHH---Hhhcc----chhhHHHHHHHHHHH-hcCCChhH
Q 000353 692 SHQCMIGTSSS------FGPT---SSQKIGSISFSVERMISILV---NNLHR----VEPLWDQVVGHFLEL-ADNSNQHL 754 (1622)
Q Consensus 692 S~~~l~~~~~~------~~~~---~~~~~~~~~F~L~kL~ev~~---~N~~R----~~~iW~~l~~hl~~v-~~~~n~~l 754 (1622)
|...+-.+-.. ..|+ +.+ +.....-|.|+.+-.+ ....| ...+|+.+..||+++ +||....+
T Consensus 877 SenqlFhsvTaqkdihLaaPgevkstq-drksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhv 955 (1777)
T KOG1846|consen 877 SENQLFHSVTAQKDIHLAAPGEVKSTQ-DRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHV 955 (1777)
T ss_pred hhcceeeeeccceeeEeecCcccccch-hhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHH
Confidence 87654332100 0011 111 1111234556665221 12224 367899999999999 67778888
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhc-cCCcHHHHHHHHHHHHHHHHh
Q 000353 755 RNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF-STQSTDVRAGTLKILLHVLER 833 (1622)
Q Consensus 755 r~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~-~~~~~dVr~~iL~~L~~iL~~ 833 (1622)
...|+-++..++.+.|.. ..+.++ +.|...+++||+..+. .+++.|++++.+..+.++++.
T Consensus 956 SqiAaSaiadilTelLtd-----wnEpPg-------------fhFNeaLfgPFeramclElCdEdtkdQflsSigeLVes 1017 (1777)
T KOG1846|consen 956 SQIAASAIADILTELLTD-----WNEPPG-------------FHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVES 1017 (1777)
T ss_pred HHHHHHHHHHHHHHHHhc-----cCCCCC-------------cchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 888888888887777632 122232 3455577788887654 467889999999999999999
Q ss_pred cCCCcCCCcHHHHHHHhhhhhccch----hHH---------HHHHHHHHHHHhccCCCCC--hhhHHHHHHHHHHHHhcC
Q 000353 834 CGEKLHYSWPSILELLRSVADASEK----DLI---------TLGFQSLRFIMNDGLSSIP--TDCIHECVDVTGAYSSQK 898 (1622)
Q Consensus 834 ~g~~L~sgW~~If~IL~~~~~~~~~----~lv---------~~aF~~LqlI~~dfl~~Lp--~~~~~~lV~~L~~F~~q~ 898 (1622)
+++.|.+||+.+|+-|.+|...+.. .++ --+|++++--.+ ..++| .+....||-|+.+|.+.-
T Consensus 1018 cadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLn--iDnipVfanaalecimClmkflkgl 1095 (1777)
T KOG1846|consen 1018 CADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLN--IDNIPVFANAALECIMCLMKFLKGL 1095 (1777)
T ss_pred HHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhc--cCchHhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999753211 111 246777664433 23344 367889999999999865
Q ss_pred C-----------------CcchhHHHHHHHHHHHHHHHccc--CCCcchhhhhh-hcccCC---CccccCcchhhhhhcc
Q 000353 899 T-----------------ELNISLTAVGLLWTTTDFIAKGL--VHGISEEKEAA-NQDLCS---VPKQMDGEKREEKTLS 955 (1622)
Q Consensus 899 ~-----------------dlNISLtAi~llw~isD~L~~~~--~~~~~~~k~~~-~~~~~s---~~~~~~~~~~e~~~~~ 955 (1622)
. .....|.|..++-+|+..+.+-. .+++. -..+ ..+... ....++....|.--..
T Consensus 1096 eevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPi--fhlghladLprkcldqsamdeDgIEsphgp 1173 (1777)
T KOG1846|consen 1096 EEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPI--FHLGHLADLPRKCLDQSAMDEDGIESPHGP 1173 (1777)
T ss_pred cccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchh--hhhhhhhcchHHHHhhhhcccCCccCCCCC
Confidence 4 23467899999999998776531 11110 0000 000000 0000010000100000
Q ss_pred cccc-cCCCCCchhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhHHHHHHhhhhh
Q 000353 956 NLDD-QNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYVFPMLDCASHM 1033 (1622)
Q Consensus 956 ~~~~-~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g-~~ls~~~W~~~~~~VLFPLl~~l~~~ 1033 (1622)
+|-. +. ........+|..++..+.....+.-|.-...-+..+|+.|..-. .-|.+.+=-.|+.-+++|.+..-..-
T Consensus 1174 fpvledf--dddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRR 1251 (1777)
T KOG1846|consen 1174 FPVLEDF--DDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRR 1251 (1777)
T ss_pred ccccccc--cccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHH
Confidence 0000 00 01112347899999888775566666667777888888886432 23344444467788888888765421
Q ss_pred hccCCcccccccccCcCCCccchhhcccccchhhhhHH---HHHHHHHHHHHHHHHhhhhhhcccCchHH--------HH
Q 000353 1034 AATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD---ETLVLVLGGIARLLRSFFPFLANLSNFWT--------GW 1102 (1622)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~hhsr~~~~k~W~---ET~vlal~gl~~lf~~~~~~L~~l~~F~~--------~W 1102 (1622)
. +.+..-|+ .-...+++.-+.+...+...... +++.. +.
T Consensus 1252 l-----------------------------dkdesywdmakaifKhaIGaccelVidhielekh-SswddRlerdIcali 1301 (1777)
T KOG1846|consen 1252 L-----------------------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKH-SSWDDRLERDICALI 1301 (1777)
T ss_pred h-----------------------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHH
Confidence 0 11224565 24567888888888888775543 22222 11
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 000353 1103 ESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVY 1153 (1622)
Q Consensus 1103 ~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w 1153 (1622)
...++|...|....-..+..++-.|.+-+|...++++ +++.|..+..+.
T Consensus 1302 kdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemWniaccaL 1350 (1777)
T KOG1846|consen 1302 KDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMWNIACCAL 1350 (1777)
T ss_pred HHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHHHHHHHHH
Confidence 2222333333333333455566666666655444444 578887655433
No 9
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.6e-07 Score=117.59 Aligned_cols=469 Identities=16% Similarity=0.120 Sum_probs=292.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCC------------------------------------
Q 000353 1096 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG------------------------------------ 1139 (1622)
Q Consensus 1096 ~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~------------------------------------ 1139 (1622)
.+|.++|..-|+.+..-...++.+|..||-++++.+........
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 35667899999999999999999999999999998865432110
Q ss_pred ------CCC---------hhHHHHHHHHHHHhhcCCCCCC---C----CCCccchHHHHHHHHHHHHHHHhhCC--HHHH
Q 000353 1140 ------NLP---------VAYLNSVLDVYEYALQKSPNYS---D----NAAGKVKQEILHGLGELYVQAQKMFD--DRMY 1195 (1622)
Q Consensus 1140 ------~~~---------~~~~~~~~~~w~~~~~~~~~~~---~----~~~~~~~q~~l~~f~~ly~~~~~~~~--~~~~ 1195 (1622)
.++ ...|..+|.-|..+.-..+.|- . ...+.+..-++.||+-+|++.+..++ ...+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 011 2466666677764422111111 0 01123344556799999996555554 3455
Q ss_pred HHHHHHHHHHHHcccCCCCCCccccC-----CCCHHHHHHHHhccccCCC-----ccchhhHHHHHHHHHcccCCCCCCC
Q 000353 1196 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSPT-----EQLCSMWLVLLREILQYLPRSDSPL 1265 (1622)
Q Consensus 1196 ~~~l~~l~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~~-----~~~~~~~~~~~~~l~~f~~~~~~~~ 1265 (1622)
+|+. +..|-+.|+. .+.++...+ +.++.|.+.+..+.-+..+ ..++.|+|....++|.|++..+.++
T Consensus 169 rQlV--~~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLV--LLVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHH--HHHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 5543 3344444432 222222221 3444455444443333221 1456777888889998886655444
Q ss_pred CcCCCCCCCCCCCCcccccccc--cccCCCCCCCCCCcchhhhhhhccCCcccccchHH-HHHhHhHHHHHHhhh---cc
Q 000353 1266 QKKEDEEEPPSTSDNIHDVHVR--TKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1339 (1622)
Q Consensus 1266 ~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1339 (1622)
... -+...+.+ .++.-++.+. ..+++ ...++ |.+.+....|+++.. .+
T Consensus 246 ~~e-----------lLesilks~~s~~dq~qdf~--~a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLE-----------LLESILKSNASKSDQIQDFA--PAELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhh-----------hhhhhhhcchhhhHHHHHhh--HHHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 221 11111100 0000000000 00000 01222 666666666665444 46
Q ss_pred hhhhhhhhHHHHHhhcc-------cccccCCCCCCcchHHHHHHHHHHHHhhhhhHhhhhcccccCChHHHHhhHHHHHH
Q 000353 1340 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1412 (1622)
Q Consensus 1340 ~~~~~~~~~~i~~~l~~-------~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1412 (1622)
.+.+.+.+-.+|+.+.. |-..+|.|+....|+++....+.+...++|....-.. --.+..+|.+..-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~------~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLAS------LLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHH------HhhhhhcCcccCc
Confidence 77677776777777666 9999999999999999999999999999987554331 1346778888888
Q ss_pred HhhhhhcccCCCCCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHHhh----hhHHhhhhccCCCCCCCccc
Q 000353 1413 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1488 (1622)
Q Consensus 1413 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1488 (1622)
.+..|++... .++.+.++-.+. +.+.++..+.+.+-.+++|..+-++..++. .+...+++++.-.|...+..
