Query 000354
Match_columns 1622
No_of_seqs 830 out of 6658
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.7E-77 5.9E-82 769.5 44.4 628 4-671 10-676 (889)
2 PF04852 DUF640: Protein of un 100.0 6.3E-66 1.4E-70 476.6 11.7 122 1476-1597 11-132 (132)
3 PLN03210 Resistant to P. syrin 100.0 5.8E-59 1.3E-63 636.4 60.6 688 137-982 182-909 (1153)
4 PF00931 NB-ARC: NB-ARC domain 100.0 8.4E-38 1.8E-42 368.6 22.0 273 144-420 1-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-29 2.4E-34 350.0 30.3 174 488-675 69-248 (968)
6 PLN00113 leucine-rich repeat r 100.0 5.4E-29 1.2E-33 343.1 27.6 154 510-676 69-225 (968)
7 KOG0618 Serine/threonine phosp 99.8 4.7E-22 1E-26 241.6 -3.4 143 493-638 3-147 (1081)
8 PLN03210 Resistant to P. syrin 99.8 3.5E-19 7.6E-24 245.2 22.7 300 911-1302 610-909 (1153)
9 KOG4194 Membrane glycoprotein 99.8 6.6E-20 1.4E-24 211.4 8.0 173 489-674 53-232 (873)
10 KOG0618 Serine/threonine phosp 99.8 2.4E-20 5.2E-25 226.9 -4.5 462 490-1164 23-489 (1081)
11 KOG0472 Leucine-rich repeat pr 99.7 6.3E-21 1.4E-25 211.1 -13.4 107 1096-1214 433-539 (565)
12 KOG0444 Cytoskeletal regulator 99.7 7.2E-20 1.6E-24 211.2 -5.4 368 511-1015 8-379 (1255)
13 KOG0472 Leucine-rich repeat pr 99.7 5.4E-21 1.2E-25 211.7 -16.2 172 491-678 48-221 (565)
14 KOG4194 Membrane glycoprotein 99.7 3.8E-18 8.2E-23 197.1 5.5 319 488-847 102-427 (873)
15 KOG0444 Cytoskeletal regulator 99.7 1E-18 2.2E-23 201.9 -3.8 318 487-851 54-377 (1255)
16 KOG0617 Ras suppressor protein 99.5 6.6E-16 1.4E-20 152.6 -5.7 167 500-682 23-192 (264)
17 KOG0617 Ras suppressor protein 99.4 4.8E-15 1E-19 146.6 -5.3 155 483-641 28-186 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.2 9.3E-12 2E-16 162.8 7.9 129 532-674 520-653 (889)
19 PRK15387 E3 ubiquitin-protein 99.2 1.1E-10 2.5E-15 149.3 16.6 155 491-679 204-358 (788)
20 PRK15370 E3 ubiquitin-protein 99.2 6.8E-11 1.5E-15 152.6 12.7 138 489-641 179-317 (754)
21 PRK04841 transcriptional regul 99.2 1.5E-09 3.2E-14 149.7 25.5 292 139-467 14-332 (903)
22 KOG4237 Extracellular matrix p 99.1 7.1E-12 1.5E-16 140.3 -1.0 139 498-639 56-199 (498)
23 PRK15387 E3 ubiquitin-protein 99.1 1.3E-09 2.8E-14 139.7 16.8 239 486-767 220-458 (788)
24 KOG4341 F-box protein containi 99.0 5.6E-12 1.2E-16 142.5 -6.3 94 938-1037 162-255 (483)
25 PRK15370 E3 ubiquitin-protein 99.0 6.5E-10 1.4E-14 143.6 11.6 177 486-692 197-374 (754)
26 TIGR03015 pepcterm_ATPase puta 99.0 4E-08 8.6E-13 114.8 23.4 182 157-342 40-242 (269)
27 PRK00411 cdc6 cell division co 99.0 7.5E-08 1.6E-12 119.1 26.3 288 138-446 29-357 (394)
28 COG2909 MalT ATP-dependent tra 99.0 4.6E-08 9.9E-13 121.3 23.4 289 138-467 18-338 (894)
29 KOG4341 F-box protein containi 98.9 2.3E-11 4.9E-16 137.7 -6.8 199 808-1038 162-360 (483)
30 KOG4237 Extracellular matrix p 98.9 1.2E-10 2.6E-15 130.7 -1.9 192 477-682 57-341 (498)
31 PF05729 NACHT: NACHT domain 98.9 6.7E-09 1.5E-13 111.5 11.3 143 161-308 1-163 (166)
32 PF01637 Arch_ATPase: Archaeal 98.9 5.3E-09 1.2E-13 119.4 11.0 193 141-337 1-233 (234)
33 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3E-15 135.7 -3.3 175 490-682 77-253 (722)
34 TIGR02928 orc1/cdc6 family rep 98.9 8.5E-07 1.8E-11 108.6 29.1 290 138-447 14-350 (365)
35 KOG1259 Nischarin, modulator o 98.8 6.4E-10 1.4E-14 119.9 -0.4 136 532-680 281-416 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 5.2E-09 1.1E-13 110.7 5.0 130 532-671 16-148 (175)
37 cd00116 LRR_RI Leucine-rich re 98.7 8.5E-09 1.8E-13 123.9 2.9 177 490-675 25-233 (319)
38 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.9E-14 127.6 -4.2 172 493-682 55-230 (722)
39 TIGR00635 ruvB Holliday juncti 98.6 1.1E-06 2.3E-11 104.7 20.1 189 138-340 3-203 (305)
40 cd00116 LRR_RI Leucine-rich re 98.6 2.6E-08 5.6E-13 119.7 5.8 178 489-676 52-263 (319)
41 PF14580 LRR_9: Leucine-rich r 98.6 1.9E-08 4E-13 106.5 3.6 120 544-676 6-126 (175)
42 PTZ00112 origin recognition co 98.6 7.4E-06 1.6E-10 102.6 24.9 204 138-342 754-986 (1164)
43 PRK00080 ruvB Holliday junctio 98.6 1.7E-06 3.7E-11 103.6 18.3 190 137-340 23-224 (328)
44 COG2256 MGS1 ATPase related to 98.5 5.1E-06 1.1E-10 95.4 20.3 253 137-418 22-300 (436)
45 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.7E-13 110.2 -1.9 105 534-641 306-412 (490)
46 PRK13342 recombination factor 98.4 1.9E-06 4E-11 106.4 14.8 178 138-341 11-199 (413)
47 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 115.6 5.2 173 488-677 116-291 (394)
48 PRK06893 DNA replication initi 98.4 3.1E-06 6.7E-11 95.6 13.2 152 159-339 38-204 (229)
49 PRK07003 DNA polymerase III su 98.3 2E-05 4.3E-10 99.0 20.5 180 137-338 14-221 (830)
50 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3.1E-11 100.8 8.8 290 159-469 13-316 (414)
51 COG4886 Leucine-rich repeat (L 98.3 6.8E-07 1.5E-11 110.7 5.1 183 493-691 98-283 (394)
52 COG1474 CDC6 Cdc6-related prot 98.2 6.7E-05 1.5E-09 89.8 20.9 197 140-339 18-239 (366)
53 PF13401 AAA_22: AAA domain; P 98.2 3.8E-06 8.3E-11 86.1 8.8 116 159-276 3-125 (131)
54 PF13173 AAA_14: AAA domain 98.2 2.4E-06 5.1E-11 87.1 7.0 121 160-300 2-127 (128)
55 KOG3207 Beta-tubulin folding c 98.2 2.1E-07 4.6E-12 106.7 -1.0 186 487-678 120-316 (505)
56 KOG3207 Beta-tubulin folding c 98.2 2.3E-07 4.9E-12 106.5 -0.8 180 486-676 144-339 (505)
57 PRK14949 DNA polymerase III su 98.2 1.5E-05 3.2E-10 102.1 15.1 184 137-338 14-220 (944)
58 PRK12402 replication factor C 98.2 1.7E-05 3.6E-10 96.1 15.1 198 138-337 14-225 (337)
59 PRK14961 DNA polymerase III su 98.2 3.6E-05 7.8E-10 93.3 17.9 178 137-336 14-218 (363)
60 PRK05564 DNA polymerase III su 98.2 3.8E-05 8.3E-10 91.4 17.2 177 139-337 4-189 (313)
61 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.3E-05 2.7E-10 91.0 12.3 169 143-340 21-203 (226)
62 PRK04195 replication factor C 98.2 0.00013 2.9E-09 91.9 22.7 183 137-342 12-206 (482)
63 cd00009 AAA The AAA+ (ATPases 98.1 1.4E-05 3.1E-10 83.5 11.6 122 143-278 2-131 (151)
64 PRK14960 DNA polymerase III su 98.1 2.6E-05 5.6E-10 97.1 15.3 178 137-336 13-217 (702)
65 TIGR02903 spore_lon_C ATP-depe 98.1 0.00023 4.9E-09 91.7 24.3 171 138-309 153-367 (615)
66 PLN03025 replication factor C 98.1 3.3E-05 7.1E-10 92.2 15.3 182 137-334 11-196 (319)
67 PRK12323 DNA polymerase III su 98.1 3E-05 6.6E-10 96.2 14.9 179 137-337 14-224 (700)
68 PRK14963 DNA polymerase III su 98.1 6.7E-05 1.4E-09 93.7 17.5 189 138-335 13-214 (504)
69 KOG2028 ATPase related to the 98.1 5.3E-05 1.2E-09 85.0 14.5 172 139-332 138-330 (554)
70 PLN03150 hypothetical protein; 98.1 8E-06 1.7E-10 105.9 9.4 104 536-640 419-527 (623)
71 PRK15386 type III secretion pr 98.1 6.7E-06 1.5E-10 97.3 7.7 137 1120-1297 50-188 (426)
72 PRK06645 DNA polymerase III su 98.1 9.3E-05 2E-09 92.0 17.8 177 137-335 19-226 (507)
73 COG3899 Predicted ATPase [Gene 98.0 0.00016 3.4E-09 96.3 20.7 261 141-411 2-332 (849)
74 PRK00440 rfc replication facto 98.0 9.9E-05 2.2E-09 88.6 17.4 183 138-337 16-202 (319)
75 PRK14951 DNA polymerase III su 98.0 8.4E-05 1.8E-09 94.1 16.6 196 137-337 14-224 (618)
76 PRK09376 rho transcription ter 98.0 1.3E-05 2.7E-10 93.9 8.5 90 161-251 170-268 (416)
77 PTZ00202 tuzin; Provisional 98.0 0.00092 2E-08 78.7 23.3 165 135-308 258-434 (550)
78 PRK14957 DNA polymerase III su 98.0 7.7E-05 1.7E-09 93.2 15.7 186 137-340 14-223 (546)
79 PRK15386 type III secretion pr 98.0 1.4E-05 3.1E-10 94.5 8.6 70 939-1032 51-120 (426)
80 PRK14956 DNA polymerase III su 98.0 6.4E-05 1.4E-09 91.4 14.0 194 137-334 16-218 (484)
81 PRK14962 DNA polymerase III su 98.0 0.00013 2.8E-09 90.4 17.0 188 137-342 12-223 (472)
82 PLN03150 hypothetical protein; 98.0 1.2E-05 2.6E-10 104.3 8.2 81 560-641 420-503 (623)
83 cd01128 rho_factor Transcripti 98.0 2E-05 4.3E-10 89.1 8.9 92 159-251 15-115 (249)
84 TIGR00678 holB DNA polymerase 98.0 0.00015 3.2E-09 79.6 15.3 155 150-333 3-186 (188)
85 PF13855 LRR_8: Leucine rich r 98.0 6.1E-06 1.3E-10 71.8 3.5 58 581-639 2-60 (61)
86 PRK13341 recombination factor 97.9 7.5E-05 1.6E-09 96.8 14.4 171 137-333 26-212 (725)
87 PRK07994 DNA polymerase III su 97.9 8.5E-05 1.8E-09 94.2 14.3 194 137-338 14-220 (647)
88 PRK07940 DNA polymerase III su 97.9 0.00021 4.7E-09 86.4 17.0 173 139-338 5-213 (394)
89 PRK14964 DNA polymerase III su 97.9 0.00016 3.5E-09 89.1 16.0 180 137-334 11-213 (491)
90 PF13855 LRR_8: Leucine rich r 97.9 1E-05 2.2E-10 70.4 4.1 56 512-568 3-59 (61)
91 PRK07764 DNA polymerase III su 97.9 0.00072 1.6E-08 88.9 22.6 175 137-334 13-217 (824)
92 PF05496 RuvB_N: Holliday junc 97.9 0.00021 4.6E-09 77.4 14.5 173 136-338 21-221 (233)
93 PRK08727 hypothetical protein; 97.9 0.00012 2.7E-09 82.8 13.5 160 147-335 28-201 (233)
94 PRK09112 DNA polymerase III su 97.9 0.00023 5E-09 85.0 16.3 198 136-339 20-241 (351)
95 PRK08691 DNA polymerase III su 97.9 0.00012 2.6E-09 92.2 14.4 178 137-336 14-218 (709)
96 KOG1859 Leucine-rich repeat pr 97.9 2.9E-07 6.3E-12 110.8 -8.1 177 487-679 108-295 (1096)
97 PRK05896 DNA polymerase III su 97.9 0.00016 3.4E-09 90.4 15.3 196 137-340 14-223 (605)
98 PRK07471 DNA polymerase III su 97.9 0.00037 8E-09 83.7 17.6 194 137-338 17-238 (365)
99 PRK14958 DNA polymerase III su 97.9 0.00013 2.9E-09 91.3 14.4 182 137-336 14-218 (509)
100 PF13191 AAA_16: AAA ATPase do 97.9 3.5E-05 7.7E-10 84.3 8.4 47 141-187 2-51 (185)
101 PRK08084 DNA replication initi 97.9 0.00017 3.6E-09 81.8 13.8 165 146-339 31-210 (235)
102 PRK14969 DNA polymerase III su 97.8 0.00043 9.4E-09 87.4 18.4 182 137-340 14-223 (527)
103 TIGR02397 dnaX_nterm DNA polym 97.8 0.00047 1E-08 84.1 18.3 183 138-339 13-219 (355)
104 PF14516 AAA_35: AAA-like doma 97.8 0.0017 3.8E-08 77.5 22.2 201 137-345 9-246 (331)
105 PRK14959 DNA polymerase III su 97.8 0.00026 5.5E-09 89.1 15.3 184 137-342 14-225 (624)
106 PRK14955 DNA polymerase III su 97.8 0.00018 3.9E-09 88.3 13.9 199 137-336 14-226 (397)
107 TIGR01242 26Sp45 26S proteasom 97.8 0.0003 6.4E-09 85.7 15.6 174 137-332 120-328 (364)
108 PRK09087 hypothetical protein; 97.8 0.00029 6.3E-09 79.1 14.0 143 159-339 43-196 (226)
109 TIGR00767 rho transcription te 97.7 0.00011 2.3E-09 86.9 9.8 91 160-251 168-267 (415)
110 KOG2227 Pre-initiation complex 97.7 0.0012 2.7E-08 77.6 18.2 195 137-331 148-361 (529)
111 PRK09111 DNA polymerase III su 97.7 0.00051 1.1E-08 87.4 16.3 198 136-338 21-233 (598)
112 PRK14971 DNA polymerase III su 97.7 0.00072 1.6E-08 86.7 17.4 179 138-335 16-219 (614)
113 KOG0531 Protein phosphatase 1, 97.7 4.7E-06 1E-10 103.4 -2.6 104 508-614 93-197 (414)
114 PRK14954 DNA polymerase III su 97.7 0.00063 1.4E-08 86.7 16.1 201 137-338 14-229 (620)
115 TIGR02639 ClpA ATP-dependent C 97.7 0.00043 9.3E-09 91.8 15.2 158 137-308 180-358 (731)
116 KOG0989 Replication factor C, 97.7 0.00029 6.3E-09 78.4 11.2 184 135-333 32-225 (346)
117 KOG2120 SCF ubiquitin ligase, 97.7 1.7E-06 3.8E-11 94.3 -5.8 112 1072-1190 185-297 (419)
118 PRK14950 DNA polymerase III su 97.6 0.00091 2E-08 86.1 17.5 194 138-338 15-221 (585)
119 KOG1859 Leucine-rich repeat pr 97.6 3.5E-06 7.6E-11 101.8 -4.2 102 559-676 165-267 (1096)
120 PRK14087 dnaA chromosomal repl 97.6 0.00092 2E-08 82.9 16.5 166 161-341 142-322 (450)
121 PRK14952 DNA polymerase III su 97.6 0.00087 1.9E-08 84.8 16.3 184 137-342 11-224 (584)
122 KOG2120 SCF ubiquitin ligase, 97.6 1.8E-06 4E-11 94.1 -6.4 188 1098-1299 185-376 (419)
123 PRK07133 DNA polymerase III su 97.6 0.0011 2.4E-08 84.8 17.1 181 137-339 16-221 (725)
124 PRK03992 proteasome-activating 97.6 0.00064 1.4E-08 83.1 14.7 173 137-331 129-336 (389)
125 PRK14970 DNA polymerase III su 97.6 0.0013 2.8E-08 80.5 17.2 179 137-333 15-204 (367)
126 PHA02544 44 clamp loader, smal 97.6 0.00051 1.1E-08 82.2 13.5 147 137-306 19-171 (316)
127 PRK06305 DNA polymerase III su 97.6 0.0013 2.8E-08 81.7 17.0 179 137-338 15-223 (451)
128 PRK08451 DNA polymerase III su 97.6 0.0012 2.6E-08 82.2 16.6 180 137-338 12-218 (535)
129 KOG0531 Protein phosphatase 1, 97.6 8E-06 1.7E-10 101.3 -2.5 128 509-641 71-199 (414)
130 PF05621 TniB: Bacterial TniB 97.6 0.0014 2.9E-08 74.7 15.3 189 144-333 42-256 (302)
131 PF00308 Bac_DnaA: Bacterial d 97.6 0.0004 8.7E-09 77.7 11.0 160 160-337 34-207 (219)
132 PRK14948 DNA polymerase III su 97.5 0.0017 3.7E-08 83.4 17.7 196 137-338 14-222 (620)
133 KOG1947 Leucine rich repeat pr 97.5 8.3E-06 1.8E-10 104.2 -3.3 95 939-1037 187-282 (482)
134 PRK14953 DNA polymerase III su 97.5 0.0022 4.8E-08 80.1 17.9 181 137-339 14-221 (486)
135 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0012 2.5E-08 88.2 15.8 180 136-330 184-388 (852)
136 CHL00095 clpC Clp protease ATP 97.5 0.00088 1.9E-08 89.9 14.8 157 138-307 178-353 (821)
137 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 58.7 3.7 38 536-573 2-39 (44)
138 PRK05642 DNA replication initi 97.5 0.00058 1.3E-08 77.3 11.1 151 161-339 46-209 (234)
139 PRK11331 5-methylcytosine-spec 97.5 0.00034 7.4E-09 84.1 9.2 107 140-251 176-284 (459)
140 PRK08903 DnaA regulatory inact 97.5 0.0011 2.4E-08 75.1 13.1 164 147-342 28-203 (227)
141 TIGR02881 spore_V_K stage V sp 97.5 0.0012 2.5E-08 76.5 13.5 135 159-309 41-192 (261)
142 TIGR03689 pup_AAA proteasome A 97.5 0.0017 3.6E-08 80.6 15.4 161 137-310 180-380 (512)
143 PRK06647 DNA polymerase III su 97.4 0.0026 5.7E-08 80.7 17.3 177 137-336 14-218 (563)
144 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.4E-09 57.7 4.1 39 581-620 2-40 (44)
145 KOG1909 Ran GTPase-activating 97.4 2.2E-05 4.7E-10 88.5 -1.4 133 532-674 89-252 (382)
146 KOG3665 ZYG-1-like serine/thre 97.4 7.2E-05 1.6E-09 96.5 3.1 87 527-613 140-230 (699)
147 TIGR00362 DnaA chromosomal rep 97.4 0.0035 7.7E-08 77.6 17.3 157 161-335 137-307 (405)
148 TIGR02880 cbbX_cfxQ probable R 97.4 0.0037 8E-08 72.9 16.1 132 162-309 60-209 (284)
149 COG1373 Predicted ATPase (AAA+ 97.4 0.0048 1E-07 75.5 17.6 137 142-302 20-161 (398)
150 CHL00181 cbbX CbbX; Provisiona 97.3 0.0036 7.9E-08 72.9 15.8 133 161-309 60-210 (287)
151 PRK07399 DNA polymerase III su 97.3 0.0041 8.8E-08 73.4 16.2 195 139-338 4-221 (314)
152 KOG3665 ZYG-1-like serine/thre 97.3 8.8E-05 1.9E-09 95.8 2.2 126 487-613 121-260 (699)
153 PRK05563 DNA polymerase III su 97.3 0.005 1.1E-07 78.6 17.8 191 137-335 14-217 (559)
154 KOG2543 Origin recognition com 97.3 0.0013 2.8E-08 75.4 10.8 163 139-307 6-192 (438)
155 PRK00149 dnaA chromosomal repl 97.3 0.006 1.3E-07 76.5 17.5 157 161-335 149-319 (450)
156 PTZ00454 26S protease regulato 97.3 0.0054 1.2E-07 74.7 16.4 172 137-332 143-351 (398)
157 PRK14965 DNA polymerase III su 97.2 0.0029 6.2E-08 81.2 14.5 194 137-338 14-221 (576)
158 PRK14086 dnaA chromosomal repl 97.2 0.0055 1.2E-07 77.0 16.2 154 161-332 315-482 (617)
159 KOG1947 Leucine rich repeat pr 97.2 6.8E-05 1.5E-09 95.7 -0.7 63 1071-1134 242-308 (482)
160 PRK11034 clpA ATP-dependent Cl 97.2 0.0023 5E-08 83.7 12.9 158 138-308 185-362 (758)
161 COG2255 RuvB Holliday junction 97.2 0.019 4.1E-07 63.8 17.6 172 135-335 22-220 (332)
162 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0044 9.6E-08 83.5 15.9 158 137-308 171-349 (852)
163 CHL00176 ftsH cell division pr 97.2 0.007 1.5E-07 77.9 16.6 170 140-331 184-387 (638)
164 PRK10865 protein disaggregatio 97.1 0.0056 1.2E-07 82.2 16.3 158 137-308 176-354 (857)
165 KOG1909 Ran GTPase-activating 97.1 9.5E-05 2.1E-09 83.4 -0.2 179 489-675 93-310 (382)
166 PTZ00361 26 proteosome regulat 97.1 0.0035 7.7E-08 76.7 13.2 153 137-309 181-368 (438)
167 PRK05707 DNA polymerase III su 97.1 0.0099 2.2E-07 70.5 16.4 155 160-338 22-203 (328)
168 TIGR00602 rad24 checkpoint pro 97.1 0.002 4.4E-08 82.0 11.1 51 135-185 80-135 (637)
169 PRK14088 dnaA chromosomal repl 97.1 0.006 1.3E-07 75.7 14.9 158 161-334 131-301 (440)
170 smart00382 AAA ATPases associa 97.1 0.0015 3.3E-08 67.4 8.1 89 161-252 3-91 (148)
171 PF00004 AAA: ATPase family as 97.0 0.0015 3.4E-08 66.7 7.7 69 163-251 1-70 (132)
172 PRK06620 hypothetical protein; 97.0 0.0031 6.7E-08 70.2 9.7 135 161-335 45-186 (214)
173 PRK08769 DNA polymerase III su 97.0 0.018 3.9E-07 67.7 16.5 185 146-338 11-208 (319)
174 PF05673 DUF815: Protein of un 97.0 0.028 6E-07 62.2 16.7 120 136-281 24-155 (249)
175 KOG0731 AAA+-type ATPase conta 97.0 0.0087 1.9E-07 76.0 14.6 173 142-335 317-521 (774)
176 TIGR01241 FtsH_fam ATP-depende 97.0 0.014 3E-07 74.2 16.8 173 137-331 53-259 (495)
177 CHL00195 ycf46 Ycf46; Provisio 96.9 0.034 7.4E-07 69.3 19.0 175 138-332 227-429 (489)
178 KOG1644 U2-associated snRNP A' 96.9 0.0014 3E-08 68.8 5.5 82 510-594 42-127 (233)
179 PF13177 DNA_pol3_delta2: DNA 96.9 0.01 2.2E-07 63.1 12.0 137 143-296 1-162 (162)
180 KOG4579 Leucine-rich repeat (L 96.8 8.8E-05 1.9E-09 72.5 -3.4 62 577-640 50-112 (177)
181 KOG0741 AAA+-type ATPase [Post 96.8 0.021 4.5E-07 68.1 14.9 146 158-328 536-704 (744)
182 PRK08058 DNA polymerase III su 96.8 0.021 4.6E-07 68.3 15.7 145 141-306 7-180 (329)
183 COG1222 RPT1 ATP-dependent 26S 96.8 0.033 7.1E-07 63.9 15.9 186 134-343 146-372 (406)
184 PRK06090 DNA polymerase III su 96.8 0.057 1.2E-06 63.5 18.6 175 147-338 11-201 (319)
185 KOG2982 Uncharacterized conser 96.8 0.00047 1E-08 75.8 1.3 43 809-852 223-265 (418)
186 PRK10536 hypothetical protein; 96.8 0.01 2.2E-07 66.5 11.5 57 137-195 53-109 (262)
187 COG0593 DnaA ATPase involved i 96.8 0.027 5.8E-07 67.5 15.8 132 159-308 112-257 (408)
188 PRK08939 primosomal protein Dn 96.7 0.029 6.3E-07 65.9 15.7 115 143-275 135-259 (306)
189 PRK12422 chromosomal replicati 96.7 0.014 3.1E-07 72.2 13.8 151 161-331 142-306 (445)
190 PRK08116 hypothetical protein; 96.7 0.0035 7.6E-08 72.3 7.6 102 161-277 115-221 (268)
191 KOG4579 Leucine-rich repeat (L 96.7 0.00014 3.1E-09 71.0 -3.3 88 534-622 52-141 (177)
192 PRK08118 topology modulation p 96.6 0.0013 2.8E-08 70.3 2.9 34 162-195 3-37 (167)
193 PRK10865 protein disaggregatio 96.6 0.13 2.8E-06 69.3 22.4 112 140-258 569-691 (857)
194 PRK06871 DNA polymerase III su 96.6 0.05 1.1E-06 64.1 16.3 175 147-335 10-200 (325)
195 KOG0743 AAA+-type ATPase [Post 96.6 0.26 5.5E-06 58.9 21.8 182 145-358 211-432 (457)
196 COG3267 ExeA Type II secretory 96.5 0.094 2E-06 57.9 16.6 187 148-340 40-247 (269)
197 KOG2004 Mitochondrial ATP-depe 96.5 0.059 1.3E-06 66.8 16.6 155 140-308 412-596 (906)
198 KOG2982 Uncharacterized conser 96.5 0.0018 3.9E-08 71.4 3.5 20 1284-1303 247-266 (418)
199 KOG1644 U2-associated snRNP A' 96.5 0.0036 7.7E-08 65.9 5.2 104 559-673 43-150 (233)
200 PRK12608 transcription termina 96.4 0.017 3.6E-07 68.3 11.0 103 148-251 120-232 (380)
201 COG0542 clpA ATP-binding subun 96.4 0.041 8.8E-07 70.8 15.1 105 140-251 492-605 (786)
202 TIGR00763 lon ATP-dependent pr 96.4 0.056 1.2E-06 72.4 17.4 46 140-185 321-372 (775)
203 TIGR02639 ClpA ATP-dependent C 96.4 0.018 3.8E-07 76.7 12.5 102 140-251 455-565 (731)
204 PF10443 RNA12: RNA12 protein; 96.4 0.12 2.6E-06 61.8 17.4 194 144-347 1-287 (431)
205 PRK08181 transposase; Validate 96.3 0.0075 1.6E-07 69.2 6.9 105 153-277 101-209 (269)
206 COG0466 Lon ATP-dependent Lon 96.3 0.012 2.5E-07 73.3 8.8 154 141-308 325-508 (782)
207 TIGR02640 gas_vesic_GvpN gas v 96.3 0.075 1.6E-06 61.4 15.1 57 145-208 8-64 (262)
208 TIGR01243 CDC48 AAA family ATP 96.2 0.058 1.2E-06 72.1 16.0 172 139-332 453-657 (733)
209 KOG0991 Replication factor C, 96.2 0.0088 1.9E-07 63.9 6.5 101 137-251 25-125 (333)
210 PF04665 Pox_A32: Poxvirus A32 96.2 0.0092 2E-07 66.6 7.0 35 162-198 15-49 (241)
211 PRK06964 DNA polymerase III su 96.2 0.15 3.4E-06 60.5 17.3 105 225-338 114-225 (342)
212 PHA00729 NTP-binding motif con 96.2 0.025 5.5E-07 62.4 10.0 35 150-184 7-41 (226)
213 KOG0733 Nuclear AAA ATPase (VC 96.2 0.1 2.2E-06 63.7 15.5 152 137-308 188-374 (802)
214 PRK07993 DNA polymerase III su 96.2 0.11 2.3E-06 62.1 16.0 175 147-335 10-201 (334)
215 COG1223 Predicted ATPase (AAA+ 96.2 0.062 1.4E-06 58.6 12.4 172 138-331 120-318 (368)
216 PRK07261 topology modulation p 96.1 0.014 3.1E-07 62.6 7.9 34 162-195 2-36 (171)
217 PRK12727 flagellar biosynthesi 96.1 0.11 2.4E-06 64.1 16.1 88 160-249 350-438 (559)
218 TIGR03345 VI_ClpV1 type VI sec 96.1 0.016 3.4E-07 77.6 9.5 106 139-251 566-680 (852)
219 PF02562 PhoH: PhoH-like prote 96.0 0.014 3.1E-07 63.6 7.1 121 147-277 8-156 (205)
220 KOG0734 AAA+-type ATPase conta 96.0 0.02 4.4E-07 68.2 8.6 91 141-251 309-408 (752)
221 TIGR01243 CDC48 AAA family ATP 96.0 0.048 1E-06 72.9 13.5 174 138-333 177-382 (733)
222 KOG1514 Origin recognition com 96.0 0.2 4.4E-06 62.5 17.3 168 138-308 395-589 (767)
223 PF00448 SRP54: SRP54-type pro 96.0 0.04 8.6E-07 60.4 10.3 86 161-248 2-92 (196)
224 PRK06921 hypothetical protein; 95.9 0.014 3.1E-07 67.2 7.1 71 159-248 116-186 (266)
225 COG1875 NYN ribonuclease and A 95.9 0.04 8.7E-07 63.3 10.2 130 141-277 226-388 (436)
226 PRK10787 DNA-binding ATP-depen 95.9 0.058 1.3E-06 71.5 13.2 156 139-308 322-506 (784)
227 PRK12377 putative replication 95.9 0.042 9.1E-07 62.3 10.2 75 159-250 100-174 (248)
228 COG0470 HolB ATPase involved i 95.8 0.041 8.9E-07 66.2 10.9 139 141-295 3-168 (325)
229 KOG2123 Uncharacterized conser 95.8 0.00044 9.4E-09 75.4 -5.4 106 557-670 18-124 (388)
230 KOG2035 Replication factor C, 95.8 0.3 6.4E-06 54.3 15.7 227 140-382 14-282 (351)
231 PRK06526 transposase; Provisio 95.8 0.014 3E-07 66.7 6.0 74 160-251 98-171 (254)
232 KOG0730 AAA+-type ATPase [Post 95.8 0.2 4.4E-06 62.2 16.0 153 138-310 433-617 (693)
233 PF01695 IstB_IS21: IstB-like 95.8 0.017 3.7E-07 62.3 6.3 75 159-251 46-120 (178)
234 TIGR03346 chaperone_ClpB ATP-d 95.7 0.034 7.4E-07 75.1 10.5 113 140-259 566-689 (852)
235 PRK04132 replication factor C 95.7 0.14 3.1E-06 67.4 15.6 154 168-338 574-731 (846)
236 TIGR02237 recomb_radB DNA repa 95.7 0.034 7.5E-07 62.0 9.0 48 160-210 12-59 (209)
237 CHL00095 clpC Clp protease ATP 95.7 0.039 8.5E-07 74.3 10.8 115 139-260 509-634 (821)
238 KOG2739 Leucine-rich acidic nu 95.6 0.0057 1.2E-07 67.4 2.0 79 559-640 44-128 (260)
239 smart00763 AAA_PrkA PrkA AAA d 95.6 0.014 3.1E-07 68.6 5.5 47 140-186 52-104 (361)
240 TIGR03499 FlhF flagellar biosy 95.6 0.086 1.9E-06 61.5 11.9 88 159-248 193-281 (282)
241 PF13207 AAA_17: AAA domain; P 95.6 0.011 2.4E-07 59.5 3.9 24 162-185 1-24 (121)
242 COG5238 RNA1 Ran GTPase-activa 95.5 0.0035 7.6E-08 68.4 0.0 107 534-641 29-170 (388)
243 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.036 7.8E-07 63.2 8.3 90 160-250 19-126 (235)
244 PLN00020 ribulose bisphosphate 95.5 0.21 4.6E-06 58.6 14.3 29 158-186 146-174 (413)
245 PRK11034 clpA ATP-dependent Cl 95.5 0.035 7.7E-07 72.9 9.1 102 140-251 459-569 (758)
246 COG2812 DnaX DNA polymerase II 95.5 0.052 1.1E-06 67.1 9.8 188 137-332 14-214 (515)
247 TIGR01425 SRP54_euk signal rec 95.5 0.55 1.2E-05 57.3 18.3 27 159-185 99-125 (429)
248 KOG0735 AAA+-type ATPase [Post 95.5 0.094 2E-06 65.0 11.6 159 161-338 432-616 (952)
249 PRK09183 transposase/IS protei 95.5 0.032 7E-07 64.1 7.6 25 161-185 103-127 (259)
250 KOG0733 Nuclear AAA ATPase (VC 95.4 0.13 2.9E-06 62.8 12.4 130 160-309 545-693 (802)
251 KOG1969 DNA replication checkp 95.4 0.028 6.1E-07 69.8 7.0 75 159-251 325-399 (877)
252 KOG0739 AAA+-type ATPase [Post 95.4 0.31 6.7E-06 54.4 14.1 151 159-331 165-334 (439)
253 PRK07952 DNA replication prote 95.3 0.088 1.9E-06 59.6 10.3 92 144-251 81-174 (244)
254 PRK00771 signal recognition pa 95.3 0.39 8.5E-06 59.1 16.5 86 159-249 94-185 (437)
255 TIGR02012 tigrfam_recA protein 95.3 0.065 1.4E-06 62.8 9.4 85 159-250 54-144 (321)
256 KOG2739 Leucine-rich acidic nu 95.3 0.0084 1.8E-07 66.1 1.9 99 534-634 42-149 (260)
257 KOG0736 Peroxisome assembly fa 95.3 1 2.3E-05 56.9 19.6 94 138-251 671-776 (953)
258 PRK14722 flhF flagellar biosyn 95.2 0.063 1.4E-06 64.3 9.2 89 160-250 137-226 (374)
259 PRK06835 DNA replication prote 95.2 0.049 1.1E-06 64.5 8.2 100 161-276 184-288 (329)
260 TIGR02902 spore_lonB ATP-depen 95.2 0.055 1.2E-06 68.9 9.2 47 138-184 64-110 (531)
261 PRK09270 nucleoside triphospha 95.2 0.093 2E-06 59.4 10.2 29 158-186 31-59 (229)
262 COG2884 FtsE Predicted ATPase 95.2 0.095 2.1E-06 55.0 9.0 119 160-282 28-202 (223)
263 PRK08699 DNA polymerase III su 95.2 0.29 6.3E-06 58.2 14.5 165 160-334 21-202 (325)
264 PRK06696 uridine kinase; Valid 95.2 0.029 6.3E-07 63.2 5.9 43 143-185 2-47 (223)
265 PRK11889 flhF flagellar biosyn 95.2 0.14 3.1E-06 60.8 11.5 89 159-250 240-331 (436)
266 PF07693 KAP_NTPase: KAP famil 95.1 0.63 1.4E-05 55.9 17.8 43 145-187 2-47 (325)
267 cd01393 recA_like RecA is a b 95.1 0.089 1.9E-06 59.5 9.8 49 160-208 19-71 (226)
268 PF08423 Rad51: Rad51; InterP 95.1 0.13 2.9E-06 59.0 11.2 56 161-217 39-98 (256)
269 cd00983 recA RecA is a bacter 95.1 0.081 1.8E-06 62.1 9.3 84 160-250 55-144 (325)
270 PRK09354 recA recombinase A; P 95.0 0.061 1.3E-06 63.6 8.2 84 160-250 60-149 (349)
271 COG1484 DnaC DNA replication p 94.9 0.12 2.6E-06 59.2 10.1 76 159-251 104-179 (254)
272 TIGR02238 recomb_DMC1 meiotic 94.9 0.085 1.8E-06 62.2 8.9 58 160-218 96-157 (313)
273 PRK10733 hflB ATP-dependent me 94.9 0.23 5E-06 65.0 13.8 149 161-331 186-356 (644)
274 cd01120 RecA-like_NTPases RecA 94.8 0.14 3.1E-06 54.2 9.6 40 162-203 1-40 (165)
275 PRK09361 radB DNA repair and r 94.7 0.095 2.1E-06 59.3 8.6 46 160-208 23-68 (225)
276 PF03215 Rad17: Rad17 cell cyc 94.7 0.15 3.1E-06 64.3 10.7 54 141-198 21-79 (519)
277 PLN03187 meiotic recombination 94.7 0.12 2.6E-06 61.5 9.5 58 160-218 126-187 (344)
278 PRK05541 adenylylsulfate kinas 94.7 0.066 1.4E-06 57.9 6.9 36 159-196 6-41 (176)
279 cd01133 F1-ATPase_beta F1 ATP 94.7 0.17 3.7E-06 57.8 10.3 90 161-251 70-175 (274)
280 PRK04296 thymidine kinase; Pro 94.7 0.045 9.7E-07 59.9 5.5 110 161-278 3-117 (190)
281 KOG2228 Origin recognition com 94.6 0.33 7.2E-06 55.5 12.0 166 140-308 25-219 (408)
282 COG0464 SpoVK ATPases of the A 94.5 0.34 7.3E-06 61.9 13.9 132 159-310 275-425 (494)
283 KOG0727 26S proteasome regulat 94.4 1.7 3.7E-05 47.4 16.1 93 139-251 155-260 (408)
284 TIGR02858 spore_III_AA stage I 94.3 0.23 5.1E-06 57.1 10.5 122 149-280 99-232 (270)
285 PRK12723 flagellar biosynthesi 94.3 0.28 6E-06 59.4 11.5 89 159-250 173-265 (388)
286 cd01125 repA Hexameric Replica 94.3 0.28 6.1E-06 56.0 11.1 141 162-302 3-198 (239)
287 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.26 5.7E-06 56.1 10.8 49 159-211 20-68 (237)
288 TIGR02236 recomb_radA DNA repa 94.3 0.18 4E-06 60.0 9.9 57 160-217 95-155 (310)
289 KOG0744 AAA+-type ATPase [Post 94.2 0.087 1.9E-06 59.4 6.4 39 160-198 177-217 (423)
290 TIGR00959 ffh signal recogniti 94.2 0.42 9.2E-06 58.7 13.0 89 159-249 98-192 (428)
291 PHA02244 ATPase-like protein 94.2 0.17 3.7E-06 59.8 9.1 36 148-185 109-144 (383)
292 PRK12724 flagellar biosynthesi 94.2 0.16 3.4E-06 61.3 9.0 83 160-247 223-307 (432)
293 cd02025 PanK Pantothenate kina 94.2 0.18 3.9E-06 56.5 9.0 24 162-185 1-24 (220)
294 PRK05703 flhF flagellar biosyn 94.1 0.23 4.9E-06 61.3 10.5 87 160-248 221-308 (424)
295 TIGR00554 panK_bact pantothena 94.1 0.22 4.8E-06 57.8 9.8 28 158-185 60-87 (290)
296 PRK15455 PrkA family serine pr 94.1 0.058 1.3E-06 66.7 5.2 46 140-185 77-128 (644)
297 COG1618 Predicted nucleotide k 94.1 0.06 1.3E-06 55.0 4.3 27 161-187 6-32 (179)
298 PRK10867 signal recognition pa 94.1 0.36 7.9E-06 59.2 12.0 27 159-185 99-125 (433)
299 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.11 2.4E-06 56.6 6.9 24 162-185 1-24 (183)
300 COG0542 clpA ATP-binding subun 94.0 0.072 1.6E-06 68.6 6.1 160 137-308 168-346 (786)
301 KOG2123 Uncharacterized conser 94.0 0.003 6.6E-08 69.1 -5.2 75 510-588 19-96 (388)
302 COG2607 Predicted ATPase (AAA+ 94.0 0.22 4.7E-06 54.3 8.5 115 137-277 58-183 (287)
303 PLN03186 DNA repair protein RA 94.0 0.16 3.6E-06 60.4 8.5 58 160-218 123-184 (342)
304 PRK14974 cell division protein 93.9 0.4 8.8E-06 56.9 11.6 90 159-251 139-234 (336)
305 cd01121 Sms Sms (bacterial rad 93.9 0.15 3.2E-06 61.6 8.2 86 160-250 82-169 (372)
306 cd03115 SRP The signal recogni 93.9 0.19 4.2E-06 54.1 8.4 25 162-186 2-26 (173)
307 COG0541 Ffh Signal recognition 93.9 2.6 5.7E-05 50.5 17.9 99 148-249 79-192 (451)
308 PRK07132 DNA polymerase III su 93.9 1.3 2.8E-05 51.9 15.4 166 149-337 6-184 (299)
309 TIGR02239 recomb_RAD51 DNA rep 93.8 0.2 4.2E-06 59.4 8.9 59 159-218 95-157 (316)
310 PRK04301 radA DNA repair and r 93.8 0.23 5E-06 59.2 9.6 57 160-217 102-162 (317)
311 COG0563 Adk Adenylate kinase a 93.8 0.11 2.3E-06 56.0 5.9 24 162-185 2-25 (178)
312 PF00154 RecA: recA bacterial 93.7 0.32 6.9E-06 57.0 10.2 84 161-251 54-143 (322)
313 PRK08533 flagellar accessory p 93.7 0.29 6.3E-06 55.3 9.7 53 160-217 24-76 (230)
314 PTZ00035 Rad51 protein; Provis 93.7 0.29 6.2E-06 58.5 10.0 58 160-218 118-179 (337)
315 cd01394 radB RadB. The archaea 93.7 0.24 5.3E-06 55.6 9.0 42 160-203 19-60 (218)
316 PRK12726 flagellar biosynthesi 93.6 0.32 7E-06 57.7 9.9 90 159-250 205-296 (407)
317 COG1102 Cmk Cytidylate kinase 93.6 0.22 4.8E-06 51.0 7.4 45 162-219 2-46 (179)
318 COG1121 ZnuC ABC-type Mn/Zn tr 93.5 0.35 7.7E-06 54.3 9.7 24 161-184 31-54 (254)
319 PRK07667 uridine kinase; Provi 93.5 0.1 2.2E-06 57.4 5.4 37 149-185 4-42 (193)
320 TIGR00064 ftsY signal recognit 93.5 0.44 9.6E-06 55.2 10.9 90 158-250 70-165 (272)
321 PRK04328 hypothetical protein; 93.5 0.3 6.5E-06 56.0 9.5 42 159-202 22-63 (249)
322 PRK06547 hypothetical protein; 93.5 0.099 2.2E-06 56.0 5.2 35 151-185 6-40 (172)
323 COG4088 Predicted nucleotide k 93.4 0.046 1E-06 57.7 2.4 26 161-186 2-27 (261)
324 COG0468 RecA RecA/RadA recombi 93.4 0.44 9.4E-06 54.8 10.3 88 160-250 60-152 (279)
325 PRK05439 pantothenate kinase; 93.4 0.45 9.8E-06 55.7 10.6 82 158-240 84-166 (311)
326 PF06309 Torsin: Torsin; Inte 93.4 0.57 1.2E-05 46.6 9.6 44 141-184 27-77 (127)
327 PF00006 ATP-synt_ab: ATP synt 93.4 0.22 4.8E-06 55.2 7.7 87 161-251 16-117 (215)
328 PF13238 AAA_18: AAA domain; P 93.4 0.068 1.5E-06 54.2 3.5 22 163-184 1-22 (129)
329 KOG0738 AAA+-type ATPase [Post 93.4 0.64 1.4E-05 54.2 11.3 37 158-201 243-279 (491)
330 PRK14723 flhF flagellar biosyn 93.3 0.45 9.8E-06 61.8 11.5 87 160-249 185-273 (767)
331 PRK10463 hydrogenase nickel in 93.3 0.65 1.4E-05 53.5 11.6 97 148-250 92-195 (290)
332 PF13481 AAA_25: AAA domain; P 93.3 0.41 8.8E-06 52.6 9.8 42 161-202 33-82 (193)
333 PF07728 AAA_5: AAA domain (dy 93.2 0.18 4E-06 52.0 6.5 76 163-251 2-77 (139)
334 PF13306 LRR_5: Leucine rich r 93.1 0.24 5.3E-06 50.2 7.2 103 528-636 5-111 (129)
335 KOG0728 26S proteasome regulat 93.0 1.5 3.3E-05 47.8 12.7 146 143-308 151-331 (404)
336 PF00560 LRR_1: Leucine Rich R 93.0 0.039 8.4E-07 36.8 0.6 21 581-601 1-21 (22)
337 PRK05917 DNA polymerase III su 92.9 1.5 3.3E-05 50.7 13.8 130 147-295 5-154 (290)
338 PRK13531 regulatory ATPase Rav 92.9 0.15 3.2E-06 62.6 5.9 50 140-191 21-70 (498)
339 cd01124 KaiC KaiC is a circadi 92.9 0.3 6.6E-06 53.3 8.0 45 162-210 1-45 (187)
340 cd03247 ABCC_cytochrome_bd The 92.9 0.38 8.1E-06 52.1 8.6 25 161-185 29-53 (178)
341 PF00485 PRK: Phosphoribulokin 92.8 0.095 2.1E-06 57.7 3.9 25 162-186 1-25 (194)
342 cd03214 ABC_Iron-Siderophores_ 92.8 0.45 9.8E-06 51.6 9.1 116 160-280 25-161 (180)
343 COG1419 FlhF Flagellar GTP-bin 92.8 0.74 1.6E-05 54.9 11.3 89 159-249 202-291 (407)
344 COG0465 HflB ATP-dependent Zn 92.8 0.72 1.6E-05 58.1 11.7 173 138-332 149-355 (596)
345 PRK06067 flagellar accessory p 92.7 0.58 1.3E-05 53.2 10.3 85 160-249 25-130 (234)
346 KOG1532 GTPase XAB1, interacts 92.7 0.58 1.2E-05 51.8 9.3 63 159-221 18-89 (366)
347 PRK08233 hypothetical protein; 92.6 0.098 2.1E-06 56.9 3.5 26 160-185 3-28 (182)
348 cd01131 PilT Pilus retraction 92.5 0.23 5.1E-06 54.7 6.4 110 161-280 2-112 (198)
349 PRK14721 flhF flagellar biosyn 92.5 0.58 1.3E-05 57.1 10.2 87 160-248 191-278 (420)
350 cd02019 NK Nucleoside/nucleoti 92.4 0.11 2.3E-06 46.4 3.0 23 162-184 1-23 (69)
351 cd01135 V_A-ATPase_B V/A-type 92.4 0.71 1.5E-05 52.7 10.1 91 161-251 70-178 (276)
352 COG4608 AppF ABC-type oligopep 92.4 0.46 9.9E-06 53.5 8.4 119 160-282 39-175 (268)
353 PRK06851 hypothetical protein; 92.4 0.94 2E-05 54.2 11.6 46 157-203 211-256 (367)
354 COG0467 RAD55 RecA-superfamily 92.4 0.66 1.4E-05 53.7 10.3 43 158-202 21-63 (260)
355 PRK06995 flhF flagellar biosyn 92.4 0.47 1E-05 58.8 9.4 87 160-249 256-344 (484)
356 COG5238 RNA1 Ran GTPase-activa 92.3 0.08 1.7E-06 58.2 2.4 152 487-641 29-227 (388)
357 cd03216 ABC_Carb_Monos_I This 92.3 0.17 3.6E-06 54.0 4.8 113 161-281 27-146 (163)
358 cd03228 ABCC_MRP_Like The MRP 92.3 0.35 7.7E-06 52.0 7.4 26 160-185 28-53 (171)
359 PF13671 AAA_33: AAA domain; P 92.3 0.12 2.7E-06 53.5 3.7 24 162-185 1-24 (143)
360 COG0572 Udk Uridine kinase [Nu 92.3 0.14 2.9E-06 56.0 4.0 28 159-186 7-34 (218)
361 COG1428 Deoxynucleoside kinase 92.2 0.23 5E-06 53.5 5.6 26 160-185 4-29 (216)
362 PTZ00301 uridine kinase; Provi 92.2 0.13 2.8E-06 57.0 3.9 26 160-185 3-28 (210)
363 cd00561 CobA_CobO_BtuR ATP:cor 92.2 1.1 2.3E-05 47.1 10.4 116 161-278 3-139 (159)
364 PF03308 ArgK: ArgK protein; 92.2 0.24 5.2E-06 55.3 5.9 57 147-203 14-72 (266)
365 TIGR01069 mutS2 MutS2 family p 92.2 0.18 4E-06 66.7 6.0 188 158-359 320-522 (771)
366 PF08433 KTI12: Chromatin asso 92.2 0.3 6.5E-06 56.3 7.0 26 161-186 2-27 (270)
367 PF14532 Sigma54_activ_2: Sigm 92.2 0.057 1.2E-06 55.7 1.1 43 143-185 2-46 (138)
368 PRK05480 uridine/cytidine kina 92.2 0.13 2.8E-06 57.4 4.0 27 158-184 4-30 (209)
369 KOG0729 26S proteasome regulat 92.1 0.62 1.3E-05 51.0 8.6 48 138-185 176-236 (435)
370 PF13306 LRR_5: Leucine rich r 92.1 0.39 8.4E-06 48.7 7.1 116 508-631 10-129 (129)
371 TIGR03878 thermo_KaiC_2 KaiC d 92.1 0.62 1.3E-05 53.8 9.5 39 160-200 36-74 (259)
372 PRK06762 hypothetical protein; 92.0 0.14 2.9E-06 54.9 3.8 25 160-184 2-26 (166)
373 PRK03839 putative kinase; Prov 92.0 0.13 2.7E-06 55.9 3.5 24 162-185 2-25 (180)
374 KOG3864 Uncharacterized conser 92.0 0.021 4.6E-07 60.4 -2.4 64 1152-1219 102-167 (221)
375 PTZ00494 tuzin-like protein; P 91.9 29 0.00064 41.9 22.3 164 137-308 369-544 (664)
376 cd03223 ABCD_peroxisomal_ALDP 91.9 0.73 1.6E-05 49.2 9.2 25 161-185 28-52 (166)
377 TIGR00235 udk uridine kinase. 91.9 0.15 3.3E-06 56.7 4.1 28 158-185 4-31 (207)
378 TIGR01360 aden_kin_iso1 adenyl 91.9 0.13 2.9E-06 56.2 3.6 26 159-184 2-27 (188)
379 TIGR00708 cobA cob(I)alamin ad 91.9 0.79 1.7E-05 48.6 9.1 118 160-278 5-141 (173)
380 PRK12597 F0F1 ATP synthase sub 91.9 0.69 1.5E-05 57.1 9.9 90 161-251 144-249 (461)
381 PRK09519 recA DNA recombinatio 91.9 0.51 1.1E-05 61.6 9.2 84 160-250 60-149 (790)
382 cd02027 APSK Adenosine 5'-phos 91.8 0.72 1.6E-05 48.3 8.8 24 162-185 1-24 (149)
383 PRK11823 DNA repair protein Ra 91.8 0.36 7.9E-06 60.1 7.6 85 160-249 80-166 (446)
384 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.7 0.58 1.3E-05 48.6 7.9 33 161-196 27-59 (144)
385 cd03281 ABC_MSH5_euk MutS5 hom 91.7 0.19 4.1E-06 56.1 4.5 24 160-183 29-52 (213)
386 KOG1051 Chaperone HSP104 and r 91.7 0.7 1.5E-05 60.8 10.1 102 140-251 563-672 (898)
387 PF06745 KaiC: KaiC; InterPro 91.7 0.44 9.5E-06 53.9 7.6 85 161-249 20-125 (226)
388 PF00560 LRR_1: Leucine Rich R 91.5 0.11 2.3E-06 34.6 1.4 22 536-557 1-22 (22)
389 TIGR02655 circ_KaiC circadian 91.5 0.68 1.5E-05 58.6 9.8 86 159-249 262-363 (484)
390 COG1066 Sms Predicted ATP-depe 91.5 0.4 8.6E-06 56.6 6.9 84 161-250 94-179 (456)
391 PRK00625 shikimate kinase; Pro 91.5 0.15 3.2E-06 54.7 3.3 24 162-185 2-25 (173)
392 KOG3347 Predicted nucleotide k 91.5 0.16 3.5E-06 51.0 3.2 41 161-208 8-48 (176)
393 PRK04040 adenylate kinase; Pro 91.5 0.17 3.8E-06 55.1 3.8 25 161-185 3-27 (188)
394 PRK10416 signal recognition pa 91.4 1.4 3.1E-05 52.2 11.6 28 159-186 113-140 (318)
395 cd00544 CobU Adenosylcobinamid 91.4 0.69 1.5E-05 49.4 8.2 81 162-248 1-82 (169)
396 cd03238 ABC_UvrA The excision 91.4 0.55 1.2E-05 50.5 7.5 118 161-292 22-161 (176)
397 PTZ00088 adenylate kinase 1; P 91.3 0.19 4.1E-06 56.5 4.1 23 163-185 9-31 (229)
398 cd03222 ABC_RNaseL_inhibitor T 91.3 0.56 1.2E-05 50.5 7.5 26 160-185 25-50 (177)
399 TIGR03305 alt_F1F0_F1_bet alte 91.3 0.94 2E-05 55.5 10.2 90 161-251 139-244 (449)
