Query 000353
Match_columns 1622
No_of_seqs 298 out of 728
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 22:40:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000353.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_4-8//hhsearch_pdb/000353hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_E ARNO; protein transport 1.0 1 1 51.7 1.1 34 438-471 102-153 (203)
2 3ltl_A Brefeldin A-inhibited g 1.0 1 1 50.6 1.1 33 438-470 108-160 (211)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 48.1 -0.2 20 438-457 113-132 (230)
4 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 48.0 1.1 33 438-470 104-154 (347)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 37.9 2.7 34 438-471 100-151 (356)
6 2qk2_A LP04448P; mini spindles 1.0 1 1 36.1 17.6 60 814-873 68-127 (242)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 35.1 22.0 150 10-162 7-162 (1230)
8 1b3u_A Protein (protein phosph 1.0 1 1 34.9 20.9 19 985-1003 529-547 (588)
9 1b3u_A Protein (protein phosph 1.0 1 1 34.9 20.7 24 984-1007 450-473 (588)
10 1ibr_B P95, importin beta-1 su 1.0 1 1 34.0 20.4 160 734-918 124-290 (462)
No 1
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=51.70 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHCCCCCCCC
Q ss_conf 4587513269999999998------------------999887412111147
Q 000353 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVDV 471 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~l~~~~~~~ 471 (1622)
..+|||+|+|+|++|.||+ ++|+++||||+.-|.
T Consensus 102 f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~ 153 (203)
T 1r8s_E 102 FRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNP 153 (203)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 6178716899999999999999849765678116799998998865100474
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=50.55 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHH--------------------HHHHHHHCCCCCCC
Q ss_conf 4587513269999999998--------------------99988741211114
Q 000353 438 VLVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVD 470 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~--------------------~i~sv~~l~~~~~~ 470 (1622)
..+|||+|+|+|++|.||+ ++|+++||||+.-|
T Consensus 108 f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn 160 (211)
T 3ltl_A 108 FRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHS 160 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 71798426999999999999998588877747888999999999998564148
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=48.14 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 45875132699999999989
Q 000353 438 VLVASEAHSITLAIEGLLGV 457 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~ 457 (1622)
..+|||+|+|+|++|.||+-
T Consensus 113 f~LPGEaQ~IdRile~Fa~r 132 (230)
T 1ku1_A 113 FRLPGESQQIERIIEAFSSA 132 (230)
T ss_dssp CCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 85885199999999999999
No 4
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=47.96 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHCCCCCCC
Q ss_conf 4587513269999999998------------------99988741211114
Q 000353 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVD 470 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~l~~~~~~ 470 (1622)
..+|||+|+|+|++|.||+ ++|+++|||++.-|
T Consensus 104 f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn 154 (347)
T 2r09_A 104 FRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHN 154 (347)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 868972678999999999999985986567854899999999997056405
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=37.91 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHCCCCCCCC
Q ss_conf 4587513269999999998------------------999887412111147
Q 000353 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVDV 471 (1622)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~l~~~~~~~ 471 (1622)
..+|||+|+|+|++|.|++ ++|+++||||+.-|.
T Consensus 100 frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNp 151 (356)
T 1xsz_A 100 FKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNP 151 (356)
T ss_dssp SCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8488508899999999999999739986687438999999999862100386
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=36.06 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 872789999999999999714987678908999999562202544579999999999994
Q 000353 814 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 873 (1622)
Q Consensus 814 ~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 873 (1622)
..+..|+...+.++..+....|..+..-+..++..+-....++...+-..+..++.-++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 898999999999999999998661798999999999999768988999999999999997
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=35.10 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 999999999313935899999999998-5789998435802689999999437991169999999999970389894119
Q 000353 10 DLRALSAEARRRYPAVKDGAEHAILKL-RSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSAL 88 (1622)
Q Consensus 10 dL~~L~~EskRK~~~ik~A~e~al~~L-k~~~~~~~l~~~~~~l~PfllaC~skn~Kl~~iaL~~lqkLi~~~~i~~~~l 88 (1622)
.|..|.....--.+++|..|...|... +.-....+....+.++.+++-+...++.++-..|+.+|..+.. .+++..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEYQV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HCCHHHH
T ss_conf 99999975589878599999999999974166578756799999999998669998999999999999997--5879899
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999981538898248999999999998179977-----88179999999976100346781889999999999999
Q 000353 89 KEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP-----ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1622)
Q Consensus 89 ~~il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~-----i~g~~L~~~L~~C~~L~~~sk~~~vv~~TAaATL~Qlv 162 (1622)
..|+..++++..-.++.|+....+++-.+....... .........+...+.....+.+. .++..|-.++.+++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHH
T ss_conf 9999999998669838899999999999999679744444117889999999999987578846-79999999999999
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=34.94 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=7.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 1893899999999999999
Q 000353 985 ADERPEVRNSAIRTLFQTL 1003 (1622)
Q Consensus 985 ~D~R~EVRn~AiqTLfril 1003 (1622)
.|+.++||..|+.+|-++.
T Consensus 529 ~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 529 GDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp GCSCHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8998627999999999999
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=34.87 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=12.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 018938999999999999998602
Q 000353 984 GADERPEVRNSAIRTLFQTLGSHG 1007 (1622)
Q Consensus 984 ~~D~R~EVRn~AiqTLfril~s~G 1007 (1622)
..|+..+||..|+.++-.+...+|
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 259819999999999999999968
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=34.03 Aligned_cols=160 Identities=12% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCHHHHH
Q ss_conf 45999999999975079--9669999999999999998312001141101379971232000004677999831089985
Q 000353 734 PLWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 811 (1622)
Q Consensus 734 ~iW~~i~~hl~~v~~~~--n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 811 (1622)
.-|+-+...+.....++ +..+|..|...|..++...-.. . ....++ .++..+...+
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~-~--------------------~~~~~~-~ll~~l~~~l 181 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-Q--------------------LQDKSN-EILTAIIQGM 181 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG-G--------------------TGGGHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH-H--------------------HHHHHH-HHHHHHHHHH
T ss_conf 02699999999986267887899999999999999818715-3--------------------476799-9999999986
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-H
Q ss_conf 0387-278999999999999971498767890---8999999562202544579999999999994049988832499-9
Q 000353 812 FSTQ-STDVRAGTLKILLHVLERCGEKLHYSW---PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-E 886 (1622)
Q Consensus 812 ~~~~-~~eIr~~iL~~L~~iL~~~g~~L~sgW---~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~-~ 886 (1622)
.... +.+||..+++++..+++-..+.. ..| +.++.++.....+.+...-..+++++..++..+...+. +.+. .
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~ 259 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPA 259 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 7999989999999999999999999843-23678989999999853799789999999999999999899999-888889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999997706888660598999999979998
Q 000353 887 CVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 918 (1622)
Q Consensus 887 lV~~L~~F~~q~~dlNISLtAi~llW~isD~L 918 (1622)
++..+.... ++.+.++...+++++-.+++..
T Consensus 260 l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 260 LFAITIEAM-KSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998-2886099999999999999988
Done!