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 8888888863 334555556666 667788889999999999998888887665 66677776665444322211
Q ss_pred cccCccchhhhHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHH
Q 000353 1489 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1568 (1622)
Q Consensus 1489 ~~~~~~~r~r~a~~c~d~Lf~l~~~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~ 1568 (1622)
-+.--..|+.+...|+..|-++..... ...++.....+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111222357788888888877665321 23345666789999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccccCCCCCcccccccccCcCCCcccchhhhccchh
Q 000353 1569 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFC 1616 (1622)
Q Consensus 1569 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~ 1616 (1622)
+- .+..++.-. ..+++..+...+...+.+++-.||.+.
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlt 564 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLT 564 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHH
Confidence 65 333332211 112223333556677899999999886
No 10
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.38 E-value=0.012 Score=83.23 Aligned_cols=125 Identities=13% Similarity=0.212 Sum_probs=86.2
Q ss_pred hhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH-HhHHHHHHhhhhhhccCCccccccc
Q 000353 967 VDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLW-NYVFPMLDCASHMAATSSKDEWQGK 1045 (1622)
Q Consensus 967 ~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~-~VLFPLl~~l~~~~~~~~~~~~~~~ 1045 (1622)
..|..+|-.+-.-+..++.++-.+||--|+..|-+.-..+-.. .+.++.=|. +.|-|+..-+.+.
T Consensus 1129 l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s------------ 1194 (1780)
T PLN03076 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKS------------ 1194 (1780)
T ss_pred eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhc------------
Confidence 3588999877777888877777899999999875554433321 111222233 4455655444311
Q ss_pred ccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 000353 1046 ELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAI 1125 (1622)
Q Consensus 1046 ~~~~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~ 1125 (1622)
.+ .|.+-+++..+..+...+.+.+.. .|..++..|...+..+...+...||
T Consensus 1195 -----------------~~------~eVrE~ILeCv~qmI~s~~~nIkS------GWktIF~VLs~aa~d~~e~iV~lAF 1245 (1780)
T PLN03076 1195 -----------------NA------VEIRELIIRCVSQMVLSRVNNVKS------GWKSMFMVFTTAAYDDHKNIVLLAF 1245 (1780)
T ss_pred -----------------Cc------hHHHHHHHHHHHHHHHHHHhhhhc------CcHHHHHHHHHHHhCccHHHHHHHH
Confidence 11 145557788888888888776654 6999999999888888889999999
Q ss_pred HHHHHHHhh
Q 000353 1126 NCLQTTVLS 1134 (1622)
Q Consensus 1126 ~sL~~lL~~ 1134 (1622)
+.++.++..
T Consensus 1246 etl~~I~~d 1254 (1780)
T PLN03076 1246 EIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHh
Confidence 999887654
No 11
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.0024 Score=71.02 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCchhhhHHHHHHHHHH------------------HHHHHHhcccccccCC
Q 000353 440 VASEAHSITLAIEGLLG------------------VVFTVATLTDEAVDVG 472 (1622)
Q Consensus 440 l~~Ea~~I~~~~e~~a~------------------~i~sv~~l~~~~~~~g 472 (1622)
+|||+|+|+|+||.||. +.|++||+|+.-.|..
T Consensus 153 LPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpN 203 (395)
T KOG0930|consen 153 LPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPN 203 (395)
T ss_pred CCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCC
Confidence 89999999999999997 3579999998754443
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.97 E-value=48 Score=42.81 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=100.9
Q ss_pred cchhHHHHHHHHHHhhcc-chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhc
Q 000353 714 ISFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESR 792 (1622)
Q Consensus 714 ~~F~L~kL~ev~~~N~~R-~~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~ 792 (1622)
..+.+.|++-++...+.. .....-.+++++..=..|+|+.+|..|...|..+....+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~---------------------- 111 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM---------------------- 111 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH----------------------
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch----------------------
Confidence 367888999888776664 567888999999998899999999999999998653221
Q ss_pred chhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHH-
Q 000353 793 HGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI- 871 (1622)
Q Consensus 793 ~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI- 871 (1622)
.+ .+..++..+. .+.++.||+..+-|+.++.+.+.+.+..+| +..+.....+.+..++..|+..+.-|
T Consensus 112 ------~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~ 180 (526)
T PF01602_consen 112 ------AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIK 180 (526)
T ss_dssp ------HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHH
T ss_pred ------hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHc
Confidence 11 2333444443 356779999999999999999888776554 45554444566777888888888877
Q ss_pred HhccCCCCChhhHHHHHHHHHHHH
Q 000353 872 MNDGLSSIPTDCIHECVDVTGAYS 895 (1622)
Q Consensus 872 ~~dfl~~Lp~~~~~~lV~~L~~F~ 895 (1622)
.++.... +.+..++..|.+..
T Consensus 181 ~~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 181 CNDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp CTHHHHT---THHHHHHHHHHHHH
T ss_pred cCcchhh---hhHHHHHHHhhhcc
Confidence 3222100 23445555555443
No 13
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=0.19 Score=60.06 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.1
Q ss_pred cCCchhhhHHHHHHHHHH---------------------HHHHHHhccccc
Q 000353 439 LVASEAHSITLAIEGLLG---------------------VVFTVATLTDEA 468 (1622)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~---------------------~i~sv~~l~~~~ 468 (1622)
.++||||+|.|++|.|+- ++|+||+||++-
T Consensus 289 rvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDm 339 (627)
T KOG0931|consen 289 RVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDM 339 (627)
T ss_pred ecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccc
Confidence 489999999999999985 467999999873
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=85.91 E-value=1.5e+02 Score=40.22 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=66.7
Q ss_pred hcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC----CCcchHHHHHHHH
Q 000353 20 RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA----VAPSALKEIFSML 95 (1622)
Q Consensus 20 Rk~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~----i~~~~l~~Il~~l 95 (1622)
-++|-||.+|=-++.+|=... .++.....++.=+.-....+++-++.-|+.+|..+-..+- +....+..+++.|
T Consensus 151 D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL 228 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Confidence 356677766666665553221 1222222222222222345677777777777777755431 1112234444444
Q ss_pred HcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHH-------HHHHHHHHhh
Q 000353 96 KNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATF-------RQAVALIFDH 168 (1622)
Q Consensus 96 ~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL-------~Qlv~~VF~R 168 (1622)
.+| +|--|+.||++|.... + -..+.....+.......+ ++|+.||-.++.+-+ .+++..++.|
T Consensus 229 ~e~----~EW~Qi~IL~lL~~y~--P---~~~~e~~~il~~l~~~Lq-~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 229 PEC----NEWGQLYILELLAAQR--P---SDKESAETLLTRVLPRMS-HQNPAVVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred hcC----ChHHHHHHHHHHHhcC--C---CCcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 444 3456888888884311 1 112223344443333323 344536666666533 2444455555
Q ss_pred hh
Q 000353 169 VV 170 (1622)
Q Consensus 169 v~ 170 (1622)
+.
T Consensus 299 l~ 300 (746)
T PTZ00429 299 VN 300 (746)
T ss_pred HH
Confidence 53
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=1.5e+02 Score=38.61 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc--chhhHHHHHHHHHHHhcCCChhHHHHHH
Q 000353 682 KSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIAL 759 (1622)
Q Consensus 682 ~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R--~~~iW~~l~~hl~~v~~~~n~~lr~~Av 759 (1622)
-+++.+||++-..+ .. +..++ ..-+|+|+.|=+-.-+++ .++--+.+...|++...|+++.+|..|+
T Consensus 127 pelLp~L~~~L~s~----d~------n~~Eg-A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~ 195 (885)
T KOG2023|consen 127 PELLPQLCELLDSP----DY------NTCEG-AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAV 195 (885)
T ss_pred hhHHHHHHHHhcCC----cc------cccch-hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHH
Confidence 56777787765322 10 01122 234888888855554554 2455668888999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcC
Q 000353 760 DALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH 839 (1622)
Q Consensus 760 d~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~ 839 (1622)
..++|.++. .. ......+. .|+.-+-.+ .+..+.+||+.+=..+-.+++-+-+.+.
T Consensus 196 ~cvNq~i~~--~~--------------------qal~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 196 GCVNQFIII--QT--------------------QALYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hhhhheeec--Cc--------------------HHHHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 999997651 10 01111222 123222333 4667889999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Q 000353 840 YSWPSILELLRSVADASEKDLITLGFQSLRFIMN 873 (1622)
Q Consensus 840 sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 873 (1622)
..-+.|.+-+-....+.++++.-.|++-.--++.