400 KOG2170 ATPase of the AAA+ sup 91.3 0.6 1.3E-05 52.7 7.7 45 141-185 84-135 (344)
401 PF10236 DAP3: Mitochondrial r 91.2 9.6 0.00021 45.2 18.3 46 289-334 258-305 (309)
402 TIGR03881 KaiC_arch_4 KaiC dom 91.2 1.3 2.9E-05 50.1 10.9 40 160-201 20-59 (229)
403 PRK00409 recombination and DNA 91.2 0.68 1.5E-05 61.7 9.6 178 158-359 325-527 (782)
404 PF00910 RNA_helicase: RNA hel 91.2 0.16 3.4E-06 49.9 2.8 23 163-185 1-23 (107)
405 PLN02200 adenylate kinase fami 91.1 0.5 1.1E-05 53.5 7.1 27 159-185 42-68 (234)
406 TIGR03575 selen_PSTK_euk L-ser 91.0 0.5 1.1E-05 56.0 7.3 37 163-200 2-38 (340)
407 KOG0735 AAA+-type ATPase [Post 91.0 4.9 0.00011 50.7 15.6 129 161-309 702-849 (952)
408 TIGR00416 sms DNA repair prote 91.0 0.58 1.3E-05 58.4 8.2 85 160-249 94-180 (454)
409 TIGR00750 lao LAO/AO transport 91.0 0.63 1.4E-05 55.0 8.2 30 157-186 31-60 (300)
410 PF03205 MobB: Molybdopterin g 90.9 0.37 8E-06 49.7 5.4 39 161-200 1-39 (140)
411 PRK08972 fliI flagellum-specif 90.9 0.6 1.3E-05 56.9 7.9 87 161-251 163-264 (444)
412 COG0488 Uup ATPase components 90.8 1 2.2E-05 56.9 10.3 127 161-294 349-511 (530)
413 PRK01184 hypothetical protein; 90.8 1.1 2.3E-05 48.9 9.3 22 161-183 2-23 (184)
414 KOG0927 Predicted transporter 90.8 1.9 4.2E-05 52.6 11.8 118 161-281 417-570 (614)
415 PRK14532 adenylate kinase; Pro 90.7 0.7 1.5E-05 50.5 7.8 23 163-185 3-25 (188)
416 PF07726 AAA_3: ATPase family 90.7 0.18 3.8E-06 50.2 2.7 23 163-185 2-24 (131)
417 PRK13768 GTPase; Provisional 90.7 1 2.2E-05 51.7 9.4 27 160-186 2-28 (253)
418 KOG3864 Uncharacterized conser 90.7 0.035 7.6E-07 58.8 -2.3 69 1149-1219 123-192 (221)
419 COG3640 CooC CO dehydrogenase 90.7 0.46 9.9E-06 51.9 5.9 51 162-220 2-52 (255)
420 PF01583 APS_kinase: Adenylyls 90.6 0.3 6.6E-06 50.9 4.5 34 161-196 3-36 (156)
421 PRK09280 F0F1 ATP synthase sub 90.6 1.3 2.7E-05 54.6 10.4 90 161-251 145-250 (463)
422 PRK00131 aroK shikimate kinase 90.6 0.21 4.5E-06 53.8 3.5 26 160-185 4-29 (175)
423 COG1703 ArgK Putative periplas 90.6 0.47 1E-05 53.8 6.1 56 149-204 38-95 (323)
424 PRK00279 adk adenylate kinase; 90.6 0.9 1.9E-05 50.9 8.6 24 162-185 2-25 (215)
425 PRK12678 transcription termina 90.5 0.81 1.8E-05 56.8 8.5 90 161-251 417-515 (672)
426 PRK07276 DNA polymerase III su 90.5 6.3 0.00014 45.9 15.4 148 146-305 9-172 (290)
427 PLN02924 thymidylate kinase 90.4 0.94 2E-05 50.7 8.4 53 160-213 16-68 (220)
428 cd03246 ABCC_Protease_Secretio 90.4 0.75 1.6E-05 49.5 7.5 25 161-185 29-53 (173)
429 PRK05342 clpX ATP-dependent pr 90.3 0.49 1.1E-05 58.0 6.6 46 140-185 72-133 (412)
430 PRK08149 ATP synthase SpaL; Va 90.3 0.79 1.7E-05 56.0 8.3 87 161-251 152-253 (428)
431 PRK13765 ATP-dependent proteas 90.3 0.51 1.1E-05 60.9 7.0 78 137-218 29-106 (637)
432 CHL00206 ycf2 Ycf2; Provisiona 90.2 0.91 2E-05 63.5 9.4 27 160-186 1630-1656(2281)
433 TIGR00390 hslU ATP-dependent p 90.2 0.74 1.6E-05 55.5 7.8 74 141-214 14-103 (441)
434 COG0003 ArsA Predicted ATPase 90.2 0.49 1.1E-05 55.7 6.2 49 160-210 2-50 (322)
435 PF12775 AAA_7: P-loop contain 90.2 0.26 5.7E-06 57.0 4.0 90 149-251 23-112 (272)
436 cd01122 GP4d_helicase GP4d_hel 90.2 1.6 3.4E-05 51.0 10.6 51 161-214 31-81 (271)
437 PRK14529 adenylate kinase; Pro 90.2 0.83 1.8E-05 51.0 7.7 84 163-251 3-88 (223)
438 cd02020 CMPK Cytidine monophos 90.1 0.22 4.7E-06 51.9 3.0 24 162-185 1-24 (147)
439 TIGR01040 V-ATPase_V1_B V-type 90.1 1.4 3.1E-05 53.7 10.1 91 161-251 142-259 (466)
440 TIGR02655 circ_KaiC circadian 90.0 1.2 2.6E-05 56.4 10.1 48 159-210 20-68 (484)
441 COG3854 SpoIIIAA ncharacterize 90.0 0.98 2.1E-05 48.9 7.6 116 151-278 128-254 (308)
442 cd00227 CPT Chloramphenicol (C 90.0 0.24 5.2E-06 53.5 3.3 25 161-185 3-27 (175)
443 PRK06217 hypothetical protein; 90.0 0.23 4.9E-06 54.1 3.1 34 162-196 3-38 (183)
444 PHA02774 E1; Provisional 89.9 0.61 1.3E-05 58.2 6.9 48 147-198 420-468 (613)
445 cd00267 ABC_ATPase ABC (ATP-bi 89.9 0.67 1.5E-05 49.0 6.6 113 161-281 26-144 (157)
446 PRK09435 membrane ATPase/prote 89.9 2.2 4.8E-05 50.6 11.3 38 149-186 43-82 (332)
447 cd02023 UMPK Uridine monophosp 89.9 0.21 4.6E-06 55.1 2.8 23 162-184 1-23 (198)
448 cd02024 NRK1 Nicotinamide ribo 89.9 0.23 4.9E-06 53.8 2.9 23 162-184 1-23 (187)
449 TIGR02322 phosphon_PhnN phosph 89.8 0.26 5.7E-06 53.4 3.4 25 161-185 2-26 (179)
450 cd02021 GntK Gluconate kinase 89.8 0.23 5E-06 52.1 2.8 23 162-184 1-23 (150)
451 PRK13947 shikimate kinase; Pro 89.8 0.26 5.6E-06 53.0 3.3 24 162-185 3-26 (171)
452 PRK06002 fliI flagellum-specif 89.7 1.3 2.7E-05 54.4 9.3 88 161-251 166-266 (450)
453 PRK13949 shikimate kinase; Pro 89.6 0.26 5.7E-06 52.8 3.2 24 162-185 3-26 (169)
454 PRK11608 pspF phage shock prot 89.6 0.62 1.3E-05 55.7 6.6 44 140-183 7-52 (326)
455 PRK08927 fliI flagellum-specif 89.6 1.6 3.5E-05 53.4 10.1 88 160-251 158-260 (442)
456 KOG0737 AAA+-type ATPase [Post 89.5 3.6 7.8E-05 48.2 12.1 46 140-185 93-152 (386)
457 PRK00889 adenylylsulfate kinas 89.5 0.36 7.9E-06 52.1 4.2 27 159-185 3-29 (175)
458 TIGR02030 BchI-ChlI magnesium 89.4 0.49 1.1E-05 56.4 5.5 47 138-184 3-49 (337)
459 PRK15429 formate hydrogenlyase 89.4 0.85 1.8E-05 60.7 8.4 46 139-184 376-423 (686)
460 PF08298 AAA_PrkA: PrkA AAA do 89.4 0.54 1.2E-05 55.2 5.6 78 140-222 62-152 (358)
461 KOG0652 26S proteasome regulat 89.4 7.2 0.00016 43.0 13.5 50 136-185 168-230 (424)
462 TIGR00764 lon_rel lon-related 89.4 0.77 1.7E-05 59.4 7.6 76 138-217 17-92 (608)
463 PRK10751 molybdopterin-guanine 89.3 0.36 7.9E-06 51.3 3.9 28 159-186 5-32 (173)
464 COG1224 TIP49 DNA helicase TIP 89.3 1.2 2.6E-05 51.5 8.0 54 138-191 38-96 (450)
465 TIGR01039 atpD ATP synthase, F 89.3 2 4.3E-05 52.7 10.6 90 161-251 144-249 (461)
466 PTZ00185 ATPase alpha subunit; 89.3 2.1 4.5E-05 52.8 10.5 91 161-251 190-301 (574)
467 PRK13975 thymidylate kinase; P 89.2 0.33 7.1E-06 53.5 3.7 25 161-185 3-27 (196)
468 COG1120 FepC ABC-type cobalami 89.2 1.4 3E-05 50.0 8.5 26 160-185 28-53 (258)
469 PRK14531 adenylate kinase; Pro 89.1 0.92 2E-05 49.3 7.0 25 161-185 3-27 (183)
470 cd02028 UMPK_like Uridine mono 89.1 0.31 6.6E-06 52.8 3.2 24 162-185 1-24 (179)
471 PRK14530 adenylate kinase; Pro 89.0 0.31 6.8E-06 54.6 3.4 24 162-185 5-28 (215)
472 TIGR00073 hypB hydrogenase acc 89.0 0.6 1.3E-05 51.9 5.6 33 153-185 15-47 (207)
473 TIGR01041 ATP_syn_B_arch ATP s 89.0 1.8 3.9E-05 53.5 10.1 91 161-251 142-250 (458)
474 cd00464 SK Shikimate kinase (S 88.9 0.33 7.2E-06 51.0 3.3 23 163-185 2-24 (154)
475 COG4240 Predicted kinase [Gene 88.9 2.4 5.3E-05 45.9 9.4 82 157-239 47-133 (300)
476 CHL00060 atpB ATP synthase CF1 88.8 1.5 3.2E-05 54.3 9.0 90 161-251 162-274 (494)
477 TIGR00382 clpX endopeptidase C 88.8 1.3 2.8E-05 54.1 8.5 46 140-185 78-141 (413)
478 KOG0726 26S proteasome regulat 88.7 2 4.3E-05 48.1 9.0 93 137-250 183-289 (440)
479 TIGR03263 guanyl_kin guanylate 88.7 0.29 6.3E-06 53.1 2.8 24 161-184 2-25 (180)
480 KOG0740 AAA+-type ATPase [Post 88.6 5.2 0.00011 48.5 13.2 74 158-251 184-257 (428)
481 PF05970 PIF1: PIF1-like helic 88.5 0.9 2E-05 55.3 7.1 41 146-186 8-48 (364)
482 PF13245 AAA_19: Part of AAA d 88.5 0.85 1.9E-05 41.4 5.2 26 159-184 9-35 (76)
483 TIGR00176 mobB molybdopterin-g 88.5 0.58 1.3E-05 49.2 4.7 34 162-196 1-34 (155)
484 TIGR01817 nifA Nif-specific re 88.5 1.6 3.4E-05 56.4 9.6 48 137-184 194-243 (534)
485 COG2019 AdkA Archaeal adenylat 88.5 0.44 9.5E-06 49.1 3.5 25 160-184 4-28 (189)
486 TIGR00150 HI0065_YjeE ATPase, 88.3 0.73 1.6E-05 46.7 5.1 26 161-186 23-48 (133)
487 cd02029 PRK_like Phosphoribulo 88.3 1.7 3.6E-05 49.4 8.4 24 162-185 1-24 (277)
488 PRK13407 bchI magnesium chelat 88.3 0.57 1.2E-05 55.7 5.0 48 137-184 6-53 (334)
489 PRK05057 aroK shikimate kinase 88.3 0.38 8.2E-06 51.7 3.3 25 161-185 5-29 (172)
490 PF00406 ADK: Adenylate kinase 88.3 0.77 1.7E-05 48.1 5.6 21 165-185 1-21 (151)
491 PF00625 Guanylate_kin: Guanyl 88.2 0.51 1.1E-05 51.4 4.2 37 160-198 2-38 (183)
492 PRK12339 2-phosphoglycerate ki 88.2 0.45 9.7E-06 52.2 3.7 26 160-185 3-28 (197)
493 cd01132 F1_ATPase_alpha F1 ATP 88.1 2.3 5E-05 48.7 9.4 95 161-259 70-182 (274)
494 cd00984 DnaB_C DnaB helicase C 88.1 3.4 7.4E-05 47.2 11.3 50 161-213 14-63 (242)
495 PRK05800 cobU adenosylcobinami 88.0 1.3 2.7E-05 47.5 7.0 48 162-215 3-50 (170)
496 COG1936 Predicted nucleotide k 88.0 0.39 8.5E-06 50.0 2.9 20 162-181 2-21 (180)
497 PRK06936 type III secretion sy 87.9 2 4.3E-05 52.7 9.3 88 160-251 162-264 (439)
498 PRK13946 shikimate kinase; Pro 87.9 0.39 8.4E-06 52.3 3.1 25 161-185 11-35 (184)
499 COG0396 sufC Cysteine desulfur 87.9 1.8 4E-05 47.3 7.9 52 238-290 161-216 (251)
500 PF03193 DUF258: Protein of un 87.9 0.6 1.3E-05 49.0 4.2 34 148-184 26-59 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-77 Score=769.45 Aligned_cols=628 Identities=28% Similarity=0.432 Sum_probs=492.8
Q ss_pred cccchhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhHhhhcccc--------
Q 000354 4 GKQFGYFCCYKSNFDHLTKEVEKLRERRESVQHRVDFAKENGEEIEQSVENWLISVDKIVEEAGKFVEDDEE-------- 75 (1622)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~-------- 75 (1622)
.+...++......+.+.++.+..|++.+..++.++++++.+ +.....+..|...+++++|++++.++.+.-
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455777788899999999999999999999999999987 566788999999999999999998753210
Q ss_pred ---------cCCCcccccC-CChhhHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccccccccCCCCccccccHH
Q 000354 76 ---------ANNPCFKVLC-PNLKNRHHLSKKAAKEVKAIVELQDEGNFDRVSVRGISRDRLVAYTESYNEGHEFIESRE 145 (1622)
Q Consensus 76 ---------~~~~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~ 145 (1622)
.+.-|+...+ ..+..-+.+++++-++.+.++.+..++.|..++.... ++ ......+...... +|.+
T Consensus 89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~--~~-~~~e~~~~~~~~~-VG~e 164 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD--PR-EKVETRPIQSESD-VGLE 164 (889)
T ss_pred HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc--ch-hhcccCCCCcccc-ccHH
Confidence 0112222222 2334445666777777777777776655654432111 11 1112222222333 8999
Q ss_pred HHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhh-ccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCCh
Q 000354 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK-EGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESD 224 (1622)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 224 (1622)
..++++...|.+++..+|+|+||||+||||||++++++.. ++.+||.++||+||+.++..+++++|+..++........
T Consensus 165 ~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~ 244 (889)
T KOG4658|consen 165 TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWED 244 (889)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccch
Confidence 9999999999988779999999999999999999999998 999999999999999999999999999999875444332
Q ss_pred ---HHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhhcCcccceEEeccCCHHHHH
Q 000354 225 ---SERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAW 301 (1622)
Q Consensus 225 ---~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~ 301 (1622)
.+....+.+.| +++||+||+||||+..+|+.++.++|....||||++|||++.|+...|++...+++++|+++|||
T Consensus 245 ~~~~~~~~~i~~~L-~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW 323 (889)
T KOG4658|consen 245 KEEDELASKLLNLL-EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAW 323 (889)
T ss_pred hhHHHHHHHHHHHh-ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccH
Confidence 34444555555 59999999999999999999999999998999999999999999966899999999999999999
Q ss_pred HHHHHHhCCC--CCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchh-HHHHHHHHHhh-ccCCCChH-HHHHHHHH
Q 000354 302 SLFSKVVGNC--VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV-WKKALQELRFS-ARNFTGLE-ALLGSTIE 376 (1622)
Q Consensus 302 ~Lf~~~~~~~--~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~-w~~~l~~l~~~-~~~~~~~~-~i~~~~l~ 376 (1622)
.||++.++.. ...+.++++|++|+++|+|+|||++++|+.|+.+...+ |+++.+.+.+. ..+.++++ .++ ++++
T Consensus 324 ~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~-~iLk 402 (889)
T KOG4658|consen 324 DLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL-PILK 402 (889)
T ss_pred HHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH-Hhhh
Confidence 9999999754 23455899999999999999999999999999998775 99999999865 34444444 488 9999
Q ss_pred HHhhcCCchhHHHHHHhhcccCCCCCccHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHhhcccccCCC---CCCeE
Q 000354 377 LIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDD---TADWF 453 (1622)
Q Consensus 377 ~sy~~L~~~~lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~---~~~~~ 453 (1622)
+||+.||.+ +|.||+|||+||+++.++++.|+.+|+|+||+.+....+.+.+.+++|+++|++++|++..+ ...+|
T Consensus 403 lSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 403 LSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred ccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 999999955 99999999999996666669999999999999875555566677888999999999999875 34689
Q ss_pred EechhHHHHHHHHHhh-----hhhhccc--ccccCCcccccccccEEEecccCCCCCCCCCCCCCccEEEccCCCC-CCC
Q 000354 454 SMLGFVRNVAISIASI-----NLMVRND--ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDP-FLH 525 (1622)
Q Consensus 454 ~mHdlv~d~a~~~~~~-----~~~~~~~--~~~~~~~~~~~~~lr~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~-~~~ 525 (1622)
+|||+|||+|.++|++ +-.++.+ +..+.+....+..+|++++.+|.+..++....+++|++|.+..|.. ...
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 9999999999999993 2233332 3444566666788999999999999999999999999999999874 577
Q ss_pred CChhhhcCCCCccEEEecCC-cCcccCccCCCCCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchhhhcCCC
Q 000354 526 IPDNFFAGMPKLRVLVLTRM-KLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQ 604 (1622)
Q Consensus 526 lp~~~f~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~ 604 (1622)
++..+|..++.||||||++| .+..+|.+|+.|.|| |||+|+++.|..||.++++|++
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L----------------------ryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL----------------------RYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh----------------------hcccccCCCccccchHHHHHHh
Confidence 88888999999999999975 345777766555554 5555555667777888888888
Q ss_pred CCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEe
Q 000354 605 LKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1622)
Q Consensus 605 L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 671 (1622)
|.+|++..+..+..+| +++..|++||+|.+...... .......++.+|.+|+.+.+.
T Consensus 620 L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hheecccccccccccc-chhhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheee
Confidence 8888887776555554 33556888888877544311 123445666666777766664
No 2
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=100.00 E-value=6.3e-66 Score=476.59 Aligned_cols=122 Identities=74% Similarity=1.360 Sum_probs=119.0
Q ss_pred CCCCCCchhhhhhhhhHHHHHHhhhcCCCCCCCCCCCchhHHHHHHhcCCCCceeEeecCCcCCCCCCCCCCCCCchhhh
Q 000354 1476 QHPMTPSRYELQKRRDWNTFGQYLKNQRPPVPLSQCSSSHVLEFLRYLDPFGKIKVHLQGCMFYGQPNPPAPCTCPLRQA 1555 (1622)
Q Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1555 (1622)
++++++||||+|||||||||+|||+||+||++|++|+|+||++||+|+|||||||||.++|+|||+|+||+||+||+|||
T Consensus 11 ~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrqA 90 (132)
T PF04852_consen 11 SPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQA 90 (132)
T ss_pred CCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHHHHHH
Q 000354 1556 WGSLDALIGRLRAAYEENGGSPETNPFASGEIRVYLREVREC 1597 (1622)
Q Consensus 1556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1597 (1622)
||||||||||||||||||||.||+||||+||||+|||+|||+
T Consensus 91 wGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~ 132 (132)
T PF04852_consen 91 WGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS 132 (132)
T ss_pred hccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.8e-59 Score=636.42 Aligned_cols=688 Identities=21% Similarity=0.257 Sum_probs=457.5
Q ss_pred CccccccHHHHHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe---cCC----------
Q 000354 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQT---------- 201 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~---------- 201 (1622)
+..+++||+..++++..+|. .+++++|+||||||+||||||+++|++.. .+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 44568999999999998875 56789999999999999999999999876 67998888742 111
Q ss_pred -cC-HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchh
Q 000354 202 -PD-LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1622)
Q Consensus 202 -~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v 279 (1622)
++ ...++++++..+....... ......+.+++ .++|+||||||||+.++|+.+.....+.++||+||||||++.+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 1234445554442221111 01123344555 4899999999999999999998777777899999999999999
Q ss_pred hhhcCcccceEEeccCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000354 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGN-CVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1622)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~w~~~l~~l~ 358 (1622)
+. .++...+|+|+.|+++|||+||+++|+. ..+..++.+++++|+++|+|+||||+++|++|++++..+|+.+++++.
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 87 3777889999999999999999999964 334556889999999999999999999999999998777999999998
Q ss_pred hhccCCCChHHHHHHHHHHHhhcCCchhHHHHHHhhcccCCCCCccHHHHHHHhhcccccccchhHHHHHHHHHHHHHHH
Q 000354 359 FSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGL 438 (1622)
Q Consensus 359 ~~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L 438 (1622)
... ..++. .+|++||++|++++.|.||+++|+|+. +..++ .+..|++.+.+.. ...++.|
T Consensus 416 ~~~-----~~~I~-~~L~~SYd~L~~~~~k~~Fl~ia~ff~--~~~~~-~v~~~l~~~~~~~-----------~~~l~~L 475 (1153)
T PLN03210 416 NGL-----DGKIE-KTLRVSYDGLNNKKDKAIFRHIACLFN--GEKVN-DIKLLLANSDLDV-----------NIGLKNL 475 (1153)
T ss_pred hCc-----cHHHH-HHHHHhhhccCccchhhhhheehhhcC--CCCHH-HHHHHHHhcCCCc-----------hhChHHH
Confidence 321 12466 999999999987546999999999998 44443 3555666554321 1128899
Q ss_pred hhcccccCCCCCCeEEechhHHHHHHHHHhhhhhhcccccccCC---------cccccccccEEEecccCCCCCC--CC-
Q 000354 439 KDTCLLHDDDTADWFSMLGFVRNVAISIASINLMVRNDALIEWP---------NKDMLKNCIAIFLHDINTGELP--EG- 506 (1622)
Q Consensus 439 ~~~sll~~~~~~~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~lr~Lsl~~~~~~~lp--~~- 506 (1622)
++++|++.. .+.|+|||++|+||++++++..........-|. .....++++.+++....+.++. ..
T Consensus 476 ~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999875 357999999999999998763211111111111 1112345666666554444321 11
Q ss_pred -CCCCCccEEEccCCC------CCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc-cccCC
Q 000354 507 -LEYPHLTSLCMNPKD------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1622)
Q Consensus 507 -~~~~~Lr~L~L~~n~------~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~ 578 (1622)
.++++|+.|.+..+. ....+|..+..-...||+|++.++.+..+|..+ .+.+|+.|++++|.+..+ ..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 156667766665432 112344443222245677777666666666665 456666777766666655 55666
Q ss_pred CCCCCEEEccCC-CCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChh
Q 000354 579 LKNLEILSLCCS-DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1622)
Q Consensus 579 L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1622)
+.+|++|+|+++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.....+ +.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~L-----------p~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEIL-----------PT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCcc-----------CC
Confidence 666777777654 355555 3666666777777666666666665 666666666666665432111 11
Q ss_pred hhCCCCCCCEEEEeecCCC-CCCcccccccccceEEEeccccCCCCCCCCcccccccCCCCcchHHHHhhccccceeecc
Q 000354 658 ELSILSHLTTLEIHIRDAV-ILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLD 736 (1622)
Q Consensus 658 ~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~ 736 (1622)
.+ ++++|+.|+++++... .+| ....+|+.|++.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p---------------------------------------------~~~~nL~~L~L~ 733 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFP---------------------------------------------DISTNISWLDLD 733 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccc---------------------------------------------cccCCcCeeecC
Confidence 11 4555566555543211 000 012234455554
Q ss_pred CCCCCcccccccCcCCcccccccccccccceeeecccccccccCcCCCcCeEeccccccccccccCCCcccccccccEEE
Q 000354 737 EVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIK 816 (1622)
Q Consensus 737 ~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~~~~L~~L~ 816 (1622)
++. .... |.. ..+++|++|.+.++...... . .+..+ .......+++|+.|.
T Consensus 734 ~n~-i~~l-P~~--~~l~~L~~L~l~~~~~~~l~-~----------------------~~~~l--~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 734 ETA-IEEF-PSN--LRLENLDELILCEMKSEKLW-E----------------------RVQPL--TPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCc-cccc-ccc--ccccccccccccccchhhcc-c----------------------ccccc--chhhhhccccchhee
Confidence 432 1111 111 13445555544443211000 0 00000 001122357899999
Q ss_pred EecCCCCCCCCChhhccCCCCccEEEeccCcccchhhccCCCCCCCCCcccccccccccEEEccCCCCccccccccCCCC
Q 000354 817 VRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSD 896 (1622)
Q Consensus 817 L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~ 896 (1622)
+.+|+.+..+|. .+.++++|+.|+|++|..++.++. ...+++|+.|+|++|..+..++.
T Consensus 785 Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~------ 843 (1153)
T PLN03210 785 LSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD------ 843 (1153)
T ss_pred CCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc------
Confidence 999988888865 467899999999999998887763 12578899999999998876532
Q ss_pred CCCCCCCCCccccccccccceeccccccccccCCCCCCCCCCCccccEEEEeccCCccccCCchhhhhccCCcEEEEecc
Q 000354 897 ELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC 976 (1622)
Q Consensus 897 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C 976 (1622)
..++|+.|++.++.+..+... ...+++|+.|++.+|++|+.+++ ....+++|+.|++++|
T Consensus 844 -------------~~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 -------------ISTNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred -------------cccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 246789999998877654331 23688999999999999998754 2567899999999999
Q ss_pred CCccee
Q 000354 977 TVLEEI 982 (1622)
Q Consensus 977 ~~L~~l 982 (1622)
++|+.+
T Consensus 904 ~~L~~~ 909 (1153)
T PLN03210 904 GALTEA 909 (1153)
T ss_pred cccccc
Confidence 988765
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.4e-38 Score=368.61 Aligned_cols=273 Identities=33% Similarity=0.492 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHcC--CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC-
Q 000354 144 RESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC- 220 (1622)
Q Consensus 144 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~- 220 (1622)
|+.++++|.+.|.+ ++.++|+|+||||+||||||++++++...+.+|+.++||+++...+...++++|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997778999999999999999999999999999987733
Q ss_pred ---CCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhhcCcc-cceEEeccCC
Q 000354 221 ---EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHC-QNNYCVSVLN 296 (1622)
Q Consensus 221 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~~~~-~~~~~l~~L~ 296 (1622)
..........+.+.+ .++++||||||||+...|+.+...++....|++||||||+..++.. ++. ...++|++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS-LGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT-HHSCEEEEECSS--
T ss_pred cccccccccccccchhhh-ccccceeeeeeecccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 234445556666666 4789999999999999999998888877789999999999998874 443 6789999999
Q ss_pred HHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCC-chhHHHHHHHHHhhccCCC-ChHHHHH
Q 000354 297 KEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLPIAILTVARTLRNKP-LFVWKKALQELRFSARNFT-GLEALLG 372 (1622)
Q Consensus 297 ~~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~-~~~w~~~l~~l~~~~~~~~-~~~~i~~ 372 (1622)
.+||++||++.++... ..+..++.+++|+++|+|+||||+++|++|+.+. ..+|+.+++.+........ ....++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~- 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF- 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9999999999996433 3445567899999999999999999999996554 3449999999885543332 245577
Q ss_pred HHHHHHhhcCCchhHHHHHHhhcccCCCCCccHHHHHHHhhccccccc
Q 000354 373 STIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFED 420 (1622)
Q Consensus 373 ~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~ 420 (1622)
.++.+||+.|+++ +|.||+|||+||+++.++.+.++++|+++|++..
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999997 8999999999999777888999999999999865
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.1e-29 Score=349.97 Aligned_cols=174 Identities=24% Similarity=0.425 Sum_probs=135.2
Q ss_pred ccccEEEecccCCCC-CCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCc-ccCccCCCCCCCcEEE
Q 000354 488 KNCIAIFLHDINTGE-LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLPNLESLC 564 (1622)
Q Consensus 488 ~~lr~Lsl~~~~~~~-lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~ 564 (1622)
.+++.|++.++.+.. ++..+ .+++|++|++++|.+.+.+|..+|.++++|++|+|++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 357888888877554 33333 78888999998888877888888888888999999888886 4453 5678888999
Q ss_pred ccCCCCCC-c-cccCCCCCCCEEEccCCCCc-ccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000354 565 LDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 565 L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1622)
|++|.+.. + ..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 98888753 3 56888888999998888775 67888888888899988888755567766 888888888888888775
Q ss_pred cccccccccccccChhhhCCCCCCCEEEEeecCC
Q 000354 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1622)
Q Consensus 642 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1622)
...+..++++++|+.|++++|..
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCcee
Confidence 23446677888888888876654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.4e-29 Score=343.13 Aligned_cols=154 Identities=22% Similarity=0.329 Sum_probs=132.5
Q ss_pred CCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCc-ccCccCC-CCCCCcEEEccCCCCCCccccCCCCCCCEEEc
Q 000354 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSL 587 (1622)
Q Consensus 510 ~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 587 (1622)
.+++.|++++|.+.+.++.. |..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+......+.+.+|++|+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 47899999999887777665 689999999999999997 7888765 99999999999999876533478999999999
Q ss_pred cCCCCc-ccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCC
Q 000354 588 CCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLT 666 (1622)
Q Consensus 588 s~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 666 (1622)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 999987 78999999999999999999855677776 899999999999999876 33457888999999
Q ss_pred EEEEeecCCC
Q 000354 667 TLEIHIRDAV 676 (1622)
Q Consensus 667 ~L~l~~~~~~ 676 (1622)
.|++++|...
T Consensus 216 ~L~L~~n~l~ 225 (968)
T PLN00113 216 WIYLGYNNLS 225 (968)
T ss_pred EEECcCCccC
Confidence 9999877643
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=4.7e-22 Score=241.62 Aligned_cols=143 Identities=28% Similarity=0.370 Sum_probs=118.3
Q ss_pred EEecccCCCCCCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCC
Q 000354 493 IFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILG 571 (1622)
Q Consensus 493 Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~ 571 (1622)
+++++....-+|..+ ....+..|++..|.+ ...|-.+..+.-+|++|++++|.+..+|..|..+.+|+.|+++.|.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 445556666677665 344478888888765 444555556666699999999999999999999999999999999998
Q ss_pred Cc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCC
Q 000354 572 DI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1622)
Q Consensus 572 ~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1622)
.+ .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. ...+|.- +..++.+..+..++|
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 77 78999999999999999999999999999999999999987 7788876 777888877777766
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=3.5e-19 Score=245.21 Aligned_cols=300 Identities=21% Similarity=0.281 Sum_probs=182.5
Q ss_pred cccccceeccccccccccCCCCCCCCCCCccccEEEEeccCCccccCCchhhhhccCCcEEEEeccCCcceeeccccCcc
Q 000354 911 FPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEE 990 (1622)
Q Consensus 911 ~p~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C~~L~~l~~~~~~~~ 990 (1622)
+.+|+.|++.++.+..+|... ..+++|+.|++++|..++.++. +..+++|+.|++.+|..+..++..
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~-----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~s----- 676 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGV-----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSS----- 676 (1153)
T ss_pred ccCCcEEECcCcccccccccc-----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchh-----
Confidence 578999999998888888643 2688999999999988888743 567899999999999998877532
Q ss_pred cccccccCccCeecccCCCccccccCCcccccCCCcceEEEecCCcceeeccccccCCCcchhcccCcccccchhhhhhc
Q 000354 991 ATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKV 1070 (1622)
Q Consensus 991 ~~~~~~lp~L~~L~L~~c~~L~~l~~~~~~~~~~sL~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1622)
...+++|+.|.+++|..++.+|... .+++|+.|.+++|..++.++. .
T Consensus 677 ---i~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~---------------------------~ 723 (1153)
T PLN03210 677 ---IQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD---------------------------I 723 (1153)
T ss_pred ---hhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------------------------c
Confidence 2358899999999999999998754 468999999999988876632 1
Q ss_pred ccCceeEEecCcccccccccCCCccccccccEEEEeeCCCCCccHHHHhhcCccceEEEEccceeEEeccchhhhccccc
Q 000354 1071 GSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKL 1150 (1622)
Q Consensus 1071 ~~~L~~L~L~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~l~~~~~~~l~~l~sL~~L~I~c~~l~~i~~~~~~~~~~~~l 1150 (1622)
+.+|++|+++++.+..+|... .+++|+.|.+.+|....+... +..+ ... ....+
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~-~~~l-------------~~~--------~~~~~ 777 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWER-VQPL-------------TPL--------MTMLS 777 (1153)
T ss_pred cCCcCeeecCCCccccccccc----cccccccccccccchhhcccc-cccc-------------chh--------hhhcc
Confidence 357888888888877765432 366777777766542111100 0000 000 00123
Q ss_pred cccceeecccccccchhhccCccccccccccceeEeeccCCccccCCCCCccCCccEEEEeccCCCccccchhhhhhccc
Q 000354 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQ 1230 (1622)
Q Consensus 1151 ~sL~~L~i~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~L~s 1230 (1622)
++|+.|++++|+.+..+| ..+..+++|+.|+|.+|.++..+|... .+++|++|++++|.++..++. ..++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP----~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP----SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTN 847 (1153)
T ss_pred ccchheeCCCCCCccccC----hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccc
Confidence 445555555555444442 223445555555555555555554443 455555555555555544422 1234
Q ss_pred ccEEEEeccccccccccccccccccccccccccccccccccccccccCCCccccCCCcceEEeccCcccccc
Q 000354 1231 LMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIF 1302 (1622)
Q Consensus 1231 L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~sl~~~~~~~~l~sL~~L~I~~Cp~L~sl 1302 (1622)
|+.|+++++ .+++++.. ...+++|+.|.+.+|++|++++... ..+++|+.|++.+|++|+.+
T Consensus 848 L~~L~Ls~n-~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 848 ISDLNLSRT-GIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCEeECCCC-CCccChHH-------HhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCcccccc
Confidence 555555543 23333221 1134555555555555555554432 24455555555555555543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=6.6e-20 Score=211.39 Aligned_cols=173 Identities=19% Similarity=0.275 Sum_probs=114.2
Q ss_pred cccEEEecccCCCCCCCC----CCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEE
Q 000354 489 NCIAIFLHDINTGELPEG----LEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLC 564 (1622)
Q Consensus 489 ~lr~Lsl~~~~~~~lp~~----~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 564 (1622)
..+.+..+.+.+..+... .-.+.-++|++++|.+ ..+...+|.++++|+.+++.+|.+..+|.......||+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 445555555555443211 1244556788887765 34444556778888888888888888877666666788888
Q ss_pred ccCCCCCCc--cccCCCCCCCEEEccCCCCcccchh-hhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000354 565 LDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 565 L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1622)
|.+|.|..+ +.+..++.||.||||.|.|.++|.. +..=.++++|+|++|. ++.+-.+.+.++.+|-.|.++.|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc
Confidence 888877777 5677777788888877777776543 4455677777777766 67666666667777777777766665
Q ss_pred cccccccccccccChhhhCCCCCCCEEEEeecC
Q 000354 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1622)
Q Consensus 642 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 674 (1622)
...+..+++|++|+.|++..|.
T Consensus 211 -----------tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 211 -----------TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred -----------ccCHHHhhhcchhhhhhccccc
Confidence 3344556666666666665443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.4e-20 Score=226.94 Aligned_cols=462 Identities=22% Similarity=0.246 Sum_probs=286.3
Q ss_pred ccEEEecccCCCCCCCCC--CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccC
Q 000354 490 CIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQ 567 (1622)
Q Consensus 490 lr~Lsl~~~~~~~lp~~~--~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 567 (1622)
+.+|++..|..-..|-.. ++-+|++|+++.|.. ...|..+ ..+.+|+.|+++.|.+..+|.++.++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 556666666655545222 455599999998876 5666664 788999999999999999999999999999999999
Q ss_pred CCCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccccc
Q 000354 568 CILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1622)
Q Consensus 568 ~~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 646 (1622)
|.+..+ .++..+++|++|++++|.+...|.-+..+..+..+..++|..+..++. +. .+++++..|.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----
Confidence 999877 789999999999999999999999999999999999999854555443 22 667777666554
Q ss_pred ccccccccChhhhCCCCCCCEEEEeecCCCCCCcccccccccceEEEeccccCCCCCCCCcccccccCCCCcchHHHHhh
Q 000354 647 LNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMN 726 (1622)
Q Consensus 647 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 726 (1622)
...+.++..+++ .|++..|.+..+. + ..
T Consensus 170 ------~~~~~~i~~l~~--~ldLr~N~~~~~d----l----------------------------------------s~ 197 (1081)
T KOG0618|consen 170 ------GSFLIDIYNLTH--QLDLRYNEMEVLD----L----------------------------------------SN 197 (1081)
T ss_pred ------cchhcchhhhhe--eeecccchhhhhh----h----------------------------------------hh
Confidence 233445555555 5676665543110 0 11
Q ss_pred ccccceeeccCCCCCcccccccCcCCcccccccccccccceeeecccccccccCcCCCcCeEeccccccccccccCCCcc
Q 000354 727 LKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTA 806 (1622)
Q Consensus 727 l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~ 806 (1622)
+.+|+.|...... +..+. ..-++|+.|+...|+..+. ...