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 8888888766555555666666566666655554
No 16
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=20 Score=50.55 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=35.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcC-CCcHHHHHHHhhhhh
Q 000353 814 TQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVAD 854 (1622)
Q Consensus 814 ~~~~dVr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~~~~ 854 (1622)
....+||.+.|+.+..++..+|+.+. .-|..||.++-.+++
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeeccc
Confidence 45569999999999999999999996 689999997766665
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=79.09 E-value=2.5e+02 Score=38.07 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 000353 12 RALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISH 80 (1622)
Q Consensus 12 ~~L~~EskRk~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~ 80 (1622)
.+|-.+.+-+||-+|-.|=+.+..++.- .-.+.++.|+.-++..+++.+-..|.-|+-|+...
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 3444566667778887777776665541 11345677777888889999999999999998654
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.21 E-value=1.2e+02 Score=34.42 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHh--hccchhhHHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhh
Q 000353 717 SVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVES 791 (1622)
Q Consensus 717 ~L~kL~ev~~~N--~~R~~~iW~~l~---~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~ 791 (1622)
.+++|..++..| ......+++.+. .-+.....+.+..+...|...+..++... +. .
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~-~----------------- 87 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS-H----------------- 87 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG-G-----------------
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH-h-----------------
Confidence 667777777777 233566666666 33333344457888889999998887632 21 0
Q ss_pred cchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 000353 792 RHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 871 (1622)
Q Consensus 792 ~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI 871 (1622)
+..+-..++.++.... .....-|++..-+||..|++.++ .+=++++.++......+++.+-..+.+.+..+
T Consensus 88 ----~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 88 ----FEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp ----GHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1122123444454443 34456899999999999999765 11255588888877777777777888888888
Q ss_pred HhccC---CCCCh-hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcc
Q 000353 872 MNDGL---SSIPT-DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKG 921 (1622)
Q Consensus 872 ~~dfl---~~Lp~-~~~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~~ 921 (1622)
+..+- ..+.. ..+..++.++.++..- .+..+-=.|-..||.+......+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCHh
Confidence 87665 22322 2357788888888744 36666667888999887666643
No 19
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=74.44 E-value=2.6 Score=46.79 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=27.6
Q ss_pred cCCchhhhHHHHHHHHHH-------------------HHHHHHhcccccccC
Q 000353 439 LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEAVDV 471 (1622)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~l~~~~~~~ 471 (1622)
.+|||+|.|+|++|.|++ ++|+++|||++..|.
T Consensus 93 ~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~ 144 (185)
T cd00171 93 RLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNP 144 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCc
Confidence 389999999999999996 457999999886443
No 20
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.91 E-value=6.5 Score=29.95 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q 000353 977 FSLLKKLGADERPEVRNSAIRTLFQTLG 1004 (1622)
Q Consensus 977 L~~L~~L~~D~R~EVRn~AIqTLfril~ 1004 (1622)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999987764
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=71.26 E-value=2.8e+02 Score=35.71 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHH
Q 000353 51 ILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNM 130 (1622)
Q Consensus 51 ~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~i~~~~l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L 130 (1622)
....+.--+.++|+.+.+.||.+|-++. .++.++.++..+..+..-....|.-+.+-++..++..+...+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 5566667788889999999999999877 445556666666655333444788888888888887642222222
Q ss_pred HHHHHHHhhhccccCChHHHHHHHHHHHHHH
Q 000353 131 AQALGICLRLLENNRSSDSVRNTAAATFRQA 161 (1622)
Q Consensus 131 ~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Ql 161 (1622)
.+..+.++. ..+++ .|...|-..+.++
T Consensus 153 --~~~~l~~lL-~d~~~-~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 --LIPKLKQLL-SDKDP-SVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHT-THSSH-HHHHHHHHHHHHH
T ss_pred --HHHHHhhhc-cCCcc-hhHHHHHHHHHHH
Confidence 355555553 44566 6777777777776
No 22
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.93 E-value=57 Score=38.33 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcC-CCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q 000353 817 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 894 (1622)
Q Consensus 817 ~dVr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~~F 894 (1622)
...|..+++.+..+++++.+.++ .|=.-|.+++..+.+++++.-+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 37799999999999999887774 4557778999999888999999999999999998875 2 44466676766665
No 23
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=69.43 E-value=1.1e+02 Score=39.11 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHH---HHhhccchhhHHHHHHHHHHHh--c
Q 000353 674 ALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL---VNNLHRVEPLWDQVVGHFLELA--D 748 (1622)
Q Consensus 674 ~~L~~~al~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~---~~N~~R~~~iW~~l~~hl~~v~--~ 748 (1622)
..+|++++..+|..||. .+.+..+.+-+ +.|+-+ ...+......+..+. .
T Consensus 208 ~~iP~~sl~~~i~vLCs------------------------i~~~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 208 GDIPSESLSPCIEVLCS------------------------IVNSVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSP 262 (464)
T ss_pred CcCChHHHHHHHHHHhh------------------------HhcccccchhHHHHHHHHHc-CccHHHHHHHHHHHHccc
Q ss_pred CC----ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHH
Q 000353 749 NS----NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTL 824 (1622)
Q Consensus 749 ~~----n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL 824 (1622)
++ +.++--=|+..|+.++. .....+-........ .++..|... -...+.-|--.|+
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~------------------~~~~~~~~~l~~~~~-~vl~sl~~a-l~~~~~~v~~eIl 322 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLW------------------GSGEQGYPSLPFSPS-SVLPSLLNA-LKSNSPRVDYEIL 322 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHh------------------ccccCCcceecccHH-HHHHHHHHH-HhCCCCeehHHHH
Q ss_pred HHHHHHH-HhcCCCc-CCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhh------------HHHHHHH
Q 000353 825 KILLHVL-ERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC------------IHECVDV 890 (1622)
Q Consensus 825 ~~L~~iL-~~~g~~L-~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~------------~~~lV~~ 890 (1622)
..+..++ .+++..+ ...|..+++|+.. +-+-+...+... +..+++.
T Consensus 323 ~~i~~ll~~~~~~~l~~~~W~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (464)
T PF11864_consen 323 LLINRLLDGKYGRELSEEDWDIILDIIEE--------------------IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSS 382 (464)
T ss_pred HHHHHHHhHhhhhhhcccCchHHHHHHHH--------------------HHhhccccccccccccchHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhh
Q 000353 891 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 970 (1622)
Q Consensus 891 L~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 970 (1622)
+.+--.+.....=--..+.+|..+.+++.......-.-.++ .........|.
T Consensus 383 ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~----------------------------~~~~Ps~~~W~ 434 (464)
T PF11864_consen 383 IESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEE----------------------------RSCSPSNPDWL 434 (464)
T ss_pred HHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHh----------------------------cccCCCChHHH
Q ss_pred hhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000353 971 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1002 (1622)
Q Consensus 971 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 1002 (1622)
.--.-++.++- ..+.|++||-.|++++-+|
T Consensus 435 ~n~~~ll~~F~--~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 435 DNLQKLLDRFY--NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHHh--CCCCCchHHHHHHHHHhhC
No 24
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=68.62 E-value=3.6 Score=45.87 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=26.7
Q ss_pred ccCCchhhhHHHHHHHHHH--------------------HHHHHHhccccccc
Q 000353 438 VLVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVD 470 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~l~~~~~~ 470 (1622)
+.+|||+|.|+|+++.|++ ++|+++|||++..|
T Consensus 96 f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn 148 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHN 148 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-
T ss_pred eeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHh
Confidence 3489999999999999986 46789999988543
No 25
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=68.47 E-value=4.2 Score=45.16 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=27.2
Q ss_pred cCCchhhhHHHHHHHHHH--------------------HHHHHHhcccccccC
Q 000353 439 LVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVDV 471 (1622)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~l~~~~~~~ 471 (1622)
.+|||+|.|+|++|.|+. ++|+++||+++-.|.
T Consensus 94 ~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~ 146 (187)
T smart00222 94 RLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNP 146 (187)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCC
Confidence 489999999999999986 357889999875433
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.96 E-value=1e+02 Score=35.03 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=67.4
Q ss_pred hHHhHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHH
Q 000353 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1622)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~ 333 (1622)
.|.=+|+-|..++..+ .--...+.+...+| .+...+.+.+++. +.......+.++..+...+...+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 5677888889988888 22234577888888 4555555666542 333334678888999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcChH
Q 000353 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1622)
Q Consensus 334 EvfLs~Li~~l~~~~~~w~r~L~LEvl~~l~~dp~ 368 (1622)
+.++..|++.+... ...-|.-+.+++..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 99999999988553 34677788888887765544
No 27
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.60 E-value=56 Score=42.33 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccch
Q 000353 986 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1065 (1622)
Q Consensus 986 D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hhsr~~ 1065 (1622)
-+..+||.+|...||..+---|..+..+.-+.++.+-.. .+.++.+. +
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~-~l~~LL~d------------~------------------- 232 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFE-ELYSLLED------------P------------------- 232 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHH-HHHHHhcC------------C-------------------
Confidence 366899999999999999888988988888888766544 34434321 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHhhh
Q 000353 1066 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 1135 (1622)
Q Consensus 1066 ~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~-~~~~~els~a~~~sL~~lL~~~ 1135 (1622)
.-.-+..|..|++|+|..|+..+-. ..-..+|.++..-+ .....+|-.++++++..++-..
T Consensus 233 ----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 233 ----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 1134456889999999999987742 24455666665444 3445689999999998877543
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=65 Score=41.58 Aligned_cols=161 Identities=15% Similarity=0.204 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhc
Q 000353 733 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 812 (1622)
Q Consensus 733 ~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 812 (1622)
-.-|+.+...|.++..+++.+.-+-|..+|..++...- ++ ...+...+.+. .++-.|...+
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~--------------lds~~~~rpl~-~mipkfl~f~- 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QF--------------LDSDVLTRPLN-IMIPKFLQFF- 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HH--------------HhhhcccCchH-HhHHHHHHHH-
Confidence 45589999999999998888888889999988654211 00 00112234444 2333334443
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 000353 813 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 892 (1622)
Q Consensus 813 ~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~ 892 (1622)
.++++.||...+.|+.+++-...+.+--.=+..++.+-..+.+.++.+=+.-+..|-+..+-....+-+ .+...|+-.
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyM- 261 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYM- 261 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHH-
Confidence 556899999999999999877777766566666676666666666666667777777766433333221 233444322
Q ss_pred HHHhcCCCcchhHHHHHHHHHH
Q 000353 893 AYSSQKTELNISLTAVGLLWTT 914 (1622)
Q Consensus 893 ~F~~q~~dlNISLtAi~llw~i 914 (1622)
-...|+.|.|++|.|.++.-.+
T Consensus 262 L~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHH
Confidence 2346778999999999865443
No 29
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.27 E-value=1.5e+02 Score=35.99 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhc
Q 000353 733 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 812 (1622)
Q Consensus 733 ~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 812 (1622)
..+|.++.. ...|++..+|.+|++++...+..-. ..|...+|.-++..+..+..
T Consensus 123 ~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 123 LGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKILS 176 (342)
T ss_pred ccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHHc
Confidence 567988888 3467899999999999998654211 12344566556777777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCc-----CCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhcc
Q 000353 813 STQSTDVRAGTLKILLHVLERCGEKL-----HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDG 875 (1622)
Q Consensus 813 ~~~~~dVr~~iL~~L~~iL~~~g~~L-----~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~df 875 (1622)
.+...++|..+|-.+..+|.++-.-. -.||..+..++..-.. +..+.+.++.-+..+....
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQED 242 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhh
Confidence 88888999999999999998764333 2799999888876322 4557777777777666543
No 30
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=53.10 E-value=3.2e+02 Score=31.65 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHHhhcCC-----cHHHHHHHHH--HHHHHHHhccCCC--CHHHHHHHHHHhHH--HHHHhhhhhh
Q 000353 968 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAIR--TLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 1034 (1622)
Q Consensus 968 ~~~~LW~~LL~~L~~L~~D~-----R~EVRn~AIq--TLfril~~~g~~l--s~~~W~~~~~~VLF--PLl~~l~~~~ 1034 (1622)
.|..||..|+..+.=+++.. .+.|-.-+.+ .+|..+.+||+.| +|+..+..|.+++- +.|+++....
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 59999999988887776432 3444444444 3577788999877 78899999999986 7888886543
No 31
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=50.33 E-value=2.2e+02 Score=30.52 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=70.2
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhc
Q 000353 982 KLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLI 1059 (1622)
Q Consensus 982 ~L~~D~R~EVRn~AIqTLfril~~~g--~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1622)
......+.-=|+.|++.|-+++.... ..++...|+.+| +.||-.++.-.+......+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~if-eaL~~~i~~Ek~~y~~~~~-------------------- 69 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIF-EALFRCIEKEKEAYSRKKS-------------------- 69 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHH-HHHHHHHHHHHHHHhcCCC--------------------
Confidence 33345667789999999999998654 889999999887 5667666654432210000
Q ss_pred ccccchhhhhHHH----HHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHH
Q 000353 1060 HHSRNTAQKQWDE----TLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTT 1131 (1622)
Q Consensus 1060 hhsr~~~~k~W~E----T~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~e----ls~a~~~sL~~l 1131 (1622)
.......-.+ .+.-++..++......+.. +.-..|++++.+.+.....+ ++.--.++|+.+
T Consensus 70 ---~~~s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~--------kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~i 138 (155)
T PF11640_consen 70 ---SSASTATTAESRLSSCASALRLFVEKSNSRLKR--------KTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAI 138 (155)
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHHhhccc--------chHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 0000011123 3334444444444443332 23456888888888766644 455556667666
Q ss_pred Hhhh
Q 000353 1132 VLSH 1135 (1622)
Q Consensus 1132 L~~~ 1135 (1622)
|...
T Consensus 139 L~~~ 142 (155)
T PF11640_consen 139 LSYP 142 (155)
T ss_pred HCCC
Confidence 6543
No 32
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.03 E-value=37 Score=25.80 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 000353 739 VVGHFLELADNSNQHLRNIALDALDQSIC 767 (1622)
Q Consensus 739 l~~hl~~v~~~~n~~lr~~Avd~L~~L~~ 767 (1622)
+..+|.+..++++..+|..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999998764
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=47.52 E-value=1.5e+02 Score=32.59 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=59.4
Q ss_pred cchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHH
Q 000353 731 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 810 (1622)
Q Consensus 731 R~~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 810 (1622)
|...+=+....++.....++++.+|..|+-.|.+|+..-+-+ .+.+ .|. -+..+
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-------------------~k~~--l~~-----~~l~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-------------------VKGQ--LFS-----RILKL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-------------------ehhh--hhH-----HHHHH
Confidence 556666677888888889999999999999999998732211 0011 111 11112
Q ss_pred hccCCcHHHHHHHHHHHHHHHHh-cCCCcCCCcHHHHHHHhh
Q 000353 811 YFSTQSTDVRAGTLKILLHVLER-CGEKLHYSWPSILELLRS 851 (1622)
Q Consensus 811 ~~~~~~~dVr~~iL~~L~~iL~~-~g~~L~sgW~~If~IL~~ 851 (1622)
-...+.+||.....++.++... .++.+ +..+-+++..
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~ 109 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISS 109 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHH
Confidence 1466789999999999999988 44444 3333344443
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=46.20 E-value=9.8e+02 Score=33.00 Aligned_cols=266 Identities=16% Similarity=0.152 Sum_probs=143.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcC-CCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000353 813 STQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 891 (1622)
Q Consensus 813 ~~~~~dVr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L 891 (1622)
.+.+.|+|.+...-|..=||.-.-+|. .+-+-+..+|-..-.+.+.++-..|..|+-.+++ -++.+.+...|+.|
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvs----Kvke~~le~~ve~L 90 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVS----KVKEDQLETIVENL 90 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHh----hchHHHHHHHHHHH
Confidence 456778898888888888887655554 4556666666555555667788999999998884 57888899999988
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHcccCC-Ccchhhh-hh-hcccCCCccccCcc--hhh--hhhcccccccCCCC
Q 000353 892 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEEKE-AA-NQDLCSVPKQMDGE--KRE--EKTLSNLDDQNHSI 964 (1622)
Q Consensus 892 ~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~-~~~~~k~-~~-~~~~~s~~~~~~~~--~~e--~~~~~~~~~~~~~~ 964 (1622)
..=.-...+.-.-++|+++.-.++.-=..-... .+...+. .+ ..+ .+..+.+.. .-| +++...-.|.++ .
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~--~i~~qe~~sai~~e~lDil~d~lsr~g~-l 167 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQ--AISKQEDVSAIKCEVLDILADVLSRFGT-L 167 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHH--HhhhcccchhhHHHHHHHHHHHHHhhcc-c
Confidence 776444445555567777765443221100000 0000000 00 000 000000000 000 000000000000 0
Q ss_pred CchhhhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccc
Q 000353 965 GMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 1044 (1622)
Q Consensus 965 ~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~ 1044 (1622)
.+ .+-..++..+.-.-.-+|..||+.||..|=. +..+|.. ..+.+++=-+++.+...
T Consensus 168 -l~---~fh~~il~~l~~ql~s~R~aVrKkai~~l~~-la~~~~~-------~ly~~li~~Ll~~L~~~----------- 224 (1233)
T KOG1824|consen 168 -LP---NFHLSILKCLLPQLQSPRLAVRKKAITALGH-LASSCNR-------DLYVELIEHLLKGLSNR----------- 224 (1233)
T ss_pred -Cc---chHHHHHHHHhhcccChHHHHHHHHHHHHHH-HHHhcCH-------HHHHHHHHHHHhccCCC-----------
Confidence 01 1223355555555577999999999977544 3344432 34455555555555321
Q ss_pred cccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHH
Q 000353 1045 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAA 1124 (1622)
Q Consensus 1045 ~~~~~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~ 1124 (1622)
++..-..|.+.+++.+++=-.+.|.. +-+| .-..+.+|-. .+..+.+|+-+..