T Consensus 198 ~~~l~~l~c~rn~-----ls~l~-~~g~~l~~L~a~~n~l~~~----------------------------------~~~ 237 (1081)
T KOG0618|consen 198 LANLEVLHCERNQ-----LSELE-ISGPSLTALYADHNPLTTL----------------------------------DVH 237 (1081)
T ss_pred ccchhhhhhhhcc-----cceEE-ecCcchheeeeccCcceee----------------------------------ccc
Confidence 2222222221110 00000 0124455555554442211 111
Q ss_pred cccccccEEEEecCCCCCCCCChhhccCCCCccEEEeccCcccchhhccCCCCCCCCCcccccccccccEEEccCCCCcc
Q 000354 807 EFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLT 886 (1622)
Q Consensus 807 ~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~ 886 (1622)
..-.+|+.++++. .++..+| .++..+++|+.|.+.++. +..++. .+..
T Consensus 238 p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~------------ri~~---------------- 285 (1081)
T KOG0618|consen 238 PVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALPL------------RISR---------------- 285 (1081)
T ss_pred cccccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhHH------------HHhh----------------
Confidence 2235677777766 4566665 567777888887776543 222221 0111
Q ss_pred ccccccCCCCCCCCCCCCCccccccccccceeccccccccccCCCCCCCCCCCccccEEEEeccCCccccCCchhhhhcc
Q 000354 887 SFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFV 966 (1622)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~ 966 (1622)
..+|+.|.+..|.+..+..... .+.+|++|++.. ++|.+++. ..+.-+.
T Consensus 286 ------------------------~~~L~~l~~~~nel~yip~~le-----~~~sL~tLdL~~-N~L~~lp~-~~l~v~~ 334 (1081)
T KOG0618|consen 286 ------------------------ITSLVSLSAAYNELEYIPPFLE-----GLKSLRTLDLQS-NNLPSLPD-NFLAVLN 334 (1081)
T ss_pred ------------------------hhhHHHHHhhhhhhhhCCCccc-----ccceeeeeeehh-ccccccch-HHHhhhh
Confidence 2334444444444433332111 345566666655 44555433 2233222
Q ss_pred C-CcEEEEeccCCcceeeccccCcccccccccCccCeecccCCCccccccCCcccccCCCcceEEEecCCcceeeccccc
Q 000354 967 Q-LQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFL 1045 (1622)
Q Consensus 967 s-L~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~l~~~~~~~~~~sL~~L~I~~C~~L~~l~~~~~ 1045 (1622)
. |+.|+++. ..+...+. .....++.|+.|.+-++.--....+.. ..+..|+.|++++ ..|..||..
T Consensus 335 ~~l~~ln~s~-n~l~~lp~-------~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsy-NrL~~fpas-- 401 (1081)
T KOG0618|consen 335 ASLNTLNVSS-NKLSTLPS-------YEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSY-NRLNSFPAS-- 401 (1081)
T ss_pred HHHHHHhhhh-cccccccc-------ccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeecc-cccccCCHH--
Confidence 2 55555543 22333321 111236677777777663222222211 1346788888876 445544321
Q ss_pred cCCCcchhcccCcccccchhhhhhcccCceeEEecCcccccccccCCCccccccccEEEEeeCCCCCccHHHHhhcCccc
Q 000354 1046 SFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLE 1125 (1622)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~l~~~~~~~l~~l~sL~ 1125 (1622)
...-+..|++|+++||.++.++.... .+..|++|...+|.+..+| .+..++.|+
T Consensus 402 ---------------------~~~kle~LeeL~LSGNkL~~Lp~tva---~~~~L~tL~ahsN~l~~fP--e~~~l~qL~ 455 (1081)
T KOG0618|consen 402 ---------------------KLRKLEELEELNLSGNKLTTLPDTVA---NLGRLHTLRAHSNQLLSFP--ELAQLPQLK 455 (1081)
T ss_pred ---------------------HHhchHHhHHHhcccchhhhhhHHHH---hhhhhHHHhhcCCceeech--hhhhcCcce
Confidence 11225689999999999999985542 3788999999999999999 677799999
Q ss_pred eEEEEccceeEEeccchhhhccccc-cccceeeccccccc
Q 000354 1126 KLELRWSSYKQIFSYKEAEKHAGKL-THIKSLKLWELSDL 1164 (1622)
Q Consensus 1126 ~L~I~c~~l~~i~~~~~~~~~~~~l-~sL~~L~i~~c~~L 1164 (1622)
.++|+||++..+.-.. ..+ +.|++|+++|...+
T Consensus 456 ~lDlS~N~L~~~~l~~------~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPE------ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred EEecccchhhhhhhhh------hCCCcccceeeccCCccc
Confidence 9999999998775422 123 78999999997754
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=6.3e-21 Score=211.12 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=70.6
Q ss_pred ccccccEEEEeeCCCCCccHHHHhhcCccceEEEEccceeEEeccchhhhccccccccceeecccccccchhhccCcccc
Q 000354 1096 LFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLD 1175 (1622)
Q Consensus 1096 ~l~~L~~L~L~~c~l~~~~~~~l~~l~sL~~L~I~c~~l~~i~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~~ 1175 (1622)
.+++|..|++++|.+..+|.++. .+..|+.|+|+.|++..++. +...+-.|+.+-++ -..+.+++ ++++
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP~e~~-~lv~Lq~LnlS~NrFr~lP~------~~y~lq~lEtllas-~nqi~~vd---~~~l 501 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLPEEMG-SLVRLQTLNLSFNRFRMLPE------CLYELQTLETLLAS-NNQIGSVD---PSGL 501 (565)
T ss_pred hhhcceeeecccchhhhcchhhh-hhhhhheecccccccccchH------HHhhHHHHHHHHhc-cccccccC---hHHh
Confidence 46788888888888888887554 46778888888777766654 11112223333222 23455553 3455
Q ss_pred ccccccceeEeeccCCccccCCCCCccCCccEEEEeccC
Q 000354 1176 SVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCK 1214 (1622)
Q Consensus 1176 ~~l~sL~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~ 1214 (1622)
..+.+|..|++.+. .+..+|+.++++++|++|+|++.|
T Consensus 502 ~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 66777888888763 467788888888888888888754
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=7.2e-20 Score=211.24 Aligned_cols=368 Identities=20% Similarity=0.241 Sum_probs=188.0
Q ss_pred CccEEEccCCCCC-CCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc-cccCCCCCCCEEEcc
Q 000354 511 HLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLC 588 (1622)
Q Consensus 511 ~Lr~L~L~~n~~~-~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls 588 (1622)
-.|-.++++|.++ ...|.++ ..|.+++.|.|..+.+..+|+.++.|.+|+.|.+.+|++..+ ..++.|+.||.++++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3444455555554 2344443 555555555555555555555555555555555555555544 455555555555555
Q ss_pred CCCCc--ccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCC
Q 000354 589 CSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLT 666 (1622)
Q Consensus 589 ~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 666 (1622)
.|+++ .+|..|-+|..|..|||++|. ++++|.+ +..-+++-.|++++|++. ...-.-+-+|+.|-
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie-----------tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE-----------TIPNSLFINLTDLL 153 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc-----------cCCchHHHhhHhHh
Confidence 55544 455555555555555555554 5555555 555555555555555543 11112333445555
Q ss_pred EEEEeecCCCCCCcccccccccceEEEeccccCCCCCCCCcccccccCCCCcchHHHHhhccccceeeccCCCCCccccc
Q 000354 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLY 746 (1622)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 746 (1622)
.|+++.|.+..+|+.. ..+.+|+.|.|++.+ +.
T Consensus 154 fLDLS~NrLe~LPPQ~------------------------------------------RRL~~LqtL~Ls~NP-----L~ 186 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQI------------------------------------------RRLSMLQTLKLSNNP-----LN 186 (1255)
T ss_pred hhccccchhhhcCHHH------------------------------------------HHHhhhhhhhcCCCh-----hh
Confidence 5555555555444321 112223333333321 11
Q ss_pred ccCcCCcccccccccccccceeeecccccccccCcCCCcCeEeccccccccccccCCCcccccccccEEEEecCCCCCCC
Q 000354 747 ELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNI 826 (1622)
Q Consensus 747 ~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~~~~L~~L~L~~C~~L~~l 826 (1622)
.+...++|+++.|..-.+.+.... ...+ +.....+.||..++++. ++|..+
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRT--------l~N~--------------------Ptsld~l~NL~dvDlS~-N~Lp~v 237 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRT--------LDNI--------------------PTSLDDLHNLRDVDLSE-NNLPIV 237 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccch--------hhcC--------------------CCchhhhhhhhhccccc-cCCCcc
Confidence 121222333332222222211110 0001 12233455666666643 455555
Q ss_pred CChhhccCCCCccEEEeccCcccchhhccCCCCCCCCCcccccccccccEEEccCCCCccccccccCCCCCCCCCCCCCc
Q 000354 827 FSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFN 906 (1622)
Q Consensus 827 ~~~~~~~~L~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~~~~~~~~ 906 (1622)
|. .+-.+++|+.|.++++. ++++.. ......+|++|++++. .|+.++ .
T Consensus 238 Pe--cly~l~~LrrLNLS~N~-iteL~~------------~~~~W~~lEtLNlSrN-QLt~LP----------------~ 285 (1255)
T KOG0444|consen 238 PE--CLYKLRNLRRLNLSGNK-ITELNM------------TEGEWENLETLNLSRN-QLTVLP----------------D 285 (1255)
T ss_pred hH--HHhhhhhhheeccCcCc-eeeeec------------cHHHHhhhhhhccccc-hhccch----------------H
Confidence 43 23456777777776643 333321 1224566777777663 233332 2
Q ss_pred cccccccccceeccccccccccCCCCCCCCCCCccccEEEEeccCCccccCCchhhhhccCCcEEEEeccCCcceeeccc
Q 000354 907 ERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKE 986 (1622)
Q Consensus 907 ~~~~~p~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C~~L~~l~~~~ 986 (1622)
....++.|++|.+.++.+.- ...++-.+.+..|+.+...+ ++|+-+ +.++..++.|+.|.++... |..++.
T Consensus 286 avcKL~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aan-N~LElV--PEglcRC~kL~kL~L~~Nr-LiTLPe-- 356 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAAN-NKLELV--PEGLCRCVKLQKLKLDHNR-LITLPE-- 356 (1255)
T ss_pred HHhhhHHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhc-cccccC--chhhhhhHHHHHhcccccc-eeechh--
Confidence 23347788888887775321 11122223566777777665 456554 3567888999999987544 544542
Q ss_pred cCcccccccccCccCeecccCCCcccccc
Q 000354 987 RGEEATATFVFPKVTYLKLCNLSELITFY 1015 (1622)
Q Consensus 987 ~~~~~~~~~~lp~L~~L~L~~c~~L~~l~ 1015 (1622)
.+..+|-|+.|++++.|+|.--|
T Consensus 357 ------aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 357 ------AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ------hhhhcCCcceeeccCCcCccCCC
Confidence 34458899999999999987543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=5.4e-21 Score=211.65 Aligned_cols=172 Identities=26% Similarity=0.329 Sum_probs=94.7
Q ss_pred cEEEecccCCCCCCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCC
Q 000354 491 IAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1622)
Q Consensus 491 r~Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1622)
..+.++.|++..+.+++ .+..|.+|.++.|.. ..+|..+ +.+..+..|+.++|.++.+|..++.+..|+.|+.++|.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 44445555555444443 455556666665554 3344443 55555566666666666666666666666666666665
Q ss_pred CCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccccccc
Q 000354 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLN 648 (1622)
Q Consensus 570 l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 648 (1622)
+..+ ++|+.+..|..|+..+|++.++|.+++++.+|..|++.+|+ ++.+|++ ..+++.|++|+...|-+.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~-~i~m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPEN-HIAMKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHH-HHHHHHHHhcccchhhhh-------
Confidence 5555 55666666666666666666666666666666666666555 5555555 233556666655444332
Q ss_pred ccccccChhhhCCCCCCCEEEEeecCCCCC
Q 000354 649 LERNNASLQELSILSHLTTLEIHIRDAVIL 678 (1622)
Q Consensus 649 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 678 (1622)
..+.+++.|.+|..|++..|.+..+
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccccC
Confidence 3345555555555555554444433
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=3.8e-18 Score=197.06 Aligned_cols=319 Identities=21% Similarity=0.236 Sum_probs=177.6
Q ss_pred ccccEEEecccCCCCCCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCc-cCCCCCCCcEEEc
Q 000354 488 KNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCL 565 (1622)
Q Consensus 488 ~~lr~Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L 565 (1622)
.+++.+++..|....+|... ...+|..|+|.+|.+ ..+...-+.-+..||+|||+.|.|+.+|. +|..-.++++|+|
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I-~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI-SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccc-ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 44566666666666666655 344566666666554 33333334556666666666666665543 3445556666666
Q ss_pred cCCCCCCc--cccCCCCCCCEEEccCCCCcccchh-hhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccc
Q 000354 566 DQCILGDI--AIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEW 642 (1622)
Q Consensus 566 ~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 642 (1622)
++|.|+.+ ..|..|.+|-+|.|+.|.|+.||.. |.+|++|+.|+|..|. ++.+..-.+..|.+|+.|.+..|.+.
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~- 258 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDIS- 258 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcc-
Confidence 66666655 4566666666666666666666543 4446666666666655 44443333556666666666666554
Q ss_pred ccccccccccccChhhhCCCCCCCEEEEeecCCCCCCcccccccccceEEEeccccCCCCCCCCcccccccCCC--Ccch
Q 000354 643 EFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPT--NIYL 720 (1622)
Q Consensus 643 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~ 720 (1622)
...-..+-.|.++++|++..|.+..+..+ |.-....++.+.+..+. .+..
T Consensus 259 ----------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g------------------~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 259 ----------KLDDGAFYGLEKMEHLNLETNRLQAVNEG------------------WLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ----------cccCcceeeecccceeecccchhhhhhcc------------------cccccchhhhhccchhhhheeec
Confidence 12223444555556666655555544333 33333333333333321 1222
Q ss_pred HHHHhhccccceeeccCCCCCcccccccCcCCcccccccccccccceeeecccccccccCcCCCcCeEeccccccccccc
Q 000354 721 DEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKIC 800 (1622)
Q Consensus 721 ~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~ 800 (1622)
..| ...++|+.|+|++..... ++.-.+..+..|+.|.|+.|. +..+.+ ....++.+|++|++.+..---.+-
T Consensus 311 d~W-sftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 311 DSW-SFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred chh-hhcccceeEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcCCeEEEEEe
Confidence 222 345677777777654222 222222456777777777765 222211 122345667776665432111111
Q ss_pred cCCCcccccccccEEEEecCCCCCCCCChhhccCCCCccEEEeccCc
Q 000354 801 DGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCN 847 (1622)
Q Consensus 801 ~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~ 847 (1622)
++...+..++.|++|.+.+ ++++.++. ..+.+|+.||+|++.++.
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 1222344589999999988 57888865 567789999999998865
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1e-18 Score=201.90 Aligned_cols=318 Identities=22% Similarity=0.249 Sum_probs=208.2
Q ss_pred cccccEEEecccCCCCCCCCC-CCCCccEEEccCCCCC-CCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEE
Q 000354 487 LKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLC 564 (1622)
Q Consensus 487 ~~~lr~Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~-~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 564 (1622)
+.++.||++..|+...+...+ .++.||++.+..|+.- ..+|.++| .++.|.+||||+|.+...|..+..-+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 567889999999877776555 7899999999888753 56888875 69999999999999999999999999999999
Q ss_pred ccCCCCCCc--cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccc
Q 000354 565 LDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEW 642 (1622)
Q Consensus 565 L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 642 (1622)
|++|+|..| +-+-+|..|-+||||+|.+..||+.+.+|.+|++|+|++|. +..+--..+-.|++|++|.++++.-+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT- 210 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT- 210 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch-
Confidence 999999888 56889999999999999999999999999999999999986 44333222456788888888876544
Q ss_pred ccccccccccccChhhhCCCCCCCEEEEeecCCCCCCccc-ccccccceEEEeccccCCCCCCCCcccccccCCCCcchH
Q 000354 643 EFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL-FSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLD 721 (1622)
Q Consensus 643 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 721 (1622)
....+..+..|.+|+.++++.|.+..+|.-+ .+.+|+++++.+...-...
T Consensus 211 ---------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-------------------- 261 (1255)
T KOG0444|consen 211 ---------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN-------------------- 261 (1255)
T ss_pred ---------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--------------------
Confidence 1234566777888888888888887777654 5566666655433221100
Q ss_pred HHHhhccccceeeccCCCCCcccccccCcCCccccccccccccccee-eecccccccccCcCCCcCeEeccccccccccc
Q 000354 722 EIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFIL-CIVDSMAQVRCNAFPVLESMFLHNLIHLEKIC 800 (1622)
Q Consensus 722 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~-~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~ 800 (1622)
.......+|+.|.++...... +|.- ...++.|+.|.+.+|.... .|+. +.+.+-+|+.+...+ .+++-+
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt~--LP~a-vcKL~kL~kLy~n~NkL~FeGiPS-----GIGKL~~Levf~aan-N~LElV- 331 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLTV--LPDA-VCKLTKLTKLYANNNKLTFEGIPS-----GIGKLIQLEVFHAAN-NKLELV- 331 (1255)
T ss_pred ccHHHHhhhhhhccccchhcc--chHH-HhhhHHHHHHHhccCcccccCCcc-----chhhhhhhHHHHhhc-cccccC-
Confidence 001123445555555432111 1111 1345666666655554111 0111 112223333333322 112221
Q ss_pred cCCCcccccccccEEEEecCCCCCCCCChhhccCCCCccEEEeccCcccch
Q 000354 801 DGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEE 851 (1622)
Q Consensus 801 ~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~~L~~ 851 (1622)
+-+...++.|+.|.+. |+.|..+|. .+.-|+.|+.|++.+++++.-
T Consensus 332 --PEglcRC~kL~kL~L~-~NrLiTLPe--aIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 332 --PEGLCRCVKLQKLKLD-HNRLITLPE--AIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred --chhhhhhHHHHHhccc-ccceeechh--hhhhcCCcceeeccCCcCccC
Confidence 1223345666666664 345555553 355567777777777766643
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=6.6e-16 Score=152.57 Aligned_cols=167 Identities=27% Similarity=0.432 Sum_probs=135.3
Q ss_pred CCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc-cccCC
Q 000354 500 TGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1622)
Q Consensus 500 ~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~ 578 (1622)
+.++|..+.+++++.|.+++|.+ ..+|.++ ..+++|++|++++|.+..+|.+|+.++.||.|++.-|++..+ ..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 44566666777888888888876 4556664 788888888888888888888888888888888888888766 78888
Q ss_pred CCCCCEEEccCCCCc--ccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccCh
Q 000354 579 LKNLEILSLCCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASL 656 (1622)
Q Consensus 579 L~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 656 (1622)
++-|++|||.+|++. .+|..|..++.|+-|+|++|. ...+|++ +++|++||.|.+.+|.+. ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 888888888888776 788888888888888888876 7778888 888899988888887664 456
Q ss_pred hhhCCCCCCCEEEEeecCCCCCCccc
Q 000354 657 QELSILSHLTTLEIHIRDAVILPKGL 682 (1622)
Q Consensus 657 ~~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1622)
.+++.++.|+.|+|.+|....+|+++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 78888888888888888888887764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-15 Score=146.56 Aligned_cols=155 Identities=27% Similarity=0.414 Sum_probs=140.4
Q ss_pred cccccccccEEEecccCCCCCCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCc
Q 000354 483 NKDMLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLE 561 (1622)
Q Consensus 483 ~~~~~~~lr~Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 561 (1622)
+---+..+++|.++.|.+..+|+.+ ++.+|++|++++|.+ ..+|.++ +.+++||.|+++-|.+..+|..|+.++-|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 3334567899999999999999998 899999999999887 7788875 999999999999999999999999999999
Q ss_pred EEEccCCCCCC--c-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCC
Q 000354 562 SLCLDQCILGD--I-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1622)
Q Consensus 562 ~L~L~~~~l~~--l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1622)
+|||.+|++.+ + ..|..+..|+-|.|+.|.+..+|..+++|++||.|.+..|. +-.+|.+ ++.|+.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccc
Confidence 99999999854 3 56778888999999999999999999999999999999988 7889999 999999999999999
Q ss_pred ccc
Q 000354 639 SVE 641 (1622)
Q Consensus 639 ~~~ 641 (1622)
.+.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 876
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=9.3e-12 Score=162.83 Aligned_cols=129 Identities=26% Similarity=0.336 Sum_probs=103.6
Q ss_pred cCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCC--CCCc--cccCCCCCCCEEEccCC-CCcccchhhhcCCCCC
Q 000354 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI--LGDI--AIIGNLKNLEILSLCCS-DIEQLPREIGELTQLK 606 (1622)
Q Consensus 532 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~ 606 (1622)
.+....|.+.+.+|.+..++.+..+- .|++|-+.++. +..+ ..|..++.|++|||++| .+..||.+|++|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34567788888888888777665443 79999888885 5555 34888999999999976 6889999999999999
Q ss_pred EEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecC
Q 000354 607 LLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1622)
Q Consensus 607 ~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 674 (1622)
+|+++++. +..+|.+ +++|.+|.+|++..+... ......+..|++|++|.+....
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 99999987 9999999 999999999999876543 1224556669999999987654
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=1.1e-10 Score=149.32 Aligned_cols=155 Identities=23% Similarity=0.289 Sum_probs=100.5
Q ss_pred cEEEecccCCCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCC
Q 000354 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCIL 570 (1622)
Q Consensus 491 r~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 570 (1622)
..|.++.+.+..+|..+. .+|+.|.+..|.+ ..+|. .+++|++|++++|.++.+|.. ..+|+.|+|++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 456777777777777552 4677777777765 34554 246778888888877777653 35677788888777
Q ss_pred CCccccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccc
Q 000354 571 GDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650 (1622)
Q Consensus 571 ~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (1622)
..++. .+.+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. . .+|+.|++++|.+.. ++
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~-LP----- 338 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS-LP----- 338 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc-cc-----
Confidence 66643 235677788888877777753 4677888887775 6666652 2 346667777766541 10
Q ss_pred ccccChhhhCCCCCCCEEEEeecCCCCCC
Q 000354 651 RNNASLQELSILSHLTTLEIHIRDAVILP 679 (1622)
Q Consensus 651 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1622)
. -..+|+.|++++|.+..+|
T Consensus 339 -------~--lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 339 -------T--LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred -------c--cccccceEecCCCccCCCC
Confidence 1 1136777777777666554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=6.8e-11 Score=152.60 Aligned_cols=138 Identities=17% Similarity=0.355 Sum_probs=97.4
Q ss_pred cccEEEecccCCCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCC
Q 000354 489 NCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1622)
Q Consensus 489 ~lr~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1622)
+...|.+.++.+..+|..+ .++|+.|++++|.+ ..+|..++ .+|++|++++|.+..+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 4567888887888887655 35788888888866 46776653 478888888888888877554 36888888888
Q ss_pred CCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000354 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 569 ~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1622)
.+..+ ..+. .+|++|++++|.+..+|..+. .+|++|++++|+ +..+|.. +. .+|++|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 77766 3332 468888888888877776654 478888888775 6777754 32 35677777776654
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=1.5e-09 Score=149.70 Aligned_cols=292 Identities=16% Similarity=0.192 Sum_probs=178.3
Q ss_pred cccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCC
Q 000354 139 EFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGL 217 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~ 217 (1622)
..++-|....+.+-+ ....+++.|+|++|.||||++.++... ++.++|+++... .+.......++..++.
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 456677765554432 246789999999999999999998842 226899999754 4556666666666632
Q ss_pred CCCC--------------CChHHHHHHHHHHHHh-cCcEEEEEcCCCChh--hhh-hccCCCCCCCCCcEEEEEcCcchh
Q 000354 218 NFCE--------------ESDSERIMMLCNRLKR-EKKILVILDDIWTSL--DLE-RTGIPFGDVHRGCKILVTSRRRDV 279 (1622)
Q Consensus 218 ~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--~~~-~l~~~l~~~~~gskIlvTTR~~~v 279 (1622)
.... ......+..+...+.. +.+++|||||+...+ ... .+..-+.....+.++|||||...-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 1111 1112233444455544 688999999986642 111 221112223356789899998431
Q ss_pred hhh-cC-cccceEEec----cCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchhHHHH
Q 000354 280 LVS-EM-HCQNNYCVS----VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKA 353 (1622)
Q Consensus 280 ~~~-~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~w~~~ 353 (1622)
... .. ......++. +|+.+|+.++|....|.... .+...+|.+.++|.|+++..++..++..... ....
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~ 239 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDS 239 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhh
Confidence 110 01 112345555 89999999999887764322 3456789999999999999998877544321 0111
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhcCCchhHHHHHHhhcccCCCCCccHHHHHHHhhcccccccchhHHHHHHHHHH
Q 000354 354 LQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYA 433 (1622)
Q Consensus 354 l~~l~~~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~ 433 (1622)
...+. .. ....+......-.|+.||++ .+.++...|+++. +. ..+...-.+. .+ ..+
T Consensus 240 ~~~~~----~~-~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~-~~l~~~l~~~---------~~----~~~ 296 (903)
T PRK04841 240 ARRLA----GI-NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS---MN-DALIVRVTGE---------EN----GQM 296 (903)
T ss_pred hHhhc----CC-CchhHHHHHHHHHHhcCCHH-HHHHHHHhccccc---CC-HHHHHHHcCC---------Cc----HHH
Confidence 11111 00 01122312334457899998 8999999999975 33 2222211110 01 123
Q ss_pred HHHHHhhcccccC-CC-CCCeEEechhHHHHHHHHH
Q 000354 434 LVRGLKDTCLLHD-DD-TADWFSMLGFVRNVAISIA 467 (1622)
Q Consensus 434 ~l~~L~~~sll~~-~~-~~~~~~mHdlv~d~a~~~~ 467 (1622)
.+++|.+.+++.. .+ +...|+.|++++++++...
T Consensus 297 ~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 5888999998653 33 3457999999999998864
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=7.1e-12 Score=140.32 Aligned_cols=139 Identities=24% Similarity=0.377 Sum_probs=116.0
Q ss_pred cCCCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCccc-CccCCCCCCCcEEEccC-CCCCCc--
Q 000354 498 INTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQ-CILGDI-- 573 (1622)
Q Consensus 498 ~~~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~-~~l~~l-- 573 (1622)
....++|..+ .+....+.|..|.+ ..+|+..|+.+++||.|||++|.|+.+ |..|..|..|-.|-+-+ |+|+++
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3466777765 33556678888877 678988999999999999999999976 78899999888877766 899988
Q ss_pred cccCCCCCCCEEEccCCCCcccc-hhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCc
Q 000354 574 AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1622)
Q Consensus 574 ~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1622)
..|++|..|+-|.+.-|.+..++ ..+..|++|..|.+.+|. +..++.+.+..+..++++.+..|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 68999999999999988888654 458999999999999887 888999889999999999887665
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=1.3e-09 Score=139.73 Aligned_cols=239 Identities=19% Similarity=0.140 Sum_probs=131.8
Q ss_pred ccccccEEEecccCCCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEc
Q 000354 486 MLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1622)
Q Consensus 486 ~~~~lr~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 565 (1622)
+..+++.|++.+|.+..+|.. +++|++|++++|.+. .+|.. .++|+.|++++|.+..+|..+ .+|+.|++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccCc----ccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 445788888888888888764 578888888888663 55542 357778888888877776532 45777777
Q ss_pred cCCCCCCccccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccc
Q 000354 566 DQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1622)
Q Consensus 566 ~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 645 (1622)
++|.++.++. .+++|++|+|++|.++.+|... .+|+.|++++|. +..+|.- ..+|++|++++|.+.. ++
T Consensus 290 s~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS~N~Ls~-LP 358 (788)
T PRK15387 290 FGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQELSVSDNQLAS-LP 358 (788)
T ss_pred cCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccceEecCCCccCC-CC
Confidence 7777776643 2467777777777777766532 345566666655 5556541 1456667776666541 11
Q ss_pred cccccccccChhhhCCCCCCCEEEEeecCCCCCCcccccccccceEEEeccccCCCCCCCCcccccccCCCCcchHHHHh
Q 000354 646 GLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIM 725 (1622)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 725 (1622)
. ...+|+.|+++.|.+..+|.. ..+|+.+.+.....-........+..+.+..+.-...+ .
T Consensus 359 -----------~---lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP---~ 419 (788)
T PRK15387 359 -----------T---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP---M 419 (788)
T ss_pred -----------C---CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC---c
Confidence 0 012333344444443333321 12233333322211111111112223333222211111 1
Q ss_pred hccccceeeccCCCCCcccccccCcCCcccccccccccccce
Q 000354 726 NLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFI 767 (1622)
Q Consensus 726 ~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l 767 (1622)
.+.+|+.|++.++.. ..+...+ ..+++|+.|+|++|+..
T Consensus 420 l~~~L~~L~Ls~NqL-t~LP~sl--~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 420 LPSGLLSLSVYRNQL-TRLPESL--IHLSSETTVNLEGNPLS 458 (788)
T ss_pred chhhhhhhhhccCcc-cccChHH--hhccCCCeEECCCCCCC
Confidence 234567788876543 2322222 46789999999998743
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=5.6e-12 Score=142.55 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred CCccccEEEEeccCCccccCCchhhhhccCCcEEEEeccCCcceeeccccCcccccccccCccCeecccCCCccccccCC
Q 000354 938 GIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPG 1017 (1622)
Q Consensus 938 ~l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~l~~~ 1017 (1622)
.+|++++|.|.+|.++++-.-.+....++.|+.|++..|.+++...-.. ....+++|++|.++.|+.++.-...
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------LAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------HHHhhhhHHHhhhccCchhhcCcch
Confidence 4566666666666666655444455666666666666666666543210 1112666666666666665552211
Q ss_pred cccccCCCcceEEEecCCcc
Q 000354 1018 IHTLEWPLLKRLEVYGCNKV 1037 (1622)
Q Consensus 1018 ~~~~~~~sL~~L~I~~C~~L 1037 (1622)
.....+..|+++...||..+
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred HHhccchhhhhhhhcccccc
Confidence 12223334444444455443
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=6.5e-10 Score=143.60 Aligned_cols=177 Identities=20% Similarity=0.325 Sum_probs=136.3
Q ss_pred ccccccEEEecccCCCCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEc
Q 000354 486 MLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1622)
Q Consensus 486 ~~~~lr~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 565 (1622)
+.+.++.|.+.+|.+..+|..+ +.+|++|++++|.+ ..+|..+. ..|+.|+|++|.+..+|..+. .+|++|+|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L-tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL-TSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc-ccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 4567999999999999998766 46999999999886 46787653 479999999999999988775 48999999
Q ss_pred cCCCCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccc
Q 000354 566 DQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEF 644 (1622)
Q Consensus 566 ~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 644 (1622)
++|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|.+..
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-- 339 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTS-- 339 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCcccc--
Confidence 99999877 3343 589999999999999987654 478899999887 7788865 3 3688999998887651
Q ss_pred ccccccccccChhhhCCCCCCCEEEEeecCCCCCCcccccccccceEE
Q 000354 645 EGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKI 692 (1622)
Q Consensus 645 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 692 (1622)
.+..+ .++|+.|++++|.+..+|..+ ...|+.|.+
T Consensus 340 ----------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdL 374 (754)
T PRK15370 340 ----------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDV 374 (754)
T ss_pred ----------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEEC
Confidence 11222 257899999988887776543 244555544
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=4e-08 Score=114.78 Aligned_cols=182 Identities=17% Similarity=0.174 Sum_probs=117.9
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHH---
Q 000354 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCN--- 233 (1622)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~--- 233 (1622)
.....++.|+|++|+||||+++.+++...... + .++|+ +....+..+++..|+..++..............+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 33456899999999999999999998875321 1 12233 334457788999999998876544443333333333
Q ss_pred -HHHhcCcEEEEEcCCCChh--hhhhccCCC---CCCCCCcEEEEEcCcchhhhh---------cCcccceEEeccCCHH
Q 000354 234 -RLKREKKILVILDDIWTSL--DLERTGIPF---GDVHRGCKILVTSRRRDVLVS---------EMHCQNNYCVSVLNKE 298 (1622)
Q Consensus 234 -~l~~~kr~LlVlDdv~~~~--~~~~l~~~l---~~~~~gskIlvTTR~~~v~~~---------~~~~~~~~~l~~L~~~ 298 (1622)
....+++.+||+||++... .++.+.... ........|++|.... .... .......+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2335788999999998863 344433211 1122233455665432 1110 0112346789999999
Q ss_pred HHHHHHHHHhC---CCCCCchhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000354 299 EAWSLFSKVVG---NCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1622)
Q Consensus 299 ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L 342 (1622)
|..+++...+. ......-..+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987763 211222335788999999999999999998776
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.98 E-value=7.5e-08 Score=119.11 Aligned_cols=288 Identities=22% Similarity=0.185 Sum_probs=166.2
Q ss_pred ccccccHHHHHHHHHHHHc----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 138 HEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
+..+.||++++++|...+. ......+.|+|++|+|||++++.++++.......-.+++|++....+...++..|..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568899999999998874 234456889999999999999999998764332334667777777788899999999
Q ss_pred HhCCC-CC--CCChHHHHHHHHHHHHh-cCcEEEEEcCCCChh------hhhhccCCCCCCCCCcE--EEEEcCcchhhh
Q 000354 214 QLGLN-FC--EESDSERIMMLCNRLKR-EKKILVILDDIWTSL------DLERTGIPFGDVHRGCK--ILVTSRRRDVLV 281 (1622)
Q Consensus 214 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gsk--IlvTTR~~~v~~ 281 (1622)
++... .+ ..+..+....+.+.+.. ++..+||+|+++... .+..+..... ...+++ ||.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 98652 21 22334455566666654 456899999998753 2223322111 122333 566666554332
Q ss_pred h---c---CcccceEEeccCCHHHHHHHHHHHhCC-----CCCCchhHHHHHHHHHHhCCChHHHHHHHHHh--c---CC
Q 000354 282 S---E---MHCQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDPDLQTVAIQVANECGGLPIAILTVARTL--R---NK 345 (1622)
Q Consensus 282 ~---~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L--~---~~ 345 (1622)
. . .-....+.+.+++.++..+++..++.. ...+..++.+++......|..+.|+.++-... . +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 0 011246899999999999999988732 11222223333333333455777777764432 1 11
Q ss_pred Cchh---HHHHHHHHHhhccCCCChHHHHHHHHHHHhhcCCchhHHHHHHhhc-ccCCC-CCccHHHHHHH----hhccc
Q 000354 346 PLFV---WKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCS-LMKHP-CDAPIMDLLKY----GTGLG 416 (1622)
Q Consensus 346 ~~~~---w~~~l~~l~~~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~a-~fp~~-~~~~i~~li~~----w~~~g 416 (1622)
.... .+.+++... .....-.+..||.++ |..+..++ ....+ ......++... .-..|
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~-k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHE-KLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHH-HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 2112 444444332 134455678999973 44333333 22210 12333333221 11122
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhcccccC
Q 000354 417 LFEDIYTMQERRDRVYALVRGLKDTCLLHD 446 (1622)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~L~~~sll~~ 446 (1622)
.-.- ....+.++++.|.+.++|..
T Consensus 334 ~~~~------~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 YEPR------THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCcC------cHHHHHHHHHHHHhcCCeEE
Confidence 2110 12345667999999999874
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.97 E-value=4.6e-08 Score=121.30 Aligned_cols=289 Identities=22% Similarity=0.223 Sum_probs=185.0
Q ss_pred ccccccHHHHHHHHHHHHcC-CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHh
Q 000354 138 HEFIESRESILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQL 215 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l 215 (1622)
+...+-|.. |++.|.+ .+.|.+.|..++|.|||||+.+.+..... =..+.|.++.+.. ++.+..+.++..+
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHH
Confidence 334555665 4444543 47899999999999999999999874432 2568999997654 5777777777777
Q ss_pred CCCCCCCCh--------------HHHHHHHHHHHHh-cCcEEEEEcCCC---Chh---hhhhccCCCCCCCCCcEEEEEc
Q 000354 216 GLNFCEESD--------------SERIMMLCNRLKR-EKKILVILDDIW---TSL---DLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 216 ~~~~~~~~~--------------~~~~~~l~~~l~~-~kr~LlVlDdv~---~~~---~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+.-.+...+ ...+..+...+.. .++..+||||-- +.. ..+-+... ...+-..||||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEe
Confidence 643333222 2233344444433 478899999953 321 23333333 33677899999
Q ss_pred Ccchhhhh-cCc-ccceEEec----cCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCch
Q 000354 275 RRRDVLVS-EMH-CQNNYCVS----VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLF 348 (1622)
Q Consensus 275 R~~~v~~~-~~~-~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~ 348 (1622)
|...-..- .+. .+..+++. .++.+|+-++|....+..-+ +.-.+.+.+...|.+-|+..++=.+++....
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 98853321 011 12234444 38899999999887644332 2346789999999999999999888744332
Q ss_pred hHHHHHHHHHhhccCCCChHH-HHHHHHHHHhhcCCchhHHHHHHhhcccCCCCCccHHHHHHHhhcccccccchhHHHH
Q 000354 349 VWKKALQELRFSARNFTGLEA-LLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQER 427 (1622)
Q Consensus 349 ~w~~~l~~l~~~~~~~~~~~~-i~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~ 427 (1622)
+ ..+..+ .+... +-.....--++.||++ ++.+++-||+++.- . .+|+..-.+.+
T Consensus 244 ~--q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f---~-~eL~~~Ltg~~----------- 298 (894)
T COG2909 244 E--QSLRGL-------SGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF---N-DELCNALTGEE----------- 298 (894)
T ss_pred H--HHhhhc-------cchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh---h-HHHHHHHhcCC-----------
Confidence 2 111111 11111 2224455567899998 89999999999871 1 33433222221
Q ss_pred HHHHHHHHHHHhhcccccC--CCCCCeEEechhHHHHHHHHH
Q 000354 428 RDRVYALVRGLKDTCLLHD--DDTADWFSMLGFVRNVAISIA 467 (1622)
Q Consensus 428 ~~~~~~~l~~L~~~sll~~--~~~~~~~~mHdlv~d~a~~~~ 467 (1622)
.+..++++|.+++|+.. ++....|+.|.+..||.+.--
T Consensus 299 --ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 299 --NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred --cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 22346899999999863 356678999999999987753
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=2.3e-11 Score=137.69 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=126.5
Q ss_pred ccccccEEEEecCCCCCCCCChhhccCCCCccEEEeccCcccchhhccCCCCCCCCCcccccccccccEEEccCCCCccc
Q 000354 808 FFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTS 887 (1622)
Q Consensus 808 ~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~ 887 (1622)
..|++++|.+.+|.++++-........++.|+.|.+..|..++........ ..+++|++|++++||.+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----------~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----------EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----------HhhhhHHHhhhccCchhhc
Confidence 467777777788877776655555667788888888888877766543221 2578888888888887655
Q ss_pred cccccCCCCCCCCCCCCCccccccccccceeccccccccccCCCCCCCCCCCccccEEEEeccCCccccCCchhhhhccC
Q 000354 888 FYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQ 967 (1622)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~s 967 (1622)
= .+..-......++++...+|...+. .........++-+.++++.+|..+++.....+...+..
T Consensus 232 ~--------------gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 232 N--------------GVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred C--------------cchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 0 0000111234466666666642211 00111112345566777778888877643445566778
Q ss_pred CcEEEEeccCCcceeeccccCcccccccccCccCeecccCCCccccccCCcccccCCCcceEEEecCCcce
Q 000354 968 LQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVK 1038 (1622)
Q Consensus 968 L~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~l~~~~~~~~~~sL~~L~I~~C~~L~ 1038 (1622)
|+.|..++|.++...+. |......++|+.|.+..|..++.........+|+.|+.|++.+|....
T Consensus 296 lq~l~~s~~t~~~d~~l------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVL------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred hhhhcccCCCCCchHHH------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 88888888887654432 122334688888888888888877766667778888888888876543
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=1.2e-10 Score=130.69 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=116.4
Q ss_pred ccccCCcccccccccEEEecccCCCCCCCCC--CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecC-CcCcccCcc
Q 000354 477 ALIEWPNKDMLKNCIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTR-MKLLTLPSS 553 (1622)
Q Consensus 477 ~~~~~~~~~~~~~lr~Lsl~~~~~~~lp~~~--~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~-~~i~~lp~~ 553 (1622)
+..++| .+.+.....|.+..|.|..+|+.. .+++||.|+|+.|.+...-| +.|.+++.|..|-+.+ |.|+.+|..
T Consensus 57 GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 444444 345667788888888888888775 78888888888887744333 4467777766665555 777766643
Q ss_pred -CCCCC------------------------CCcEEEccCCCCCCc--cccCCCCCCCEEEccCCCCc---ccc-------
Q 000354 554 -FCHLP------------------------NLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIE---QLP------- 596 (1622)
Q Consensus 554 -i~~L~------------------------~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~---~LP------- 596 (1622)
|..|. +|+.|.|.+|.+..+ ..+..+..++++.+..|.+- .+|
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 44444 444445555444433 23444444444444332200 000
Q ss_pred -----------------------------------------------------hhhhcCCCCCEEEccCCCCCCccCccc
Q 000354 597 -----------------------------------------------------REIGELTQLKLLDLSNCSKLKVIPPNV 623 (1622)
Q Consensus 597 -----------------------------------------------------~~i~~L~~L~~L~L~~~~~l~~lp~~~ 623 (1622)
..|.+|++|+.|+|++|. ++.+.++.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhhhh
Confidence 124556666666666655 66666666
Q ss_pred cCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCCCCCCccc
Q 000354 624 ISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL 682 (1622)
Q Consensus 624 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1622)
+..+..+++|++..|.+. ...-..+.++..|+.|++.+|.++.+..++
T Consensus 294 Fe~~a~l~eL~L~~N~l~-----------~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLE-----------FVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred hcchhhhhhhhcCcchHH-----------HHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 666666666666666554 233456777888888888888887766554
No 31
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=6.7e-09 Score=111.52 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=93.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCC----cceEEEEEecCCcCHH---HHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLK---RIRREIADQLGLNFCEESDSERIMMLCN 233 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (1622)
|++.|+|.+|+||||+++.++.+...... +..++|++.++..... .+...|.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 58999999999999999999998875443 3466777776554432 3444444443322111 1112333
Q ss_pred HHHhcCcEEEEEcCCCChhh---------hhhccCCC-CC-CCCCcEEEEEcCcchh--hhhcCcccceEEeccCCHHHH
Q 000354 234 RLKREKKILVILDDIWTSLD---------LERTGIPF-GD-VHRGCKILVTSRRRDV--LVSEMHCQNNYCVSVLNKEEA 300 (1622)
Q Consensus 234 ~l~~~kr~LlVlDdv~~~~~---------~~~l~~~l-~~-~~~gskIlvTTR~~~v--~~~~~~~~~~~~l~~L~~~ea 300 (1622)
.+.+.++++||+|++++... +..+...+ .. ..++.+||||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 44457999999999987632 12222111 11 2468999999998876 222344456899999999999
Q ss_pred HHHHHHHh
Q 000354 301 WSLFSKVV 308 (1622)
Q Consensus 301 ~~Lf~~~~ 308 (1622)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99999876
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.90 E-value=5.3e-09 Score=119.36 Aligned_cols=193 Identities=20% Similarity=0.243 Sum_probs=104.8
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH---------
Q 000354 141 IESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI--------- 211 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i--------- 211 (1622)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..... .+ .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 68999999999999987667889999999999999999999987422 12 344554433332221 1121
Q ss_pred -HHHhCCCCC-----------CCChHHHHHHHHHHHHh-cCcEEEEEcCCCChh-hh---hh-------ccCCCCCCCCC
Q 000354 212 -ADQLGLNFC-----------EESDSERIMMLCNRLKR-EKKILVILDDIWTSL-DL---ER-------TGIPFGDVHRG 267 (1622)
Q Consensus 212 -~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~---~~-------l~~~l~~~~~g 267 (1622)
...+....+ ..........+.+.+.+ +++.+||+||+.... .. .. +........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211110 11223445556666654 466999999987665 11 11 11111222333
Q ss_pred cEEEEEcCcchhhhh-------cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 268 CKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 268 skIlvTTR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
+.|+++|. ..+... ..+....+.+++|+.+++++++...+.....-+.-++..++|...+||+|..|..
T Consensus 158 ~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44444444 333221 1233445999999999999999997744311112345578999999999988764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=1.4e-10 Score=135.65 Aligned_cols=175 Identities=26% Similarity=0.379 Sum_probs=154.6
Q ss_pred ccEEEecccCCCCCCCCC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCC
Q 000354 490 CIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1622)
Q Consensus 490 lr~Lsl~~~~~~~lp~~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1622)
....+++.|.+.++|..+ .|-.|..+.+..|.+ ..+|..+ .++..|.+|+|+.|.++.+|..++.|+ |++|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 456678888899999887 678888888888876 5667664 899999999999999999999999886 999999999
Q ss_pred CCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccc
Q 000354 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL 647 (1622)
Q Consensus 569 ~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 647 (1622)
+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|++..|+ +..+|++ +..| .|..||++.|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------ 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------ 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee------
Confidence 99988 88999999999999999999999999999999999999988 8889998 6654 5899999999886
Q ss_pred cccccccChhhhCCCCCCCEEEEeecCCCCCCccc
Q 000354 648 NLERNNASLQELSILSHLTTLEIHIRDAVILPKGL 682 (1622)
Q Consensus 648 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1622)
..+..+.+|++|++|.+.+|.+..-|..+
T Consensus 225 ------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 56778999999999999999998877765
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=8.5e-07 Score=108.57 Aligned_cols=290 Identities=18% Similarity=0.184 Sum_probs=163.2
Q ss_pred ccccccHHHHHHHHHHHHc----CCCeEEEEEEeCCCccHHHHHHHHHHHhhcc-CCc---ceEEEEEecCCcCHHHHHH
Q 000354 138 HEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIF---DEVVFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~ 209 (1622)
+..++||++++++|..+|. ......+.|+|++|+|||++++.+++..... ... -.++||++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468999999999999986 2344679999999999999999999876421 111 1466888877778888999
Q ss_pred HHHHHh---CCCCCC--CChHHHHHHHHHHHHh-cCcEEEEEcCCCChh-h----hhhccCCC-CCCC--CCcEEEEEcC
Q 000354 210 EIADQL---GLNFCE--ESDSERIMMLCNRLKR-EKKILVILDDIWTSL-D----LERTGIPF-GDVH--RGCKILVTSR 275 (1622)
Q Consensus 210 ~i~~~l---~~~~~~--~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gskIlvTTR 275 (1622)
.|+.++ +...+. .+..+....+.+.+.. +++++||||+++... . +..+.... .... ....+|++|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999988 333222 2333445556666643 567899999998762 1 22222110 1111 2334555554
Q ss_pred cchhhhh---cC--c-ccceEEeccCCHHHHHHHHHHHhCC----CCCCchhHHHHHHHHHHhCCChHHH-HHHHHHh--
Q 000354 276 RRDVLVS---EM--H-CQNNYCVSVLNKEEAWSLFSKVVGN----CVEDPDLQTVAIQVANECGGLPIAI-LTVARTL-- 342 (1622)
Q Consensus 276 ~~~v~~~---~~--~-~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~glPLai-~~ig~~L-- 342 (1622)
....... .. . ....+.+.+++.+|..+++..++.. ..-+++..+...+++....|.+-.+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4432211 00 1 1246899999999999999988731 1122232334455666777887443 3322211
Q ss_pred --c-CCCchh---HHHHHHHHHhhccCCCChHHHHHHHHHHHhhcCCchhHHHHHHhhccc-C-CCCCccHHHHHHHh--
Q 000354 343 --R-NKPLFV---WKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLM-K-HPCDAPIMDLLKYG-- 412 (1622)
Q Consensus 343 --~-~~~~~~---w~~~l~~l~~~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~a~f-p-~~~~~~i~~li~~w-- 412 (1622)
. +..... .+.+.+.+. .....-....||.+ .+..+..++.. . +...+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 111122 333333322 13445566788887 34444433321 1 21123334444422
Q ss_pred --hcccccccchhHHHHHHHHHHHHHHHhhcccccCC
Q 000354 413 --TGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDD 447 (1622)
Q Consensus 413 --~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 447 (1622)
-..|.-+ . ...++.++++.|...+++...