T Consensus 225 ---------------------~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~--ivp~v~~y~~-~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 225 ---------------------TQMSATRTYIQCLAAICRQAGHRFGS---HLDK--IVPLVADYCN-KIEEDDDELREYC 277 (1233)
T ss_pred ---------------------CchHHHHHHHHHHHHHHHHhcchhhc---ccch--hhHHHHHHhc-ccccCcHHHHHHH
Confidence 11122367777888777766555542 2122 2223444443 3367778999999
Q ss_pred HHHHHHHHhhh
Q 000353 1125 INCLQTTVLSH 1135 (1622)
Q Consensus 1125 ~~sL~~lL~~~ 1135 (1622)
+..|.-+|...
T Consensus 278 lQale~fl~rc 288 (1233)
T KOG1824|consen 278 LQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHhC
Confidence 99999888765
No 35
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.67 E-value=7.9e+02 Score=31.21 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=135.3
Q ss_pred hhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHh
Q 000353 733 EPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 811 (1622)
Q Consensus 733 ~~iW~~l~~hl~~v~~~~-n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 811 (1622)
..+=+.+++-+..++.+| |+..--|.-+++--++....+. +......||..++-||..+.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-------------------~~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-------------------DPEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-------------------GHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-------------------ChhHHHHHHHHHHHHHHHHH
Confidence 344455666666777887 8999999999998887633211 01234468878887888775
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcC-CCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHH
Q 000353 812 FSTQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDV 890 (1622)
Q Consensus 812 ~~~~~~dVr~~iL~~L~~iL~~~g-~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~ 890 (1622)
..+ -.|.---+++-+.++++.+. ..+......+|..|-+..-- + - ..+++.++..
T Consensus 127 q~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW------------------e----~-~gniPalvrL 182 (435)
T PF03378_consen 127 QQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW------------------E----R-RGNIPALVRL 182 (435)
T ss_dssp HTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG------------------G----S-TTTHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh------------------c----c-CCCcCcHHHH
Confidence 432 12555666777888888876 55544444455444333210 0 1 1246667777
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhh
Q 000353 891 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 970 (1622)
Q Consensus 891 L~~F~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 970 (1622)
|.+|.+.....-.+=.-+.-++.+-..|-.. +.. ...+.. .-+.....++.. ... .-..
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s---k~~--D~~gF~------------LL~~iv~~~p~~---~l~-~yl~ 241 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIAS---KAN--DHYGFD------------LLESIVENLPPE---ALE-PYLK 241 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT----TTC--HHHHHH------------HHHHHHHHS-HH---HHG-GGHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCC---CCc--chHHHH------------HHHHHHHHCCHH---HHH-HHHH
Confidence 7776665432222222333344444444432 100 000000 001111111100 000 1234
Q ss_pred hhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000353 971 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1042 (1622)
Q Consensus 971 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g--------~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~ 1042 (1622)
.+|..+|.+|.+- .-...+++=+..+.-....|| +...+..|..++.+++.|-++++...
T Consensus 242 ~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------- 309 (435)
T PF03378_consen 242 QIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------- 309 (435)
T ss_dssp HHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH---------
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc---------
Confidence 6788888888652 222233333322222222343 23455678888888888876665311
Q ss_pred cccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCc
Q 000353 1043 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 1117 (1622)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~ 1117 (1622)
.| +.++.=|++++...- +.+.. ...+.|..+++-+-+++....
T Consensus 310 ----------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ----------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ----------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred ----------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 12 334556777777542 22211 145789999998888876544
No 36
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=43.39 E-value=9.1e+02 Score=33.29 Aligned_cols=151 Identities=11% Similarity=0.102 Sum_probs=95.1
Q ss_pred ccchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHH
Q 000353 730 HRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRV 809 (1622)
Q Consensus 730 ~R~~~iW~~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~ 809 (1622)
.+.+..-..++.-......++-..+..-|.-+.-+++. .+.+-+ .+.... ....+..++-..+..
T Consensus 512 ~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl~------~~~~~d--------~~~~v~~m~~~tl~r 576 (1233)
T KOG1824|consen 512 EVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPLQ------PPSSFD--------ASPYVKTMYDCTLQR 576 (1233)
T ss_pred hhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-HhcccC------CCccCC--------CChhHHHHHHHHHHH
Confidence 34555555555555555566667777777777777765 333210 000000 001122222233445
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHH
Q 000353 810 LYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVD 889 (1622)
Q Consensus 810 L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~ 889 (1622)
+.....+-|||+..+.|+.+++-.+|+.++..-+.++.|+.---+ ++..--.|+..+.+|..--+..--...+...+.
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 556677889999999999999999999999999999988854332 334444689999999865444211345677788
Q ss_pred HHHHHHhc
Q 000353 890 VTGAYSSQ 897 (1622)
Q Consensus 890 ~L~~F~~q 897 (1622)
-+..|++.
T Consensus 655 ~l~~flrK 662 (1233)
T KOG1824|consen 655 ELASFLRK 662 (1233)
T ss_pred HHHHHHHH
Confidence 88888764
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=42.32 E-value=4.3e+02 Score=31.58 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=79.6
Q ss_pred hcChhHHHHHHHHHHHHhCCCCCCc---------ccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcchHHH
Q 000353 20 RRYPAVKDGAEHAILKLRSLSSPSE---------LAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKE 90 (1622)
Q Consensus 20 Rk~~~lk~A~e~al~~Lk~~~~~~~---------l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~i~~~~l~~ 90 (1622)
+-+.+||-.|=+++-.+=....... ......+++-|.-...+.++++-.+|..++-||+-+|.+..
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----- 149 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----- 149 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-----
Confidence 3466666666666544333222111 12346788899989999999999999999999999999876
Q ss_pred HHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHhhhh
Q 000353 91 IFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVV 170 (1622)
Q Consensus 91 Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~Rv~ 170 (1622)
.=++|..|..+.-++.. ....-|.++|..||..|..++. .. +..+...+.-+|.++.
T Consensus 150 ----------------~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~y~~s~~--~~----Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 150 ----------------PPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPVYASSSP--EN----QERLAEAFLPTLRTLS 206 (298)
T ss_pred ----------------HHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHcCCH--HH----HHHHHHHHHHHHHHHH
Confidence 12455555554444432 2345799999999999875433 22 2445555556666654
No 38
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.03 E-value=8.7e+02 Score=32.77 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH---HHhHHHHHHhhhhhhccCCcccccccccCcCC
Q 000353 976 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL---WNYVFPMLDCASHMAATSSKDEWQGKELGTRG 1051 (1622)
Q Consensus 976 LL~~L~~L~~D~-R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~---~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~ 1051 (1622)
++..+.++-.|+ ..-||=.|++||=-.++.. .|+++.....+ +..+|.|+..+.+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e------------------- 585 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE------------------- 585 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh-------------------
Confidence 445556777786 8999999999987777743 35555444443 3334444444321
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHH
Q 000353 1052 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS--KEVSLAAINCLQ 1129 (1622)
Q Consensus 1052 ~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~--~els~a~~~sL~ 1129 (1622)
-||++.+|+.++.+..+-=..+.. .=..+++|+..+..... .-+..|.+..|.
T Consensus 586 -------------------~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 586 -------------------CDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 278888888888887665555532 22346666666654433 347778888899
Q ss_pred HHHhhhcCC
Q 000353 1130 TTVLSHSTK 1138 (1622)
Q Consensus 1130 ~lL~~~~~~ 1138 (1622)
+++...+..
T Consensus 641 ~lV~alg~q 649 (978)
T KOG1993|consen 641 NLVNALGAQ 649 (978)
T ss_pred HHHHHhccC
Confidence 988776543
No 39
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.63 E-value=1e+03 Score=31.96 Aligned_cols=262 Identities=17% Similarity=0.220 Sum_probs=153.6
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHH-HHhccCCcHHHHHHHHH
Q 000353 747 ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLR-VLYFSTQSTDVRAGTLK 825 (1622)
Q Consensus 747 ~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~-~L~~~~~~~dVr~~iL~ 825 (1622)
..+|++.+|..|-+.|.++... .|. .|+.-+. +|...+...++|...-=
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~-----------------------------nf~-~F~~~Ls~vl~n~~~~~~~R~~AGL 59 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQ-----------------------------NFP-QFLVLLSEVLANDNSSDVARMAAGL 59 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhc-----------------------------cHH-HHHHHHHHHHhccCCcHHHHHHHhH
Confidence 4567888888888888775431 122 1222222 33333444566655555
Q ss_pred HHHHHHHhcCCCcC----CCcHHHH--------HHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q 000353 826 ILLHVLERCGEKLH----YSWPSIL--------ELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGA 893 (1622)
Q Consensus 826 ~L~~iL~~~g~~L~----sgW~~If--------~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~~ 893 (1622)
.||+-|..+.+..+ +-|-.+= ..+..+-...++..-..|=+++-.|..= .||.+..+.++.++..