T Consensus 320 ~~~~~~~~~--~----~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDP--L----TQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCC--C----cHHHHHHHHHHHHhcCCeEEE
Confidence 1112111 1 124566778999999998753
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=6.4e-10 Score=119.91 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=119.0
Q ss_pred cCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEcc
Q 000354 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1622)
Q Consensus 532 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~ 611 (1622)
...+.|..|||++|.|+.+-.++.-++.+|+|++++|.+..+..+..|++|+.||||+|.+.++-.+=.+|-|.++|.|+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34578999999999999999999999999999999999999988999999999999999999888777889999999999
Q ss_pred CCCCCCccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCCCCCCc
Q 000354 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPK 680 (1622)
Q Consensus 612 ~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 680 (1622)
+|. +..+.. +++|-+|..|++.+|.+. +-.....+++|++|+.|.+.+|.+..++.
T Consensus 361 ~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 987 777765 899999999999999886 12345788999999999999888766553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=5.2e-09 Score=110.65 Aligned_cols=130 Identities=26% Similarity=0.276 Sum_probs=52.7
Q ss_pred cCCCCccEEEecCCcCcccCccCC-CCCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchhh-hcCCCCCEEE
Q 000354 532 AGMPKLRVLVLTRMKLLTLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLD 609 (1622)
Q Consensus 532 ~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i-~~L~~L~~L~ 609 (1622)
.+..++|.|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.++.+..|.+|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45567888888888888764 455 57888999999998888888888999999999999998887665 3688999999
Q ss_pred ccCCCCCCccCc-cccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEe
Q 000354 610 LSNCSKLKVIPP-NVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1622)
Q Consensus 610 L~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 671 (1622)
+++|. +..+.. ..+..+++|++|++.+|.+.. ........+..+++|+.|+-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~--------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE--------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG--------STTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccc--------hhhHHHHHHHHcChhheeCCE
Confidence 98876 555432 226778889999998887751 123345567778888888754
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=8.5e-09 Score=123.86 Aligned_cols=177 Identities=24% Similarity=0.245 Sum_probs=94.0
Q ss_pred ccEEEecccCCCC-----CCCCC-CCCCccEEEccCCCCCC--C---CChhhhcCCCCccEEEecCCcCc-ccCccCCCC
Q 000354 490 CIAIFLHDINTGE-----LPEGL-EYPHLTSLCMNPKDPFL--H---IPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHL 557 (1622)
Q Consensus 490 lr~Lsl~~~~~~~-----lp~~~-~~~~Lr~L~L~~n~~~~--~---lp~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L 557 (1622)
++.+.+.++.+.. ++..+ ..++|+.|+++++.... . .....|.++++|+.|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 5566666655422 22222 44556677766655431 0 00123456667777777777665 233333333
Q ss_pred ---CCCcEEEccCCCCCC-----c-cccCCC-CCCCEEEccCCCCc-----ccchhhhcCCCCCEEEccCCCCCC-----
Q 000354 558 ---PNLESLCLDQCILGD-----I-AIIGNL-KNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLK----- 617 (1622)
Q Consensus 558 ---~~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~L~~~~~l~----- 617 (1622)
++|++|++++|.+.. + ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. +.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 183 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIR 183 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHH
Confidence 337777777776652 1 344555 67777777777665 334445566667777777665 33
Q ss_pred ccCccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCC
Q 000354 618 VIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1622)
Q Consensus 618 ~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1622)
.++.. +..+++|++|++++|.+... ........+..+++|+.|+++++..
T Consensus 184 ~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 184 ALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcC
Confidence 12222 34455677777766655410 0011223445566677776665543
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.3e-09 Score=127.62 Aligned_cols=172 Identities=24% Similarity=0.392 Sum_probs=135.8
Q ss_pred EEecccCCCCCCCCC---CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCC
Q 000354 493 IFLHDINTGELPEGL---EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1622)
Q Consensus 493 Lsl~~~~~~~lp~~~---~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1622)
+.|++-...++|... ++..-...+++.|.+ ..+|..+ ..|..|..|.|..|.+..+|..+++|..|.+|+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc-ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 444444455555432 445556678888876 5677764 77888999999999999999999999999999999999
Q ss_pred CCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccccccc
Q 000354 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLN 648 (1622)
Q Consensus 570 l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 648 (1622)
+..+ ..++.|+ |++|-+++|+++.+|..|+-+..|.+||.+.|. +..+|.. ++.|.+|+.|.+..|.+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------- 202 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence 9887 5666554 899999999999999999988999999999887 8889988 899999999998888775
Q ss_pred ccccccChhhhCCCCCCCEEEEeecCCCCCCccc
Q 000354 649 LERNNASLQELSILSHLTTLEIHIRDAVILPKGL 682 (1622)
Q Consensus 649 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1622)
..+.++..|+ |..|++++|.+..+|-.+
T Consensus 203 -----~lp~El~~Lp-Li~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 203 -----DLPEELCSLP-LIRLDFSCNKISYLPVDF 230 (722)
T ss_pred -----hCCHHHhCCc-eeeeecccCceeecchhh
Confidence 4556777554 888999998888777543
No 39
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.65 E-value=1.1e-06 Score=104.75 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=110.4
Q ss_pred ccccccHHHHHHHHHHHHc-----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 138 HEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
...|+|++..+++|..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHH
Confidence 3568999999999988876 2345568899999999999999999887532 2 122222111222222 222
Q ss_pred HHhCCCC----C--CCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhhc-Cc
Q 000354 213 DQLGLNF----C--EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSE-MH 285 (1622)
Q Consensus 213 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~-~~ 285 (1622)
..++... + +.-.....+.+...+ ++.+..+|+|+..+...|.. +++ +.+-|..||+...+.... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 2222110 0 000111122222222 34556667776655544432 122 245566677765443320 11
Q ss_pred ccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 000354 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1622)
Q Consensus 286 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~ 340 (1622)
....+++++++.+|..+++.+.++.... .-..+....|++.|+|.|-.+..++.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 2346899999999999999998853221 22245678999999999976655554
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=2.6e-08 Score=119.68 Aligned_cols=178 Identities=25% Similarity=0.258 Sum_probs=122.5
Q ss_pred cccEEEecccCCCCCCC-------CC-CCCCccEEEccCCCCCCCCChhhhcCCC---CccEEEecCCcCc-----ccCc
Q 000354 489 NCIAIFLHDINTGELPE-------GL-EYPHLTSLCMNPKDPFLHIPDNFFAGMP---KLRVLVLTRMKLL-----TLPS 552 (1622)
Q Consensus 489 ~lr~Lsl~~~~~~~lp~-------~~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~---~Lr~L~Ls~~~i~-----~lp~ 552 (1622)
+++++.+..+.+...+. .+ .+++|+.|++++|.+....+.. |..+. +|++|++++|.+. .+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 46777777766553222 12 5779999999998875444332 34444 4999999999886 2345
Q ss_pred cCCCC-CCCcEEEccCCCCCC-----c-cccCCCCCCCEEEccCCCCc-----ccchhhhcCCCCCEEEccCCCCCCc--
Q 000354 553 SFCHL-PNLESLCLDQCILGD-----I-AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLKV-- 618 (1622)
Q Consensus 553 ~i~~L-~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~L~~~~~l~~-- 618 (1622)
.+..+ ++|+.|++++|.++. + ..+..+.+|++|++++|.+. .++..+..+++|++|++++|. +..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHH
Confidence 56677 899999999998872 2 45778889999999999887 345566777899999999986 442
Q ss_pred ---cCccccCCCCCCCEEEccCCccccccccccccccccChhhh-CCCCCCCEEEEeecCCC
Q 000354 619 ---IPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQEL-SILSHLTTLEIHIRDAV 676 (1622)
Q Consensus 619 ---lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~L~l~~~~~~ 676 (1622)
+... +..+++|++|++++|.+..... ......+ .....|+.|++.++.+.
T Consensus 210 ~~~l~~~-~~~~~~L~~L~ls~n~l~~~~~-------~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 210 ASALAET-LASLKSLEVLNLGDNNLTDAGA-------AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHH-hcccCCCCEEecCCCcCchHHH-------HHHHHHHhccCCCceEEEccCCCCC
Confidence 2222 6678899999999987751000 0001111 13478899998877653
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=1.9e-08 Score=106.51 Aligned_cols=120 Identities=28% Similarity=0.405 Sum_probs=45.5
Q ss_pred CCcCcccCccCCCCCCCcEEEccCCCCCCccccC-CCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCcc
Q 000354 544 RMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIG-NLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPN 622 (1622)
Q Consensus 544 ~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~ 622 (1622)
.+.|...|. +.+...+|.|+|++|.|..++.++ .|.+|+.|+|++|.|+.++ .+..|++|++|++++|. ++.+..+
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred ccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 344444444 456668999999999999998888 6899999999999999986 68899999999999988 8888765
Q ss_pred ccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCCC
Q 000354 623 VISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1622)
Q Consensus 623 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1622)
....+++|++|++++|.+. .-..+..++.+++|+.|++.+|...
T Consensus 83 l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCccc
Confidence 2346999999999999886 1234678888999999999988765
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.58 E-value=7.4e-06 Score=102.65 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=121.1
Q ss_pred ccccccHHHHHHHHHHHHc-----CCCeEEEEEEeCCCccHHHHHHHHHHHhhc---cCCcc--eEEEEEecCCcCHHHH
Q 000354 138 HEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKE---GRIFD--EVVFAEVSQTPDLKRI 207 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~i 207 (1622)
+..+.||++++++|...|. .....++.|+|++|+|||++++.|.+.... ..... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3567799999999998886 223357889999999999999999987642 11222 3667877777788889
Q ss_pred HHHHHHHhCCCCCCC--ChHHHHHHHHHHHHh--cCcEEEEEcCCCChh--hhhhccCCCC-CCCCCcEEEE--EcCcch
Q 000354 208 RREIADQLGLNFCEE--SDSERIMMLCNRLKR--EKKILVILDDIWTSL--DLERTGIPFG-DVHRGCKILV--TSRRRD 278 (1622)
Q Consensus 208 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~--~~~~l~~~l~-~~~~gskIlv--TTR~~~ 278 (1622)
+..|..++....+.. ...+.+..+...+.+ ....+||||+|+... .-+.+...+. ....+++|+| +|.+.+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999998885433322 233445555555532 234589999998652 1111111111 1123555554 443322
Q ss_pred hhhh-------cCcccceEEeccCCHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000354 279 VLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGNC---VEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1622)
Q Consensus 279 v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~---~~~~~~~~~~~~I~~~c~glPLai~~ig~~L 342 (1622)
.... .++ ...+...|++.++-.+++..++... ..+..++-+|+.++..-|-.=.||.++-...
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2211 122 2246679999999999999988531 2223333344434433344455555554444
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.55 E-value=1.7e-06 Score=103.65 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=107.1
Q ss_pred CccccccHHHHHHHHHHHHc-----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
....|+||++.++.+..++. ......+.|+|++|+|||++|+.+++..... + .++..... .....+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~-~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPAL-EKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccc-cChHHHHHH
Confidence 45679999999998887765 2345678899999999999999999987632 1 12222111 111122233
Q ss_pred HHHhCCCC----C--CCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhhc-C
Q 000354 212 ADQLGLNF----C--EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSE-M 284 (1622)
Q Consensus 212 ~~~l~~~~----~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~-~ 284 (1622)
+..+.... + +.-.....+.+.. ..++.+..+|+|+..+...+.. .++ +.+-|..|||...+.... .
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~-~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYP-AMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHH-HHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 33322110 0 0000011111222 2234455556665444322211 111 234566677755443310 1
Q ss_pred cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~ 340 (1622)
.....+++++++.++..+++.+.++.... .-..+....|++.|+|.|-.+..+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 12346899999999999999998854221 22245788999999999965554444
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.54 E-value=5.1e-06 Score=95.42 Aligned_cols=253 Identities=15% Similarity=0.158 Sum_probs=143.2
Q ss_pred CccccccHHHHH---HHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 137 GHEFIESRESIL---NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 137 ~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
....++|.+..+ .-|...+..+.+....+||++|+||||||+.++..... . |..++...+-.+-++++++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~-----f~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--A-----FEALSAVTSGVKDLREIIE 94 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--c-----eEEeccccccHHHHHHHHH
Confidence 345567766554 23445566778888999999999999999999987652 2 3444443332222222222
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE--EcCcchhh--hhcCccc
Q 000354 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDVL--VSEMHCQ 287 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv--TTR~~~v~--~~~~~~~ 287 (1622)
. -.+....+++.+|++|.|-.- .+-+.+.. ....|.-|+| ||.|+... .......
T Consensus 95 ~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 95 E----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred H----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 1 122233479999999999643 34454433 3346777777 77776422 1123346
Q ss_pred ceEEeccCCHHHHHHHHHHHhCCCC-----CCc-hhHHHHHHHHHHhCCChHHHHHHH----HHhcCCC--chh-HHHHH
Q 000354 288 NNYCVSVLNKEEAWSLFSKVVGNCV-----EDP-DLQTVAIQVANECGGLPIAILTVA----RTLRNKP--LFV-WKKAL 354 (1622)
Q Consensus 288 ~~~~l~~L~~~ea~~Lf~~~~~~~~-----~~~-~~~~~~~~I~~~c~glPLai~~ig----~~L~~~~--~~~-w~~~l 354 (1622)
.++.+++|+.+|-.+++.+.+.+.. ... -.++...-|++.++|---++-... ..-+... ..+ .++++
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 7899999999999999998552111 111 124566778888888654433322 2222222 111 33333
Q ss_pred HHHHh-hccCCCChHHHHHHHHHHHhhcCCchhHHHHHHhhcccCCCCCcc-H-HHHHHH-hhccccc
Q 000354 355 QELRF-SARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAP-I-MDLLKY-GTGLGLF 418 (1622)
Q Consensus 355 ~~l~~-~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~-i-~~li~~-w~~~g~~ 418 (1622)
.+-.. ...+-+...++. .+|..|...=+++ ...+.++-++-.+.|-. | ..|+++ |...|+.
T Consensus 236 ~~~~~~~Dk~gD~hYdli-SA~hKSvRGSD~d--AALyylARmi~~GeDp~yiARRlv~~AsEDIGlA 300 (436)
T COG2256 236 QRRSARFDKDGDAHYDLI-SALHKSVRGSDPD--AALYYLARMIEAGEDPLYIARRLVRIASEDIGLA 300 (436)
T ss_pred hhhhhccCCCcchHHHHH-HHHHHhhccCCcC--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCC
Confidence 32221 011123455677 8899998887776 33444444444433322 2 555553 3444544
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.2e-08 Score=110.21 Aligned_cols=105 Identities=31% Similarity=0.434 Sum_probs=47.1
Q ss_pred CCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccC
Q 000354 534 MPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSN 612 (1622)
Q Consensus 534 l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~ 612 (1622)
.+.+|+|++++|.+..+-. +..|++|..|||++|.+..+ .--.+|-|.++|.|++|.|..|. ++++|++|..||+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSS 383 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccc
Confidence 3444444444444443322 44444455555555444433 11223444444455555444442 344555555555554
Q ss_pred CCCCCccCc-cccCCCCCCCEEEccCCccc
Q 000354 613 CSKLKVIPP-NVISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 613 ~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 641 (1622)
|+ +..+.. ..||+|+.|++|.+.+|.+.
T Consensus 384 N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 384 NQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 44 333221 11455555555555555443
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.44 E-value=1.9e-06 Score=106.42 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=109.8
Q ss_pred ccccccHHHHHHH---HHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000354 138 HEFIESRESILND---ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1622)
Q Consensus 138 ~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 214 (1622)
...++|++..+.. +..++.......+.|+|++|+||||+|+.+++.... . |+.++....-.+-++++.+.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~-----~~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--P-----FEALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----EEEEecccccHHHHHHHHHH
Confidence 4468888887666 777887777778899999999999999999987642 2 23332221111111122111
Q ss_pred hCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE--EcCcch--hhhhcCcccc
Q 000354 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHCQN 288 (1622)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv--TTR~~~--v~~~~~~~~~ 288 (1622)
.......+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +.........
T Consensus 84 ----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 84 ----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred ----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 111122368899999999875 34444443333 2454554 344432 1111122346
Q ss_pred eEEeccCCHHHHHHHHHHHhCCC-CCC-chhHHHHHHHHHHhCCChHHHHHHHHH
Q 000354 289 NYCVSVLNKEEAWSLFSKVVGNC-VED-PDLQTVAIQVANECGGLPIAILTVART 341 (1622)
Q Consensus 289 ~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~~~~~~~~I~~~c~glPLai~~ig~~ 341 (1622)
.+.+.+++.++.+.++.+.+... ... .-..+....|++.++|.+..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999876321 111 223566788999999998776555443
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.9e-07 Score=115.63 Aligned_cols=173 Identities=28% Similarity=0.381 Sum_probs=108.4
Q ss_pred ccccEEEecccCCCCCCCCCCCC--CccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEc
Q 000354 488 KNCIAIFLHDINTGELPEGLEYP--HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1622)
Q Consensus 488 ~~lr~Lsl~~~~~~~lp~~~~~~--~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 565 (1622)
..+..+.+.++.+.+++...... +|+.|+++.|.+ ..+|.. ...++.|+.|++++|.+..+|...+.+..|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34666667777777776666433 677777776665 333322 35667777777777777777666666677777777
Q ss_pred cCCCCCCcc-ccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcccccc
Q 000354 566 DQCILGDIA-IIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEF 644 (1622)
Q Consensus 566 ~~~~l~~l~-~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 644 (1622)
++|.+..++ .++.+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+.+|+.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 777776663 3355566777777766655666666677777777666554 4444444 666777777777666654
Q ss_pred ccccccccccChhhhCCCCCCCEEEEeecCCCC
Q 000354 645 EGLNLERNNASLQELSILSHLTTLEIHIRDAVI 677 (1622)
Q Consensus 645 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 677 (1622)
.+..++.+.+|+.|+++++....
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ----------ccccccccCccCEEeccCccccc
Confidence 12226666677777776665443
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.37 E-value=3.1e-06 Score=95.56 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=94.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
..+.+.|+|++|+|||+||+++++....+ ...+.|+.+..... . ...+.+.+ .
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~--------------------~~~~~~~~--~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F--------------------SPAVLENL--E 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h--------------------hHHHHhhc--c
Confidence 34678999999999999999999987533 34567776532100 0 00112222 2
Q ss_pred CcEEEEEcCCCCh---hhhhh-ccCCCCCC-CCCcEEEEEcCcc----------hhhhhcCcccceEEeccCCHHHHHHH
Q 000354 239 KKILVILDDIWTS---LDLER-TGIPFGDV-HRGCKILVTSRRR----------DVLVSEMHCQNNYCVSVLNKEEAWSL 303 (1622)
Q Consensus 239 kr~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gskIlvTTR~~----------~v~~~~~~~~~~~~l~~L~~~ea~~L 303 (1622)
+.-+||+||+|.. .+|+. +...+... ..|..|||+|.+. ++.. .+.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3459999999874 34542 22222211 2355565544432 4444 355567899999999999999
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 304 FSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 304 f~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
+++.+.... -.--+++..-|++.+.|..-++..+-
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 998884221 12224667788888887765554443
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=2e-05 Score=98.99 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=116.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC-------------------CcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 196 (1622)
....++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+.+...-.. .|.-++++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 456789999999999999886554 4667999999999999999988764211 11123333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+.+....+. .+..+.+... .++.-++|||++... ..++.+...+.......++
T Consensus 94 DAas~rgVD---------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 94 DAASNRGVD---------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred cccccccHH---------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 333222222 2222222211 246678999999876 3477766655544557788
Q ss_pred EEEcCcchhhh-hcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh-HHHHHH
Q 000354 271 LVTSRRRDVLV-SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTV 338 (1622)
Q Consensus 271 lvTTR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~i 338 (1622)
|+||++..-.. ........++++.++.++..+.+.+.++.+.. .-..+..+.|++.++|.. -|+..+
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88777654332 12233568999999999999999988753221 112456778999998865 454443
No 50
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=100.79 Aligned_cols=290 Identities=21% Similarity=0.222 Sum_probs=182.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
..|.+.++|.|||||||++-.+.. .+ ..| +.+.++....-.+...+.-.+...++..... ....+..+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 457899999999999999999998 44 446 4566666666667766666666667655332 2233344455553
Q ss_pred cCcEEEEEcCCCChh-hhhhccCCCCCCCCCcEEEEEcCcchhhhhcCcccceEEeccCCH-HHHHHHHHHHhC----CC
Q 000354 238 EKKILVILDDIWTSL-DLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNK-EEAWSLFSKVVG----NC 311 (1622)
Q Consensus 238 ~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~~~~~~~~~l~~L~~-~ea~~Lf~~~~~----~~ 311 (1622)
++|.++|+||..+.. .-..+...+..+...-.|+.|+|.... +.....+.+.+|+. +++.++|...+. ..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 799999999987763 222222233344455678889987753 34566778888885 489999988773 11
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchh----HHHHHHHHHhhccCCCC-hHHHHHHHHHHHhhcCCchh
Q 000354 312 VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV----WKKALQELRFSARNFTG-LEALLGSTIELIYNYLEGEE 386 (1622)
Q Consensus 312 ~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~----w~~~l~~l~~~~~~~~~-~~~i~~~~l~~sy~~L~~~~ 386 (1622)
.-.......+.+|.++..|.|++|..+++..+.-.... .++-...+... ..... -+......+..||.-|...+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 12233356688999999999999999999887665433 22222222211 11111 12222388999999999984
Q ss_pred HHHHHHhhcccCCCCCccHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHhhcccccCCCC--CCeEEechhHHHHHH
Q 000354 387 LKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDDT--ADWFSMLGFVRNVAI 464 (1622)
Q Consensus 387 lk~~fl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~mHdlv~d~a~ 464 (1622)
+-.|.-++.|...|+.. ...|.+.|-... .....+...+-.+++.+++...+. ...|+.-+-+|.|+.
T Consensus 242 -~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 242 -RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred -HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 88899999998843332 333444442210 011122233566778887754432 335677777777777
Q ss_pred HHHhh
Q 000354 465 SIASI 469 (1622)
Q Consensus 465 ~~~~~ 469 (1622)
.+-.+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 66444
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=6.8e-07 Score=110.70 Aligned_cols=183 Identities=31% Similarity=0.372 Sum_probs=127.1
Q ss_pred EEecccCC-CCCCCCCCCCCccEEEccCCCCCCCCChhhhcCCC-CccEEEecCCcCcccCccCCCCCCCcEEEccCCCC
Q 000354 493 IFLHDINT-GELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMP-KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCIL 570 (1622)
Q Consensus 493 Lsl~~~~~-~~lp~~~~~~~Lr~L~L~~n~~~~~lp~~~f~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 570 (1622)
+....+.+ .........+.+..|.+..|.+ ..++... ..++ +|+.|++++|.+..+|..+..+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 44444444 3333333567788888887766 4555532 4443 78888888888888877788888888888888888
Q ss_pred CCcc-ccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCccccccccccc
Q 000354 571 GDIA-IIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNL 649 (1622)
Q Consensus 571 ~~l~-~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 649 (1622)
.+++ ..+.+.+|+.|++++|.+..+|..+..+..|++|.+++|. +..++.. +.++.++..|.+.+|.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 8874 3448888888888888888888777777778888888875 3344444 677778877777666553
Q ss_pred cccccChhhhCCCCCCCEEEEeecCCCCCCcccccccccceE
Q 000354 650 ERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYK 691 (1622)
Q Consensus 650 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 691 (1622)
..+..++.+.+|+.|+++.+.+..++......+++.+.
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEe
Confidence 12567778888999999998888776632334444433
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.7e-05 Score=89.77 Aligned_cols=197 Identities=23% Similarity=0.253 Sum_probs=128.0
Q ss_pred ccccHHHHHHHHHHHHc----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 140 FIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
.+.+|+++++++...|. .....-+.|+|..|+|||+.++.|.+..+....=..+++|++....+..+++..|++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999998876 33333499999999999999999999887432222289999999999999999999999
Q ss_pred C-CCCCCCChHHHHHHHHHHHHh-cCcEEEEEcCCCChhhh-----hhccCCCCCCCCCcEEEE--EcCcchhhhh----
Q 000354 216 G-LNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDL-----ERTGIPFGDVHRGCKILV--TSRRRDVLVS---- 282 (1622)
Q Consensus 216 ~-~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~-----~~l~~~l~~~~~gskIlv--TTR~~~v~~~---- 282 (1622)
+ ....+....+....+.+.+.. ++.+++|||+++....- -.+....... .++|+| ++-+......
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhh
Confidence 5 333345666677777777765 68899999999876322 1221111111 444443 3333322221
Q ss_pred ---cCcccceEEeccCCHHHHHHHHHHHhC----CCCCCchhHHHHHHHHHHhCC-ChHHHHHHH
Q 000354 283 ---EMHCQNNYCVSVLNKEEAWSLFSKVVG----NCVEDPDLQTVAIQVANECGG-LPIAILTVA 339 (1622)
Q Consensus 283 ---~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~g-lPLai~~ig 339 (1622)
.++.. .+..+|.+.+|-...+..++. +..-++..-++...++..-+| .=.||.++-
T Consensus 176 v~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 176 VKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 12223 378899999999999999882 222233333334444444443 344444443
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.22 E-value=3.8e-06 Score=86.15 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=81.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhcc---CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG---RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE-ESDSERIMMLCNR 234 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 234 (1622)
+.+++.|+|.+|+|||++++.+++..... ..-..++|+++....+...+.+.|+..++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999886421 0124577999988889999999999999987666 4556666777777
Q ss_pred HHhcCcEEEEEcCCCCh-h--hhhhccCCCCCCCCCcEEEEEcCc
Q 000354 235 LKREKKILVILDDIWTS-L--DLERTGIPFGDVHRGCKILVTSRR 276 (1622)
Q Consensus 235 l~~~kr~LlVlDdv~~~-~--~~~~l~~~l~~~~~gskIlvTTR~ 276 (1622)
+.+.+..+||+||++.. . .++.+..... ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87666789999999765 2 2333322222 567778877665
No 54
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=2.4e-06 Score=87.15 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=81.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1622)
.+++.|.|+-|+||||++++++++.. ....++++++.+......... +..+.+.+.. ..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhh-ccC
Confidence 36899999999999999999998775 235577776655433211000 0111222222 247
Q ss_pred cEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhh-----cCcccceEEeccCCHHHH
Q 000354 240 KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNKEEA 300 (1622)
Q Consensus 240 r~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-----~~~~~~~~~l~~L~~~ea 300 (1622)
..+||+|+|....+|......+.+..+..+|++|+.+...... ..|....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999998888776666555567899999998766532 223345789999987763
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.1e-07 Score=106.72 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=95.4
Q ss_pred cccccEEEecccCCCCCCC--CC-CCCCccEEEccCCCCCCCCC-hhhhcCCCCccEEEecCCcCcccCcc--CCCCCCC
Q 000354 487 LKNCIAIFLHDINTGELPE--GL-EYPHLTSLCMNPKDPFLHIP-DNFFAGMPKLRVLVLTRMKLLTLPSS--FCHLPNL 560 (1622)
Q Consensus 487 ~~~lr~Lsl~~~~~~~lp~--~~-~~~~Lr~L~L~~n~~~~~lp-~~~f~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L 560 (1622)
++++|.+++.++.....+. .. .|++++.|+|+.|-+....+ ..+...+++|+.|+|+.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445666666655554442 12 56677777776664322111 12345567777777777666532222 1245667
Q ss_pred cEEEccCCCCC--Cc-cccCCCCCCCEEEccCCC-CcccchhhhcCCCCCEEEccCCCCCCccCc-cccCCCCCCCEEEc
Q 000354 561 ESLCLDQCILG--DI-AIIGNLKNLEILSLCCSD-IEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1622)
Q Consensus 561 r~L~L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~-i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1622)
+.|.|++|.++ ++ .....+++|+.|+|.+|. +..--.+...++.|+.|||++|+ +..++. ..++.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhc
Confidence 77777777664 23 344556666677776663 22212223445666667776666 333331 11566666666666
Q ss_pred cCCccccccccccccccccChhhhCCCCCCCEEEEeecCCCCC
Q 000354 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVIL 678 (1622)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 678 (1622)
+.|.+..- ... ..........+.+|+.|++..|.+...
T Consensus 279 s~tgi~si-~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 279 SSTGIASI-AEP----DVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccCcchh-cCC----CccchhhhcccccceeeecccCccccc
Confidence 66655410 000 001112233455666666666665433
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.3e-07 Score=106.47 Aligned_cols=180 Identities=22% Similarity=0.248 Sum_probs=123.1
Q ss_pred ccccccEEEecccCCCCCCCC---C-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCc--ccCccCCCCCC
Q 000354 486 MLKNCIAIFLHDINTGELPEG---L-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL--TLPSSFCHLPN 559 (1622)
Q Consensus 486 ~~~~lr~Lsl~~~~~~~lp~~---~-~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~ 559 (1622)
....+|.|+++.|-+....+- . .+++|+.|+++.|.+........-..+.+|+.|.|+.|+++ ++-.-...+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 356788888888765543322 1 68889999999887654443333345788899999999887 44444567788
Q ss_pred CcEEEccCCCCCCc--cccCCCCCCCEEEccCCCCcccc--hhhhcCCCCCEEEccCCCCCCccCcccc------CCCCC
Q 000354 560 LESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLP--REIGELTQLKLLDLSNCSKLKVIPPNVI------SSLSQ 629 (1622)
Q Consensus 560 Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~L~~L~~L~L~~~~~l~~lp~~~l------~~L~~ 629 (1622)
|..|+|.+|....+ .+...+..|+.|||++|.+..++ ..++.|+.|..|+++.|. +.++..-.. ....+
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccccc
Confidence 89999998853222 45667888999999988887776 457888899999888876 554321112 45678
Q ss_pred CCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCCC
Q 000354 630 LEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1622)
Q Consensus 630 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1622)
|+.|++..|.+. .......+..+.+|+.|.+.++.+.
T Consensus 303 L~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCccc----------cccccchhhccchhhhhhccccccc
Confidence 899998888774 1223455666667777776655443
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.5e-05 Score=102.06 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=114.3
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCC-------------------cceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 196 (1622)
....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-... |.-++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3556889999999999888866655 4589999999999999999987642111 1112222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+......+..+ ++|...+. ..-..+++-++|+|++... ..++.+...+.......++|++|
T Consensus 94 dAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 94 DAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 22211122111 22222111 0111367889999999765 45666655554444556666655
Q ss_pred Ccc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 275 RRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 275 R~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.+. .+..........|++.+|+.++....+.+.+.... .....+....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 33322223356899999999999999988774321 1122456788999999988644433
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.19 E-value=1.7e-05 Score=96.12 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=112.1
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcc-eEEEEEecCCcCH--HHHHH--HHH
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDL--KRIRR--EIA 212 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~i~~--~i~ 212 (1622)
...++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++.... ..+. ..+.+++++..+. ..+.. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchh
Confidence 4467899999999999988776667889999999999999999987752 2222 2345554432110 00000 000
Q ss_pred HHhCCC-CCCCChHHHHHHHHHHHHh-----cCcEEEEEcCCCChh--hhhhccCCCCCCCCCcEEEEEcCcch-hhhhc
Q 000354 213 DQLGLN-FCEESDSERIMMLCNRLKR-----EKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSE 283 (1622)
Q Consensus 213 ~~l~~~-~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gskIlvTTR~~~-v~~~~ 283 (1622)
..++.. .......+.++.+.+.... +.+-+||+||+.... ....+...+......+++|+||.+.. +....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 0001112233333322221 345589999997652 23333333333334567888775432 22211
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
......+++.+++.++....+.+.+...... -..+....+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 1224578899999999999998876321111 1245677888888887655443
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.6e-05 Score=93.26 Aligned_cols=178 Identities=10% Similarity=0.117 Sum_probs=111.1
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCc-------------------ceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIF-------------------DEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~~wv 196 (1622)
....++|.+..++.+...+..+++ ..+.++|+.|+||||+|+.+++...-...+ .-.+++
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 345688999999999888876554 567899999999999999999876411111 111222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCChh--hhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gskI 270 (1622)
+.+.. ...+.+..+.+.+. .+++-++|+|++.... .++.+...+.......++
T Consensus 94 ~~~~~---------------------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 94 DAASR---------------------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred ccccc---------------------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 21111 11222333333321 2456799999998763 466665555544456677
Q ss_pred EEEcCcch-hhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 271 LVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 271 lvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
|++|.+.. +...-.+....+++.+++.++..+.+.+.+.... ..-.++.+..|++.++|.|-.+.
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77765543 3221122346899999999999998888663211 11123557789999999885433
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.8e-05 Score=91.36 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=116.8
Q ss_pred cccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhh----ccCCcceEEEEEe-cCCcCHHHHHHHHH
Q 000354 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK----EGRIFDEVVFAEV-SQTPDLKRIRREIA 212 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~i~~~i~ 212 (1622)
..++|.+..++.+...+..+.. ....++|+.|+||||+|+.+++..- ...|+|...|... +....+.++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3567888889999999876554 5778999999999999999998652 2345676666542 233333332 2333
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCC--CChhhhhhccCCCCCCCCCcEEEEEcCcchhhhh-cCcccce
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDI--WTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQNN 289 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-~~~~~~~ 289 (1622)
+.+.... . .+++-++|+|++ .+...++.+...+.....++.+|++|.+.+.... -......
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332110 1 245556666665 4456788888888777788999988876643321 1223568
Q ss_pred EEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 290 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
+.+.++++++....+.+.+.. ...+.+..++..++|.|..+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999998888765531 1123467888999999865543
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.16 E-value=1.3e-05 Score=91.01 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000354 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1622)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 222 (1622)
+.+..++.+.+++.......|.|+|..|+|||++|+.+++.... .....++++++.-.+. .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh------H-----------
Confidence 34566777777765556678999999999999999999987652 2334566654432210 0
Q ss_pred ChHHHHHHHHHHHHhcCcEEEEEcCCCChh---hhh-hccCCCCC-CCCCcEEEEEcCcchh---------hhhcCcccc
Q 000354 223 SDSERIMMLCNRLKREKKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRRDV---------LVSEMHCQN 288 (1622)
Q Consensus 223 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gskIlvTTR~~~v---------~~~~~~~~~ 288 (1622)
..+...+ .+.-+||+||++... .|. .+...+.. ...+.+||+||+.... .. ......
T Consensus 82 ------~~~~~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~-r~~~~~ 152 (226)
T TIGR03420 82 ------PEVLEGL--EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT-RLAWGL 152 (226)
T ss_pred ------HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH-HHhcCe
Confidence 0111112 233489999998653 232 23222211 1233478898885321 11 122245
Q ss_pred eEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 000354 289 NYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1622)
Q Consensus 289 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~ 340 (1622)
.+++.++++++-..+++.++.... -.--++..+.|++.+.|.|..+.-+..
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 799999999999999987652111 112245567788888888876665543
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=0.00013 Score=91.89 Aligned_cols=183 Identities=12% Similarity=0.075 Sum_probs=111.2
Q ss_pred CccccccHHHHHHHHHHHHcC----CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
....++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-++.++..+... +..++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHHH
Confidence 345688999999999998862 2367899999999999999999998874 33 33445555433332 22222
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh------hhhccCCCCCCCCCcEEEEEcCcchhhh--hcC
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGDVHRGCKILVTSRRRDVLV--SEM 284 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gskIlvTTR~~~v~~--~~~ 284 (1622)
....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+..-.. ...
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 2211100 01113678999999987521 333332222 12344666664432111 011
Q ss_pred cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L 342 (1622)
.....+++.+++.++....+.+.+...... -..++...|++.++|-.-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234678999999999999888877321111 124567899999999776555444333
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.15 E-value=1.4e-05 Score=83.52 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000354 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1622)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 222 (1622)
||+..++++...+.....+.+.|+|.+|+|||++|+.+++.... .-..++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 67888899988887666678999999999999999999998752 12446677665544322221111100
Q ss_pred ChHHHHHHHHHHHHhcCcEEEEEcCCCCh-----hhhhhccCCCCCC---CCCcEEEEEcCcch
Q 000354 223 SDSERIMMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGDV---HRGCKILVTSRRRD 278 (1622)
Q Consensus 223 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~---~~gskIlvTTR~~~ 278 (1622)
............+..+||+||++.. ..+..+...+... ..+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111357789999999864 1222222222211 35788888888664
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.6e-05 Score=97.06 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=112.7
Q ss_pred CccccccHHHHHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhccC-------------------CcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 196 (1622)
....++|.+...+.|..++..++ ...+.++|+.|+||||+|+.+++...-.. .|.-++.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 45678999999999999988655 45779999999999999999988764211 11112222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+.+.... .+.++.+.... ..+++-++|+|+|... ...+.+...+.....+.++
T Consensus 93 DAAs~~~---------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 93 DAASRTK---------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred cccccCC---------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 2222222 22222222222 1257779999999875 3455555444444456677
Q ss_pred EEEcCcch-hhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 271 LVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 271 lvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
|++|.+.. +..........+++.+++.++..+.+.+.+..... ....+....|++.++|-+-.+.
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 77776543 22212344568999999999999999887743211 1223557789999999774443
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.13 E-value=0.00023 Score=91.66 Aligned_cols=171 Identities=18% Similarity=0.158 Sum_probs=102.7
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCc---ceEEEEEecCC---cCHHHHHHHH
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEVSQT---PDLKRIRREI 211 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~i~~~i 211 (1622)
...++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 44578999888888887765556689999999999999999998876533333 12335544321 1222221111
Q ss_pred ---------------HHHhCCC------------------CCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhh
Q 000354 212 ---------------ADQLGLN------------------FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER 256 (1622)
Q Consensus 212 ---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~ 256 (1622)
+...+.. ..+.-+......+.+.+. ++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 1111110 011112234445555553 67788887766654 35777
Q ss_pred ccCCCCCCCCCcEEEE--EcCcchhhhhc-CcccceEEeccCCHHHHHHHHHHHhC
Q 000354 257 TGIPFGDVHRGCKILV--TSRRRDVLVSE-MHCQNNYCVSVLNKEEAWSLFSKVVG 309 (1622)
Q Consensus 257 l~~~l~~~~~gskIlv--TTR~~~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 309 (1622)
+...+....+...|+| ||++....... ......+.+.+++.+|.+.++++.+.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 7666655555555555 66655432211 12234678999999999999998774
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=98.12 E-value=3.3e-05 Score=92.17 Aligned_cols=182 Identities=14% Similarity=0.045 Sum_probs=107.9
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcc-eEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.++.++.|.+++..+..+.+.++|++|+||||+|+.+++...- ..|. .++-++.++...... .++++..+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~-vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDV-VRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHH-HHHHHHHH
Confidence 34567888888888888887766667889999999999999999988642 2232 233334343333322 22222211
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh--hhhhccCCCCCCCCCcEEEEEcCcch-hhhhcCcccceEEe
Q 000354 216 GLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYCV 292 (1622)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gskIlvTTR~~~-v~~~~~~~~~~~~l 292 (1622)
..... ....++.-++|+|+++... ..+.+...+......+++|+++.... +...-......+++
T Consensus 89 ~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 89 AQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred Hhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 10000 0002456799999998762 33333332322335577777765432 21111112457899
Q ss_pred ccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 293 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
.++++++....+...+....-. -..+....|++.++|-.-.
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 9999999999998877322111 1134577888888887643
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3e-05 Score=96.17 Aligned_cols=179 Identities=12% Similarity=0.136 Sum_probs=114.4
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC------------------------Ccc
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR------------------------IFD 191 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------~F~ 191 (1622)
....++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+++...-.. .|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 455788999999999999886655 4678999999999999999998764210 011
Q ss_pred eEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCC
Q 000354 192 EVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVH 265 (1622)
Q Consensus 192 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~ 265 (1622)
-+++++..... ..+.+..+.+.+. .+++-++|+|+++.. ..++.+...+....
T Consensus 94 DviEIdAas~~---------------------gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 94 DYIEMDAASNR---------------------GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred cceEecccccC---------------------CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 12222222211 2233333333322 356779999999876 45666666665444
Q ss_pred CCcEEEEEcC-cchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 266 RGCKILVTSR-RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 266 ~gskIlvTTR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
.++++|++|. ...+..........+.+..++.++..+.+.+.++..... ...+..+.|++.++|.|.....
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5566555554 444443223335689999999999999998877432211 1234567899999999864443
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.7e-05 Score=93.74 Aligned_cols=189 Identities=13% Similarity=0.078 Sum_probs=112.5
Q ss_pred ccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000354 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
...++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++...-...+...+|+|.+.. .+.....
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCC
Confidence 45678999988888888876554 46699999999999999999988753222222223221100 0000000
Q ss_pred -----CCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCc-chhhhhcC
Q 000354 217 -----LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEM 284 (1622)
Q Consensus 217 -----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~-~~v~~~~~ 284 (1622)
.+.......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+.....
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000111222333333222 246779999999865 4566665555544445565655543 33322112
Q ss_pred cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
.....+++.+++.++....+.+.+..... ....+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 33568999999999999999987732111 112456788999999988544
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.08 E-value=5.3e-05 Score=84.98 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=107.7
Q ss_pred cccccHHHHHH---HHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 139 EFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 139 ~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
..+||.+..+. -|.++++.+.+..+.+||++|+||||||+.+....+... +.||..|....-..-.++|.++-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 34556555432 244556678889999999999999999999998776432 66788776654433344444332
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCC--hhhhhhccCCCCCCCCCcEEEE--EcCcchhh--hhcCcccce
Q 000354 216 GLNFCEESDSERIMMLCNRLKREKKILVILDDIWT--SLDLERTGIPFGDVHRGCKILV--TSRRRDVL--VSEMHCQNN 289 (1622)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gskIlv--TTR~~~v~--~~~~~~~~~ 289 (1622)
. . .....++|.+|++|.|-. ..+-+.+ +|...+|.-++| ||.|...- ...+....+
T Consensus 214 q-------------~--~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 214 Q-------------N--EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred H-------------H--HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccce
Confidence 1 0 111236889999999853 3344433 344557877776 78776431 112445678
Q ss_pred EEeccCCHHHHHHHHHHHh---CC------CCCCch---hHHHHHHHHHHhCCCh
Q 000354 290 YCVSVLNKEEAWSLFSKVV---GN------CVEDPD---LQTVAIQVANECGGLP 332 (1622)
Q Consensus 290 ~~l~~L~~~ea~~Lf~~~~---~~------~~~~~~---~~~~~~~I~~~c~glP 332 (1622)
+.++.|+.++-..++.+.+ ++ ..+++. ...+.+-++..|.|-.
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9999999999998888744 22 111211 1245555666777754
No 70
>PLN03150 hypothetical protein; Provisional
Probab=98.07 E-value=8e-06 Score=105.88 Aligned_cols=104 Identities=23% Similarity=0.412 Sum_probs=74.1
Q ss_pred CccEEEecCCcCc-ccCccCCCCCCCcEEEccCCCCC-Cc-cccCCCCCCCEEEccCCCCc-ccchhhhcCCCCCEEEcc
Q 000354 536 KLRVLVLTRMKLL-TLPSSFCHLPNLESLCLDQCILG-DI-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLS 611 (1622)
Q Consensus 536 ~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~ 611 (1622)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+ ..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777776 66777777777888888777775 33 46777788888888877776 677778888888888888
Q ss_pred CCCCCCccCccccCC-CCCCCEEEccCCcc
Q 000354 612 NCSKLKVIPPNVISS-LSQLEELYLGNTSV 640 (1622)
Q Consensus 612 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~~ 640 (1622)
+|.....+|.. ++. +.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 77755567766 443 34566777776643
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=6.7e-06 Score=97.26 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=70.8
Q ss_pred hcCccceEEEEccceeEEeccchhhhccccccccceeecccccccchhhccCccccccccccceeEeeccCCccccCCCC
Q 000354 1120 YFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSS 1199 (1622)
Q Consensus 1120 ~l~sL~~L~I~c~~l~~i~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~ 1199 (1622)
.+.+++.|+|+.+.++.++. .+++|++|.|.+|.+|+.++. .+ .++|++|.|++|+++..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~sLP~-- 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEISGLPE-- 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCccccccccc--
Confidence 34555555555224554432 345566677767766666632 11 24677777777766665543
Q ss_pred CccCCccEEEEec--cCCCccccchhhhhhcccccEEEEecccccccccccccccccccccccccccccccccccccccc
Q 000354 1200 PSFRNLITLEVWY--CKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFY 1277 (1622)
Q Consensus 1200 ~~l~sL~~L~I~~--C~~L~~l~~~~~~~~L~sL~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~sl~ 1277 (1622)
+|+.|+|.. |..+..+| ++|+.|.+.++...... ......+++|+.|.+.+|..+. +|
T Consensus 113 ----sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~-------~lp~~LPsSLk~L~Is~c~~i~-LP 172 (426)
T PRK15386 113 ----SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQA-------RIDNLISPSLKTLSLTGCSNII-LP 172 (426)
T ss_pred ----ccceEEeCCCCCcccccCc--------chHhheecccccccccc-------ccccccCCcccEEEecCCCccc-Cc
Confidence 466666642 22233332 34556666433211100 0011245677777777776553 33
Q ss_pred CCCccccCCCcceEEeccCc
Q 000354 1278 SGNYTFKFPCLEDLFVIECP 1297 (1622)
Q Consensus 1278 ~~~~~~~l~sL~~L~I~~Cp 1297 (1622)
.+ ++ .+|+.|.+..+.
T Consensus 173 ~~-LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 173 EK-LP---ESLQSITLHIEQ 188 (426)
T ss_pred cc-cc---ccCcEEEecccc
Confidence 22 22 477777776653
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.3e-05 Score=91.96 Aligned_cols=177 Identities=11% Similarity=0.130 Sum_probs=111.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcc-----------------------e
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-----------------------E 192 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-----------------------~ 192 (1622)
....++|.+..+..|...+..+++ ..+.++|+.|+||||+|+.+++...-..... -
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 355678999988888887765553 5789999999999999999998764211110 1
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCC
Q 000354 193 VVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHR 266 (1622)
Q Consensus 193 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 266 (1622)
++.++..... ..+.++.+.+... .+++-++|+|+++.. ..++.+...+.....
T Consensus 99 v~eidaas~~---------------------~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 99 IIEIDAASKT---------------------SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred EEEeeccCCC---------------------CHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 1112221111 2223333333221 257789999999875 457777666555455
Q ss_pred CcEEEE-EcCcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 267 GCKILV-TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 267 gskIlv-TTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
.+.+|+ ||+...+..........+++.+++.++....+.+.+...... ...+....|++.++|.+--+
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 666655 555444443212234578999999999999999888432211 12345677999999877443
No 73
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=0.00016 Score=96.25 Aligned_cols=261 Identities=18% Similarity=0.208 Sum_probs=150.9
Q ss_pred cccHHHHHHHHHHHHc---CCCeEEEEEEeCCCccHHHHHHHHHHHhhcc-CCcceEEEEEecCCcC---HHHHHHHHHH
Q 000354 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFAEVSQTPD---LKRIRREIAD 213 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~i~~~i~~ 213 (1622)
++||+.+++.|...+. .....++.|.|..|||||+|+++|......+ ..|-.-.+-....+.. ....+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999998887 4556799999999999999999999887633 1111111111112211 2223333333
Q ss_pred Hh-------------------CCCC------------------C-----CCChHHHHH-----HHHHHHHhcCcEEEEEc
Q 000354 214 QL-------------------GLNF------------------C-----EESDSERIM-----MLCNRLKREKKILVILD 246 (1622)
Q Consensus 214 ~l-------------------~~~~------------------~-----~~~~~~~~~-----~l~~~l~~~kr~LlVlD 246 (1622)
++ +... + +........ .+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 1110 0 000111111 12222334679999999
Q ss_pred CC-CChh-h---hhhccCCCCC-CCCCcEEEEEcCcchhhhh---cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchh
Q 000354 247 DI-WTSL-D---LERTGIPFGD-VHRGCKILVTSRRRDVLVS---EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDL 317 (1622)
Q Consensus 247 dv-~~~~-~---~~~l~~~l~~-~~~gskIlvTTR~~~v~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 317 (1622)
|+ |-+. . ...+.....- ...-..|..+......... .-.....+.|.||+..+...+.....+... ...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--ccc
Confidence 98 3321 1 1111111110 0001123333332222111 233456899999999999999999887532 223
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhcCCC------chh-HHHHHHHHHhhccCCCChHHHHHHHHHHHhhcCCchhHHHH
Q 000354 318 QTVAIQVANECGGLPIAILTVARTLRNKP------LFV-WKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLT 390 (1622)
Q Consensus 318 ~~~~~~I~~~c~glPLai~~ig~~L~~~~------~~~-w~~~l~~l~~~~~~~~~~~~i~~~~l~~sy~~L~~~~lk~~ 390 (1622)
.+....|+++..|.|+=+..+-..+.... +.. |..=...+. .....+.+. ..+..-.+.||.. .++.
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv-~~l~~rl~kL~~~-t~~V 313 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVV-EFLAARLQKLPGT-TREV 313 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHH-HHHHHHHhcCCHH-HHHH
Confidence 46788999999999999999988887642 111 543333332 223344444 5678888999998 6999
Q ss_pred HHhhcccCCCCCccHHHHHHH
Q 000354 391 FLLCSLMKHPCDAPIMDLLKY 411 (1622)
Q Consensus 391 fl~~a~fp~~~~~~i~~li~~ 411 (1622)
+...|++-. .++.+-|-..
T Consensus 314 l~~AA~iG~--~F~l~~La~l 332 (849)
T COG3899 314 LKAAACIGN--RFDLDTLAAL 332 (849)
T ss_pred HHHHHHhCc--cCCHHHHHHH
Confidence 999999977 3444444433
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.04 E-value=9.9e-05 Score=88.59 Aligned_cols=183 Identities=13% Similarity=0.049 Sum_probs=107.9
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcce-EEEEEecCCcCHHHHHHHHHHHhC
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
...++|+++.++.+..++.....+.+.|+|..|+||||+|+.+++..... .+.. .+-++.++......+ ++.+..+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~~-~~~i~~~~ 93 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGIDVI-RNKIKEFA 93 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchHHH-HHHHHHHH
Confidence 44578999999999999987666678999999999999999999886422 2221 111222222222211 11111111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcch-hhhhcCcccceEEec
Q 000354 217 LNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYCVS 293 (1622)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~-v~~~~~~~~~~~~l~ 293 (1622)
...+ .....+-+||+|+++.. +....+...+......+++|+++.... +..........+++.
T Consensus 94 ~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 94 RTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred hcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 0000 00134568999998765 233344333333344567777764332 211111224478999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 294 VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 294 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
+++.++....+.+.+..... .-..+....+++.++|.+--+..
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998887742211 11245677889999998765433
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=8.4e-05 Score=94.10 Aligned_cols=196 Identities=12% Similarity=0.116 Sum_probs=111.3
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCC--cceEEEEEecCCcCHHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI--FDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
....++|.+..+..|..++..+++ ..+.++|..|+||||+|+.+++...-... ..+...- .+..-..-+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCccHHHHHHHc
Confidence 455688999989999998886655 56789999999999999999876531100 0000000 0000000001100
Q ss_pred H-----hCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhhh
Q 000354 214 Q-----LGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLV 281 (1622)
Q Consensus 214 ~-----l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~ 281 (1622)
. +..+.......+.+..+.+... .++.-++|+|+|+.. ..++.+...+.......++|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 0 0000000112223333333221 245668999999876 45666665555444556666555 4334333
Q ss_pred hcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 282 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
........+++++++.++....+.+.+...... ...+....|++.++|.+--+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 223345789999999999999998877422111 1235577888999887754433
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=1.3e-05 Score=93.86 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=63.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHH------HHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERI------MMLC 232 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~------~~l~ 232 (1622)
.-..|+|++|+||||||+++|+..... +|+.++||.+.+.. ++.++++.|...+-....+.+..... -...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999998864 89999999999887 78888888863221111111111111 1122
Q ss_pred HHH-HhcCcEEEEEcCCCCh
Q 000354 233 NRL-KREKKILVILDDIWTS 251 (1622)
Q Consensus 233 ~~l-~~~kr~LlVlDdv~~~ 251 (1622)
+++ ..+++++|++|++-..
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 232 2479999999999654
No 77
>PTZ00202 tuzin; Provisional
Probab=98.01 E-value=0.00092 Score=78.69 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=103.5
Q ss_pred CCCccccccHHHHHHHHHHHHcC---CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 135 NEGHEFIESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
+.+...|+||+.++.+|...|.+ +..+++.|.|++|+|||||++.+..... ....+++.. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHH
Confidence 34566899999999999999862 2346899999999999999999996654 113333333 679999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHH----h-cCcEEEEEc--CCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhh--
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLK----R-EKKILVILD--DIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-- 282 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~----~-~kr~LlVlD--dv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-- 282 (1622)
+.+||.+ +.....+....+.+.+. . +++.+||+- +-.+....-.=...+.....-|.|++----+.+-..
T Consensus 330 L~ALGV~-p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVP-NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCC-CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 9999974 23333444445544443 2 567777774 222221100000112223345667764433322111
Q ss_pred cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 283 EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 283 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
....-+.|.+++++.++|.+.-.+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 23334578999999999998877654
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.7e-05 Score=93.21 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=111.2
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhcc-------------------CCcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 196 (1622)
....++|.+..++.|...+..++. ..+.++|+.|+||||+|+.+++...-. ..|.-++++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 355688999999999988876554 467899999999999999999865311 012223333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE-E
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-T 273 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv-T 273 (1622)
+......+.++ ++|++.+ ...-..+++-++|+|++... ..++.+...+......+++|+ |
T Consensus 94 daas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 32222222211 1111111 10111357779999999765 446666555554445565665 4
Q ss_pred cCcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh-HHHHHHHH
Q 000354 274 SRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTVAR 340 (1622)
Q Consensus 274 TR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~ig~ 340 (1622)
|....+...-......+++.+++.++-...+.+.+.... -...+.....|++.++|-+ .|+..+-.
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 443333321123356899999999998888887663211 1122445678889999866 34444433
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=1.4e-05 Score=94.51 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=41.2
Q ss_pred CccccEEEEeccCCccccCCchhhhhccCCcEEEEeccCCcceeeccccCcccccccccCccCeecccCCCccccccCCc
Q 000354 939 IQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGI 1018 (1622)
Q Consensus 939 l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~l~~~~ 1018 (1622)
+.+++.|+|++| .|+.++ .-.++|++|.|.+|.+|+.++.. .+++|++|.|++|+.+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCch----------hhhhhhheEccCcccccccc---
Confidence 355667777776 566652 11235777777777776655321 13567777777776666554
Q ss_pred ccccCCCcceEEEe
Q 000354 1019 HTLEWPLLKRLEVY 1032 (1622)
Q Consensus 1019 ~~~~~~sL~~L~I~ 1032 (1622)
++|+.|++.
T Consensus 112 -----~sLe~L~L~ 120 (426)
T PRK15386 112 -----ESVRSLEIK 120 (426)
T ss_pred -----cccceEEeC
Confidence 456666654
No 80
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=6.4e-05 Score=91.35 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=112.7
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++...-...... ..+....+-..+...+...+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISSDV 92 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCccc
Confidence 4556889999999999888876654 6899999999999999999987642111000 00011111111111110000
Q ss_pred -CCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE-EcCcchhhhhcCccc
Q 000354 216 -GLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSEMHCQ 287 (1622)
Q Consensus 216 -~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv-TTR~~~v~~~~~~~~ 287 (1622)
..+.......+.+..+.+.+. .+++-++|+|++... +.++++...+........+|+ ||....+...-....
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 000000111233333333332 356779999999865 457777655544334555554 444444433223335
Q ss_pred ceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 288 NNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 288 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
..|.+.+++.++..+.+.+.+..... .-.++....|++.++|.+--
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHH
Confidence 67999999999999988887642211 11245678899999998843
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00013 Score=90.44 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=110.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCC-------------------cceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 196 (1622)
....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++...-... +..++.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 345688998888888888776665 56899999999999999999987642110 1112333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+.+....+..+ ++|....... . ..+++-++|+|++... ...+.+...+........+|++|
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~~---------------p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGYR---------------P-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhhC---------------h-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 33322222222 1222211100 0 1256779999999765 34455544443333344444444
Q ss_pred Cc-chhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCC-ChHHHHHHHHHh
Q 000354 275 RR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG-LPIAILTVARTL 342 (1622)
Q Consensus 275 R~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~ig~~L 342 (1622)
.+ ..+...-......+++.+++.++....+.+.+..... .-..+....|++.++| +..|+..+-.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 43 3333322334568999999999999998887732111 1124567788887765 466666665543
No 82
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=1.2e-05 Score=104.28 Aligned_cols=81 Identities=32% Similarity=0.474 Sum_probs=55.5
Q ss_pred CcEEEccCCCCCC-c-cccCCCCCCCEEEccCCCCc-ccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEcc
Q 000354 560 LESLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1622)
Q Consensus 560 Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1622)
++.|+|++|.+.. + ..++.|.+|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. +++|++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 5667777776653 2 56777777777777777766 66767777777777777777644456655 6777777777777
Q ss_pred CCccc
Q 000354 637 NTSVE 641 (1622)
Q Consensus 637 ~~~~~ 641 (1622)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 77665
No 83
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.97 E-value=2e-05 Score=89.08 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=63.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHH------HHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSE------RIMM 230 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~------~~~~ 230 (1622)
.-..++|+|++|+|||||++++++..... +|+.++|+.+..+ .++.++++.+...+-...-+.+... .+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999988754 8999999998777 7899999998332211111111111 1111
Q ss_pred HHHH-HHhcCcEEEEEcCCCCh
Q 000354 231 LCNR-LKREKKILVILDDIWTS 251 (1622)
Q Consensus 231 l~~~-l~~~kr~LlVlDdv~~~ 251 (1622)
..+. ..++++.++++|++-..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222 23479999999999654
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.96 E-value=0.00015 Score=79.59 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=96.0
Q ss_pred HHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhcc--------------------CCcceEEEEEec-CCcCHHHH
Q 000354 150 DILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVFAEVS-QTPDLKRI 207 (1622)
Q Consensus 150 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~i 207 (1622)
.+.+.+..+++ ..+.++|+.|+||||+|+.+.+...-. .+.|. .++... .....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~--- 78 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV--- 78 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH---
Confidence 45555555555 678999999999999999999886432 11122 222211 11121
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhh
Q 000354 208 RREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVL 280 (1622)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~ 280 (1622)
+.+..+.+.+. .+.+-++|+||++.. +.++.+...+......+.+|++|++. .+.
T Consensus 79 ------------------~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 79 ------------------DQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred ------------------HHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 22222222221 256778999998765 34566655555444566677777654 222
Q ss_pred hhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH
Q 000354 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
.........+++.+++.++..+.+.+. | . ..+.+..|++.++|.|.
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCcc
Confidence 211223468999999999998888876 3 1 14568899999999885
No 85
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=6.1e-06 Score=71.77 Aligned_cols=58 Identities=40% Similarity=0.615 Sum_probs=36.7
Q ss_pred CCCEEEccCCCCcccch-hhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCc
Q 000354 581 NLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1622)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1622)
+|++|++++|.++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666653 45666666666666655 666666656666666666666654
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.93 E-value=7.5e-05 Score=96.76 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=100.2
Q ss_pred CccccccHHHHHH---HHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 137 GHEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 137 ~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
....|+|++..+. .+...+..+....+.|+|++|+||||+|+.+++... ..|. .++... ....++ ++
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r~--- 95 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-RA--- 95 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-HH---
Confidence 3456788888774 455666667777889999999999999999998764 2331 111110 011111 11
Q ss_pred HhCCCCCCCChHHHHHHHHHHHH-hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE--EcCcch--hhhhcCcc
Q 000354 214 QLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHC 286 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv--TTR~~~--v~~~~~~~ 286 (1622)
.+....+.+. .+++.+||+|||+.. ..++.+...+. .|+.++| ||++.. +.......
T Consensus 96 -------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 96 -------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred -------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc
Confidence 1111111121 146789999999754 45555543332 3555555 344431 21211222
Q ss_pred cceEEeccCCHHHHHHHHHHHhCC------CCCCchhHHHHHHHHHHhCCChH
Q 000354 287 QNNYCVSVLNKEEAWSLFSKVVGN------CVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 287 ~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
...+.+++++.++...++.+.+.+ .....-.++....|++.+.|..-
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 457999999999999999887631 11112224566788888888643
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=8.5e-05 Score=94.17 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=112.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH-
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ- 214 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~- 214 (1622)
....++|.+..++.|...+..+++. .+.++|..|+||||+|+.+++...-...+.. ..+..-..-+.|...
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcCC
Confidence 4557889999999999888766553 5689999999999999999887642111100 000000111111100
Q ss_pred ----hCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhc
Q 000354 215 ----LGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSE 283 (1622)
Q Consensus 215 ----l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~ 283 (1622)
+..+.......+.+..+.+.+. .+++-++|+|++... ...+.+...+.......++|++|.+. .+...-
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0000000112223333333322 367789999999765 45566555444444455666555544 333211
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
......+.+.+++.++....+.+.+..... ...+.....|++.++|.+-.+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223568999999999999999887632111 112345678999999988644443
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00021 Score=86.39 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHHHcCCC----------eEEEEEEeCCCccHHHHHHHHHHHhhcc-------------------CC
Q 000354 139 EFIESRESILNDILDALRGPY----------VYMIGVYGMAGIGKTTLVKEVARLAKEG-------------------RI 189 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~ 189 (1622)
..++|.+..++.|...+..+. ...+.++|+.|+|||++|+.+++..--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999998887542 4678899999999999999998865311 11
Q ss_pred cceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCC
Q 000354 190 FDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGD 263 (1622)
Q Consensus 190 F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 263 (1622)
.| +.++..... ....+.+..+.+... .+++-++|+|+++.. ...+.+...+..
T Consensus 85 pD-~~~i~~~~~--------------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PD-VRVVAPEGL--------------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CC-EEEeccccc--------------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11 112211100 011222333333332 246668888999875 334445444444
Q ss_pred CCCCcEEEEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 264 VHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 264 ~~~gskIlvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
...+..+|++|.+. .+...-......+.+.+++.++..+.+.+..+. ..+.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 44566666666654 333221233568999999999999888754331 1345778999999999754433
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00016 Score=89.08 Aligned_cols=180 Identities=10% Similarity=0.108 Sum_probs=112.2
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhcc-------------------CCcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 196 (1622)
...+++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+++...-. ..+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3556889999888888888766654 79999999999999999998754210 111223444
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+.+....+.++. +|.+..... -. .+++-++|+|++... ...+.+...+....+.+++|++|
T Consensus 91 daas~~~vddIR-~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 444443333322 222221100 00 256778999999765 34566655555444566666655
Q ss_pred C-cchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 275 R-RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 275 R-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
. ...+...-......+++.+++.++....+.+.+..... .-.++....|++.++|.+-.
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 4 33443322334567899999999999999888743221 11234567889999887753
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=1e-05 Score=70.38 Aligned_cols=56 Identities=34% Similarity=0.562 Sum_probs=21.2
Q ss_pred ccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccC-ccCCCCCCCcEEEccCC
Q 000354 512 LTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQC 568 (1622)
Q Consensus 512 Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~ 568 (1622)
|++|++++|.+ ..+|...|.++++|++|++++|.+..++ ..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33444443332 2333333344444444444444443332 12333333333333333
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00072 Score=88.95 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=109.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCC----------------------cceE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI----------------------FDEV 193 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~----------------------F~~~ 193 (1622)
....++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+++...-... +| +
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 3456889999999999998866654 6789999999999999999987741111 11 2
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCC
Q 000354 194 VFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRG 267 (1622)
Q Consensus 194 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 267 (1622)
++++-..... .+.++.+.+.+ ..+++-++|||+++.. ..++.|...+......
T Consensus 92 ~eidaas~~~---------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 92 TEIDAASHGG---------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred EEecccccCC---------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 2232222112 22222222221 1256678999999876 4556665555544456
Q ss_pred cEEEEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 268 CKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 268 skIlvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
+.+|++|.+. .+..........|++..++.++-.+.+.+.+...... ...+....|++.++|.+..
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 6666655433 3333222335689999999999988888876321111 1234567889999998743
No 92
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.89 E-value=0.00021 Score=77.42 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=91.1
Q ss_pred CCccccccHHHHHHHHHHHHc-----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 136 EGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.....|+|.+..++.+.-++. .+...-+.+||++|+||||||..+++..... |. +++...-....++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl--- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL--- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH---
Confidence 345679999988877654443 3457789999999999999999999988733 32 2322111111111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hh-------hhhccCCC-CCCC-----------CCcE
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LD-------LERTGIPF-GDVH-----------RGCK 269 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~-------~~~l~~~l-~~~~-----------~gsk 269 (1622)
..+...+ +++-+|++|++-.. .+ .++....+ -..+ +=+-
T Consensus 93 ------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 93 ------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1111122 24456666777543 11 11111000 0011 1233
Q ss_pred EEEEcCcchhhhhcCcc--cceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 270 ILVTSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 270 IlvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
|=-|||.-.+... +.. ....+++..+.+|-.++..+.++.-. -.-.++.+.+|++++.|-|--..-+
T Consensus 153 igATTr~g~ls~p-LrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 153 IGATTRAGLLSSP-LRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEEESSGCCTSHC-CCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eeeeccccccchh-HHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 5558887665542 332 23458999999999999988774321 2233567899999999999654433
No 93
>PRK08727 hypothetical protein; Validated
Probab=97.89 E-value=0.00012 Score=82.83 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHH
Q 000354 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSE 226 (1622)
Q Consensus 147 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~ 226 (1622)
.+..+..+..+.....+.|+|..|+|||+||+++++..... ...++|+++.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 34444444333333569999999999999999999886533 23566775322 11111
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCChh---hhhh-ccCCCCC-CCCCcEEEEEcCcch---------hhhhcCcccceEEe
Q 000354 227 RIMMLCNRLKREKKILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCV 292 (1622)
Q Consensus 227 ~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gskIlvTTR~~~---------v~~~~~~~~~~~~l 292 (1622)
....+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++... +.. .+.....+++
T Consensus 85 --~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~~~l 159 (233)
T PRK08727 85 --RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIRIGL 159 (233)
T ss_pred --HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCceEEe
Confidence 1112223 245699999987542 2322 2211111 124566999998531 111 2334568999
Q ss_pred ccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 293 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
++++.++-.+++++++.... -.-.+++..-|++.++|-.-.+
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999998773211 1222456778888887665444
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00023 Score=84.98 Aligned_cols=198 Identities=14% Similarity=0.048 Sum_probs=116.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC--CcceEEEEEecCCcCHHHHHHHHH
Q 000354 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR--IFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
.....++|.+...+.+...+..++. ..+.|+|+.|+||||+|..+++..--.. .+.... ...........+.|.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIA 96 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHH
Confidence 3455688999999999999886654 4689999999999999999998774211 011110 000111111222222
Q ss_pred HHhC-------CCCC-------CCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE
Q 000354 213 DQLG-------LNFC-------EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1622)
Q Consensus 213 ~~l~-------~~~~-------~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv 272 (1622)
..-. ...+ ..-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.....+..+|+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2110 0000 1112344555555554 257789999999865 334444444433334455444
Q ss_pred Ec-CcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 273 TS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 273 TT-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
+| +...+..........+++.+++.++..+++.+.... .. -..+....|++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 433333222223468999999999999999884321 11 113457789999999998655443
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00012 Score=92.21 Aligned_cols=178 Identities=11% Similarity=0.137 Sum_probs=108.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCC-------------------cceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 196 (1622)
....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++...-... |--++.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 456789999999999999886554 57899999999999999999886531111 1111222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HhcCcEEEEEcCCCChh--hhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gskI 270 (1622)
+......+ +.++.+.... ..+++-++|+|++.... ..+.+...+......+++
T Consensus 94 daAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 94 DAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred eccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 22222222 2222222221 12567799999997653 344444444333345667
Q ss_pred EEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 271 LVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 271 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
|++|.+. .+.....+....+.+.+++.++....+.+.+..... .-..+....|++.++|.+.-+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHH
Confidence 7666544 332211233456788899999999999887742211 1123567889999998884433
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=2.9e-07 Score=110.83 Aligned_cols=177 Identities=22% Similarity=0.216 Sum_probs=127.0
Q ss_pred cccccEEEecccCCCCCCCCCC-CCCccEEEccCCC---------CCCCCChhhhcCCCCccEEEecCCcCcccCccCCC
Q 000354 487 LKNCIAIFLHDINTGELPEGLE-YPHLTSLCMNPKD---------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH 556 (1622)
Q Consensus 487 ~~~lr~Lsl~~~~~~~lp~~~~-~~~Lr~L~L~~n~---------~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~ 556 (1622)
.+.+|+|-+.++++..+-.... -..|+.|..+..- ..+.+.... ....|.+-++++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 4578888888877665322211 1233333322110 001111111 134678888999998888888888
Q ss_pred CCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchh-hhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEc
Q 000354 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1622)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l 635 (1622)
+++|+.|||++|++.....+..|.+|.+|||++|.+..+|.- .... +|+.|++++|. ++.+-. +.+|.+|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 999999999999999999999999999999999999988853 2333 49999999987 887765 899999999999
Q ss_pred cCCccccccccccccccccChhhhCCCCCCCEEEEeecCCCCCC
Q 000354 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1622)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1622)
+.|-+. +...+..|..|..|+.|.+.+|.+-.-|
T Consensus 262 syNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 262 SYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 998776 2334566777788899999988765433
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00016 Score=90.40 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=110.2
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|++..++.+...+..+.+ +.+.++|+.|+||||+|+.+++...-.. |.... .+..-...+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 455688999999999998875543 5788999999999999999998764211 11100 000001111111110
Q ss_pred CCCC-----CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCc-chhhhhc
Q 000354 216 GLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSE 283 (1622)
Q Consensus 216 ~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~-~~v~~~~ 283 (1622)
..+. ......+.++.+..... .+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+...-
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000 00011222233322221 135557999998764 4566665544443445656555543 3332211
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVAR 340 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~ig~ 340 (1622)
......+++.+++.++....+.+.+..... .-..+.+..+++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223568899999999999998887732111 1113457788999999664 4444444
No 98
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00037 Score=83.68 Aligned_cols=194 Identities=14% Similarity=0.027 Sum_probs=114.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcceE------EEEEecCCcCHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEV------VFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~------~wv~vs~~~~~~~i~~ 209 (1622)
....++|.+...+.|.+.+..++.. .+.++|+.|+||+|+|..+++..--....... .=..+.... ..-+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 3456889999999999998876654 68999999999999999999876421110000 000000000 0111
Q ss_pred HHHHHhCCC---------C-----CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcE
Q 000354 210 EIADQLGLN---------F-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK 269 (1622)
Q Consensus 210 ~i~~~l~~~---------~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gsk 269 (1622)
.|...-..+ . ...-..+.+..+.+.+. .+++.++|+||++.. ...+.+...+.....++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 111000000 0 01112344555554443 257779999998765 345555544444345666
Q ss_pred EEEEcCcch-hhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 270 ILVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 270 IlvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
+|++|.+.. +..........+.+.+++.++..+++.+..+... +.....+++.++|.|.....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 777776653 3221233456899999999999999988653211 122267899999999865544
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00013 Score=91.29 Aligned_cols=182 Identities=12% Similarity=0.154 Sum_probs=110.9
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccC-------------------CcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 196 (1622)
....++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++..--.. .|.-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 4556889999999999999866554 578999999999999999998764211 11123334
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+......+.++ +++++.+... -..++.-++|+|+|... ...+.+...+......+++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 33333333332 2232222111 01256778999999875 45555555554444567666655
Q ss_pred Ccc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 275 RRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 275 R~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
.+. .+...-......+++.+++.++-...+.+.+...... -..+....|++.++|.+.-+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHH
Confidence 443 3332112234578899999998888777766322111 113456778888988875433
No 100
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.86 E-value=3.5e-05 Score=84.27 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHHc---CCCeEEEEEEeCCCccHHHHHHHHHHHhhcc
Q 000354 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 187 (1622)
|+||+++++++...+. ....+.+.|+|.+|+|||+|+++++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999993 4567899999999999999999999988755
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.85 E-value=0.00017 Score=81.84 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000354 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1622)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 225 (1622)
..+..+.++......+.+.|+|+.|+|||+||+.+++..... -..+.++++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 345555555544455689999999999999999999876532 23566776543110
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCCCh---hhhhhcc-CCCCC-CCCC-cEEEEEcCcch---------hhhhcCcccceE
Q 000354 226 ERIMMLCNRLKREKKILVILDDIWTS---LDLERTG-IPFGD-VHRG-CKILVTSRRRD---------VLVSEMHCQNNY 290 (1622)
Q Consensus 226 ~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-skIlvTTR~~~---------v~~~~~~~~~~~ 290 (1622)
....+.+.+. +.-+||+||+... ..|+... ..+.. ...| .++|+||+... +.. .+....++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS-RLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH-HHhCCcee
Confidence 0011122221 2248899999654 3443221 11211 1123 47999998552 222 35556789
Q ss_pred EeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 291 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
++.++++++-.+++++++... .-.-.+++..-|++.+.|..-++..+-
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999999998866321 122235677788888887765544443
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00043 Score=87.44 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=110.7
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC-------------------CcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 196 (1622)
....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...-.. .|.-++++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 345688999999999988886555 4568999999999999999998763211 11122233
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+.+....+ +.+..+..... .+++-++|+|+++.. ...+.+...+......+.+
T Consensus 94 ~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 94 DAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22222222 22222222221 256779999999865 3455555555444455666
Q ss_pred EEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHHHH
Q 000354 271 LVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVAR 340 (1622)
Q Consensus 271 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~ig~ 340 (1622)
|++|.+. .+...-......+++.+++.++-...+.+.+..... ...++....|++.++|.+- |+..+-.
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6655443 332211222457899999999999888877632111 1123456788999999775 4444433
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.82 E-value=0.00047 Score=84.08 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=110.7
Q ss_pred ccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhcc--------------------CCcceEEEE
Q 000354 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVFA 196 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv 196 (1622)
...++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++....-. .+++ ++++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 44678999999999998876554 477899999999999999999876411 1222 2333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+-........ .+++...+... .. .+++-++|+|+++.. ...+.+...+......+.+|++|
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 2221112111 12222221100 00 145668999998765 34555554454434566667776
Q ss_pred Ccch-hhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 275 RRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 275 R~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
.+.. +..........+++.+++.++..+.+..++..... .-..+.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 5543 22211223457889999999999998887732111 1123567888999999886555443
No 104
>PF14516 AAA_35: AAA-like domain
Probab=97.81 E-value=0.0017 Score=77.51 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=120.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC-----cCHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-----PDLKRIRREI 211 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i 211 (1622)
+...++.|...-+++.+.|.+.+ ..+.|.|+-.+|||+|...+.+..+.. .|. ++++++..- .+..+.++.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 34457889877777887776533 489999999999999999999888743 343 457777642 2455445444
Q ss_pred ----HHHhCCCCCC--------CChHHHHHHHHHHHHh--cCcEEEEEcCCCChhh---h-hhccCCC----CC----CC
Q 000354 212 ----ADQLGLNFCE--------ESDSERIMMLCNRLKR--EKKILVILDDIWTSLD---L-ERTGIPF----GD----VH 265 (1622)
Q Consensus 212 ----~~~l~~~~~~--------~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~---~-~~l~~~l----~~----~~ 265 (1622)
.++++.+..- .+.......+.+.+.. +++.+|++|+|+..-. + +++...+ .. ..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4455443210 1112222223333332 5899999999976521 1 1111111 00 00
Q ss_pred CCcE--EEEEc-Ccchhhh---hcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 266 RGCK--ILVTS-RRRDVLV---SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 266 ~gsk--IlvTT-R~~~v~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
...- |++.+ +.....+ ........++|++++.+|...|..++-.. .. .+..++|...+||+|..+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHH
Confidence 1111 22221 1111111 12344567999999999999999876322 11 2238899999999999999999
Q ss_pred HHhcCC
Q 000354 340 RTLRNK 345 (1622)
Q Consensus 340 ~~L~~~ 345 (1622)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999764
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00026 Score=89.06 Aligned_cols=184 Identities=12% Similarity=0.098 Sum_probs=112.6
Q ss_pred CccccccHHHHHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhccCCcc-------------------eEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-------------------EVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-------------------~~~wv 196 (1622)
....++|.+..++.|...+..++ ...+.++|+.|+||||+|+.+++..--....+ -++++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 34567898888888888887655 46788999999999999999998764211110 02233
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+......+ +.++.+.+.+. .+++-+||+|++... +.++.+...+........+
T Consensus 94 d~a~~~~I---------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 94 DGASNRGI---------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred ecccccCH---------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 22111111 22222222221 256779999999765 4455565555433345556
Q ss_pred EEEcCc-chhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 000354 271 LVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTVARTL 342 (1622)
Q Consensus 271 lvTTR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~ig~~L 342 (1622)
|++|.+ ..+..........+++.+++.++....+.+.+..... .-..+.+..|++..+|.. .|+..+..++
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665554 3333211223457899999999999888886632111 112456778899999854 6777766554
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00018 Score=88.26 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=112.7
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEE-ecCCcCHHHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIADQ 214 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~ 214 (1622)
....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-...++..-|.. +......=..-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3456889999999999988876664 588999999999999999998774221111111110 00000000000111100
Q ss_pred hCCC-----CCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhhhh
Q 000354 215 LGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVS 282 (1622)
Q Consensus 215 l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~~ 282 (1622)
...+ .......+.+..+.+.+. .+++-++|+|++... ..++.+...+....+.+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 001111233334444442 246778999998765 45666666555544566666655 43333321
Q ss_pred cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 283 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
.......+++.+++.++....+...+.... ..-..+.+..|++.++|.+--+.
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 112245788999999999888888763211 11224567889999999775433
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.79 E-value=0.0003 Score=85.68 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=101.6
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
....+.|+++.+++|.+.+. . ...+-|.++|++|+|||++|+++++.... .| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch---
Confidence 44567899999988887763 1 12456899999999999999999987752 22 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh----------------hhhhccCCCC--CCC
Q 000354 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFG--DVH 265 (1622)
Q Consensus 204 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 265 (1622)
..+.... ++ .....+..+.+........+|++||++... .+..+...+. ...
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 11 111223333333334567899999987541 1111211111 113
Q ss_pred CCcEEEEEcCcchhhhhc----CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 266 RGCKILVTSRRRDVLVSE----MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 266 ~gskIlvTTR~~~v~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
.+.+||.||......... ...+..+.+...+.++..++|+.++.......+. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 467788888755433221 1234578999999999999999887432211111 1356777776654
No 108
>PRK09087 hypothetical protein; Validated
Probab=97.77 E-value=0.00029 Score=79.05 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=87.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
..+.+.|||..|+|||+|++.++..... .+++.. ....++ ...+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~--------------------~~~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA--------------------ANAAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH--------------------HHhhh--
Confidence 3467999999999999999998876431 244221 111111 11111
Q ss_pred CcEEEEEcCCCChh-hhhhccCCCCC-CCCCcEEEEEcCc---------chhhhhcCcccceEEeccCCHHHHHHHHHHH
Q 000354 239 KKILVILDDIWTSL-DLERTGIPFGD-VHRGCKILVTSRR---------RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKV 307 (1622)
Q Consensus 239 kr~LlVlDdv~~~~-~~~~l~~~l~~-~~~gskIlvTTR~---------~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 307 (1622)
.-+|++||+.... +-+.+...+.. ...|..||+|++. .++.. .+....++++++++.++-.++++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHH
Confidence 1378889996431 11112111111 1246679998873 22333 3556678999999999999999998
Q ss_pred hCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 308 VGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 308 ~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
+.... -.--+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQ-LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 84321 12225677788888888776665433
No 109
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.73 E-value=0.00011 Score=86.88 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=63.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChH---HHHHH---H
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDS---ERIMM---L 231 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~---~~~~~---l 231 (1622)
-..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-...-+.+.. ..... .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3578999999999999999999998754 8999999999876 789999999854332211111111 11111 1
Q ss_pred HHHH-HhcCcEEEEEcCCCCh
Q 000354 232 CNRL-KREKKILVILDDIWTS 251 (1622)
Q Consensus 232 ~~~l-~~~kr~LlVlDdv~~~ 251 (1622)
.+++ .++++++|++|++-..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3489999999999654
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.0012 Score=77.55 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=120.7
Q ss_pred CccccccHHHHHHHHHHHHc----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
.+..+.||+.+++.+..++. ....+.+.|.|-+|.|||.+...++.+......=-.+++++...-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 35568899999999998876 34567899999999999999999998876322223457777766667788888888
Q ss_pred HHhCCC-CCCCChHHHHHHHHHHHHhcC-cEEEEEcCCCChh--hhhhccCCCCC-CCCCcEEEEEcCcc--hhhhh---
Q 000354 213 DQLGLN-FCEESDSERIMMLCNRLKREK-KILVILDDIWTSL--DLERTGIPFGD-VHRGCKILVTSRRR--DVLVS--- 282 (1622)
Q Consensus 213 ~~l~~~-~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~--~~~~l~~~l~~-~~~gskIlvTTR~~--~v~~~--- 282 (1622)
..+-.. .......+....+.++..+.+ -+|+|+|.++... .-..+...|.+ --+++|+|+.---. +..++
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 777211 111222444555566666555 6899999987652 11112222221 23566665543211 11111
Q ss_pred -----cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 283 -----EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 283 -----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
.--....+.-+|.+.++-.++|..+..............+.+|+++.|.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 0112346788899999999999998854333333333444455555443
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00051 Score=87.37 Aligned_cols=198 Identities=11% Similarity=0.117 Sum_probs=114.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcc--eEEEEEecCCcCHHHHHHHHH
Q 000354 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
.....++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+++...-..... ...+-..... ..-+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHh
Confidence 34567899999999999998866544 788999999999999999998764211110 0000000000 0001111
Q ss_pred HHhCCCC-----CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhh
Q 000354 213 DQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1622)
Q Consensus 213 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~ 280 (1622)
..-..+. ......+.+..+.+.+. .+++-++|+|++... ...+.+...+......+++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1110000 01122333344443332 246678999998765 34555655554444566666555 444443
Q ss_pred hhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.........+++..++.++....+.+.+..... .-..+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 322223568899999999999999887742211 112356778899999988655443
No 112
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00072 Score=86.74 Aligned_cols=179 Identities=12% Similarity=0.139 Sum_probs=111.0
Q ss_pred ccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhh---------------------ccCCcceEEE
Q 000354 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK---------------------EGRIFDEVVF 195 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~w 195 (1622)
...++|.+...+.|...+..+.. ..+.++|+.|+||||+|+.++.... ...+|+ ++.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 45688999999999999986655 4588999999999999999988763 112333 223
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEE
Q 000354 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1622)
Q Consensus 196 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvT 273 (1622)
++..+...+.++. +++..+.... ..+++-++|+|++... ..++.+...+......+.+|++
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3333222222222 2222211100 0246678999998765 4566666555544456666554
Q ss_pred c-CcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 274 S-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 274 T-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
| +...+...-......+++.+++.++....+.+.+....- ....+.+..|++.++|-.--+
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 4 444444322334568999999999999999887732211 112345788999999866433
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=4.7e-06 Score=103.41 Aligned_cols=104 Identities=27% Similarity=0.371 Sum_probs=54.6
Q ss_pred CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCccccCCCCCCCEEEc
Q 000354 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSL 587 (1622)
Q Consensus 508 ~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 587 (1622)
.+.+|..|++..|.+. .+... +..+.+|++|++++|.|..+. .+..+..|+.|++.+|.|..+..+..+.+|+.|++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 4455555555555442 22211 244555566666665555552 24455555566666665555555555555666666
Q ss_pred cCCCCcccchh-hhcCCCCCEEEccCCC
Q 000354 588 CCSDIEQLPRE-IGELTQLKLLDLSNCS 614 (1622)
Q Consensus 588 s~~~i~~LP~~-i~~L~~L~~L~L~~~~ 614 (1622)
++|.+..++.. ...+.+|+.+++.+|.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555555432 3455555555555544
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00063 Score=86.68 Aligned_cols=201 Identities=15% Similarity=0.131 Sum_probs=111.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEE-ecCCcCHHHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIADQ 214 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~ 214 (1622)
....++|.+..+..|...+..+.+ ..+.++|+.|+||||+|+.+++...-...++...|.. +......-..-+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 355688999999999888876665 4588999999999999999998774322111111110 00000000001111100
Q ss_pred hCCC-----CCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhhhh
Q 000354 215 LGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVS 282 (1622)
Q Consensus 215 l~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~~ 282 (1622)
-..+ .......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 001112334444444442 256778999998765 34555555554444455555544 43333321
Q ss_pred cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHH
Q 000354 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1622)
Q Consensus 283 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~i 338 (1622)
.......+++.+++.++....+.+.+.... ..-..+.+..|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 233456899999999998888887663211 11124567889999999554 44433
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00043 Score=91.76 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=93.2
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCC---c-ceEEEEEecCCcCHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
....++||+++++++++.|......-+.++|++|+|||++|+.++++...... + +..+|. + +...+..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a--- 251 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA--- 251 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh---
Confidence 34568999999999999998665666789999999999999999998743211 1 334442 1 1111110
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh----------hhhhccCCCCCCCCCc-EEEEEcCcchh--
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGC-KILVTSRRRDV-- 279 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs-kIlvTTR~~~v-- 279 (1622)
...........+..+.+.+.+.++.+|++|++.... +...+..+.. ..|. ++|-+|...+.
T Consensus 252 ----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 ----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHHH
Confidence 000011223445555555554568999999986431 1122222221 1232 44444443221
Q ss_pred --h-hh-cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 280 --L-VS-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 280 --~-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
. +. .......+.+++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 00 11224579999999999999998655
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00029 Score=78.43 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=119.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEE-EEEecCCcCHHHHHHHHHH
Q 000354 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV-FAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~~i~~ 213 (1622)
++....+.|.+..+.-|...+.+....+...+|++|.|||+-|+.++...--.+.|.+.+ -.|+|+.....-+-..+-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik- 110 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK- 110 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc-
Confidence 344567889999998888888877778999999999999999999998876556676544 456665544331111110
Q ss_pred HhCCCCCCCChHHHHHHHHHHHH-----hcCc-EEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcchhhhh-cC
Q 000354 214 QLGLNFCEESDSERIMMLCNRLK-----REKK-ILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EM 284 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~-----~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-~~ 284 (1622)
....+.-... .-+. -.||||+++.. +.|.++..........++.|+.+-....... ..
T Consensus 111 -------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 111 -------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0000000000 0133 57889999876 7898887766665566776665554433221 12
Q ss_pred cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
.....++-++|.+++...-++..+..+.-.- ..+..+.|++.++|---
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcHH
Confidence 2345688999999999999999884322111 13457789999988543
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.7e-06 Score=94.27 Aligned_cols=112 Identities=19% Similarity=0.079 Sum_probs=64.0
Q ss_pred cCceeEEecCcccccccccCCCccccccccEEEEeeCCCCCccHHHHhhcCccceEEEE-ccceeEEeccchhhhccccc
Q 000354 1072 SHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKL 1150 (1622)
Q Consensus 1072 ~~L~~L~L~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~l~~~~~~~l~~l~sL~~L~I~-c~~l~~i~~~~~~~~~~~~l 1150 (1622)
+.|+.||++...++.-.-. .-...|.+|+.|.|.+..+++-....+..-.+|+.|+|+ |+++++... ..-...+
T Consensus 185 sRlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~----~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL----QLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH----HHHHHhh
Confidence 3588888888655422111 111236778888888888766666666666778888887 777765421 1123356
Q ss_pred cccceeecccccccchhhccCccccccccccceeEeeccC
Q 000354 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCD 1190 (1622)
Q Consensus 1151 ~sL~~L~i~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~ 1190 (1622)
+.|.+|+|+.|...+..-. .-..+--+.|+.|+|+||.
T Consensus 260 s~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYR 297 (419)
T ss_pred hhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhH
Confidence 7777777777755443310 0011123455555555554
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00091 Score=86.12 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=111.5
Q ss_pred ccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000354 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
...++|.+..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...-...... ...++.-...+.|.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCCC
Confidence 45688999999999888876554 46789999999999999999987642111000 000111111222221111
Q ss_pred CCC-----CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcC
Q 000354 217 LNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEM 284 (1622)
Q Consensus 217 ~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~ 284 (1622)
.+. ......+.+..+.+.+. .+++-++|+|++... +..+.+...+......+.+|++|.+. .+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 110 01112223333333322 146779999998755 44555555444444566666666443 3322112
Q ss_pred cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.....+.+..++.++....+.+.+...... -..+.+..|++.++|.+..+...
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234578899999999998888877432111 12356788999999988654443
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=3.5e-06 Score=101.85 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=82.0
Q ss_pred CCcEEEccCCCCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCccccCCCCCCCEEEccC
Q 000354 559 NLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1622)
Q Consensus 559 ~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~ 637 (1622)
.|.+-+.++|.+..+ .++.-|+.|+.|||++|++...- .+..|.+|+||||++|. +..+|.-....+. |+.|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 466777788888777 78888999999999999988765 78899999999999987 8888874333444 99999998
Q ss_pred CccccccccccccccccChhhhCCCCCCCEEEEeecCCC
Q 000354 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1622)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1622)
|.++ .+.++.+|.+|+.|+++.|-+.
T Consensus 242 N~l~-------------tL~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALT-------------TLRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cHHH-------------hhhhHHhhhhhhccchhHhhhh
Confidence 8765 4567888888999988876544
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.00092 Score=82.89 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=103.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
.-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+... .+....+.+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 4589999999999999999999765332223455554 345666666655421 012233333332 45
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCcEEEEEcCcch---------hhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gskIlvTTR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
-+||+||+.... .+ +.+...+.. ...|..||+|+.... +.. .+...-++.+++++.++-.+++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHH
Confidence 589999996542 22 223222221 123456888876431 222 244556788999999999999999
Q ss_pred HhCCCCC-CchhHHHHHHHHHHhCCChHHHHHHHHH
Q 000354 307 VVGNCVE-DPDLQTVAIQVANECGGLPIAILTVART 341 (1622)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~I~~~c~glPLai~~ig~~ 341 (1622)
++..... ..-.+++..-|++.++|.|-.+.-+...
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8843211 1233678889999999999777665543
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00087 Score=84.80 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=112.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCCcc---------------------eEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFD---------------------EVV 194 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---------------------~~~ 194 (1622)
....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-....+ -++
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 3556889999999999998876654 578999999999999999998764111100 112
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCc
Q 000354 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGC 268 (1622)
Q Consensus 195 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 268 (1622)
.++.+... ..+.++.+.+... .+++-++|+|++... ...+.+...+.......