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~ 136 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVS 136 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHH
Confidence 56666666555443 3453211 1111111113445566777888888752 4788999999999999
Q ss_pred HHhcCCCc---chhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhh
Q 000353 894 YSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 970 (1622)
Q Consensus 894 F~~q~~dl---NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 970 (1622)
-+.+.+-. .-+|.|+|++ .+... + + .+. ...+
T Consensus 137 nv~~~~~~~~k~~slealGyi-------ce~i~---p---e-----------vl~---------------------~~sN 171 (859)
T KOG1241|consen 137 NVGEEQASMVKESSLEALGYI-------CEDID---P---E-----------VLE---------------------QQSN 171 (859)
T ss_pred hcccccchHHHHHHHHHHHHH-------HccCC---H---H-----------HHH---------------------HHHh
Confidence 88776555 4477888865 22100 1 0 000 0112
Q ss_pred hhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcC
Q 000353 971 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTR 1050 (1622)
Q Consensus 971 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~ 1050 (1622)
.....+..+. ....+-..||=.|...|...|.--+..|..+.=...|-+|+- + .+.++
T Consensus 172 ~iLtaIv~gm--rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc-------E--atq~~----------- 229 (859)
T KOG1241|consen 172 DILTAIVQGM--RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC-------E--ATQSP----------- 229 (859)
T ss_pred HHHHHHHhhc--cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee-------e--cccCC-----------
Confidence 2222222222 224566789999999999999876766666544333222110 0 01111
Q ss_pred CCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000353 1051 GGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1130 (1622)
Q Consensus 1051 ~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~ 1130 (1622)
+ .+-++-|++.++|+..-||+.+.. .+.+ .++...-..|.+++++|+..+++.-.+
T Consensus 230 -------------d------~~i~~aa~~ClvkIm~LyY~~m~~--yM~~---alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 230 -------------D------EEIQVAAFQCLVKIMSLYYEFMEP--YMEQ---ALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred -------------c------HHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 267888999999999999987753 2333 367777778889999999999998876
Q ss_pred HH
Q 000353 1131 TV 1132 (1622)
Q Consensus 1131 lL 1132 (1622)
+-
T Consensus 286 ic 287 (859)
T KOG1241|consen 286 IC 287 (859)
T ss_pred HH
Confidence 54
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.36 E-value=8.5e+02 Score=34.32 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred cCCChhHHHHHHHHHHHHHHH-----HhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHH
Q 000353 748 DNSNQHLRNIALDALDQSICA-----VLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG 822 (1622)
Q Consensus 748 ~~~n~~lr~~Avd~L~~L~~~-----~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~ 822 (1622)
++.+..++.+|-+.|..++.. +. +......++.++.++... ..-++..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~----------------------~q~i~~I~n~L~ds~qs~-----~~~~~~~ 716 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLV----------------------EQRIDDIFNSLLDSFQSS-----SSPAQAS 716 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHH----------------------HHHHHHHHHHHHHHHhcc-----chHHHHH
Q ss_pred HHHHHHHHHHhcC-CCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHH--hccCCCCChh---hHHHHHHHHHHHHh
Q 000353 823 TLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM--NDGLSSIPTD---CIHECVDVTGAYSS 896 (1622)
Q Consensus 823 iL~~L~~iL~~~g-~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~--~dfl~~Lp~~---~~~~lV~~L~~F~~ 896 (1622)
-+.||+.|++.++ +....==+.|-++|-.. .+.+...=+.||+||..|+ .-++...... .+...+..++.=--
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHHH
Q 000353 897 QKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAV 976 (1622)
Q Consensus 897 q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~L 976 (1622)
.+.-.+++-+-+.+--.+-+|-... .+..-..+
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~l-----------------------------------------------d~~~l~~l 828 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNIL-----------------------------------------------DDETLEKL 828 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccc-----------------------------------------------cHHHHHHH
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhH
Q 000353 977 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYV 1023 (1622)
Q Consensus 977 L~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VL 1023 (1622)
+.-+...-...++|||.+||.-+=..+...-...-...-+.++-.++
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
No 41
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=39.24 E-value=72 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000353 1072 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1130 (1622)
Q Consensus 1072 ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~ 1130 (1622)
|.+-+.+..+..+...+.+.|.. .|..+++.+......++.++..-|+++++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~S------GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIKS------GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 78889999999999999988854 699999999999998889999999999875
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=39.20 E-value=72 Score=31.49 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHH
Q 000353 739 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 818 (1622)
Q Consensus 739 l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 818 (1622)
+..++.+...+++..+|..|+.+|..++... + + ......+..++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~--------------~-----~~~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN---N--------------D-----NIQAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---H--------------H-----HHHHHHHCCChHHHHHHHh-CCCHH
Confidence 4567777888888999999999999876521 0 0 0001112123344444443 35789
Q ss_pred HHHHHHHHHHHHHHhc
Q 000353 819 VRAGTLKILLHVLERC 834 (1622)
Q Consensus 819 Vr~~iL~~L~~iL~~~ 834 (1622)
+++..+.+|.++.+..
T Consensus 65 v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 65 VVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHHHHccCc
Confidence 9999999999997654
No 43
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=38.90 E-value=1.1e+02 Score=33.98 Aligned_cols=89 Identities=10% Similarity=0.238 Sum_probs=69.1
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCCh
Q 000353 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1622)
Q Consensus 49 ~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~i~~~~-l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g 127 (1622)
..|+..++-.|-+.++++-..|+..|+-.+.+|++.|.. ++.++ ||. ++ .++.+.=+..+.+..+...|...++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~- 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVE- 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHH-
Confidence 478999999999999999999999999999999998864 55555 343 22 3446777888888888888755553
Q ss_pred HHHHHHHHHHhhhcc
Q 000353 128 DNMAQALGICLRLLE 142 (1622)
Q Consensus 128 ~~L~~~l~~C~~L~~ 142 (1622)
....++++.+|..+.
T Consensus 82 ~~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQR 96 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356678888888754
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=35.98 E-value=1.9e+02 Score=28.57 Aligned_cols=29 Identities=38% Similarity=0.428 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000353 974 FAVFSLLKKLGADERPEVRNSAIRTLFQTL 1003 (1622)
Q Consensus 974 ~~LL~~L~~L~~D~R~EVRn~AIqTLfril 1003 (1622)
-.+|..|.+++.|+.+.||++| +.|=|.|
T Consensus 67 ~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 67 NEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3466888999999999999999 5555544
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.65 E-value=1.3e+03 Score=31.32 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 000353 863 LGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLL 911 (1622)
Q Consensus 863 ~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ll 911 (1622)
+=|+|++-|++=... ..-....|++|++|..+. |-||-.-|+..|
T Consensus 293 ILYE~V~TI~~I~~~---~~LrvlainiLgkFL~n~-d~NirYvaLn~L 337 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSN---SGLRVLAINILGKFLLNR-DNNIRYVALNML 337 (866)
T ss_pred HHHHHHHHHHhccCC---chHHHHHHHHHHHHhcCC-ccceeeeehhhH
Confidence 457888888752211 233567889999999886 888766665443
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=35.04 E-value=3.9e+02 Score=29.24 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000353 751 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 830 (1622)
Q Consensus 751 n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~i 830 (1622)
|+.+|..|+.++.+++.++-. ..+.. . |...-.-...++.||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--------------------------~ve~~-~-~~l~~~L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--------------------------LVEPY-L-PNLYKCLRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--------------------------HHHhH-H-HHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 578999999999999885410 01100 0 1111112456789999999999999
Q ss_pred HHhcCCCcCCCcHHH-HHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHH
Q 000353 831 LERCGEKLHYSWPSI-LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVG 909 (1622)
Q Consensus 831 L~~~g~~L~sgW~~I-f~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ 909 (1622)
+.+. .++- ...+ +.++... .|.++.+...|=.++.-+....-+..- ...+++++..|.....+..+.-....
T Consensus 53 i~~d--~ik~-k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~~~~~~~~~~~~~~~ 125 (178)
T PF12717_consen 53 ILED--MIKV-KGQLFSRILKLL-VDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLNNCYEHPVYGPLSRE 125 (178)
T ss_pred HHcC--ceee-hhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhCccccccccccCHH
Confidence 9862 3322 2233 4666655 445667777777777766654222222 34455555555544322211112334
Q ss_pred HHHHHHHHHHcc
Q 000353 910 LLWTTTDFIAKG 921 (1622)
Q Consensus 910 llw~isD~L~~~ 921 (1622)
-.+.+-+|+-+.
T Consensus 126 ~~~~I~~fll~~ 137 (178)
T PF12717_consen 126 KRKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
No 47
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.57 E-value=4.7e+02 Score=28.27 Aligned_cols=87 Identities=20% Similarity=0.075 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----------chhhHHHHHHHHHHHhcCC
Q 000353 681 VKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----------VEPLWDQVVGHFLELADNS 750 (1622)
Q Consensus 681 l~~~v~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----------~~~iW~~l~~hl~~v~~~~ 750 (1622)
...+++.||.++......... +........++.|+|+-+-.+-..+-.. ...+++.+..++...+.++
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~--~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~ 85 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNS--PDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS 85 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCC--cchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 345678899998533211110 0000112345678887655543222111 2566889999999999888
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000353 751 NQHLRNIALDALDQSICAV 769 (1622)
Q Consensus 751 n~~lr~~Avd~L~~L~~~~ 769 (1622)
+..+-..+...+..++.++
T Consensus 86 ~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888889999999888755
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.15 E-value=3.2e+02 Score=35.14 Aligned_cols=211 Identities=16% Similarity=0.223 Sum_probs=123.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHH
Q 000353 742 HFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRA 821 (1622)
Q Consensus 742 hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~ 821 (1622)
.|+.+..+++..++++|+=+|-.++... .. -....+..-.+.|+..++..+...-+++
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIagds------------------~~----~Rd~vl~~g~l~pLl~~l~~~~~~~~lR 213 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAGDS------------------PD----CRDYVLSCGALDPLLRLLNKSDKLSMLR 213 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccccCC------------------hH----HHHHHHhhcchHHHHHHhccccchHHHH
Confidence 4889999999999999999999875421 01 1123455556778877765554456788
Q ss_pred HHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhh---ccchhHHHHHHHHHHHHHhccCCC----CChhhHHHHHHHHHHH
Q 000353 822 GTLKILLHVLERCGEKLHYSWPSILELLRSVAD---ASEKDLITLGFQSLRFIMNDGLSS----IPTDCIHECVDVTGAY 894 (1622)
Q Consensus 822 ~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~---~~~~~lv~~aF~~LqlI~~dfl~~----Lp~~~~~~lV~~L~~F 894 (1622)
.+..+|.++-.... =.--|..|=.+|..... ..++.+..-|+-.+..+.+.--.. +.......+|++|..+
T Consensus 214 n~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 214 NATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS 291 (514)
T ss_pred HHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC
Confidence 88888888866532 23466666666654433 345566666777776666432221 2234456666666655
Q ss_pred HhcCCCcchhHHHHHHHHHHHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHH
Q 000353 895 SSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLF 974 (1622)
Q Consensus 895 ~~q~~dlNISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~ 974 (1622)
--+. ..=+|.++|-. .. ++. ..+. .-.+.
T Consensus 292 ~~~v--~~PaLRaiGNI-------vt----G~d-----------------------~QTq------------~vi~~--- 320 (514)
T KOG0166|consen 292 SPKV--VTPALRAIGNI-------VT----GSD-----------------------EQTQ------------VVINS--- 320 (514)
T ss_pred Cccc--ccHHHhhccce-------ee----ccH-----------------------HHHH------------HHHhc---
Confidence 3221 11123333211 11 100 0000 00111
Q ss_pred HHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhh
Q 000353 975 AVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASH 1032 (1622)
Q Consensus 975 ~LL~~L~~L~~-D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~ 1032 (1622)
..|..|..+-. .+..-+|+.|+=|+-.|-. |. .+.=+.++..=++|.|-++.+
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~---~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITA--GN---QEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC---HHHHHHHHHcccHHHHHHHHh
Confidence 13455566555 3444499999999888876 54 345678888889999888864
No 49
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.51 E-value=8.2e+02 Score=29.01 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccC
Q 000353 969 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELG 1048 (1622)
Q Consensus 969 ~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~ 1048 (1622)
....|-.++-.+-.+.-|..+++|-.+++.|...+..-.. ..|..+.+.-++.+|++.....-
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~----~~~~~L~~tGl~~v~~~al~~~L------------- 175 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA----AEWDILRRTGLFSVFEDALFPCL------------- 175 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh----hhhHHHHHcChHHHHHHHHHHHh-------------
Confidence 4456766777788889999999999999999999973322 12544444444444443321100
Q ss_pred cCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhh--cccCchHHHHHH-HHHHHHHHHcCCchHHHHHHH
Q 000353 1049 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFL--ANLSNFWTGWES-LLHFVKNSILNGSKEVSLAAI 1125 (1622)
Q Consensus 1049 ~~~~~~~~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L--~~l~~F~~~W~~-lL~~~~~~~~~~~~els~a~~ 1125 (1622)
.+-..-+...+..+-...+...+.+++..-+..= .....+.+...+ +|..+..........+..+.+
T Consensus 176 ----------~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 176 ----------YYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred ----------hcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 0000011113333444455555555554433110 111122233222 333333333333478888999
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhc
Q 000353 1126 NCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1158 (1622)
Q Consensus 1126 ~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 1158 (1622)
+.+..++..++.. .-...+..+.++..+..
T Consensus 246 ~~l~~~i~~lGi~---~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 246 QQLPPIIDELGIS---SVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHHHhc
Confidence 9999988876532 23455666666654433
No 50
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=31.54 E-value=1e+03 Score=28.80 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 000353 1071 DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVL 1150 (1622)
Q Consensus 1071 ~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~ 1150 (1622)
.+|+.-+|.++.++|.+++.. +...+...+|++.+.++++.++.+=...+.+.+.=+....+.. .-..++++.+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g-~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG-EDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHH
Confidence 479999999999999888741 2223567889999999998887533334455554443443322 22466777777
Q ss_pred HHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccCCCCCCccccC--CCCHHHH
Q 000353 1151 DVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFG--HVPPVLR 1228 (1622)
Q Consensus 1151 ~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~--~~s~lQ~ 1228 (1622)
.+..+++.-... ..+..+.++.++.-+--. ..-+.+.+...+..|.......++..+...+.+. .-+++..
T Consensus 132 ~~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 132 PVLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 777666543211 123345666665554221 2345677776666666332211222222222222 2468999
Q ss_pred HHHHhccccC
Q 000353 1229 TILEILPLLS 1238 (1622)
Q Consensus 1229 ~vl~~l~~i~ 1238 (1622)
+.|.+--++-
T Consensus 205 aAL~aW~lLl 214 (309)
T PF05004_consen 205 AALSAWALLL 214 (309)
T ss_pred HHHHHHHHHH
Confidence 9999855543
No 51
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=28.71 E-value=1.7e+02 Score=39.48 Aligned_cols=93 Identities=14% Similarity=0.260 Sum_probs=66.4
Q ss_pred HHHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhc
Q 000353 265 ILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT 344 (1622)
Q Consensus 265 vL~n~~~~F~~~~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l 344 (1622)
+++.-..+..=.|+|.+-.+..+||+.+..+..+++ .|+...++.-+|--+++ -....+..+|.++..|+.++
T Consensus 550 lmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 550 LMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred HHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHH
Confidence 333333455567999999999999999998887653 56554455555555554 33467889999999999998
Q ss_pred cCC---CCHHHHHHHHHHHHHhh
Q 000353 345 FLD---LPLWHRILVLEILRGFC 364 (1622)
Q Consensus 345 ~~~---~~~w~r~L~LEvl~~l~ 364 (1622)
+.+ .|.-.-.++++++.-+.
T Consensus 623 ~~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 623 QLNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred cCcccccCchhhHHHHHHHHHHH
Confidence 543 35667788888887553
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=27.51 E-value=1.5e+02 Score=29.19 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhCCCCC-CcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 000353 14 LSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1622)
Q Consensus 14 L~~EskRk~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~ 81 (1622)
|..--+..++++|+.+=.+|..+-...+. .........+.+++-...+++.++...|+.+|..|...+
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 44444566788888888888877654221 112223467778887778889999999999999997654
No 53
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=27.43 E-value=8.2e+02 Score=26.53 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHhCchhhccC-HHHHHHHHHHHHHHHHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHH-HhhhHhHHHHHHHH
Q 000353 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1622)
Q Consensus 262 lesvL~n~~~~F~~~-~~l~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~-~~~L~~E~EvfLs~ 339 (1622)
|-+.|.+++.+-... ....+.++.++-.+| +++.. ..-+ .-+.++-.+++.- ...|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw--~G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRW--AGLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566666666554 566666677666665 54211 1112 2345545555554 57888999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhh----cChHHHHHH
Q 000353 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLL 373 (1622)
Q Consensus 340 Li~~l~~~~~~w~r~L~LEvl~~l~----~dp~ll~~i 373 (1622)
++++|+.+.|.--+..+...+..|+ .-|++.|++
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999988777777888888888775 556666666
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.94 E-value=1.7e+03 Score=30.16 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=91.0
Q ss_pred cChhH-HHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--CC--cchHHHHHHHH
Q 000353 21 RYPAV-KDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--VA--PSALKEIFSML 95 (1622)
Q Consensus 21 k~~~l-k~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~--i~--~~~l~~Il~~l 95 (1622)
++|-| |.|+-.+...+|..++ ..+.|+.+|.-....|+.-+...++.-++.++..+- +. .+.++..+..|
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45555 6788888888877654 245788888888888888888888888888887643 21 12344444444
Q ss_pred Hcc-----------cCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHH
Q 000353 96 KNH-----------ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1622)
Q Consensus 96 ~~~-----------~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~ 164 (1622)
.+. ....|.=.|.|||+.|..+-++.. -.-|.|..+|.-.++=..+|| |.--|-|-+-|.+
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdssk------N~GnAILYE~V~T 300 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSK------NAGNAILYECVRT 300 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHH
Confidence 432 345677899999999999998842 235677777765555434444 4455677777777
Q ss_pred HHh
Q 000353 165 IFD 167 (1622)
Q Consensus 165 VF~ 167 (1622)
||+
T Consensus 301 I~~ 303 (866)
T KOG1062|consen 301 IMD 303 (866)
T ss_pred HHh
Confidence 774
No 55
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.20 E-value=9.2e+02 Score=28.73 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcH
Q 000353 738 QVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQST 817 (1622)
Q Consensus 738 ~l~~hl~~v~~~~n~~lr~~Avd~L~~L~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~ 817 (1622)
.+.+.+.-...|++..+|+.|+..|--.+. +.++ .....+. .|+ ..+. ..+.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~--------------------~a~~~l~-l~~----~~~~-~~~~ 78 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCL--LDKE--------------------LAKEHLP-LFL----QALQ-KDDE 78 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hChH--------------------HHHHHHH-HHH----HHHH-hCCH
Confidence 344444467788889999999999986443 2210 0111222 122 2222 2378
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCCcH
Q 000353 818 DVRAGTLKILLHVLERCGEKLHYSWP 843 (1622)
Q Consensus 818 dVr~~iL~~L~~iL~~~g~~L~sgW~ 843 (1622)
+|+...++++-.++-.||...-..+.