T Consensus 91 eidaas~~---------------------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 91 ELDAASHG---------------------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred Eecccccc---------------------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 22221111 1222333322221 256679999998765 45555555554444456
Q ss_pred EEEEEc-CcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHHHHHh
Q 000354 269 KILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVARTL 342 (1622)
Q Consensus 269 kIlvTT-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~ig~~L 342 (1622)
.+|++| ....+...-......+++.+++.++..+.+.+.+..... .-..+....|++..+|-+- |+..+-.++
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555544 444433321223568999999999998888877632111 1113456778899999774 444444443
No 122
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.8e-06 Score=94.11 Aligned_cols=188 Identities=19% Similarity=0.127 Sum_probs=130.5
Q ss_pred ccccEEEEeeCCCCCc-cHHHHhhcCccceEEEEccceeEEeccchhhhccccccccceeecccccccchhhccCccccc
Q 000354 1098 QNLKILEVVNDKSDNF-PICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDS 1176 (1622)
Q Consensus 1098 ~~L~~L~L~~c~l~~~-~~~~l~~l~sL~~L~I~c~~l~~i~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~~~ 1176 (1622)
+.|+.|++++..++.. ....+..|..|+.|.|....+.+-.. .....-..|+.|+|+.|.+++.... .-.+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-----~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-----NTIAKNSNLVRLNLSMCSGFTENAL--QLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-----HHHhccccceeeccccccccchhHH--HHHHH
Confidence 4599999999885543 34667889999999998766654322 2234567899999999999987522 22345
Q ss_pred cccccceeEeeccCCccccCCC--CCccCCccEEEEeccCC-CccccchhhhhhcccccEEEEecccccccccccccccc
Q 000354 1177 VVENLEMLEVWWCDNLVNLVPS--SPSFRNLITLEVWYCKG-LKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVA 1253 (1622)
Q Consensus 1177 ~l~sL~~L~i~~C~~L~~l~~~--~~~l~sL~~L~I~~C~~-L~~l~~~~~~~~L~sL~~L~I~~C~~l~~~~~~~~~~~ 1253 (1622)
+++.|.+|+|+.|.-.+..... ..--+.|+.|+|++|.+ +..-........+++|.+|++++|-.++.-. -
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~------~ 331 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC------F 331 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH------H
Confidence 7899999999999755332111 12235799999999973 2222235567889999999999998876522 1
Q ss_pred ccccccccccccccccccccccccCCCccccCCCcceEEeccCccc
Q 000354 1254 EDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNM 1299 (1622)
Q Consensus 1254 ~~~~~~~sL~~L~l~~c~~L~sl~~~~~~~~l~sL~~L~I~~Cp~L 1299 (1622)
.....|+.|++|.++.|..+---..-. .-.-|+|.+|+|.+|-.=
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccCc
Confidence 234468999999999997652110000 115689999999998643
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0011 Score=84.80 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=109.4
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCC-cc---------------eEEEEEec
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-FD---------------EVVFAEVS 199 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~---------------~~~wv~vs 199 (1622)
....++|.+..++.|..++..+++ +.+.++|+.|+||||+|+.+++..--... .. -++++...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 355688999999999999876554 46789999999999999999876531110 00 01111111
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE-
Q 000354 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV- 272 (1622)
Q Consensus 200 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv- 272 (1622)
.. ...+.++.+.+.+. .+++-++|+|++... ..+.++...+......+.+|+
T Consensus 96 sn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 96 SN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred cc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 00 11233344443332 256779999998765 456666555544334555554
Q ss_pred EcCcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHHH
Q 000354 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVA 339 (1622)
Q Consensus 273 TTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~ig 339 (1622)
||+...+...-......+++.+++.++....+...+..... ....+.+..|++.++|-+- |+..+-
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44444443322233468999999999999888876632111 1113457789999988764 444333
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.61 E-value=0.00064 Score=83.08 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=99.7
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++.... . |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh---
Confidence 34567799998888887653 1 23457899999999999999999987652 1 232221
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh------------h-hhh---ccCCCCC--CC
Q 000354 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D-LER---TGIPFGD--VH 265 (1622)
Q Consensus 204 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~-~~~---l~~~l~~--~~ 265 (1622)
.++.... .+ .....+..+.+........+|++||++... . ... +...+.. ..
T Consensus 199 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111110 11 112233334444444567899999997541 1 111 1111111 12
Q ss_pred CCcEEEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 266 ~gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
.+..||.||...+.....+ ..+..+.++..+.++-.++|+.++.......+. ....+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 3566777887654333211 124579999999999999999887432211111 134566666664
No 125
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0013 Score=80.48 Aligned_cols=179 Identities=12% Similarity=0.144 Sum_probs=103.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhcc------CCcce-EEEEEecCCcCHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------RIFDE-VVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~i~ 208 (1622)
....++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++..... ..|.. ++-++.....+...+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i- 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI- 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-
Confidence 345678999999999999886554 588899999999999999998876421 11221 111111111111111
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-CcchhhhhcCc
Q 000354 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSEMH 285 (1622)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~~~~~ 285 (1622)
+++.+.+... .. .+++-++|+|+++.. ..++.+...+......+.+|++| ....+......
T Consensus 94 ~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1222211100 00 145668999998754 33555544333333445555555 33333221122
Q ss_pred ccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH
Q 000354 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 286 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
....++..+++.++....+...+....- .-..+....|++.++|-+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHH
Confidence 3457899999999999888877632111 1123567788888988654
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.00051 Score=82.22 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=86.9
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.... .+..++.+. ..... .++.+..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~-i~~~l~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDF-VRNRLTRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHH-HHHHHHHH
Confidence 455688999999999999876554 56777999999999999999887531 133444444 22211 11111111
Q ss_pred CCCCCCCChHHHHHHHHHHHH-hcCcEEEEEcCCCCh---hhhhhccCCCCCCCCCcEEEEEcCcchhhhh-cCcccceE
Q 000354 216 GLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQNNY 290 (1622)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-~~~~~~~~ 290 (1622)
..... .+.+-+||+||++.. +....+...+.....++++|+||........ -......+
T Consensus 92 ----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 92 ----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred ----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 01110 135668999999765 1222232223333457788888865432211 11223467
Q ss_pred EeccCCHHHHHHHHHH
Q 000354 291 CVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 291 ~l~~L~~~ea~~Lf~~ 306 (1622)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777888887776654
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0013 Score=81.67 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=107.6
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC---------------------CcceEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR---------------------IFDEVV 194 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~ 194 (1622)
....++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++...-.. +++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 345688999999999999886655 5688999999999999999998764211 111 11
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCc
Q 000354 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGC 268 (1622)
Q Consensus 195 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 268 (1622)
++.-....... .+..+.+.+. .+++-++|+|+++.. +..+.+...+......+
T Consensus 94 ~i~g~~~~gid---------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 94 EIDGASHRGIE---------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred EeeccccCCHH---------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 22111111111 1222222111 257778999998755 34444544444434466
Q ss_pred EEEEEcCc-chhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH-HHHHH
Q 000354 269 KILVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1622)
Q Consensus 269 kIlvTTR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~i 338 (1622)
.+|++|.. ..+...-......+++.++++++....+.+.+.... -.-..+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666543 333221122355789999999999888887763211 11124567889999999664 44433
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0012 Score=82.22 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=110.1
Q ss_pred CccccccHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCC------------------cc-eEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FD-EVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~------------------F~-~~~wv 196 (1622)
....++|.+...+.|...+..++.. ++.++|+.|+||||+|+.+++..--... +. -++++
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3456889999999999988766554 6689999999999999999887631110 11 12222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+......+.. +..+.+... .+++-++|+|++... +..+.+...+......+++
T Consensus 92 daas~~gId~---------------------IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 92 DAASNRGIDD---------------------IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ccccccCHHH---------------------HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 2222112222 222221111 146679999999765 3455555544444456777
Q ss_pred EEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 271 LVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 271 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
|++|.+. .+...-......+++.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 7766553 222211223568999999999999998877732211 112456788999999988544443
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=8e-06 Score=101.30 Aligned_cols=128 Identities=28% Similarity=0.306 Sum_probs=91.4
Q ss_pred CCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCccccCCCCCCCEEEcc
Q 000354 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLC 588 (1622)
Q Consensus 509 ~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls 588 (1622)
+..+..+.+..|.+.. +- +-+..+++|.+|++.+|.+..+...+..+.+|++|+|++|.|+.+..+..|..|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 3444444455544322 11 114677888888888888887766678888888888888888888888888888888888
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCCCCCccCc-cccCCCCCCCEEEccCCccc
Q 000354 589 CSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 589 ~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 641 (1622)
+|.|..++ .+..+.+|+.+++++|. +..+.. . +..+.+|+.+++.+|.+.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 88888765 45568888888888877 666655 2 356777888888777654
No 130
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.57 E-value=0.0014 Score=74.71 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcC---CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCc----ceEEEEEecCCcCHHHHHHHHHHHhC
Q 000354 144 RESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 144 R~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
-.+.++.+.+++.. ...+-+.|||..|+|||++++++.+..-....= -.|+.|.+...++..+++..|+.+++
T Consensus 42 A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 42 AKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34566777777763 345679999999999999999999865432111 14777888899999999999999999
Q ss_pred CCCCCCChHHHHH-HHHHHHHhcCcEEEEEcCCCChh-----h----hhhccCCCCCCCCCcEEEEEcCcchhhhh----
Q 000354 217 LNFCEESDSERIM-MLCNRLKREKKILVILDDIWTSL-----D----LERTGIPFGDVHRGCKILVTSRRRDVLVS---- 282 (1622)
Q Consensus 217 ~~~~~~~~~~~~~-~l~~~l~~~kr~LlVlDdv~~~~-----~----~~~l~~~l~~~~~gskIlvTTR~~~v~~~---- 282 (1622)
............. ...+.++.-+--+||+|++-+.- + .+.+ ..+.+.-.=+-|.|-|+...-+-.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 8875544444333 33445554577789999996641 1 1111 112222223345555554322211
Q ss_pred cCcccceEEeccCCH-HHHHHHHHHHhC----CCCCCchhHHHHHHHHHHhCCChH
Q 000354 283 EMHCQNNYCVSVLNK-EEAWSLFSKVVG----NCVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 283 ~~~~~~~~~l~~L~~-~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
--.....+.++.... +|...|+..... .....-...+++..|...++|+.=
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 011134566666554 444555443331 112223446789999999999863
No 131
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.56 E-value=0.0004 Score=77.68 Aligned_cols=160 Identities=21% Similarity=0.181 Sum_probs=93.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1622)
...+.|+|..|+|||.|.+++++.......=..+++++ ..+....+...+... ....+...+ ..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~--~~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRL--RS 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHH--CT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhh--hc
Confidence 34578999999999999999999876432223466764 445555555555331 122333444 25
Q ss_pred cEEEEEcCCCChh---hhhh-ccCCCCC-CCCCcEEEEEcCcch---------hhhhcCcccceEEeccCCHHHHHHHHH
Q 000354 240 KILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFS 305 (1622)
Q Consensus 240 r~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gskIlvTTR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 305 (1622)
-=+|++||++... .|.. +...+.. ...|-+||+|++... +.. .+...-++++++++.++-.+++.
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S-Rl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS-RLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH-HHHCSEEEEE----HHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh-hHhhcchhhcCCCCHHHHHHHHH
Confidence 6689999997652 2322 1111111 124668999996442 112 34556689999999999999999
Q ss_pred HHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 306 KVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
+.+..... .--++++.-|++.+.+..-.+..
T Consensus 177 ~~a~~~~~-~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 177 KKAKERGI-ELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHTT---S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHhCC-CCcHHHHHHHHHhhcCCHHHHHH
Confidence 98842111 12245666777777665544433
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0017 Score=83.37 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=111.6
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++..--.. .+.... .....-+..+.|....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~~----~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPTP----EPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCCC----CCCcccHHHHHHhcCC
Confidence 345678999999999988876543 5788999999999999999998874211 110000 0111111111221111
Q ss_pred CCC-----CCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhc
Q 000354 216 GLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSE 283 (1622)
Q Consensus 216 ~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~ 283 (1622)
..+ .......+.++.+..... .+++-++|+|+++.. +.++.+...+......+.+|++|.+. .+...-
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 001122333344433332 246678999999865 45666655554433455555555433 332211
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
......+++..++.++....+.+.+...... -..+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2235578888999999888888776432111 11345778999999987654443
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=8.3e-06 Score=104.16 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=47.2
Q ss_pred CccccEEEEeccCCccccCCchhhhhccCCcEEEEecc-CCcceeeccccCcccccccccCccCeecccCCCccccccCC
Q 000354 939 IQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC-TVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPG 1017 (1622)
Q Consensus 939 l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~C-~~L~~l~~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~l~~~ 1017 (1622)
++.|+.|.+.+|..+....-...+..++.|++|++.+| ......... .......+++|+.|.+..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 45666666666666655322234556666777776663 221111100 0012223456666666666554443333
Q ss_pred cccccCCCcceEEEecCCcc
Q 000354 1018 IHTLEWPLLKRLEVYGCNKV 1037 (1622)
Q Consensus 1018 ~~~~~~~sL~~L~I~~C~~L 1037 (1622)
.....|++|+.|.+.+|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNL 282 (482)
T ss_pred HHHhhCCCcceEccCCCCcc
Confidence 33334566666666666554
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0022 Score=80.06 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=106.9
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhcc--C-----------------CcceEEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--R-----------------IFDEVVFA 196 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~--~-----------------~F~~~~wv 196 (1622)
....++|.+..+..+..++..+.. ..+.++|+.|+||||+|+.++....-. . .|.-++++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 345678999999999999876554 456789999999999999998875310 0 01112223
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEE
Q 000354 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1622)
Q Consensus 197 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskI 270 (1622)
+.+.... .+.++.+..... .+++-++|+|+++.. ...+.+...+........+
T Consensus 94 daas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 94 DAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred eCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2222111 122222222221 256779999998765 3455554444433344555
Q ss_pred EEEc-CcchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 271 LVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 271 lvTT-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
|++| +...+..........+.+.+++.++-...+.+.+..... ....+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 433332211223457899999999998888887632111 1123456778888998765444433
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.0012 Score=88.22 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=101.4
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCC----cceEEE-EEecCCcCHHHHHHH
Q 000354 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVF-AEVSQTPDLKRIRRE 210 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~i~~~ 210 (1622)
.....++||+.++.++++.|......-+.++|.+|+||||+|..++++...... .+..+| +.++.-.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 345578999999999999998666667789999999999999999998743211 123333 3222100
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHh-cCcEEEEEcCCCChh---------hhhhccCCCCCCCCC-cEEEEEcCcchh
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDV 279 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-skIlvTTR~~~v 279 (1622)
............+..+...+.+ +++.+|++|++.... +...+..+.. ..| -++|-+|...+.
T Consensus 256 -----ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 -----AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEY 328 (852)
T ss_pred -----cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHH
Confidence 0000001112333444444432 478999999975541 1111222222 233 345555554322
Q ss_pred hhh------cCcccceEEeccCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHhCC
Q 000354 280 LVS------EMHCQNNYCVSVLNKEEAWSLFSKVVG---NCVEDPDLQTVAIQVANECGG 330 (1622)
Q Consensus 280 ~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~c~g 330 (1622)
... .......+.+++++.+++.++++.... ....-.-..+....+++.+.+
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 110 122346899999999999999765442 111111123445556665544
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00088 Score=89.89 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=93.5
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCC---c-ceEEEEEecCCcCHHHHHHHHHH
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
...++||++++++++++|......-+.++|.+|+|||++|..++.+.....- . +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4468999999999999998655556789999999999999999988752211 1 244552 1 1111110
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh---------hhhhccCCCCCCCCCcEEEEEcCcchhhh---
Q 000354 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLERTGIPFGDVHRGCKILVTSRRRDVLV--- 281 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gskIlvTTR~~~v~~--- 281 (1622)
+.. ......+.+..+.+.+.+.++.+|++|++.... +...+..+....+ .-++|.+|...+...
T Consensus 249 --g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 111 111233455556666655678999999985331 1122222221111 234555555443211
Q ss_pred ---hcCcccceEEeccCCHHHHHHHHHHH
Q 000354 282 ---SEMHCQNNYCVSVLNKEEAWSLFSKV 307 (1622)
Q Consensus 282 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~ 307 (1622)
........+.++..+.++...+++..
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 01223457889999999988887754
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=0.00011 Score=58.74 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=17.3
Q ss_pred CccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc
Q 000354 536 KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI 573 (1622)
Q Consensus 536 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l 573 (1622)
+|++|++++|.+..+|..|++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34455555555554444444444444444444444433
No 138
>PRK05642 DNA replication initiation factor; Validated
Probab=97.48 E-value=0.00058 Score=77.34 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=90.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.|+|..|+|||.||+.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~--~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ--Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh--C
Confidence 578999999999999999999876532 24567776432 1111 0123333331 2
Q ss_pred EEEEEcCCCCh---hhhhh-ccCCCCC-CCCCcEEEEEcCcchh--hhh------cCcccceEEeccCCHHHHHHHHHHH
Q 000354 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRDV--LVS------EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1622)
Q Consensus 241 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gskIlvTTR~~~v--~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~ 307 (1622)
=+||+||+... ..|+. +...+.. ...|.+||+|++...- ... .+....++++++++.++-.+.++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 37889999643 34433 2222221 2246679998875321 110 2333467899999999999999966
Q ss_pred hCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 000354 308 VGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1622)
Q Consensus 308 ~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig 339 (1622)
+.... -.-.+++..-|++.+.|-.-++..+-
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 63211 11224677778888877765544443
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.46 E-value=0.00034 Score=84.11 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=72.2
Q ss_pred ccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000354 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 219 (1622)
.+++.+..++.++..|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++..+..+.+..+.- .+...
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCe
Confidence 4567788888998888643 46888999999999999999998876667889999999999887766542210 00000
Q ss_pred CCCChHHHHHHHHHHHHh--cCcEEEEEcCCCCh
Q 000354 220 CEESDSERIMMLCNRLKR--EKKILVILDDIWTS 251 (1622)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 251 (1622)
.-....+.++.+...+ +++++||+|++...
T Consensus 253 --~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 --RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred --EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0001112222222222 47899999998765
No 140
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.46 E-value=0.0011 Score=75.12 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=93.0
Q ss_pred HHHHHHHHHc-CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000354 147 ILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1622)
Q Consensus 147 ~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 225 (1622)
.+..+.++.. ....+.+.|+|..|+|||+||+.+++..... . ..+++++..+... . +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~~------~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPLL------A----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhHH------H----H----------
Confidence 3444444443 2344678999999999999999999876422 1 2344554332110 0 0
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCCChhhh--hhccCCCCC-CCCCc-EEEEEcCcchhhhh-------cCcccceEEecc
Q 000354 226 ERIMMLCNRLKREKKILVILDDIWTSLDL--ERTGIPFGD-VHRGC-KILVTSRRRDVLVS-------EMHCQNNYCVSV 294 (1622)
Q Consensus 226 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-kIlvTTR~~~v~~~-------~~~~~~~~~l~~ 294 (1622)
.. ....-+||+||+.....+ ..+...+.. ...|. .||+|++....... .+.....+++.+
T Consensus 86 -------~~--~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DF--DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hh--cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 00 123457899999755321 222222211 11233 46666664322110 122246889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000354 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1622)
Q Consensus 295 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L 342 (1622)
+++++-..++.+.+.... -.--++....+++...|.+..+..+...+
T Consensus 157 l~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999887777776552111 11224567788888999998877666554
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.46 E-value=0.0012 Score=76.48 Aligned_cols=135 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
...-+.++|++|+||||+|+.+++.......-....++.++.. ++... .+ +.. ..... +.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~~-----g~~-~~~~~---~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---YI-----GHT-AQKTR---EVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---hc-----cch-HHHHH---HHHHhc
Confidence 3456889999999999999999987532111111223333221 11111 01 111 11112 222222
Q ss_pred CcEEEEEcCCCCh----------hhhhhccCCCCCCCCCcEEEEEcCcchhhh------h-cCcccceEEeccCCHHHHH
Q 000354 239 KKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV------S-EMHCQNNYCVSVLNKEEAW 301 (1622)
Q Consensus 239 kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~------~-~~~~~~~~~l~~L~~~ea~ 301 (1622)
..-+|++|++... +..+.+...+........+|+++...+... . .......+++++++.+|-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 3458899999752 223334333333333345555554332200 0 0111346899999999999
Q ss_pred HHHHHHhC
Q 000354 302 SLFSKVVG 309 (1622)
Q Consensus 302 ~Lf~~~~~ 309 (1622)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988874
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.0017 Score=80.61 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=91.8
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccC---CcceEEEEEecC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGR---IFDEVVFAEVSQ 200 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~ 200 (1622)
....+.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+++++...... ......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34567788888888877653 1 2345689999999999999999999875221 112344555443
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HhcCcEEEEEcCCCChh---------h-----hhhccCCCC
Q 000354 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL---------D-----LERTGIPFG 262 (1622)
Q Consensus 201 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~---------~-----~~~l~~~l~ 262 (1622)
.. ++.. ..+. ....+..+.+.. ..+++++|+||+++... + +..+...+.
T Consensus 260 ~e----Ll~k--------yvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE----LLNK--------YVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh----hccc--------ccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 21 1100 0001 111222222222 23578999999997531 1 112222222
Q ss_pred C--CCCCcEEEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCC
Q 000354 263 D--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGN 310 (1622)
Q Consensus 263 ~--~~~gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 310 (1622)
. ...+..||.||-..+..+..+ ..+..|+++..+.++..++|+++...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 123444555665544333211 22456999999999999999998854
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.0026 Score=80.72 Aligned_cols=177 Identities=10% Similarity=0.109 Sum_probs=109.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC--------------------CcceEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVF 195 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~w 195 (1622)
....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..--.. +++ +++
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~ 92 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIE 92 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEE
Confidence 455688999999999999886554 4688999999999999999998764211 111 111
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcE
Q 000354 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK 269 (1622)
Q Consensus 196 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gsk 269 (1622)
+..... ...+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.
T Consensus 93 idgas~---------------------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 93 IDGASN---------------------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred ecCccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 211111 11222222222211 256778999998765 456666666655445666
Q ss_pred EEEEcCc-chhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 000354 270 ILVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1622)
Q Consensus 270 IlvTTR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 336 (1622)
+|++|.. ..+...-......++..+++.++-...+.+.+.... ..-..+.+..|++.++|.+-.+.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 6666543 333221122345789999999999888887763211 11224567788899999775443
No 144
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00016 Score=57.73 Aligned_cols=39 Identities=41% Similarity=0.585 Sum_probs=21.0
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccC
Q 000354 581 NLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIP 620 (1622)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp 620 (1622)
+|++|++++|.|+.+|..+++|++|++|++++|. +.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555555555565555555666666666666554 44443
No 145
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=2.2e-05 Score=88.46 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=71.0
Q ss_pred cCCCCccEEEecCCcCc-cc----CccCCCCCCCcEEEccCCCCCCc---------------cccCCCCCCCEEEccCCC
Q 000354 532 AGMPKLRVLVLTRMKLL-TL----PSSFCHLPNLESLCLDQCILGDI---------------AIIGNLKNLEILSLCCSD 591 (1622)
Q Consensus 532 ~~l~~Lr~L~Ls~~~i~-~l----p~~i~~L~~Lr~L~L~~~~l~~l---------------~~i~~L~~L~~L~Ls~~~ 591 (1622)
.++++|++|+||.|.+. .- -.-|.++..|+.|.|.+|.++.. ..+++-.+||++....|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 45556777777777654 11 12245566777777777765322 234555666666666665
Q ss_pred Ccccc-----hhhhcCCCCCEEEccCCCCCCccCcc------ccCCCCCCCEEEccCCccccccccccccccccChhhhC
Q 000354 592 IEQLP-----REIGELTQLKLLDLSNCSKLKVIPPN------VISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELS 660 (1622)
Q Consensus 592 i~~LP-----~~i~~L~~L~~L~L~~~~~l~~lp~~------~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 660 (1622)
+..-+ ..+...+.|+.+.+..|. +. |.+ .+..+++|+.|++.+|.+. ..........+.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~-I~--~eG~~al~eal~~~~~LevLdl~DNtft-------~egs~~LakaL~ 238 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNG-IR--PEGVTALAEALEHCPHLEVLDLRDNTFT-------LEGSVALAKALS 238 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEeccc-cc--CchhHHHHHHHHhCCcceeeecccchhh-------hHHHHHHHHHhc
Confidence 54332 234555666666666654 21 111 1456666666666666554 111122334455
Q ss_pred CCCCCCEEEEeecC
Q 000354 661 ILSHLTTLEIHIRD 674 (1622)
Q Consensus 661 ~L~~L~~L~l~~~~ 674 (1622)
.+++|+.|++..+.
T Consensus 239 s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL 252 (382)
T ss_pred ccchheeecccccc
Confidence 55566666555443
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=7.2e-05 Score=96.54 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=43.7
Q ss_pred ChhhhcCCCCccEEEecCCcCc--ccCccCCCCCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccc--hhhhcC
Q 000354 527 PDNFFAGMPKLRVLVLTRMKLL--TLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLP--REIGEL 602 (1622)
Q Consensus 527 p~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~L 602 (1622)
|..+...++.|+.|.+.+-.+. ++..-..++++|+.||+++++++.+..+++|+||++|.+.+=.+..-+ ..+.+|
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 3333344555555555554432 222223455555566666665555555566666666655543333211 234556
Q ss_pred CCCCEEEccCC
Q 000354 603 TQLKLLDLSNC 613 (1622)
Q Consensus 603 ~~L~~L~L~~~ 613 (1622)
++|++||+|..
T Consensus 220 ~~L~vLDIS~~ 230 (699)
T KOG3665|consen 220 KKLRVLDISRD 230 (699)
T ss_pred cCCCeeecccc
Confidence 66666666553
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.39 E-value=0.0035 Score=77.57 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=93.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.|+|..|+|||+||+++++.......=..+++++. .++..++...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 46899999999999999999998763321134566643 33344454444321 1223333443 24
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCcEEEEEcCcch---------hhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gskIlvTTR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
-+||+||+.... .+ +.+...+.. ...|..||+||.... +.. .+.....+.+++.+.++-..++++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS-RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh-hccCCeEEEeCCCCHHHHHHHHHH
Confidence 489999997542 11 112211111 113456888876421 111 233445789999999999999999
Q ss_pred HhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 307 ~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
.+.... ..-.+++...|++.+.|..-.+
T Consensus 280 ~~~~~~-~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 280 KAEEEG-LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCCHHHH
Confidence 885322 1122567788888888876543
No 148
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.36 E-value=0.0037 Score=72.93 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=73.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcE
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI 241 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 241 (1622)
-+.++|++|+|||++|+.++............-|+.++. .++ ...+.. .+. .... +.+.+-..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~---~~~~~a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTK---EILKRAMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHH---HHHHHccCc
Confidence 588999999999999999988765322222222444442 122 111111 111 1122 222223446
Q ss_pred EEEEcCCCCh-----------hhhhhccCCCCCCCCCcEEEEEcCcchhhhh-------cCcccceEEeccCCHHHHHHH
Q 000354 242 LVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSL 303 (1622)
Q Consensus 242 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~L 303 (1622)
+|++|++... +.++.+...+.....+.+||+++.....-.. .......+++++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998632 2233333333334455667776653321110 011135789999999999999
Q ss_pred HHHHhC
Q 000354 304 FSKVVG 309 (1622)
Q Consensus 304 f~~~~~ 309 (1622)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988773
No 149
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.0048 Score=75.45 Aligned_cols=137 Identities=20% Similarity=0.172 Sum_probs=89.5
Q ss_pred ccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC
Q 000354 142 ESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE 221 (1622)
Q Consensus 142 ~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 221 (1622)
..|...+.++++.+..... ++.|+|+-++||||+++.+....... .++++.-+......-+.+..
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~--------- 84 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL--------- 84 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH---------
Confidence 3455566677776654433 99999999999999997766555422 56665443322111111111
Q ss_pred CChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhh-----cCcccceEEeccCC
Q 000354 222 ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLN 296 (1622)
Q Consensus 222 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-----~~~~~~~~~l~~L~ 296 (1622)
..+ ..+...++..|+||.|....+|......+.+.++. +|+||+-+...... .-|....+++-||+
T Consensus 85 -------~~~-~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 85 -------RAY-IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -------HHH-HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111 11112277899999999999999887777666666 89998887654433 23445689999999
Q ss_pred HHHHHH
Q 000354 297 KEEAWS 302 (1622)
Q Consensus 297 ~~ea~~ 302 (1622)
-.|...
T Consensus 156 F~Efl~ 161 (398)
T COG1373 156 FREFLK 161 (398)
T ss_pred HHHHHh
Confidence 999865
No 150
>CHL00181 cbbX CbbX; Provisional
Probab=97.35 E-value=0.0036 Score=72.94 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=73.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .+. .. .... ..+.+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~---~~l~~a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTK---EVLKKAMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHH---HHHHHccC
Confidence 3588999999999999999988754221111122444441 1222111 111 11 1111 22222234
Q ss_pred EEEEEcCCCCh-----------hhhhhccCCCCCCCCCcEEEEEcCcchhhhh-------cCcccceEEeccCCHHHHHH
Q 000354 241 ILVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWS 302 (1622)
Q Consensus 241 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~ 302 (1622)
-+|++|++... +..+.+...+.....+.+||+++....+... .-.....+.+++++.+|-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999998642 2223333333334445677777754332110 01124578999999999999
Q ss_pred HHHHHhC
Q 000354 303 LFSKVVG 309 (1622)
Q Consensus 303 Lf~~~~~ 309 (1622)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9988873
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0041 Score=73.38 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=114.3
Q ss_pred cccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC-------------CcceEEEEEecCCcCH
Q 000354 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------IFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------~F~~~~wv~vs~~~~~ 204 (1622)
..++|.+..++.+...+..+++ ....++|+.|+||+++|..+++..--.. ...-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999887664 7899999999999999999988763211 1112334421100000
Q ss_pred HHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcC-
Q 000354 205 KRIRREIADQLG--LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR- 275 (1622)
Q Consensus 205 ~~i~~~i~~~l~--~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR- 275 (1622)
..+-.+.+...+ ......-..+.++.+.+.+. .+++-++|+|+++.. ...+++...+.... .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 000011111111 11111223345555655554 257789999998765 34555554443333 334555554
Q ss_pred cchhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 276 RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
...+...-......+.+.++++++..+.+.+........ .....++..++|.|..+..+
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 434433223345689999999999999999865321111 11357889999999765543
No 152
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=8.8e-05 Score=95.76 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=89.3
Q ss_pred cccccEEEecccCC--CCCCCCC--CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcE
Q 000354 487 LKNCIAIFLHDINT--GELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLES 562 (1622)
Q Consensus 487 ~~~lr~Lsl~~~~~--~~lp~~~--~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 562 (1622)
..++++|.+.+... ..-|..+ .+|.|++|.+.+-.+...-....+.++++|+.||+|+++++.+ ..+++|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 34577888876431 1122222 6899999999875543332334568899999999999999988 77999999999
Q ss_pred EEccCCCCCC---ccccCCCCCCCEEEccCCCCcccchh-------hhcCCCCCEEEccCC
Q 000354 563 LCLDQCILGD---IAIIGNLKNLEILSLCCSDIEQLPRE-------IGELTQLKLLDLSNC 613 (1622)
Q Consensus 563 L~L~~~~l~~---l~~i~~L~~L~~L~Ls~~~i~~LP~~-------i~~L~~L~~L~L~~~ 613 (1622)
|.+.+-.+.. +..+.+|++|++||+|......-+.- -..|++|+.||.+++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9998876643 46888999999999998654433321 123666666666654
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.005 Score=78.57 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=107.1
Q ss_pred CccccccHHHHHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.+...+.+..++..+. .+.+.++|+.|+||||+|+.+++..--...-+. ..++.-..-+.|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 45568899999999999987554 456778999999999999999876532110000 0000000011111000
Q ss_pred CCCC-----CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhhhhc
Q 000354 216 GLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSE 283 (1622)
Q Consensus 216 ~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~~~ 283 (1622)
..+. ......+.++.+..... .+++-++|+|++... ..++.+...+........+|++| ....+...-
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 0000 00112233333333322 256778899999765 45666655554433455555544 433333211
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
......++..+++.++....+...+..... .-..+....|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 223457888999999998888887732111 111355778888888877543
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.30 E-value=0.0013 Score=75.44 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred cccccHHHHHHHHHHHHcCCC--e-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 139 EFIESRESILNDILDALRGPY--V-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~--~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
..|.+|+..+..+..++-+.. . ..|.|+|-.|.|||.+.+++.+.... ..+|+++-+.++.+.++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 357799999999998887432 2 35589999999999999999988742 368999999999999999999998
Q ss_pred C-CCCCCCChH---HHHHHHHHHHHh-------cCcEEEEEcCCCChhhhhhccCC----CC--CCCCCcEEEEEcCcch
Q 000354 216 G-LNFCEESDS---ERIMMLCNRLKR-------EKKILVILDDIWTSLDLERTGIP----FG--DVHRGCKILVTSRRRD 278 (1622)
Q Consensus 216 ~-~~~~~~~~~---~~~~~l~~~l~~-------~kr~LlVlDdv~~~~~~~~l~~~----l~--~~~~gskIlvTTR~~~ 278 (1622)
. .+.++.... +........+.+ ++.++||||+++...+.+++..+ +. -..+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 5 333332111 222222222221 46899999999877554433211 00 011223 344443222
Q ss_pred hhhh--cCcccc--eEEeccCCHHHHHHHHHHH
Q 000354 279 VLVS--EMHCQN--NYCVSVLNKEEAWSLFSKV 307 (1622)
Q Consensus 279 v~~~--~~~~~~--~~~l~~L~~~ea~~Lf~~~ 307 (1622)
-... .+|... ++..+..+.+|...++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1111 245443 4667788899999888663
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.26 E-value=0.006 Score=76.55 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
.-+.|+|..|+|||+||+++++.......-..+++++.. ++..++...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 468999999999999999999988633212345566533 3333444443211 1123334443 45
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCcEEEEEcCcch---------hhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gskIlvTTR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
-+||+||+.... .+ +.+...+.. ...|..||+||.... +.. .+.....+++++.+.++-..++++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHHHHHHHHHH
Confidence 589999996531 11 222221111 113445888886532 112 344456899999999999999999
Q ss_pred HhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 307 ~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
.+... ...-.+++..-|++.+.|..-.+
T Consensus 292 ~~~~~-~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEE-GIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHc-CCCCCHHHHHHHHcCcCCCHHHH
Confidence 88432 11222467788888888876543
No 156
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.26 E-value=0.0054 Score=74.66 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=98.9
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
...++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++.... .| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEeh---
Confidence 34567788877777776543 1 23567899999999999999999987652 22 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh------------h----hhhccCCCCC--CC
Q 000354 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFGD--VH 265 (1622)
Q Consensus 204 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~~ 265 (1622)
..+... .++ . ....+..+........+.+|++|+++... . +..+...+.. ..
T Consensus 213 -s~l~~k---~~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQK---YLG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHH---hcc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 111 1 12233444445555688999999976431 0 1111111111 22
Q ss_pred CCcEEEEEcCcchhhhhc-C---cccceEEeccCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHhCCCh
Q 000354 266 RGCKILVTSRRRDVLVSE-M---HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 266 ~gskIlvTTR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~glP 332 (1622)
.+..||+||...+..+.. . ..+..+.++..+.++...+|+.+..... .+.+ ..++++...|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 456788888766544321 1 2345789999999998889987764322 1222 345666666653
No 157
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0029 Score=81.16 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=107.6
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
....++|.+.....|...+..+.+ ..+.++|+.|+||||+|+.+++..--....+. ..++.-..-++|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 455688999999999999876655 46789999999999999999887531111100 0000000000000000
Q ss_pred CC-----CCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc-Ccchhhhhc
Q 000354 216 GL-----NFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSE 283 (1622)
Q Consensus 216 ~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT-R~~~v~~~~ 283 (1622)
.. +.......+.++.+...+. .+++-++|+|+|... ...+.+...+......+.+|++| ....+...-
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0000111222333333322 246668999998765 34555555444434456666544 444444322
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh-HHHHHH
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTV 338 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~i 338 (1622)
......+++.+++.++....+...+..... .-..+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 233557889999999988888876632211 112345678888888865 444444
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0055 Score=77.01 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=92.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.|+|..|+|||.|++++++.......-..+++++ ..++..++...+... ..+.+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 3589999999999999999999875322223456664 334444444433211 1122333332 34
Q ss_pred EEEEEcCCCCh---hhhh-hccCCCCC-CCCCcEEEEEcCcc---------hhhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 241 ILVILDDIWTS---LDLE-RTGIPFGD-VHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 241 ~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gskIlvTTR~~---------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
=+|||||+... +.|. .+...+.. ...|..|||||+.. .+.. .+...-++++.+.+.+.-.+++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHHHHHHHHH
Confidence 58999999765 2222 22222211 12355688888853 1222 355567899999999999999999
Q ss_pred HhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 307 VVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 307 ~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
++.... -.--+++..-|++.+.+..
T Consensus 458 ka~~r~-l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQ-LNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcC-CCCCHHHHHHHHHhccCCH
Confidence 884321 1122466777777776554
No 159
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.20 E-value=6.8e-05 Score=95.75 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=33.4
Q ss_pred ccCceeEEecCcc-cccccccCCCccccccccEEEEeeCC-CCCcc-HHHHhhcCccceEEEE-ccce
Q 000354 1071 GSHLEELKLSGKD-ITMIREGRLPTYLFQNLKILEVVNDK-SDNFP-ICFLQYFKNLEKLELR-WSSY 1134 (1622)
Q Consensus 1071 ~~~L~~L~L~~~~-l~~l~~~~~~~~~l~~L~~L~L~~c~-l~~~~-~~~l~~l~sL~~L~I~-c~~l 1134 (1622)
+.+|+.|+++.+. +++.....+. ..+++|+.|.+.+|. ++... ....+.+++|++|+|+ |..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455555555532 3322211111 125677777777676 33332 2344667778888887 6665
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0023 Score=83.66 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=93.1
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccC-C---cceEEEEEecCCcCHHHHHHHHHH
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGR-I---FDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
...++||++++.++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 456899999999999998864444567899999999999999998763221 1 24455521 11111 10
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh----------hhhhhccCCCCCCCCCcEEEEEcCcchhhh--
Q 000354 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV-- 281 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~-- 281 (1622)
+.. ...........+...+.+.+..+|++|++... .+...+..++... ..-+||-+|...+...
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 111 11122334455556665567789999998643 1222222222221 1234444444333211
Q ss_pred ---h-cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 282 ---S-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 282 ---~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
. .......+.+++.+.+++.++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 11234579999999999999998755
No 161
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.019 Score=63.80 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=97.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHH
Q 000354 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 209 (1622)
+.....|+|.++.++++-=.+. .+..--|.++|++|.||||||.-+++...+. +. ++ +.+-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~t--sGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----IT--SGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----ec--ccccc-----
Confidence 3445679999988888776665 3456689999999999999999999998754 11 11 11100
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh---------hhhhccCCC-CCCCCCcE----------
Q 000354 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLERTGIPF-GDVHRGCK---------- 269 (1622)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~l-~~~~~gsk---------- 269 (1622)
.....+..+...+ .+.=.+.+|.+-... .-+++.... -..++++|
T Consensus 89 -------------eK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 89 -------------EKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -------------cChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 0111111122222 233344455543220 011111000 01122222
Q ss_pred -EEEEcCcchhhhh-cCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 270 -ILVTSRRRDVLVS-EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 270 -IlvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
|=-|||.-.+... ...-..+.+++-.+.+|-.+...+.++.-. -.-.++.+.+|+++..|-|--.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHH
Confidence 3358886554442 112234678999999999999988884211 1122456889999999999543
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.17 E-value=0.0044 Score=83.49 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=92.1
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCC----cceEEE-EEecCCcCHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVF-AEVSQTPDLKRIRREI 211 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~i~~~i 211 (1622)
....++||+.++.++++.|......-+.++|.+|+|||++|..++.+...... ....+| +++ ..++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHhh--
Confidence 34568999999999999998665566779999999999999999988743211 122333 221 11110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHh-cCcEEEEEcCCCChh---------hhhhccCCCCCCCCCcEEEEEcCcchhhh
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gskIlvTTR~~~v~~ 281 (1622)
+.... ......+..+...+.+ +++.+|++|++.... +...+..+....+ .-++|-+|...+...
T Consensus 243 ----~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 ----GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred ----cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHH
Confidence 00000 1122344455555543 468999999986442 1122222222222 234454544443211
Q ss_pred -----h-cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 282 -----S-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 282 -----~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
. .......+.+...+.++...+++...
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 0 11234568899999999999988654
No 163
>CHL00176 ftsH cell division protein; Validated
Probab=97.15 E-value=0.007 Score=77.85 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=96.1
Q ss_pred ccccHHH---HHHHHHHHHcCC---------CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHH
Q 000354 140 FIESRES---ILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1622)
Q Consensus 140 ~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 207 (1622)
.+.|.++ ++.++++++... ..+-|.++|++|+|||++|+.++....+ -|+.++.. ++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccHH----HH
Confidence 3455554 445555555422 1346899999999999999999987642 13333211 11
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh----------------hhhhccCCCCC--CCCCcE
Q 000354 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFGD--VHRGCK 269 (1622)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gsk 269 (1622)
.... .+ .....+..+.+........+|++||++... .+..+...+.. ...+-.
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 01 012234444555555788999999996431 12222222211 234556
Q ss_pred EEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 270 ILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 270 IlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
||.||...+.....+ ..+..+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 777776654433211 1246789999999999999998885422221 22356777777773
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.14 E-value=0.0056 Score=82.16 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCC----cce-EEEEEecCCcCHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDE-VVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~-~~wv~vs~~~~~~~i~~~i 211 (1622)
....++||+.++.++++.|......-+.++|.+|+|||+||..++.+...... ... +++++++.-..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-------- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh--------
Confidence 34568999999999999998666667789999999999999999998743211 122 23332221100
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHh-cCcEEEEEcCCCChh---------hhhhccCCCCCCCCCcEEEEEcCcchhh-
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRGCKILVTSRRRDVL- 280 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gskIlvTTR~~~v~- 280 (1622)
+.. ........+..+...+.+ +++.+|++|++.... +...+..+....+ .-++|-+|...+..
T Consensus 248 ----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQ 321 (857)
T ss_pred ----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHH
Confidence 000 001122334444444432 578999999986542 1222322322222 23455544443321
Q ss_pred ----hh-cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 281 ----VS-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 281 ----~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
+. .......+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 00 11223467788789999999887654
No 165
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.14 E-value=9.5e-05 Score=83.43 Aligned_cols=179 Identities=22% Similarity=0.230 Sum_probs=97.7
Q ss_pred cccEEEecccCCCC--CCC---CC-CCCCccEEEccCCCCCCCCC------------hhhhcCCCCccEEEecCCcCccc
Q 000354 489 NCIAIFLHDINTGE--LPE---GL-EYPHLTSLCMNPKDPFLHIP------------DNFFAGMPKLRVLVLTRMKLLTL 550 (1622)
Q Consensus 489 ~lr~Lsl~~~~~~~--lp~---~~-~~~~Lr~L~L~~n~~~~~lp------------~~~f~~l~~Lr~L~Ls~~~i~~l 550 (1622)
+++.|+|++|-++. ++. .+ .+..|+.|.|.+|.+...-- ..-..+-..|||+...+|.+..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 35666666665542 111 11 46666667666665421100 00013345677777777766532
Q ss_pred -----CccCCCCCCCcEEEccCCCCCC-----c-cccCCCCCCCEEEccCCCCc-----ccchhhhcCCCCCEEEccCCC
Q 000354 551 -----PSSFCHLPNLESLCLDQCILGD-----I-AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCS 614 (1622)
Q Consensus 551 -----p~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~L~~~~ 614 (1622)
-..|...+.|+.+.+..|.|.. + ..+..+++|++|||..|.++ .|-..+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2335555677777777776532 1 45667777777777777655 233445666777777777775
Q ss_pred CCCcc-----CccccCCCCCCCEEEccCCccccccccccccccccChhhhCCCCCCCEEEEeecCC
Q 000354 615 KLKVI-----PPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1622)
Q Consensus 615 ~l~~l-----p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1622)
+..- -...-...++|++|.+.+|.+...- .......+...+.|..|++++|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da-------~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRDA-------ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHHH-------HHHHHHHHhcchhhHHhcCCcccc
Confidence 3321 1111123567777777777665211 112223344466777777777765
No 166
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.14 E-value=0.0035 Score=76.67 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=90.2
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
...++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++.... .| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc--
Confidence 34456788888887777653 1 23456889999999999999999997652 23 222111
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh----------------hhhccCCCCC--CC
Q 000354 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD----------------LERTGIPFGD--VH 265 (1622)
Q Consensus 204 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~l~~--~~ 265 (1622)
++.... ++ .....+..+.+....+.+.+|+||+++.... +..+...+.. ..
T Consensus 252 --eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111110 11 1112233444444446788999999754310 0111111111 12
Q ss_pred CCcEEEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhC
Q 000354 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1622)
Q Consensus 266 ~gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 309 (1622)
.+.+||+||...+.....+ ..+..+.+...+.++..++|..++.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 3567888887665544321 2345789999999999999998874
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0099 Score=70.53 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=94.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccC--------------------CcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 219 (1622)
...+.++|+.|+||||+|..+++..--.. |-| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45788999999999999999998764211 111 122211000
Q ss_pred CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcchh-hhhcCcccceEEe
Q 000354 220 CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRDV-LVSEMHCQNNYCV 292 (1622)
Q Consensus 220 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~v-~~~~~~~~~~~~l 292 (1622)
...-..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+.....++.+|+||.+... ...-......+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 00112334444444332 245666778999875 4556665555444457777777776643 3212233567999
Q ss_pred ccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 293 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.+++.+++.+.+.+..+.. ..+.+..++..++|.|..+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998754211 1234567789999999765443
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.002 Score=81.98 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=41.2
Q ss_pred CCCccccccHHHHHHHHHHHHcC-----CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 135 NEGHEFIESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+.....++|.++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34456788889889999988873 2346799999999999999999998664
No 169
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.006 Score=75.72 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=93.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
.-+.|+|..|+|||+||+++++.......-..++|++. .+...++...+... . ...+.+.+. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~---~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K---LNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----c---HHHHHHHHH-hcC
Confidence 45999999999999999999998763221134667753 34555555554321 1 122233332 345
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCcEEEEEcC-cchhh----hh---cCcccceEEeccCCHHHHHHHHHHH
Q 000354 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSR-RRDVL----VS---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1622)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gskIlvTTR-~~~v~----~~---~~~~~~~~~l~~L~~~ea~~Lf~~~ 307 (1622)
-+||+||+.... .+ +.+...+.. ...|..||+||. ...-. .+ .+...-++.+++.+.++-.+++++.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 689999997531 11 122111111 113446888885 22211 11 2344557899999999999999998
Q ss_pred hCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 308 VGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 308 ~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
+.... -.--+++...|++...|.--.
T Consensus 276 ~~~~~-~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 276 LEIEH-GELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHhcC-CCCCHHHHHHHHhccccCHHH
Confidence 84321 112246677888888775433
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.0015 Score=67.43 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=52.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.|+|++|+||||+|+.++....... ..+++++.+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999998876332 34666655544332222211 11111122222333444445555543345
Q ss_pred EEEEEcCCCChh
Q 000354 241 ILVILDDIWTSL 252 (1622)
Q Consensus 241 ~LlVlDdv~~~~ 252 (1622)
.+|++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999998874
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.0015 Score=66.74 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=42.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC-cE
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK-KI 241 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-r~ 241 (1622)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ........+..+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999999852 1344433221100 11122233444444444444 89
Q ss_pred EEEEcCCCCh
Q 000354 242 LVILDDIWTS 251 (1622)
Q Consensus 242 LlVlDdv~~~ 251 (1622)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998765
No 172
>PRK06620 hypothetical protein; Validated
Probab=96.97 E-value=0.0031 Score=70.22 Aligned_cols=135 Identities=16% Similarity=0.021 Sum_probs=78.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
+.+.|+|++|+|||+|++.+++.... .++. ..+. . . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-------------------~-~-------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-------------------N-E-------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-------------------c-h-------hHH--hcC
Confidence 57999999999999999987765431 1211 0000 0 0 011 133
Q ss_pred EEEEEcCCCChhhhhhccCCCCC-CCCCcEEEEEcCcchhh---hh---cCcccceEEeccCCHHHHHHHHHHHhCCCCC
Q 000354 241 ILVILDDIWTSLDLERTGIPFGD-VHRGCKILVTSRRRDVL---VS---EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVE 313 (1622)
Q Consensus 241 ~LlVlDdv~~~~~~~~l~~~l~~-~~~gskIlvTTR~~~v~---~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 313 (1622)
-+|++||+....+ ..+...+.. ...|..||+|++...-. .. .+...-+++++++++++-..++++.+... .
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~ 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-S 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-C
Confidence 5788899974322 111111110 13466899998854321 11 34445589999999999888888877421 1
Q ss_pred CchhHHHHHHHHHHhCCChHHH
Q 000354 314 DPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 314 ~~~~~~~~~~I~~~c~glPLai 335 (1622)
-.--+++..-|++.+.|---.+
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHH
Confidence 1122456777777776655433
No 173
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.018 Score=67.66 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcce-----EEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000354 146 SILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-----VVFAEVSQTPDLKRIRREIADQLGLNF 219 (1622)
Q Consensus 146 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-----~~wv~vs~~~~~~~i~~~i~~~l~~~~ 219 (1622)
...+.+.+.+..+++ ..+.++|+.|+||+++|..+++..--.....+ .-|+..+..+|+..+-.. -+.-+...
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcccccc
Confidence 445667777765554 46889999999999999999887642111100 001111111110000000 00000000
Q ss_pred CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceEEe
Q 000354 220 CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCV 292 (1622)
Q Consensus 220 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~~l 292 (1622)
...-..+.+..+.+.+. .+++-++|+|+++.. ..-+.+...+.....++.+|++|.+. .+...-......+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 00112344444444433 257789999999876 33444444444444577777777654 333322233567899
Q ss_pred ccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 293 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.+++.+++.+.+.+. |. + +..+..++..++|.|+.+..+
T Consensus 170 ~~~~~~~~~~~L~~~-~~--~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 170 KLPPAHEALAWLLAQ-GV--S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCcCHHHHHHHHHHc-CC--C----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999999888753 21 1 223667899999999865443
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.97 E-value=0.028 Score=62.24 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCccccccHHHHHHHHHHH----HcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 136 EGHEFIESRESILNDILDA----LRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
.....++|.+..++.|++- +......-+.+||..|+|||++++++.+.+..+. .--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~---------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE---------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH----------
Confidence 3455677877777766654 4455666788999999999999999999887432 222333221
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHH-hcCcEEEEEcCCCCh---hhhhhccCCCCC----CCCCcEEEEEcCcchhhh
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD----VHRGCKILVTSRRRDVLV 281 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~---~~~~~l~~~l~~----~~~gskIlvTTR~~~v~~ 281 (1622)
....+..+...+. ...||+|++||+.-. .....+...+.. ...+..|..||-.++...
T Consensus 90 ------------~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------------HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 1111223333333 358999999998644 223333333321 122344555665555544
No 175
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0087 Score=76.02 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHHHcCC---------CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 142 ESRESILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 142 ~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
..-..+++++++.|..+ -.+=+.++|++|+|||-||++++-...+- |++++.. +..
T Consensus 317 deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS--------EFv 381 (774)
T KOG0731|consen 317 DEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS--------EFV 381 (774)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--------HHH
Confidence 33445677777778732 24568899999999999999999887743 4555543 111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh-----------------hhhccCCCCCCCCCc--EEEEE
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-----------------LERTGIPFGDVHRGC--KILVT 273 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------------~~~l~~~l~~~~~gs--kIlvT 273 (1622)
+.+.. .....+..+...-+.....+|.+|+++...- ++.+..-......+. -+|-+
T Consensus 382 E~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 382 EMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred HHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 11111 1145566677777778889999998865421 111211122222223 23336
Q ss_pred cCcchhhhh---cCc-ccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 274 SRRRDVLVS---EMH-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 274 TR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
|...++.+. ..| -+..+.++.-+.....++|+.++.......+..++++ |+...-|.+=|.
T Consensus 457 tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 457 TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 666665544 122 2457888888899999999999965544445556666 888888877443
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.96 E-value=0.014 Score=74.18 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=94.5
Q ss_pred CccccccHHHHHHHHHHH---HcC---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH
Q 000354 137 GHEFIESRESILNDILDA---LRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1622)
....+.|.+..++++.++ +.. ...+-+.++|++|+|||++|+.++...... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH----
Confidence 344566766655554443 321 123458899999999999999999876421 232221
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh------------hh----hhccCCCC--CCCC
Q 000354 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFG--DVHR 266 (1622)
Q Consensus 205 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~----~~l~~~l~--~~~~ 266 (1622)
.++.... .+ . ....+..+.+........+|++||++... .+ ..+...+. ....
T Consensus 122 ~~~~~~~---~g-----~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEMF---VG-----V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHHH---hc-----c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111110 01 0 12233444444444677899999996531 01 11111111 1223
Q ss_pred CcEEEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 267 GCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 267 gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
+-.||.||......+..+ ..+..+.++..+.++-.++|+.++.......+ .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCC
Confidence 445666676544322211 23457889999999999999988754322211 1234778888774
No 177
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.90 E-value=0.034 Score=69.31 Aligned_cols=175 Identities=12% Similarity=0.095 Sum_probs=94.0
Q ss_pred ccccccHHHHHHHHHHHHc-------C---CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHH
Q 000354 138 HEFIESRESILNDILDALR-------G---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-------~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 207 (1622)
...+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++..... | +-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 3456677766665554211 1 234568899999999999999999987522 2 1122111 1
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh--------------hhhccCCCCCCCCCcEEEEE
Q 000354 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------------LERTGIPFGDVHRGCKILVT 273 (1622)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--------------~~~l~~~l~~~~~gskIlvT 273 (1622)
. ....+. ....+..+.+......+++|++|+++.... ...+...+.....+--||.|
T Consensus 296 ~--------~~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 F--------GGIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c--------ccccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 011111 122344444444456889999999975310 00011111112223345557
Q ss_pred cCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 274 SRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 274 TR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
|.+....+..+ .-+..+.++.-+.++-.++|+.+................+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 76554332211 235578899899999999999887432211100111345666666653
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.0014 Score=68.81 Aligned_cols=82 Identities=20% Similarity=0.402 Sum_probs=44.1
Q ss_pred CCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCC-CCCCcEEEccCCCCCC---ccccCCCCCCCEE
Q 000354 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-LPNLESLCLDQCILGD---IAIIGNLKNLEIL 585 (1622)
Q Consensus 510 ~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~Lr~L~L~~~~l~~---l~~i~~L~~L~~L 585 (1622)
.+...++|..|.+ ..++. |..++.|.+|.|.+|.|..+-+.+.. +++|..|.|.+|.|.. +..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccch-hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3445556665554 22222 45666666666666666655444433 3346666666665533 3445555566666
Q ss_pred EccCCCCcc
Q 000354 586 SLCCSDIEQ 594 (1622)
Q Consensus 586 ~Ls~~~i~~ 594 (1622)
.+-+|.+..
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 665555443
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.86 E-value=0.01 Score=63.10 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHcCCCeE-EEEEEeCCCccHHHHHHHHHHHhhccCC------------------cceEEEEEecCC--
Q 000354 143 SRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FDEVVFAEVSQT-- 201 (1622)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 201 (1622)
|.++..+.|...+..++.. .+.++|..|+||+++|..+++..--... ..-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777788787766655 6899999999999999999987642221 122334432222
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcch
Q 000354 202 -PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1622)
Q Consensus 202 -~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 278 (1622)
..++++. ++...+..... .+++-++|+||++.. +.++++...+.....++++|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333322 33333322211 246779999999875 566766666655567889999888775
Q ss_pred h-hhhcCcccceEEeccCC
Q 000354 279 V-LVSEMHCQNNYCVSVLN 296 (1622)
Q Consensus 279 v-~~~~~~~~~~~~l~~L~ 296 (1622)
- ...-......+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 3 22222234466666653
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.83 E-value=8.8e-05 Score=72.46 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCCCCEEEccCCCCcccchhhhcC-CCCCEEEccCCCCCCccCccccCCCCCCCEEEccCCcc
Q 000354 577 GNLKNLEILSLCCSDIEQLPREIGEL-TQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640 (1622)
Q Consensus 577 ~~L~~L~~L~Ls~~~i~~LP~~i~~L-~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1622)
...++|...+|++|.++.+|..+... +.+.+|++.+|. +.++|.+ +..++.|+.|+++.|.+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcc
Confidence 33444444444444444444443322 244445554443 4445544 44455555555544444
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.021 Score=68.08 Aligned_cols=146 Identities=23% Similarity=0.300 Sum_probs=88.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH--
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL-- 235 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-- 235 (1622)
.....+.+.|++|+|||+||.+++..-. |..+--++-.+.. +.++......+....
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi------------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI------------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc------------------CccHHHHHHHHHHHHHH
Confidence 3456778999999999999999987654 6544433221111 111222222222222
Q ss_pred -HhcCcEEEEEcCCCChhhhhhccCCCCC-------------CCCCcEEEE--EcCcchhhhhcCcc----cceEEeccC
Q 000354 236 -KREKKILVILDDIWTSLDLERTGIPFGD-------------VHRGCKILV--TSRRRDVLVSEMHC----QNNYCVSVL 295 (1622)
Q Consensus 236 -~~~kr~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gskIlv--TTR~~~v~~~~~~~----~~~~~l~~L 295 (1622)
-+..=-.||+||+....+|-.++..|.+ ..+|-|.+| ||-.+.|... |+- ...|.|+.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCcc
Confidence 2345678999999999888887765432 223555444 7777777774 553 347899999
Q ss_pred CH-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHh
Q 000354 296 NK-EEAWSLFSKVVGNCVEDPDLQTVAIQVANEC 328 (1622)
Q Consensus 296 ~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c 328 (1622)
+. ++..+.++..- ...+.+...++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 77777776532 122334444555555555
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.021 Score=68.27 Aligned_cols=145 Identities=10% Similarity=0.048 Sum_probs=90.2
Q ss_pred ccc-HHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccC--------------------CcceEEEEEe
Q 000354 141 IES-RESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVFAEV 198 (1622)
Q Consensus 141 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~wv~v 198 (1622)
++| .+..++.+...+..+++ ....++|+.|+||||+|+.+++..--.. |.|.. ++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecc
Confidence 455 67777888888775554 4679999999999999999988763211 11211 1111
Q ss_pred cCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEE
Q 000354 199 SQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1622)
Q Consensus 199 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlv 272 (1622)
.. .....+.+..+.+.+. .+++-++|+|+++.. +..+.+...+.....++.+|+
T Consensus 86 ~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 86 DG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 00 0112233344444332 256678999998765 345556555655556777777
Q ss_pred EcCcch-hhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 273 TSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 273 TTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
+|.+.. +...-......+++.+++.++..+.+.+
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 776543 2221223356899999999999888865
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.033 Score=63.94 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=109.8
Q ss_pred CCCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC
Q 000354 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1622)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (1622)
|...+..+-|-++.+++|.+... . +..+=|.++|++|.|||-||++|+++.... |+.|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 33445567788888888887764 1 345678999999999999999999987633 444333
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh-------------hhhh---ccCCCCC-
Q 000354 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLER---TGIPFGD- 263 (1622)
Q Consensus 201 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~---l~~~l~~- 263 (1622)
. +-+++- +|. ....+..+.+--++.....|.+|.++... --.. +...+..
T Consensus 219 S---ElVqKY----iGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S---ELVQKY----IGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H---HHHHHH----hcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 2 112222 221 22345555655666788999999986541 0111 1111211
Q ss_pred -CCCCcEEEEEcCcchhhhh---cCc-ccceEEeccCCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHhCCCh----
Q 000354 264 -VHRGCKILVTSRRRDVLVS---EMH-CQNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLP---- 332 (1622)
Q Consensus 264 -~~~gskIlvTTR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~glP---- 332 (1622)
....-|||..|-..++.+. ..| -+..++++.-+.+--.+.|+-++.. ...+-+++ .+++.+.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHH
Confidence 2345689998877766654 122 2457888755555566777766642 22333443 4556665553
Q ss_pred HHHHHHHHHhc
Q 000354 333 IAILTVARTLR 343 (1622)
Q Consensus 333 Lai~~ig~~L~ 343 (1622)
-||.+=|++++
T Consensus 362 kaictEAGm~A 372 (406)
T COG1222 362 KAICTEAGMFA 372 (406)
T ss_pred HHHHHHHhHHH
Confidence 44555566653
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.057 Score=63.47 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhccCCcce-------EEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 147 ILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-------VVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 147 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-------~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
..+.+.+.+..++ ...+-++|+.|+||+++|..++...-=.+.-+. .-++..+..+|...+ ...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 4455666665554 457899999999999999999886531110000 000000111111000 000
Q ss_pred C-CCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceE
Q 000354 219 F-CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1622)
Q Consensus 219 ~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~ 290 (1622)
. ...-..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+.....++.+|++|.+. .+...-......+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0 00112334444444432 256678999999865 45666666665555677777766654 4443223345688
Q ss_pred EeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 291 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
.+.+++.+++.+.+.+. |. . .+..+++.++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~-~~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQ-GI--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHc-CC--c------hHHHHHHHcCCCHHHHHHH
Confidence 99999999999988753 21 1 1356789999999876543
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.00047 Score=75.83 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=23.9
Q ss_pred cccccEEEEecCCCCCCCCChhhccCCCCccEEEeccCcccchh
Q 000354 809 FSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEI 852 (1622)
Q Consensus 809 ~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~L~~c~~L~~l 852 (1622)
+|.+-.|.+.. .++.++.+...+.++++|..|.+.+.+-...+
T Consensus 223 ~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 223 FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 44444444433 24444444455666777777777776655444
No 186
>PRK10536 hypothetical protein; Provisional
Probab=96.77 E-value=0.01 Score=66.46 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=42.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEE
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF 195 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w 195 (1622)
+..++.+|......++.++.+. .+|.+.|.+|+|||+||.+++.+.-....|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3445677888888888888654 48999999999999999999986432244655443
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.027 Score=67.51 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=79.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
....+.|||..|.|||.|++++++.......=..+++++ .+....+++..+.. +..+...+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 356899999999999999999999887432223455542 23333333333321 1111222222
Q ss_pred CcEEEEEcCCCChh---hhh-hccCCCCC-CCCCcEEEEEcCcc---------hhhhhcCcccceEEeccCCHHHHHHHH
Q 000354 239 KKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1622)
Q Consensus 239 kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gskIlvTTR~~---------~v~~~~~~~~~~~~l~~L~~~ea~~Lf 304 (1622)
.-=++++||++... .|+ .+...|.. ...|-.||+|++.. ++.. .+...-++++.+.+.+.....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHH
Confidence 23388999987642 222 22222211 12344899999643 2222 3556678999999999999999
Q ss_pred HHHh
Q 000354 305 SKVV 308 (1622)
Q Consensus 305 ~~~~ 308 (1622)
.+.+
T Consensus 254 ~kka 257 (408)
T COG0593 254 RKKA 257 (408)
T ss_pred HHHH
Confidence 9977
No 188
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.73 E-value=0.029 Score=65.92 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHcC----CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 143 SRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 143 gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
+|...+....+++.. ...+-+.|+|..|+|||.||.++++.... ..+ .+.++++ .+++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 555555555566542 23467999999999999999999999862 233 3556654 34555555544311
Q ss_pred CCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhh--ccCCC-CCC-CCCcEEEEEcC
Q 000354 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER--TGIPF-GDV-HRGCKILVTSR 275 (1622)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gskIlvTTR 275 (1622)
+ .....+.+ .+-=||||||+... .+|.. +...+ ... ..+-.+||||-
T Consensus 207 ----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 22333444 36679999999644 45643 32222 211 13445778875
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.014 Score=72.20 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=87.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
.-+.|+|+.|+|||+||+++++..... -..+++++ ...+...+...+... . ...+.+.+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~-----~---~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG-----E---MQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc-----h---HHHHHHHc--ccC
Confidence 468899999999999999999987632 23355554 233444454444321 1 11222222 245
Q ss_pred EEEEEcCCCChhh--h--hhccCCCCC-CCCCcEEEEEcCcc---------hhhhhcCcccceEEeccCCHHHHHHHHHH
Q 000354 241 ILVILDDIWTSLD--L--ERTGIPFGD-VHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1622)
Q Consensus 241 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gskIlvTTR~~---------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 306 (1622)
-+||+||+..... + +.+...+.. ...|..||+||... .+.. .+.....+.+.+++.++-..++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S-R~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS-RFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh-hhcCCeEEecCCCCHHHHHHHHHH
Confidence 5889999865421 1 122222111 11355788888642 1111 244456889999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 307 VVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 307 ~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
++.... ..--+++..-|++...|.
T Consensus 283 k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 884321 111244555566666543
No 190
>PRK08116 hypothetical protein; Validated
Probab=96.69 E-value=0.0035 Score=72.32 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=59.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.++|..|+|||.||.++++..... -..+++++ ..+++..|........ ......+.+.+. .-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~--~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV--NA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhc--CC
Confidence 458999999999999999999998643 34466665 3445555555443211 111223344443 23
Q ss_pred EEEEEcCCCC--hhhhhh--ccCCCCC-CCCCcEEEEEcCcc
Q 000354 241 ILVILDDIWT--SLDLER--TGIPFGD-VHRGCKILVTSRRR 277 (1622)
Q Consensus 241 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gskIlvTTR~~ 277 (1622)
=||||||+.. ..+|.. +...+.. ...|..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 334432 2211211 12455688998643
No 191
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.66 E-value=0.00014 Score=71.03 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCCccEEEecCCcCcccCccCCCC-CCCcEEEccCCCCCCc-cccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEcc
Q 000354 534 MPKLRVLVLTRMKLLTLPSSFCHL-PNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1622)
Q Consensus 534 l~~Lr~L~Ls~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~ 611 (1622)
..+|...+|++|.+..+|..|... +.+..|+|.+|.|.++ ..+..++.|+.|+++.|.+...|.-|..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 334444445555554444444322 2444555555555444 33555555555555555555556555556666666655
Q ss_pred CCCCCCccCcc
Q 000354 612 NCSKLKVIPPN 622 (1622)
Q Consensus 612 ~~~~l~~lp~~ 622 (1622)
++. +..+|-+
T Consensus 132 ~na-~~eid~d 141 (177)
T KOG4579|consen 132 ENA-RAEIDVD 141 (177)
T ss_pred CCc-cccCcHH
Confidence 544 4444443
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=96.59 E-value=0.0013 Score=70.28 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=28.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhcc-CCcceEEE
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 195 (1622)
.|.|+|++|+||||||+++++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999987643 45777776
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.59 E-value=0.13 Score=69.31 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHHHHcC---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 140 FIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++.... .-...+.++++.-.... .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~--~~~~~i~id~se~~~~~----~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD--SDDAMVRIDMSEFMEKH----S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--CCCcEEEEEhHHhhhhh----h
Confidence 467888888887777651 12357889999999999999999976531 11234555554322111 1
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhcc
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTG 258 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~ 258 (1622)
+.+-++.. ++....+....+...+.....-+|+|||+... +.+..+.
T Consensus 643 ~~~LiG~~-pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll 691 (857)
T PRK10865 643 VSRLVGAP-PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILL 691 (857)
T ss_pred HHHHhCCC-CcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHH
Confidence 11222321 11111111122334444445579999999854 3444443
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.05 Score=64.15 Aligned_cols=175 Identities=8% Similarity=0.060 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcc---e-----EEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD---E-----VVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
..+.+...+..+.+ ..+.+.|+.|+||+++|+.++...-=..... | +-++..+..+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 34556666665554 5788999999999999999998763111110 0 001111111111100 00
Q ss_pred CCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceE
Q 000354 218 NFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1622)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~ 290 (1622)
.....-..+.++.+.+.+. ++++-++|+|+++.. ...+.+...+.....++.+|++|.+. .+...-......+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0001123444555554443 257778999999876 45666666665555677777777765 3332222335689
Q ss_pred EeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 291 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
.+.+++.++..+.+.+..+. + ...+...+..++|.|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 99999999999988876432 1 112556778899999643
No 195
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.26 Score=58.95 Aligned_cols=182 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCC---------eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 145 ESILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 145 ~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
++.++++.+++...+ .|=-.++|++|.|||+++.++++... ||... +..+...+-.+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d--------- 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD--------- 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH---------
Confidence 445666666665321 24567999999999999999998876 55433 22221111111
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh-----------hh---------hccCCCC--CCCC-CcEEE-
Q 000354 216 GLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-----------LE---------RTGIPFG--DVHR-GCKIL- 271 (1622)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------~~---------~l~~~l~--~~~~-gskIl- 271 (1622)
+.+|+... ..+-+||+.|++-..+ .. -+.-.+. +... +-|||
T Consensus 277 ------------Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 277 ------------LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred ------------HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 22222111 3455556665543211 00 0100110 1112 33555
Q ss_pred EEcCcchhhhhc---Ccc-cceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHH-HHHHHhcCCC
Q 000354 272 VTSRRRDVLVSE---MHC-QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL-TVARTLRNKP 346 (1622)
Q Consensus 272 vTTR~~~v~~~~---~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~-~ig~~L~~~~ 346 (1622)
+||-..+..+.+ .|. +-.+.+.-=+.+....||..+.+...++. +..+|.+...|.-+.=. +.+.+|+++.
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~~ 418 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNKN 418 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhccc
Confidence 588777655541 222 33577777888999999999987544333 44555555555543333 4445556654
Q ss_pred chh--HHHHHHHHH
Q 000354 347 LFV--WKKALQELR 358 (1622)
Q Consensus 347 ~~~--w~~~l~~l~ 358 (1622)
+.. .+.+.+.+.
T Consensus 419 dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 419 DADVALKGLVEALE 432 (457)
T ss_pred cHHHHHHHHHHHHH
Confidence 322 555555554
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.094 Score=57.87 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=106.8
Q ss_pred HHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCCh--
Q 000354 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEESD-- 224 (1622)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~-- 224 (1622)
+..+...+ .++-+++.|+|.-|+|||.+++++...... +.++-|.+. ...+...+...|+..+..+ +....
T Consensus 40 l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~ 113 (269)
T COG3267 40 LLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNA 113 (269)
T ss_pred HHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHH
Confidence 33333333 455679999999999999999955544331 112223333 4456777888888888763 22211
Q ss_pred -HH-HHHHHHHHHHhcCc-EEEEEcCCCCh--hhhhhccCCCC---CCCCCcEEEEEcCcch-------hhhh-cCcccc
Q 000354 225 -SE-RIMMLCNRLKREKK-ILVILDDIWTS--LDLERTGIPFG---DVHRGCKILVTSRRRD-------VLVS-EMHCQN 288 (1622)
Q Consensus 225 -~~-~~~~l~~~l~~~kr-~LlVlDdv~~~--~~~~~l~~~l~---~~~~gskIlvTTR~~~-------v~~~-~~~~~~ 288 (1622)
.. ..+.+..-.++++| ..+++||..+. +..+.++.... +...--+|+..-..+- +... .....-
T Consensus 114 ~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 114 VLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 12 22334445556788 99999998654 23333221111 1111112333322110 1110 111222
Q ss_pred eEEeccCCHHHHHHHHHHHhCCCCC--CchhHHHHHHHHHHhCCChHHHHHHHH
Q 000354 289 NYCVSVLNKEEAWSLFSKVVGNCVE--DPDLQTVAIQVANECGGLPIAILTVAR 340 (1622)
Q Consensus 289 ~~~l~~L~~~ea~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~glPLai~~ig~ 340 (1622)
.|.+.|++.++...+++.+.+.... .--..+....|.....|.|.+|..++.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 3899999999999999888732211 111245677888999999999988774
No 197
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.059 Score=66.83 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=92.8
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
+-.|.+...++|++++. .-.-++++++|++|||||.+|+.++.... +.| +-++|+.-.|..+|-.-=-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhccccee
Confidence 45688888999998875 23457999999999999999999998775 223 23566666666554211000
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHh--cCcEEEEEcCCCChh---------hh---------hhccCCCCC-CCCCcEEEE
Q 000354 214 QLGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTSL---------DL---------ERTGIPFGD-VHRGCKILV 272 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~---------~~---------~~l~~~l~~-~~~gskIlv 272 (1622)
.+| ... -++.+.|++ ..+=|+.+|.|+..- .+ ..|...+.+ .-.=|||++
T Consensus 487 YVG------AMP---GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 487 YVG------AMP---GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eec------cCC---hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 011 111 124455543 466789999997651 11 111111111 112367776
Q ss_pred EcCcchhhh---hcCcccceEEeccCCHHHHHHHHHHHh
Q 000354 273 TSRRRDVLV---SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 273 TTR~~~v~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
...-..+.. ...+....|+|.+...+|-..+-..+.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 544332221 123446789999999998888777665
No 198
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0018 Score=71.41 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=10.9
Q ss_pred cCCCcceEEeccCccccccC
Q 000354 1284 KFPCLEDLFVIECPNMKIFS 1303 (1622)
Q Consensus 1284 ~l~sL~~L~I~~Cp~L~slp 1303 (1622)
.+|+|..|.+.+-|-...+.
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred CCchhheeeccCCccccccc
Confidence 45566666665555444443
No 199
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.49 E-value=0.0036 Score=65.87 Aligned_cols=104 Identities=28% Similarity=0.349 Sum_probs=58.3
Q ss_pred CCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchhhhc-CCCCCEEEccCCCCCCc---cCccccCCCCCCCEEE
Q 000354 559 NLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGE-LTQLKLLDLSNCSKLKV---IPPNVISSLSQLEELY 634 (1622)
Q Consensus 559 ~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~-L~~L~~L~L~~~~~l~~---lp~~~l~~L~~L~~L~ 634 (1622)
+...+||++|.+..+..+..+..|.+|.|..|.|+.+-..+.. +++|..|.|.+|+ +.. +.+ +..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceee
Confidence 3445566666666555666666666666666666665444433 4456666666654 333 222 45566666666
Q ss_pred ccCCccccccccccccccccChhhhCCCCCCCEEEEeec
Q 000354 635 LGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIR 673 (1622)
Q Consensus 635 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 673 (1622)
+-+|.+. .......-.+.++++|+.|+....
T Consensus 120 ll~Npv~--------~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVE--------HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchh--------cccCceeEEEEecCcceEeehhhh
Confidence 6666553 111223345566777777776543
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.43 E-value=0.017 Score=68.33 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=67.5
Q ss_pred HHHHHHHHcC-CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcce-EEEEEecCC-cCHHHHHHHHHHHhCCCCCCCCh
Q 000354 148 LNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQT-PDLKRIRREIADQLGLNFCEESD 224 (1622)
Q Consensus 148 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~ 224 (1622)
..++++.+.- ..-.-+.|+|..|+|||||++++++..... +-+. ++|+.+.+. .++.++++.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3457777652 223456999999999999999999887532 2344 467777654 46788888888877654332222
Q ss_pred HH------HHHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 225 SE------RIMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 225 ~~------~~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
.. .+....+++. ++++++||+|++-..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 22 1222333333 479999999998544
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.041 Score=70.77 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred ccccHHHHHHHHHHHHc---------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 140 FIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.++|.++.++.+.+.+. ..++.+...+|+.|||||.||++++...--. =+..+-+++|+-.....+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHsV--- 566 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHSV--- 566 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHHH---
Confidence 47899999999888876 2345678889999999999999999876311 144555555544332222
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
.+-+|.. ++--.-+..-.+-+.+++....+|.||+|...
T Consensus 567 -SrLIGaP-PGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 567 -SRLIGAP-PGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred -HHHhCCC-CCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 2223322 11100111223344554333448888999875
No 202
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.42 E-value=0.056 Score=72.42 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.++|.++.++.|.+++. .....++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36688888888887653 12345899999999999999999998875
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.41 E-value=0.018 Score=76.68 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHHHHcC---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 140 FIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.++|.+..++.+...+.. ....++.++|+.|+|||+||+.++.... ...+.++.++-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 456777777777777651 1345788999999999999999998763 3345566554322111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
+...++.. ++....+....+.+.+.....-+|+||+++..
T Consensus 526 ~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11222221 11111112223445555556679999999865
No 204
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.35 E-value=0.12 Score=61.82 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHH-HHHHHHhhccCCcceEEEEEecCC---cCHHHHHHHHHHHhCC--
Q 000354 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEVVFAEVSQT---PDLKRIRREIADQLGL-- 217 (1622)
Q Consensus 144 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~i~~~l~~-- 217 (1622)
|.+.+++|..||.+..-.+|.|.|+-|.||+.|+ .++..+.+ .+..|++.+- .+-...++.++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888899999999999999999 77765543 2566655432 2334444444444431
Q ss_pred ---------------------CCCC--CChHHHHHHHHH----HHHh-------------------------cCcEEEEE
Q 000354 218 ---------------------NFCE--ESDSERIMMLCN----RLKR-------------------------EKKILVIL 245 (1622)
Q Consensus 218 ---------------------~~~~--~~~~~~~~~l~~----~l~~-------------------------~kr~LlVl 245 (1622)
...+ .+....+..+++ .|++ ..|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1111 222222222221 1110 13668999
Q ss_pred cCCCCh-----------hhhhhccCCCCCCCCCcEEEEEcCcchhhhh---cC--cccceEEeccCCHHHHHHHHHHHhC
Q 000354 246 DDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS---EM--HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1622)
Q Consensus 246 Ddv~~~-----------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~---~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 309 (1622)
||.-.. .+|..... ..+=.+||++|-+...... .+ ...+.+.|.-.+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997543 24554322 1234579999987654443 22 3467889999999999999998885
Q ss_pred CCCCC-------------------chhHHHHHHHHHHhCCChHHHHHHHHHhcCCCc
Q 000354 310 NCVED-------------------PDLQTVAIQVANECGGLPIAILTVARTLRNKPL 347 (1622)
Q Consensus 310 ~~~~~-------------------~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~ 347 (1622)
..... .....-....++.+||=-.-+..+++.++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 32110 122334567788999999999999999987644
No 205
>PRK08181 transposase; Validated
Probab=96.28 E-value=0.0075 Score=69.19 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q 000354 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC 232 (1622)
Q Consensus 153 ~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (1622)
+|+. ...-+.|+|++|+|||.||..+++..... ...++|++ ..+++..+..... .. ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~----~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----EL----QLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CC----cHHHHH
Confidence 4554 23459999999999999999999877532 23456664 3445555543321 11 112233
Q ss_pred HHHHhcCcEEEEEcCCCCh--hhh-h-hccCCCCCCCCCcEEEEEcCcc
Q 000354 233 NRLKREKKILVILDDIWTS--LDL-E-RTGIPFGDVHRGCKILVTSRRR 277 (1622)
Q Consensus 233 ~~l~~~kr~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gskIlvTTR~~ 277 (1622)
+.+ .+--|||+||+... .+| . .+...+.....+..+||||...
T Consensus 163 ~~l--~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKL--DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHH--hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 344 25569999999644 122 1 2222222111123588888754
No 206
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.012 Score=73.27 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=91.3
Q ss_pred cccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000354 141 IESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 214 (1622)
-.|-++..++|++.|. +-+-.++++||++|+|||.|++.+++-.. +.| +-++++.-.|..+|.--=-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhccccccc
Confidence 4588888999998875 22346999999999999999999998876 334 234455555544432100000
Q ss_pred hCCCCCCCChHHHHHHHHHHHHh--cCcEEEEEcCCCChh------------------hhhhccCCCCC-CCCCcEEEE-
Q 000354 215 LGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTSL------------------DLERTGIPFGD-VHRGCKILV- 272 (1622)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~------------------~~~~l~~~l~~-~~~gskIlv- 272 (1622)
+| +... ++.+.+++ .++=+++||.++... +-.+|...+.. .-.=|+|++
T Consensus 400 IG------amPG---rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 400 IG------AMPG---KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cc------cCCh---HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 11 1111 23344433 477899999987651 11112111111 111245554
Q ss_pred EcCcc-h-hhhhcCcccceEEeccCCHHHHHHHHHHHh
Q 000354 273 TSRRR-D-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 273 TTR~~-~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
+|-|. + +....++...+|++.+.+++|-.+.-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33332 2 333245667899999999999999888776
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.26 E-value=0.075 Score=61.45 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHH
Q 000354 145 ESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 145 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 208 (1622)
...++++..++..+ +-|.++|.+|+|||++|+.+++... ...++++.....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34556666666543 2456899999999999999987442 224556666655555544
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.24 E-value=0.058 Score=72.09 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=96.7
Q ss_pred cccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHH
Q 000354 139 EFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1622)
..+.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+++++.... .| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEehH----
Confidence 445677777666665542 1 23456889999999999999999988752 22 222211
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh--------------hhhhccCCCCC--CCCCcE
Q 000354 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--------------DLERTGIPFGD--VHRGCK 269 (1622)
Q Consensus 206 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~gsk 269 (1622)
++ .. ...++ ....+..+.+........+|++|+++... ....+...+.. ...+--
T Consensus 522 ~l----~~----~~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LS----KWVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hh----cccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 11 11111 22344555555555778999999986431 01112111211 123444
Q ss_pred EEEEcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 270 ILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 270 IlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
||.||...+..+..+ ..+..+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 666776555443311 235678899999999999998776432221111 1346667777654
No 209
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.24 E-value=0.0088 Score=63.85 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=68.3
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
...+++|-++.++.+--...+.+.+-+.|.||+|+||||-+..+++..--...-+.+.-.+.|+...+.-+...|-.-..
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 34568899988888777777888999999999999999999999887753333356666666666555444333311100
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 217 LNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
. .-.+..++.-.||||..++.
T Consensus 105 ~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 K--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred h--------------hccCCCCceeEEEeeccchh
Confidence 0 00111356778999999876
No 210
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.23 E-value=0.0092 Score=66.55 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (1622)
.++|+|..|+||||++..+..... +.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 578899999999999999998876 67888887754
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.15 Score=60.53 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceEEeccCCH
Q 000354 225 SERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNK 297 (1622)
Q Consensus 225 ~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~~l~~L~~ 297 (1622)
.+.++.+.+.+. .+++-++|+|+++.. ...+.+...+....+++.+|++|.+. .+...-......+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 455555555543 256678899998865 56677766666666677666666554 44332233356899999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 000354 298 EEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1622)
Q Consensus 298 ~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~i 338 (1622)
++..+.+.+. +. ++ ...++..++|.|..+..+
T Consensus 194 ~~~~~~L~~~-~~----~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 194 EAAAAWLAAQ-GV----AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHHc-CC----Ch----HHHHHHHcCCCHHHHHHH
Confidence 9999998775 21 11 223577889999754433
No 212
>PHA00729 NTP-binding motif containing protein
Probab=96.18 E-value=0.025 Score=62.39 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.3
Q ss_pred HHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 150 DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 150 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
.+++.+...+...|.|.|.+|+||||||..++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555566689999999999999999999875
No 213
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.1 Score=63.75 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=88.9
Q ss_pred CccccccHHHHHHHHHHHHc---C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH
Q 000354 137 GHEFIESRESILNDILDALR---G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1622)
....+-|.+..+.++.+++. . ...+=|.++|++|.|||.||++++....+- ++.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 35567788888877777654 1 245678999999999999999999998743 3333322
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh---hh----------hhcc---CCCCC-CCCC
Q 000354 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---DL----------ERTG---IPFGD-VHRG 267 (1622)
Q Consensus 205 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~----------~~l~---~~l~~-~~~g 267 (1622)
+|...+.. ...+.++++...-...-.+++++|+++-.. +| ..+. .-+.. ...|
T Consensus 258 -----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 12222211 234556667766666789999999987541 11 1111 11111 1113
Q ss_pred cEEEE---EcCcchhhhh--cCc-ccceEEeccCCHHHHHHHHHHHh
Q 000354 268 CKILV---TSRRRDVLVS--EMH-CQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 268 skIlv---TTR~~~v~~~--~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
-.||| |+|-..+-.. .-| -++.|.+..-+.+.-.++++..+
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 22333 4443322111 122 24567787777777777777766
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.11 Score=62.09 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhccCCcc---e-----EEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 147 ILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD---E-----VVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 147 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
..+++...+..++ ...+.+.|+.|+||+++|..++...-=...-+ | .-++..+..+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 4566777776554 45788999999999999999988763110000 0 001111111111100 00
Q ss_pred CCC-CCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcch-hhhhcCcccce
Q 000354 218 NFC-EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNN 289 (1622)
Q Consensus 218 ~~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~-v~~~~~~~~~~ 289 (1622)
+.. ..-..+.++.+.+.+. .+++-++|+|+++.. ..-+.+...+.....++.+|++|.+.+ +...-......
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 000 0123444555555443 367789999998765 455666655655556777777776643 43322233557
Q ss_pred EEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHH
Q 000354 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1622)
Q Consensus 290 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 335 (1622)
+.+.+++.++..+.+....+. + .+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~----~--~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTM----S--QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCC----C--HHHHHHHHHHcCCCHHHH
Confidence 899999999999888654321 1 233668899999999644
No 215
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.16 E-value=0.062 Score=58.61 Aligned_cols=172 Identities=18% Similarity=0.253 Sum_probs=102.7
Q ss_pred ccccccHHHHHHH---HHHHHcCC------CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHH
Q 000354 138 HEFIESRESILND---ILDALRGP------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 138 ~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 208 (1622)
..+++|.++...+ |++.|.+. ..+-|..+|++|.|||.+|+++++..++- | +-| . ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l~v--k-------at 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---LLV--K-------AT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---EEe--c-------hH
Confidence 3456787766543 45566532 35789999999999999999999988742 1 111 1 11
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--------------hhhhhccCCCC--CCCCCcEEEE
Q 000354 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--------------LDLERTGIPFG--DVHRGCKILV 272 (1622)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~gskIlv 272 (1622)
+-|.+..| +....+.+++++-.+.-.+++.+|.++-. +..+++..-+. ..+.|-..|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 12222222 23456667777777789999999988654 11223322222 1345666666
Q ss_pred EcCcchhhhhcCcc--cceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 273 TSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 273 TTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
.|.+.+..+..+.. ...|+..--+++|-..++..++....-..+ .-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 77766665542222 345666677889999999988843221111 1144566666654
No 216
>PRK07261 topology modulation protein; Provisional
Probab=96.15 E-value=0.014 Score=62.58 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhcc-CCcceEEE
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 195 (1622)
.|.|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775421 23455555
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.11 Score=64.10 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
-.+|+|+|.+|+||||++.+++.....+.....+..++... .....+.++...+.++...........+....+.+ .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l--~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL--R 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--c
Confidence 46899999999999999999988765332223455554421 11122333333444444333323333344444444 2
Q ss_pred CcEEEEEcCCC
Q 000354 239 KKILVILDDIW 249 (1622)
Q Consensus 239 kr~LlVlDdv~ 249 (1622)
..-+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 45688888864
No 218
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.09 E-value=0.016 Score=77.65 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=61.8
Q ss_pred cccccHHHHHHHHHHHHc-------C--CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHH
Q 000354 139 EFIESRESILNDILDALR-------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 209 (1622)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...... .+..+-+++++-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 357799999998888874 1 234578999999999999999998876421 2223333333221111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
.+.+-++.. ++....+....+.+.+++...-+|+||++...
T Consensus 640 ~~~~l~g~~-~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSP-PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCC-CCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 111112221 11101111123445566667789999999765
No 219
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.02 E-value=0.014 Score=63.56 Aligned_cols=121 Identities=24% Similarity=0.237 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEec----CCcC--HHH-------HHHHHHH
Q 000354 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS----QTPD--LKR-------IRREIAD 213 (1622)
Q Consensus 147 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs----~~~~--~~~-------i~~~i~~ 213 (1622)
+-...++.|. ...+|.+.|++|.|||.||.+.+-+.-....|+.++++.-. +... +-+ ...-+.+
T Consensus 8 ~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 8 EQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp HHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred HHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 3344555555 44589999999999999999999776556889988876321 1110 000 1111222
Q ss_pred HhCCCCCCCChHHHHHHHHH----------HHHhc---CcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc
Q 000354 214 QLGLNFCEESDSERIMMLCN----------RLKRE---KKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR 277 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~----------~l~~~---kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~ 277 (1622)
.+..-..... .+.+.+ .+ +| .+..||+|++.+. +++..+... .+.|||||++=-..
T Consensus 86 ~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i-RGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 86 ALEELFGKEK----LEELIQNGKIEIEPLAFI-RGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHTTTS-TTC----HHHHHHTTSEEEEEGGGG-TT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHhChHh----HHHHhhcCeEEEEehhhh-cCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 2222111111 111111 11 12 5679999999876 577777554 35799999886544
No 220
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.02 Score=68.24 Aligned_cols=91 Identities=23% Similarity=0.273 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHHHHcCC--------C-eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 141 IESRESILNDILDALRGP--------Y-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
+..-..++++|+++|.+. + .+=|.++|++|.|||-||++|+-...+- +|...+..|+.-
T Consensus 309 ~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm------ 376 (752)
T KOG0734|consen 309 VDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEM------ 376 (752)
T ss_pred hHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhh------
Confidence 334456788999999853 1 3568899999999999999999877643 233333343321
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
.- | ....++..+...-+..-.++|.+|.++..
T Consensus 377 ~V--G------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 377 FV--G------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hh--c------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 1 12345666777776678899999998754
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.01 E-value=0.048 Score=72.88 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=94.3
Q ss_pred ccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH
Q 000354 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1622)
..++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.... .| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecH-----
Confidence 3457799988888877653 1 23456889999999999999999987642 12 222211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh-------------hhhhccCCCCC-CCCCcEE
Q 000354 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERTGIPFGD-VHRGCKI 270 (1622)
Q Consensus 205 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~gskI 270 (1622)
++... ..+ .....+..+.+........+|++|+++... ....+...+.. ...+..+
T Consensus 247 -~i~~~--------~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMSK--------YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhcc--------ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11100 001 112234444544445667899999986431 01112111111 1223344
Q ss_pred EE-EcCcchhhhhcC----cccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChH
Q 000354 271 LV-TSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1622)
Q Consensus 271 lv-TTR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPL 333 (1622)
|| ||....-....+ .-...+.+...+.++-.++++.+........ ......+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 44 444332111111 1234678888888888888887663322111 1124567778877653
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.98 E-value=0.2 Score=62.46 Aligned_cols=168 Identities=19% Similarity=0.186 Sum_probs=101.0
Q ss_pred ccccccHHHHHHHHHHHHc----C-CCeEEEEEEeCCCccHHHHHHHHHHHhh---cc---CCcceEEEEEecCCcCHHH
Q 000354 138 HEFIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAK---EG---RIFDEVVFAEVSQTPDLKR 206 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~---~~F~~~~wv~vs~~~~~~~ 206 (1622)
+..+.+|+.+..+|.+.+. + ..-..+.|.|.+|+|||..+..|.+... .+ ..|+ .+.|+.-.-....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 4456789999999998876 3 3445899999999999999999998554 12 2343 34455556667999
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCChhh--hhhccCCCCC-CCCCcEEEEEcCc--c
Q 000354 207 IRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSLD--LERTGIPFGD-VHRGCKILVTSRR--R 277 (1622)
Q Consensus 207 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gskIlvTTR~--~ 277 (1622)
++..|...+..... ......+.+..++. ..+..+|++|+++..-. -+-+.-.|.| ..++||++|.+=. .
T Consensus 474 ~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 474 IYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 99999999876533 23333444444443 24668899998865411 1111111222 3467887775421 1
Q ss_pred hhhhhcC-------cccceEEeccCCHHHHHHHHHHHh
Q 000354 278 DVLVSEM-------HCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 278 ~v~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
+...+.+ -....+...+.++++--+....+.