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchh
Confidence 99999999999999999977654333
No 56
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=24.43 E-value=1.6e+03 Score=28.73 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=69.5
Q ss_pred HHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCc-HHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCC
Q 000353 799 IECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSW-PSILELLRSVADASEKDLITLGFQSLRFIMNDGLS 877 (1622)
Q Consensus 799 lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW-~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfl~ 877 (1622)
|-.+++.-++.| ..+.+.-+|+..|+.|.+|+.+....+..+= -.|-.+|.++. +.++..++.|=+..--+...+
T Consensus 327 f~~iL~~l~EvL-~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~-ds~~~v~~~Aeed~~~~las~-- 402 (516)
T KOG2956|consen 327 FAEILLLLLEVL-SDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK-DSQDEVMRVAEEDCLTTLASH-- 402 (516)
T ss_pred HHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHhh--
Confidence 444444455555 5556678899999999999999998886544 44556666554 466778888887766565544
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 000353 878 SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLW 912 (1622)
Q Consensus 878 ~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llw 912 (1622)
+|..|+....-++-. .|-.+.+-+|.++-
T Consensus 403 -~P~~~I~~i~~~Ilt-----~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 403 -LPLQCIVNISPLILT-----ADEPRAVAVIKMLT 431 (516)
T ss_pred -CchhHHHHHhhHHhc-----CcchHHHHHHHHHH
Confidence 566666665555544 46667666666553
No 57
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.59 E-value=1.1e+03 Score=28.50 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=75.1
Q ss_pred HhccHHHHhccCCcHHHHH-HHHHHHHHHHHhcCCCcCCCcHHHHHHH-hhhh----h--ccchhHHHHHHHHHHHHHhc
Q 000353 803 VISPLRVLYFSTQSTDVRA-GTLKILLHVLERCGEKLHYSWPSILELL-RSVA----D--ASEKDLITLGFQSLRFIMND 874 (1622)
Q Consensus 803 ll~pl~~L~~~~~~~dVr~-~iL~~L~~iL~~~g~~L~sgW~~If~IL-~~~~----~--~~~~~lv~~aF~~LqlI~~d 874 (1622)
++.++..-|..+ .++.|+ .+|.++..++.+-|+.+...=+.|++.+ ..+- + ...++.-..=|.-++-|+..
T Consensus 72 l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~ 150 (319)
T PF08767_consen 72 LLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH 150 (319)
T ss_dssp HHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH
Confidence 334444445443 223332 4677888888888877776666666433 2221 1 13456666777888888876
Q ss_pred cCC---CCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000353 875 GLS---SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 920 (1622)
Q Consensus 875 fl~---~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llw~isD~L~~ 920 (1622)
.++ .+|.+.|..+++++ .+|-+..+-+|+-++...+-.+.+.+.+
T Consensus 151 ~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 151 CFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 543 58999999999999 6777777899998888877666666654
No 58
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=23.52 E-value=1.2e+02 Score=29.35 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=33.9
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHHhhhhhhcc-cCchHHHHHHHHHHHHHHH
Q 000353 1065 TAQKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 1113 (1622)
Q Consensus 1065 ~~~k~W~--ET~vlal~gl~~lf~~~~~~L~~-l~~F~~~W~~lL~~~~~~~ 1113 (1622)
.+...|. |+...++.|++++|..|+..... .+...---..|.+|+..+.
T Consensus 14 ~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 14 PESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred cccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 3336675 89999999999999999987642 2222222456778777654
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=23.23 E-value=1.7e+02 Score=28.86 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Q 000353 802 AVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 873 (1622)
Q Consensus 802 ~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 873 (1622)
.++.|+... ....+..||....++|.+|....++.+-.--..||..|.....+.+++ |+.|-+.|...+.
T Consensus 27 ~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 456666655 356788999999999999998877666557788888887776665544 7777777765543
No 60
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.09 E-value=4.3e+02 Score=32.07 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCcHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccc
Q 000353 986 DERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 1064 (1622)
Q Consensus 986 D~R~EVRn~AIqTLfril~-~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hhsr~ 1064 (1622)
+.-|+.|..-+=.++.++- ..|+.+.+ .-..++..|.-|.++=+.+. .
T Consensus 82 ~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d----------~-------------------- 130 (319)
T PF08767_consen 82 NSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD----------F-------------------- 130 (319)
T ss_dssp HS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------S--------------------
T ss_pred cCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------h--------------------
Confidence 3567777776666666665 45655544 33466666666666655211 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcC
Q 000353 1065 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 1137 (1622)
Q Consensus 1065 ~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~ 1137 (1622)
.+.-|-++--.+.+..+...+|..+..++ .+.+..+++.+...+.....+++..+++.+.+++.....
T Consensus 131 ---~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 ---EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp ---SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 11225555666667777777787776654 346777999999999999999999999999999976544
No 61
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=22.92 E-value=7.1e+02 Score=29.19 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch
Q 000353 9 SDLRALSAEARR-RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1622)
Q Consensus 9 ~dL~~L~~EskR-k~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~~i~~~~ 87 (1622)
.+|+.|+.--+. +.|.+++.+--++......+.+.+..+.-..+.++.--..++++++..-|+.+|.-|-... =....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHH
Confidence 577888877654 6799999999999998776665556666667777777788899999999999998763321 11122
Q ss_pred ----HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhcc
Q 000353 88 ----LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1622)
Q Consensus 88 ----l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~ 142 (1622)
+.+|.+.+..+ .. +..+|+-.|+.|..+..+. -+...+.+.+.-+++|..
T Consensus 91 Ik~~i~~Vc~~~~s~-~l-ns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS-PL-NSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHH
Confidence 33444333221 22 3368999999999884432 123457777777777743
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.37 E-value=5e+02 Score=24.07 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHH-hhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000353 14 LSAEA-RRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKL 77 (1622)
Q Consensus 14 L~~Es-kRk~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkL 77 (1622)
|..-. +-+++.+|..+=++|..+ ..++.+.+++-.++++++.+-..|+.+|.++
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34434 467899998877777732 3457888888889999999999999999876
No 63
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.30 E-value=95 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 000353 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1622)
Q Consensus 49 ~~~l~Pfllac~sk~~kl~~iaL~~lqkLi~~~ 81 (1622)
++++.|+.-|-.|+++.+...+|.+||+|+..+
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
No 64
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.05 E-value=1.4e+03 Score=29.23 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccc
Q 000353 976 VFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAV 1055 (1622)
Q Consensus 976 LL~~L~~L~~D~R~EVRn~AIqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1622)
+...|..+..++|.+=|++|++-|...+..- .|+ .|+.+|.++|.-+|+.+....
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfs--vWeq~f~~iL~~l~EvL~d~~--------------------- 342 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG--SFS--VWEQHFAEILLLLLEVLSDSE--------------------- 342 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc--chh--HHHHHHHHHHHHHHHHHccch---------------------
Confidence 4556677788899999999999999888743 344 499999999999999774210
Q ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhh
Q 000353 1056 HMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSH 1135 (1622)
Q Consensus 1056 ~~~~hhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~l~~F~~~W~~lL~~~~~~~~~~~~els~a~~~sL~~lL~~~ 1135 (1622)
+ .--+.+||.-+.++..+-=..|... .=..+-..++ +.+...+++..+|-++.-.++.+.
T Consensus 343 --------~------~~~k~laLrvL~~ml~~Q~~~l~Ds-----tE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 343 --------D------EIIKKLALRVLREMLTNQPARLFDS-----TEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred --------h------hHHHHHHHHHHHHHHHhchHhhhch-----HHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhh
Confidence 0 0124678888887776655444321 1111222222 344445566666666655555554
Done!