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 1111100 012345556666666555555544
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.96 E-value=0.04 Score=60.41 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=55.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFC----EESDSERIMMLCNRL 235 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 235 (1622)
+||.++|+.|+||||.+-+++.....+ -..+..|+... .....+-++..++.++.... ..+..+......+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999888744 34566676532 23456667788888886532 223344444444444
Q ss_pred HhcCcEEEEEcCC
Q 000354 236 KREKKILVILDDI 248 (1622)
Q Consensus 236 ~~~kr~LlVlDdv 248 (1622)
..++.=+|++|=.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 4344568888865
No 224
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.014 Score=67.18 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=44.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
....+.++|..|+|||+||.++++....+. -..++++.. .+++..+...+ +......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 356799999999999999999999875321 244666654 23333332221 1112223333 3
Q ss_pred CcEEEEEcCC
Q 000354 239 KKILVILDDI 248 (1622)
Q Consensus 239 kr~LlVlDdv 248 (1622)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 5679999999
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.93 E-value=0.04 Score=63.30 Aligned_cols=130 Identities=20% Similarity=0.242 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHH-HhhccCCcceEEE----EEecCCcC------HHH---
Q 000354 141 IESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVAR-LAKEGRIFDEVVF----AEVSQTPD------LKR--- 206 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~-~~~~~~~F~~~~w----v~vs~~~~------~~~--- 206 (1622)
+-+|..+-.--+++|.++++..|.+.|.+|.|||-||.+..= ...+++.|+.++- +.+++... .++
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 345666655567788899999999999999999999988763 3344566765442 23333221 111
Q ss_pred HHHHHHHHh----CCCCCCCChHHHHHHHHH----------HHHhc---CcEEEEEcCCCCh--hhhhhccCCCCCCCCC
Q 000354 207 IRREIADQL----GLNFCEESDSERIMMLCN----------RLKRE---KKILVILDDIWTS--LDLERTGIPFGDVHRG 267 (1622)
Q Consensus 207 i~~~i~~~l----~~~~~~~~~~~~~~~l~~----------~l~~~---kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 267 (1622)
=.+.|.+.+ ..+... ...++.+.. .+ ++ .+-+||+|...+. .+...+.. ..+.|
T Consensus 306 Wmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~I-RGRSl~~~FiIIDEaQNLTpheikTilt---R~G~G 378 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYI-RGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEG 378 (436)
T ss_pred hHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeee-cccccccceEEEehhhccCHHHHHHHHH---hccCC
Confidence 111222221 111111 222222211 11 12 4568999999887 35555543 45789
Q ss_pred cEEEEEcCcc
Q 000354 268 CKILVTSRRR 277 (1622)
Q Consensus 268 skIlvTTR~~ 277 (1622)
|||+.|---.
T Consensus 379 sKIVl~gd~a 388 (436)
T COG1875 379 SKIVLTGDPA 388 (436)
T ss_pred CEEEEcCCHH
Confidence 9999876433
No 226
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.87 E-value=0.058 Score=71.51 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=86.6
Q ss_pred cccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 139 EFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
...+|.++.+++|+.+|. .....++.++|++|+||||+|+.++.... ..| +-++++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchh
Confidence 346788899999988775 12446899999999999999999998664 223 2233444334333221111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHh--cCcEEEEEcCCCChhh------hhhccCCCCC---------------CCCCcE
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTSLD------LERTGIPFGD---------------VHRGCK 269 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~gsk 269 (1622)
...+. .. . .+.+.+.. ..+-+|+||.++.... ...+...+.. .-.+.-
T Consensus 397 ~~~g~-----~~-G---~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGS-----MP-G---KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCC-----CC-c---HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 11110 01 1 12222222 2445789999865421 1222211111 112333
Q ss_pred EEEEcCcchhhhhcCcccceEEeccCCHHHHHHHHHHHh
Q 000354 270 ILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 270 IlvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
+|.|+....+.....+....+.+.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444554444333333445688999999999888887765
No 227
>PRK12377 putative replication protein; Provisional
Probab=95.85 E-value=0.042 Score=62.33 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
+...+.|+|..|+|||+||.++++..... ...++++++. +++..|....... . ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHh--c
Confidence 34679999999999999999999988632 3446676543 4454554433211 1 112334444 4
Q ss_pred CcEEEEEcCCCC
Q 000354 239 KKILVILDDIWT 250 (1622)
Q Consensus 239 kr~LlVlDdv~~ 250 (1622)
+--|||+||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 777999999944
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.041 Score=66.17 Aligned_cols=139 Identities=13% Similarity=0.073 Sum_probs=83.8
Q ss_pred cccHHHHHHHHHHHHc-CCCeE-EEEEEeCCCccHHHHHHHHHHHhhccC-------------------CcceEEEEEec
Q 000354 141 IESRESILNDILDALR-GPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFAEVS 199 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~-~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs 199 (1622)
+++-+....++..+.. ..+.. .+.++|+.|+||||+|..+++..--.. ...-+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4555666777777766 33344 599999999999999999999875221 12345555555
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEc
Q 000354 200 QTPD---LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1622)
Q Consensus 200 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTT 274 (1622)
+... ..+..+++.+....... .++.-++|+|+++.. +.-..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 5544 34444444444433211 267889999999876 33444444444455677888888
Q ss_pred Ccch-hhhhcCcccceEEeccC
Q 000354 275 RRRD-VLVSEMHCQNNYCVSVL 295 (1622)
Q Consensus 275 R~~~-v~~~~~~~~~~~~l~~L 295 (1622)
.... +...-......+++.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred CChhhccchhhhcceeeecCCc
Confidence 7432 22211222345666663
No 229
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.00044 Score=75.42 Aligned_cols=106 Identities=28% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCCCcEEEccCCCCCCccccCCCCCCCEEEccCCCCcccchhhhcCCCCCEEEccCCCCCCccCcc-ccCCCCCCCEEEc
Q 000354 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPN-VISSLSQLEELYL 635 (1622)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~-~l~~L~~L~~L~l 635 (1622)
|.+.+.|++.||.+.+|..+.+++.|++|.||-|+|+.|- .+..+++|+.|+|..|. |..+..- -+.+|++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4566778888888888888888888899998888888874 47788888888888876 5555431 1567888888888
Q ss_pred cCCccccccccccccccccChhhhCCCCCCCEEEE
Q 000354 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEI 670 (1622)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 670 (1622)
..|...+..+ .+.....|.-|++|+.|+-
T Consensus 96 ~ENPCc~~ag------~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAG------QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccc------hhHHHHHHHHcccchhccC
Confidence 8876542211 1233456777888888763
No 230
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.80 E-value=0.3 Score=54.26 Aligned_cols=227 Identities=16% Similarity=0.130 Sum_probs=123.2
Q ss_pred ccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhc----cCCcceEEEEEecCC----------c---
Q 000354 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQT----------P--- 202 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~----------~--- 202 (1622)
.+.++++...++.......+..-..++|+.|.||-|.+..+.+..-- +-.-+..-|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35667777777777665667888999999999999988888876531 112234445433222 1
Q ss_pred --------CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcE-EEEEcCCCCh--hhhhhccCCCCCCCCCcEEE
Q 000354 203 --------DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS--LDLERTGIPFGDVHRGCKIL 271 (1622)
Q Consensus 203 --------~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~~~gskIl 271 (1622)
.-+-+.++|++.+.-..+-+ ....+.| ++|+-.+++. ++-.+++.........+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 12234444444433211100 0012334 5555656554 33333333222234566777
Q ss_pred EEcCcc--hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCC-CCCchhHHHHHHHHHHhCCChHHHHHHHHHhc--CC-
Q 000354 272 VTSRRR--DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNC-VEDPDLQTVAIQVANECGGLPIAILTVARTLR--NK- 345 (1622)
Q Consensus 272 vTTR~~--~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~--~~- 345 (1622)
+..-.- -+.. -....-.+++...+++|-...+.+.+..+ ..-+ ++++.+|+++++|.---...+-..++ +.
T Consensus 162 l~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 162 LVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 633221 1111 11223468899999999999999888422 2222 67899999999886543333333332 11
Q ss_pred --------CchhHHHHHHHHHhhccCCCChHHHHHHHHHHHhhcC
Q 000354 346 --------PLFVWKKALQELRFSARNFTGLEALLGSTIELIYNYL 382 (1622)
Q Consensus 346 --------~~~~w~~~l~~l~~~~~~~~~~~~i~~~~l~~sy~~L 382 (1622)
+..+|+.++.++.........-..++ .+-..-|+-|
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~-~vR~~LYeLL 282 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQSPAKLL-EVRGRLYELL 282 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHH
Confidence 23449999998875433333333333 3334444433
No 231
>PRK06526 transposase; Provisional
Probab=95.78 E-value=0.014 Score=66.67 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=43.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1622)
..-+.|+|++|+|||+||..+....... .+. +.|+ +..++...+..... .. ........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAHH----AG----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHh--cc
Confidence 3468999999999999999999876532 232 3443 33344444433211 11 111122233 34
Q ss_pred cEEEEEcCCCCh
Q 000354 240 KILVILDDIWTS 251 (1622)
Q Consensus 240 r~LlVlDdv~~~ 251 (1622)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 569999999753
No 232
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.2 Score=62.18 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=80.9
Q ss_pred ccccccHHHHHHHHHHHHc------------C-CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH
Q 000354 138 HEFIESRESILNDILDALR------------G-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~------------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1622)
-..+-|.++.+.+|-+... . ...+-|.++|++|.|||++|+++++..... | +.|...
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH---
Confidence 3445566665555554432 1 456789999999999999999999988733 3 333221
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhh-------------hhhccCCCCCCCCCcEEE
Q 000354 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-------------LERTGIPFGDVHRGCKIL 271 (1622)
Q Consensus 205 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gskIl 271 (1622)
+++.. +.++ ....+..+.+.-++-...+|.||.++.... +..+..-+........|+
T Consensus 503 -EL~sk--------~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -ELFSK--------YVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -HHHHH--------hcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 11100 1111 223344444444445668888887765411 111111111111122233
Q ss_pred E---EcCcchhhhhcCc---ccceEEeccCCHHHHHHHHHHHhCC
Q 000354 272 V---TSRRRDVLVSEMH---CQNNYCVSVLNKEEAWSLFSKVVGN 310 (1622)
Q Consensus 272 v---TTR~~~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~ 310 (1622)
| |-|...+-...+. .+..+.++.-+.+--.++|+.++..
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3 3333322222233 3556777777777778899998853
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.76 E-value=0.017 Score=62.30 Aligned_cols=75 Identities=29% Similarity=0.345 Sum_probs=45.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
...-+.++|..|+|||.||..+++.... ..+ .+.|++ ..+++..+-. ...... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~------~~~L~~~l~~----~~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFIT------ASDLLDELKQ----SRSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEE------HHHHHHHHHC----CHCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEee------cCceeccccc----cccccc----hhhhcCccc--
Confidence 3457999999999999999999987753 223 356664 3444444432 211111 223445553
Q ss_pred CcEEEEEcCCCCh
Q 000354 239 KKILVILDDIWTS 251 (1622)
Q Consensus 239 kr~LlVlDdv~~~ 251 (1622)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 5568899998654
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.74 E-value=0.034 Score=75.14 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=65.1
Q ss_pred ccccHHHHHHHHHHHHcC------C---CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 140 FIESRESILNDILDALRG------P---YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+....... -...+.++++.-.+...+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH---
Confidence 477888888888888752 1 24578899999999999999999876421 233445555543321111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccC
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGI 259 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~ 259 (1622)
...++.. ++--..+....+...+.+....+|+||++... +.++.+..
T Consensus 641 -~~l~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~ 689 (852)
T TIGR03346 641 -ARLIGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQ 689 (852)
T ss_pred -HHhcCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHH
Confidence 1112211 11000011123344444455569999999865 34444443
No 235
>PRK04132 replication factor C small subunit; Provisional
Probab=95.73 E-value=0.14 Score=67.43 Aligned_cols=154 Identities=9% Similarity=-0.000 Sum_probs=95.4
Q ss_pred CCCccHHHHHHHHHHHhhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEc
Q 000354 168 MAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILD 246 (1622)
Q Consensus 168 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlD 246 (1622)
+.++||||+|..++++.-- +.+ ..++-++.++......+. +++..+....+ +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 6799999999999988632 122 246778888766655443 33332211100 001256799999
Q ss_pred CCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHH
Q 000354 247 DIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQ 323 (1622)
Q Consensus 247 dv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 323 (1622)
+++.. ++.+.+...+......+++|++|.+. .+...-...+..+++.+++.++-...+...+....- .-.++....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 99876 35666655554444566676666554 333222233568999999999998888876632111 112456789
Q ss_pred HHHHhCCChHHHHHH
Q 000354 324 VANECGGLPIAILTV 338 (1622)
Q Consensus 324 I~~~c~glPLai~~i 338 (1622)
|++.++|-+..+..+
T Consensus 717 Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 717 ILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999988544433
No 236
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.73 E-value=0.034 Score=62.04 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
-.++.|+|.+|+|||++|.+++..... .-..++||+... ++..++.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHHH
Confidence 468999999999999999999877652 246789999876 666655543
No 237
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.70 E-value=0.039 Score=74.32 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=64.8
Q ss_pred cccccHHHHHHHHHHHHc-------C--CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHH
Q 000354 139 EFIESRESILNDILDALR-------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 209 (1622)
..++|.+..++.+...+. + ....++.++|+.|+|||+||+.+++..--. -...+-++.++-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHH-
Confidence 456788888888887765 1 123467799999999999999999876311 1234444554432221111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCC
Q 000354 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIP 260 (1622)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~ 260 (1622)
..++.. ++-...+....+.+.+.....-+|+||+++.. +.++.+...
T Consensus 586 ---~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~ 634 (821)
T CHL00095 586 ---KLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQI 634 (821)
T ss_pred ---HhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHH
Confidence 112211 11001111123445555555679999999865 334444433
No 238
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.63 E-value=0.0057 Score=67.35 Aligned_cols=79 Identities=29% Similarity=0.337 Sum_probs=33.0
Q ss_pred CCcEEEccCCCCCCccccCCCCCCCEEEccCC--CCc-ccchhhhcCCCCCEEEccCCCCCC---ccCccccCCCCCCCE
Q 000354 559 NLESLCLDQCILGDIAIIGNLKNLEILSLCCS--DIE-QLPREIGELTQLKLLDLSNCSKLK---VIPPNVISSLSQLEE 632 (1622)
Q Consensus 559 ~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~--~i~-~LP~~i~~L~~L~~L~L~~~~~l~---~lp~~~l~~L~~L~~ 632 (1622)
.|+.|++.++.++.+..+-.|++|++|.++.| .+. .++....++++|++|++++|+ ++ .+++ +..+.+|..
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELENLKS 120 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcchhh
Confidence 33344444444444444444444444444444 222 333333334555555555443 22 2222 334444445
Q ss_pred EEccCCcc
Q 000354 633 LYLGNTSV 640 (1622)
Q Consensus 633 L~l~~~~~ 640 (1622)
|++.+|..
T Consensus 121 Ldl~n~~~ 128 (260)
T KOG2739|consen 121 LDLFNCSV 128 (260)
T ss_pred hhcccCCc
Confidence 55544443
No 239
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.63 E-value=0.014 Score=68.60 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.++|.++.++++++++. +...+++.++|++|+||||||..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58899999999999886 234679999999999999999999998753
No 240
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.61 E-value=0.086 Score=61.55 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=50.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
..++|+|+|++|+||||++..++.....+..-..+..|+.... ....+.+....+.++...........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3569999999999999999999987753311124555554321 12233444445555554433333333344444442
Q ss_pred cCcEEEEEcCC
Q 000354 238 EKKILVILDDI 248 (1622)
Q Consensus 238 ~kr~LlVlDdv 248 (1622)
..=+||+|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3457777754
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.59 E-value=0.011 Score=59.49 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|+|.|++|+||||+|+++++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 242
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.54 E-value=0.0035 Score=68.36 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=54.4
Q ss_pred CCCccEEEecCCcCc-----ccCccCCCCCCCcEEEccCCCCCC-----------c-cccCCCCCCCEEEccCCCCc-cc
Q 000354 534 MPKLRVLVLTRMKLL-----TLPSSFCHLPNLESLCLDQCILGD-----------I-AIIGNLKNLEILSLCCSDIE-QL 595 (1622)
Q Consensus 534 l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----------l-~~i~~L~~L~~L~Ls~~~i~-~L 595 (1622)
+..+..++||+|.|. .+...|.+-.+|++.++++-..+. + +.+-++++|+..+||.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455555555555553 233344445555555555432211 1 34556666666666666544 23
Q ss_pred ch----hhhcCCCCCEEEccCCCCCCccCcccc-------------CCCCCCCEEEccCCccc
Q 000354 596 PR----EIGELTQLKLLDLSNCSKLKVIPPNVI-------------SSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 596 P~----~i~~L~~L~~L~L~~~~~l~~lp~~~l-------------~~L~~L~~L~l~~~~~~ 641 (1622)
|. -|+.-+.|.||.+++|. ++.+..+-| .+-+.|+......|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 32 34555667777776665 444332222 23455666666555543
No 243
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.53 E-value=0.036 Score=63.19 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=54.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CCh-
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ESD- 224 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~- 224 (1622)
-.++.|+|.+|+|||++|.+++........ -..++|++....++..++.+ +++..+..... .+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999865432221 36799999888777655543 33443322110 011
Q ss_pred --HHHHHHHHHHHHhc-CcEEEEEcCCCC
Q 000354 225 --SERIMMLCNRLKRE-KKILVILDDIWT 250 (1622)
Q Consensus 225 --~~~~~~l~~~l~~~-kr~LlVlDdv~~ 250 (1622)
......+.+.+.+. +--+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11223333444444 667888888753
No 244
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.53 E-value=0.21 Score=58.57 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=25.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
...+.++|||++|.|||.+|+++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 44678999999999999999999999864
No 245
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.53 E-value=0.035 Score=72.87 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=60.1
Q ss_pred ccccHHHHHHHHHHHHc---------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 140 FIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.++|.++.++.|...+. +.....+.++|+.|+|||++|+.++.... ...+.+++++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccc----c
Confidence 46788888888887765 12245789999999999999999988773 123444544332211 1
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
+.+-++.. ++....+....+.+.+.+...-+|+||+++..
T Consensus 530 ~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 22222322 11000111112334454456679999999876
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.052 Score=67.13 Aligned_cols=188 Identities=11% Similarity=0.134 Sum_probs=111.3
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH-
Q 000354 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ- 214 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~- 214 (1622)
....++|.+.....|...+..++. ..-...|+-|+||||+|+-++...-=.. |. ..+.+..=..-++|...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~~-~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------GP-TAEPCGKCISCKEINEGS 86 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------CC-CCCcchhhhhhHhhhcCC
Confidence 455678999988888888875443 4567899999999999999998663111 00 00011000011122111
Q ss_pred ----hCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCc-chhhhhc
Q 000354 215 ----LGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSE 283 (1622)
Q Consensus 215 ----l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~-~~v~~~~ 283 (1622)
+.++.-.....+.++.+.+... +++.-+.|+|+|.-. ..|+++..-+...-..-+.|+.|++ ..+...-
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 1111111233445555555543 256678999998654 5788877766554455555555544 4444433
Q ss_pred CcccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 284 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
......|.++.++.++-...+...+..+.-. ..++...-|++...|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCc-cCHHHHHHHHHHcCCCh
Confidence 4456789999999998888888877532222 12344556667666654
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.48 E-value=0.55 Score=57.31 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=24.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+|.++|..|+||||+|.+++...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998776
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.094 Score=64.99 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=87.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
.-|.|.|..|+|||+||+++++... ++..-.+.+|+.+.- ...+.+++.+..-+. +.+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs----------------e~~-~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS----------------EAL-WY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHH----------------HHH-hh
Confidence 4688999999999999999999887 455556666766533 234444444422221 122 35
Q ss_pred CcEEEEEcCCCChh--------hhhh----ccCCCC-----CCCCCc--EEEEEcCcchhhhh----cCcccceEEeccC
Q 000354 239 KKILVILDDIWTSL--------DLER----TGIPFG-----DVHRGC--KILVTSRRRDVLVS----EMHCQNNYCVSVL 295 (1622)
Q Consensus 239 kr~LlVlDdv~~~~--------~~~~----l~~~l~-----~~~~gs--kIlvTTR~~~v~~~----~~~~~~~~~l~~L 295 (1622)
..-+|||||++-.. +|.. +...+. ....+. ++|.|.....-... ..-...++.+..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 78899999986431 1211 100110 012233 34445544333222 1222446788889
Q ss_pred CHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC-hHHHHHH
Q 000354 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL-PIAILTV 338 (1622)
Q Consensus 296 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~i 338 (1622)
...+--++++........ ....+...-++.+|+|. |.-+.++
T Consensus 574 ~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 888888887776632221 11122233377777764 4444443
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=95.46 E-value=0.032 Score=64.12 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+.|+|+.|+|||+||..++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999987754
No 250
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.13 Score=62.75 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=82.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1622)
..=|.+||++|.|||-||++|++..... |++|-.. +++.. ..| .....+..+.++-+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNk---YVG------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNK---YVG------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHH---Hhh------hHHHHHHHHHHHhhcCC
Confidence 3457899999999999999999998743 4444332 12211 122 12345666777777789
Q ss_pred cEEEEEcCCCChh-------h------hhhccCCCCC--CCCCcEEEEEcCcchhhhhc---Cc-ccceEEeccCCHHHH
Q 000354 240 KILVILDDIWTSL-------D------LERTGIPFGD--VHRGCKILVTSRRRDVLVSE---MH-CQNNYCVSVLNKEEA 300 (1622)
Q Consensus 240 r~LlVlDdv~~~~-------~------~~~l~~~l~~--~~~gskIlvTTR~~~v~~~~---~~-~~~~~~l~~L~~~ea 300 (1622)
.+.|.||.++... . .+.+..-+.. ...|--||-.|-..++.+.+ -| -+...-|+.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999987541 1 1222222221 23455666666666555431 22 245777888889999
Q ss_pred HHHHHHHhC
Q 000354 301 WSLFSKVVG 309 (1622)
Q Consensus 301 ~~Lf~~~~~ 309 (1622)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999998885
No 251
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.39 E-value=0.028 Score=69.79 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=56.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
.-+++-+.|++|+||||||..++++.- | .++-|++|+.-+...+-..|...+........ .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------ds 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------CC
Confidence 467999999999999999999998775 2 37789999998888777777665543211100 25
Q ss_pred CcEEEEEcCCCCh
Q 000354 239 KKILVILDDIWTS 251 (1622)
Q Consensus 239 kr~LlVlDdv~~~ 251 (1622)
+..-||+|.++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7788899988765
No 252
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.31 Score=54.41 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=81.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
..+-|.++|++|.||+.||++|+.... ..|++||...-+. .. +| .....+..+.+--+++
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSDLvS----KW---mG------ESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSDLVS----KW---MG------ESEKLVKNLFEMAREN 224 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHHHHH----HH---hc------cHHHHHHHHHHHHHhc
Confidence 467899999999999999999998765 1245555442111 11 11 1234455566666678
Q ss_pred CcEEEEEcCCCCh---------hhhhhccC----CC---CCCCCCcEEEEEcCcchhhhhcCc--ccceEEeccCCHHHH
Q 000354 239 KKILVILDDIWTS---------LDLERTGI----PF---GDVHRGCKILVTSRRRDVLVSEMH--CQNNYCVSVLNKEEA 300 (1622)
Q Consensus 239 kr~LlVlDdv~~~---------~~~~~l~~----~l---~~~~~gskIlvTTR~~~v~~~~~~--~~~~~~l~~L~~~ea 300 (1622)
|.-+|.+|.|+.. +.-..|.. .. .....|.-||-.|...-+.+.++. -...|-+ ||.+..|
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~A 303 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHA 303 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHH
Confidence 9999999998754 11111211 11 112334445556665544443111 1122222 4555555
Q ss_pred H-HHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 301 W-SLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 301 ~-~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
. .+|+-++|+.... -.+.-.++++++..|.
T Consensus 304 R~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHV-LTEQDFKELARKTEGY 334 (439)
T ss_pred hhhhheeccCCCccc-cchhhHHHHHhhcCCC
Confidence 5 5677677764432 2233345555655543
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.33 E-value=0.088 Score=59.60 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcC--CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC
Q 000354 144 RESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE 221 (1622)
Q Consensus 144 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 221 (1622)
....+..+.++..+ .....+.++|.+|+|||+||.++++..... -..+++++ ..++...+-.... . ..
T Consensus 81 q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~~ 150 (244)
T PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-SE 150 (244)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-cc
Confidence 33445555555542 234578999999999999999999987632 24556664 3445555444332 1 11
Q ss_pred CChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 222 ESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 222 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
. ....+.+.+. +.=+||+||+...
T Consensus 151 ~----~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 T----SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred c----cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1 1223444453 4558899998654
No 254
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.31 E-value=0.39 Score=59.11 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=50.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCCC----ChHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCEE----SDSERIMMLC 232 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~----~~~~~~~~l~ 232 (1622)
...+|.++|.+|+||||+|..++...... .+ .+..|+.. .+. ..+.++.++.+++...... +....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887633 23 33444432 222 3445566677766543321 1222233333
Q ss_pred HHHHhcCcEEEEEcCCC
Q 000354 233 NRLKREKKILVILDDIW 249 (1622)
Q Consensus 233 ~~l~~~kr~LlVlDdv~ 249 (1622)
+... ..-+||+|..-
T Consensus 171 ~~~~--~~DvVIIDTAG 185 (437)
T PRK00771 171 EKFK--KADVIIVDTAG 185 (437)
T ss_pred HHhh--cCCEEEEECCC
Confidence 3332 23578888763
No 255
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.30 E-value=0.065 Score=62.85 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=54.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1622)
.-+++-|+|++|+||||||.+++...... -..++||+..+.++.. .+++++.+.. .....+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999988776522 3557899887766653 3455554321 122233333333
Q ss_pred HHHHhcCcEEEEEcCCCC
Q 000354 233 NRLKREKKILVILDDIWT 250 (1622)
Q Consensus 233 ~~l~~~kr~LlVlDdv~~ 250 (1622)
..+..+.--+||+|.|-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345677999999754
No 256
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.0084 Score=66.05 Aligned_cols=99 Identities=33% Similarity=0.479 Sum_probs=45.9
Q ss_pred CCCccEEEecCCcCcccCccCCCCCCCcEEEccCCC--C-CCc-cccCCCCCCCEEEccCCCCccc--chhhhcCCCCCE
Q 000354 534 MPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI--L-GDI-AIIGNLKNLEILSLCCSDIEQL--PREIGELTQLKL 607 (1622)
Q Consensus 534 l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~--l-~~l-~~i~~L~~L~~L~Ls~~~i~~L--P~~i~~L~~L~~ 607 (1622)
+..|..|++.+..++++ ..+..|++|++|.++.|. + ..+ ....++++|++|++++|+|+-+ -..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444444444433 124445555555555552 2 122 2333446666666666655421 012445556666
Q ss_pred EEccCCCCCCccC---ccccCCCCCCCEEE
Q 000354 608 LDLSNCSKLKVIP---PNVISSLSQLEELY 634 (1622)
Q Consensus 608 L~L~~~~~l~~lp---~~~l~~L~~L~~L~ 634 (1622)
|++.+|... .+. ..++.-|++|.+|+
T Consensus 121 Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVT-NLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCcc-ccccHHHHHHHHhhhhcccc
Confidence 666666522 221 12244455666555
No 257
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1 Score=56.90 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=65.9
Q ss_pred ccccccHHHHHHHHHHHHc---------CC---CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHH
Q 000354 138 HEFIESRESILNDILDALR---------GP---YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1622)
-.++-|-++.+.+|.+-+. .. +..=|.++|++|.|||-+|++|+..... -|++|-..
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence 3456688888888887654 12 2346889999999999999999987762 24544332
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 206 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
+++.. .+| ..++.++++.++-+..+.+.|.||.++..
T Consensus 740 ELLNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 12211 222 23456778888888889999999999875
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.063 Score=64.29 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
-.++.++|+.|+||||++.+++...........+..|+... .....+-++...+.++..................+ .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 46899999999999999999998764322223455555322 22345556666677776543322222223333334 3
Q ss_pred CcEEEEEcCCCC
Q 000354 239 KKILVILDDIWT 250 (1622)
Q Consensus 239 kr~LlVlDdv~~ 250 (1622)
++-+|++|....
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 456677998753
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.23 E-value=0.049 Score=64.52 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=55.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
..+.++|..|+|||.||.++++....+ -..++++++. +++..+...-. + ... +. ....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~------~l~~~l~~~~~-~--~~~--~~-~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD------ELIEILREIRF-N--NDK--EL-EEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH------HHHHHHHHHHh-c--cch--hH-HHHHHHhc--cC
Confidence 679999999999999999999987633 2356676543 33333332111 1 000 11 11133332 44
Q ss_pred EEEEEcCCCCh--hhh--hhccCCCCCC-CCCcEEEEEcCc
Q 000354 241 ILVILDDIWTS--LDL--ERTGIPFGDV-HRGCKILVTSRR 276 (1622)
Q Consensus 241 ~LlVlDdv~~~--~~~--~~l~~~l~~~-~~gskIlvTTR~ 276 (1622)
=|||+||+... .+| ..+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999554 233 2222222211 124458888864
No 260
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.22 E-value=0.055 Score=68.92 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=38.2
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
...++|.+..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44688999999888877765544567899999999999999998754
No 261
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.20 E-value=0.093 Score=59.42 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.+..+|+|.|+.|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.20 E-value=0.095 Score=55.03 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=68.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe---cC------------------Cc----------------
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQ------------------TP---------------- 202 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~------------------~~---------------- 202 (1622)
-.++.|+|+.|+||||+.+.+|...+.. .+.+|++- +. .+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 3589999999999999999999988653 34444311 10 00
Q ss_pred -----CHHHHHHHHH---HHhCCCCC-----C-CC-hHHHHHHHHHHHHhcCcEEEEEcC----CCChhhhhhccCCCCC
Q 000354 203 -----DLKRIRREIA---DQLGLNFC-----E-ES-DSERIMMLCNRLKREKKILVILDD----IWTSLDLERTGIPFGD 263 (1622)
Q Consensus 203 -----~~~~i~~~i~---~~l~~~~~-----~-~~-~~~~~~~l~~~l~~~kr~LlVlDd----v~~~~~~~~l~~~l~~ 263 (1622)
...++.+... +..+.... . -+ .+++-..+.+.+- ++.-+|+-|. ++....|+-+...-.-
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1122222222 22222211 1 11 1122223344443 6888888884 6655566654332222
Q ss_pred CCCCcEEEEEcCcchhhhh
Q 000354 264 VHRGCKILVTSRRRDVLVS 282 (1622)
Q Consensus 264 ~~~gskIlvTTR~~~v~~~ 282 (1622)
+..|+.||+.|.+.++.+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 184 NRLGTTVLMATHDLELVNR 202 (223)
T ss_pred hhcCcEEEEEeccHHHHHh
Confidence 4579999999999988774
No 263
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.29 Score=58.18 Aligned_cols=165 Identities=14% Similarity=0.067 Sum_probs=80.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCC-c---ce-----EEEEEecCCcCHHHHHHHHH-HHhCCCCCCCChHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRI-F---DE-----VVFAEVSQTPDLKRIRREIA-DQLGLNFCEESDSERIM 229 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F---~~-----~~wv~vs~~~~~~~i~~~i~-~~l~~~~~~~~~~~~~~ 229 (1622)
...+.++|+.|+||||+|..++...-=... - .| +.++..+..+|...+.-+=. ..-+ .....-..+.++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g-~~~~~I~id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENG-RKLLQIKIDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccc-ccCCCcCHHHHH
Confidence 457889999999999999999987531000 0 00 00111111111100000000 0000 000011244444
Q ss_pred HHHHHHH----hcCcEEEEEcCCCChh--hhhhccCCCCCCCCCcEEEEEcCcch-hhhhcCcccceEEeccCCHHHHHH
Q 000354 230 MLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWS 302 (1622)
Q Consensus 230 ~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gskIlvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~ 302 (1622)
.+.+.+. .+++-++|+|++...+ .-+.+...+.....++.+|++|.+.. +..........+.+.+++.++..+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 5554443 2455566678876652 22333222222224566777777654 333222335678999999999988
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHhCCChHH
Q 000354 303 LFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 303 Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
.+.+. |. ... . ..+..++|-|+.
T Consensus 180 ~L~~~-~~---~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 180 YLRER-GV---AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred HHHhc-CC---CcH--H---HHHHHhCCChhh
Confidence 88653 21 111 1 123568898854
No 264
>PRK06696 uridine kinase; Validated
Probab=95.16 E-value=0.029 Score=63.22 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHc---CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 143 SRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 143 gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|++++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777788887774 45678999999999999999999998875
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.14 Score=60.82 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCEESDSERIMMLCNRLK 236 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 236 (1622)
..++|+|+|++|+||||++..++.....+ .+ .+..++. +.+. ..+-++..++.++...........+....+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 34799999999999999999999877522 22 3444443 2332 222333444455544332223333334444443
Q ss_pred hc-CcEEEEEcCCCC
Q 000354 237 RE-KKILVILDDIWT 250 (1622)
Q Consensus 237 ~~-kr~LlVlDdv~~ 250 (1622)
+. +.=+|++|-...
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 345777786543
No 266
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.15 E-value=0.63 Score=55.87 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcC---CCeEEEEEEeCCCccHHHHHHHHHHHhhcc
Q 000354 145 ESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1622)
Q Consensus 145 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 187 (1622)
+...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666677663 567899999999999999999999988744
No 267
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.14 E-value=0.089 Score=59.51 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=37.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccC----CcceEEEEEecCCcCHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~ 208 (1622)
-.++.|+|.+|+|||++|.+++....... .=..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46899999999999999999987654221 01568899988877766554
No 268
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.13 E-value=0.13 Score=58.97 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=41.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
.++=|+|.+|+|||+||.+++-...... .=..++||+-...++.+++. +|++..+.
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 3788999999999999999886654221 12469999999999988875 56666543
No 269
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.09 E-value=0.081 Score=62.09 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=53.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLCN 233 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (1622)
-+++-|+|++|+||||||.+++..... .-..++||+....++.. .++.++.+.+ ..+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 468889999999999999999877652 23568899887777653 3444444311 1122233333333
Q ss_pred HHHhcCcEEEEEcCCCC
Q 000354 234 RLKREKKILVILDDIWT 250 (1622)
Q Consensus 234 ~l~~~kr~LlVlDdv~~ 250 (1622)
.+..+.--+||+|.|-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 33345677999999753
No 270
>PRK09354 recA recombinase A; Provisional
Probab=95.04 E-value=0.061 Score=63.56 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=55.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLCN 233 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (1622)
-+++-|+|++|+||||||.+++..... .=..++||+....++.. .++.++.+.. .....+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468899999999999999999877652 23568899988877753 3455554321 1223333333333
Q ss_pred HHHhcCcEEEEEcCCCC
Q 000354 234 RLKREKKILVILDDIWT 250 (1622)
Q Consensus 234 ~l~~~kr~LlVlDdv~~ 250 (1622)
.+..++--+||+|.|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 34445677999999753
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.12 Score=59.16 Aligned_cols=76 Identities=21% Similarity=0.189 Sum_probs=49.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
...-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++..++....... . ....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~----~---~~~~l~~~l--~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG----R---LEEKLLREL--K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC----c---hHHHHHHHh--h
Confidence 556799999999999999999999987 3333 344553 455666665554421 1 112223333 2
Q ss_pred CcEEEEEcCCCCh
Q 000354 239 KKILVILDDIWTS 251 (1622)
Q Consensus 239 kr~LlVlDdv~~~ 251 (1622)
+-=||||||+.-.
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 5569999998654
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.90 E-value=0.085 Score=62.21 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....++.+++. +++++++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4688899999999999999887544321 112478999999999988875 456777654
No 273
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.90 E-value=0.23 Score=64.95 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=80.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
+-|.|+|++|+|||++|+.++..... .| +.++.++ +.. + ..+ .....+..+.........
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~--~~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-M--FVG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-h--hhc------ccHHHHHHHHHHHHhcCC
Confidence 34899999999999999999887653 22 2222211 111 0 001 111233334444444577
Q ss_pred EEEEEcCCCChh------------h----hhhccCCCCC--CCCCcEEEEEcCcchhhhhcC----cccceEEeccCCHH
Q 000354 241 ILVILDDIWTSL------------D----LERTGIPFGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKE 298 (1622)
Q Consensus 241 ~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~ 298 (1622)
.+|++|+++... . ...+...+.. ...+.-||.||...+..+... ..+..+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999986641 0 1111111111 123444555777665444311 23457888888888
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCC
Q 000354 299 EAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1622)
Q Consensus 299 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~gl 331 (1622)
+-.++++.+.......++.. ...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 88899988875432211111 23456666553
No 274
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.76 E-value=0.14 Score=54.25 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=31.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
++.|+|.+|+||||+|..++..... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4789999999999999999988753 235677887765544
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.74 E-value=0.095 Score=59.25 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=36.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 208 (1622)
-.++.|+|.+|+|||++|.+++..... .-..++||+.. .++.+++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHH
Confidence 468999999999999999999987653 24678899887 56655543
No 276
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.70 E-value=0.15 Score=64.26 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHcC-----CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe
Q 000354 141 IESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (1622)
+.-..+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+-
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 43445567888888862 3457999999999999999999998875 666778643
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.70 E-value=0.12 Score=61.46 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=43.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhc----cCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
-.++-|+|.+|+|||+|+.+++-.... ...-..++||+....|+.+++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 357889999999999999998754432 11124789999999999888754 66677654
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.69 E-value=0.066 Score=57.90 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=29.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEE
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (1622)
...+|.+.|+.|+||||+|+.++.... ..+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 345899999999999999999999886 345556665
No 279
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.68 E-value=0.17 Score=57.77 Aligned_cols=90 Identities=22% Similarity=0.341 Sum_probs=56.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~------ 226 (1622)
.-++|+|..|+||||||+++++....+ +-+.++++-+++.. .+.++.+++...-..+ ..+++...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999999988742 12456667776654 3556666665432111 11111111
Q ss_pred HHHHHHHHHH-h-cCcEEEEEcCCCCh
Q 000354 227 RIMMLCNRLK-R-EKKILVILDDIWTS 251 (1622)
Q Consensus 227 ~~~~l~~~l~-~-~kr~LlVlDdv~~~ 251 (1622)
..-.+.+++. + ++.+|||+||+-..
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1222344554 2 79999999998654
No 280
>PRK04296 thymidine kinase; Provisional
Probab=94.67 E-value=0.045 Score=59.93 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=61.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHHh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---ESDSERIMMLCNRLKR 237 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 237 (1622)
.++.|+|..|.||||+|..++.+.... -..++.+. ..++.+.....++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887532 23333331 2222222233455566543322 112222222222 22
Q ss_pred cCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcch
Q 000354 238 EKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1622)
Q Consensus 238 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 278 (1622)
++.-+||+|.+... ++...+...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 45568999998653 2233222221 235778999999854
No 281
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.60 E-value=0.33 Score=55.49 Aligned_cols=166 Identities=18% Similarity=0.148 Sum_probs=94.5
Q ss_pred ccccHHHHHHHHHHHHc----CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCc-ceEEEEEecCCcCH-HHHHHHHHH
Q 000354 140 FIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDL-KRIRREIAD 213 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~i~~~i~~ 213 (1622)
.++|-..+..++-.++. .++..-|.|+|+.|.|||+|...+..+.+ .| ...+-|......-. +-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 46666666666666665 34556788999999999999988887732 23 23333444443322 224445555
Q ss_pred HhCCC-----CCCCChHHHHHHHHHHHHhc-----CcEEEEEcCCCChhh-------hhhccCCCCCCCCCcEEEEEcCc
Q 000354 214 QLGLN-----FCEESDSERIMMLCNRLKRE-----KKILVILDDIWTSLD-------LERTGIPFGDVHRGCKILVTSRR 276 (1622)
Q Consensus 214 ~l~~~-----~~~~~~~~~~~~l~~~l~~~-----kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gskIlvTTR~ 276 (1622)
++... ....+-.+....+.+.|+.+ .++.+|+|..+--.. .+-+-..-....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 54322 11123445667777777653 457888887654311 11111111224466778889995
Q ss_pred chhhhh------cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 277 RDVLVS------EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 277 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
.....- ...-..++-++.++-+|...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 422111 12223356666777888888887766
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.34 Score=61.87 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=76.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
..+.+-++|++|.|||.||+++++... .+|-.+.+ . +++ ..+.+ .....+..+...-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~-----~----~l~--------sk~vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKG-----S----ELL--------SKWVG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeC-----H----HHh--------ccccc-hHHHHHHHHHHHHHcC
Confidence 456899999999999999999999665 23433322 1 110 01111 1223344445555457
Q ss_pred CcEEEEEcCCCChhhhhh-------------ccCCCC--CCCCCcEEEEEcCcchhhhhcC----cccceEEeccCCHHH
Q 000354 239 KKILVILDDIWTSLDLER-------------TGIPFG--DVHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEE 299 (1622)
Q Consensus 239 kr~LlVlDdv~~~~~~~~-------------l~~~l~--~~~~gskIlvTTR~~~v~~~~~----~~~~~~~l~~L~~~e 299 (1622)
....|++|+++....+.. +...+. ....+..||-+|-.....+..+ .-+..+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 889999999876532221 111121 1122333444554443333211 235688999999999
Q ss_pred HHHHHHHHhCC
Q 000354 300 AWSLFSKVVGN 310 (1622)
Q Consensus 300 a~~Lf~~~~~~ 310 (1622)
..+.|+.+..+
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999999863
No 283
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=1.7 Score=47.36 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=54.8
Q ss_pred cccccHHHHHHHHHHHHc-------------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHH
Q 000354 139 EFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1622)
..+-|.+-..+++.+..+ =+..+-|.++|++|.|||.||++|+++.... | |.|... +
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs---e 224 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS---E 224 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH---H
Confidence 344565555555554432 1456788999999999999999999887632 3 333221 1
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 206 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
-++ +.+|.. ..-+..+.+--+++..-+|.+|.|+..
T Consensus 225 fvq----kylgeg------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 225 FVQ----KYLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHH----HHhccC------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 111 223321 112333444444567788888988654
No 284
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.34 E-value=0.23 Score=57.12 Aligned_cols=122 Identities=20% Similarity=0.158 Sum_probs=69.6
Q ss_pred HHHHHHHc-CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEE---EecCCcCHHHHHHHHHHHhCC-------
Q 000354 149 NDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA---EVSQTPDLKRIRREIADQLGL------- 217 (1622)
Q Consensus 149 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i~~~i~~~l~~------- 217 (1622)
+.++..|. ..+..-++|+|..|.|||||.+.++..... ..+.+++ .+....... +++.....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 34444443 445678999999999999999999977652 2334443 121111122 23222211
Q ss_pred -CCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhh
Q 000354 218 -NFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVL 280 (1622)
Q Consensus 218 -~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~ 280 (1622)
..+..+.......+...+.....-++|+|.+-..+.+..+...+. .|..||+||.+..+.
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 000011111122344444435788999999988776666654442 477899999876653
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.28 Score=59.44 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=52.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccC--CcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR--IFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCEESDSERIMMLCNR 234 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 234 (1622)
..++|.++|+.|+||||.+..++....... +-..+..|++. .+. ...-++..++.++.+................
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999999998765321 12344455543 333 2333556666666654333333333333333
Q ss_pred HHhcCcEEEEEcCCCC
Q 000354 235 LKREKKILVILDDIWT 250 (1622)
Q Consensus 235 l~~~kr~LlVlDdv~~ 250 (1622)
+ .+.-+||+|....
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3566888898754
No 286
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.28 E-value=0.28 Score=55.98 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=74.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCc---------c-eEEEEEecCCcC-HHHHHHHHHHHhCCCCC----------
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIF---------D-EVVFAEVSQTPD-LKRIRREIADQLGLNFC---------- 220 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---------~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~---------- 220 (1622)
+..|+|++|+|||+||..++-.......| . .+++++..+..+ +.+=+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56799999999999999998875433222 1 345555544432 33333344443321100
Q ss_pred -------C---CChHHHHHHHHHHHHhcCcEEEEEcCCCC--------hhhhhhccCCCCC--CCCCcEEEEEcCcchhh
Q 000354 221 -------E---ESDSERIMMLCNRLKREKKILVILDDIWT--------SLDLERTGIPFGD--VHRGCKILVTSRRRDVL 280 (1622)
Q Consensus 221 -------~---~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--------~~~~~~l~~~l~~--~~~gskIlvTTR~~~v~ 280 (1622)
. ......++.+.+.+...+.-+||+|-+-. ......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01223445555555445778999996521 1222222221111 12466788877754321
Q ss_pred hh--------------cCcccceEEeccCCHHHHHH
Q 000354 281 VS--------------EMHCQNNYCVSVLNKEEAWS 302 (1622)
Q Consensus 281 ~~--------------~~~~~~~~~l~~L~~~ea~~ 302 (1622)
.. .-++...+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 10 01123467777888887776
No 287
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.26 E-value=0.26 Score=56.09 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=35.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
.-.++.|.|.+|+|||++|.++...... .-..++||+..+ +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH
Confidence 3468999999999999999998765431 235688888765 444555543
No 288
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.25 E-value=0.18 Score=59.96 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
-.++-|+|.+|+||||++.+++....... .-..++||+....++.+++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46889999999999999999987754211 11379999999988887765 44555554
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.087 Score=59.43 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhcc--CCcceEEEEEe
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG--RIFDEVVFAEV 198 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v 198 (1622)
.|+|.++|++|.|||+|.++++++..++ ..|.....|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 5899999999999999999999987543 34444444444
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.21 E-value=0.42 Score=58.65 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCC----CChHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCE----ESDSERIMMLC 232 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~ 232 (1622)
...++.++|.+|+||||.|..++.....+..+ .+..|+.. .+. ..+-++..+...+.+... .+..+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 35799999999999999999998876422222 23334332 222 223334445555443221 12223333333
Q ss_pred HHHHhcCcEEEEEcCCC
Q 000354 233 NRLKREKKILVILDDIW 249 (1622)
Q Consensus 233 ~~l~~~kr~LlVlDdv~ 249 (1622)
+.......-++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 34432333377777654
No 291
>PHA02244 ATPase-like protein
Probab=94.21 E-value=0.17 Score=59.83 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+..++..+. -|.|+|+.|+|||+||+++++...
T Consensus 109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555554332 367899999999999999998754
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.21 E-value=0.16 Score=61.34 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=46.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
..++.|+|++|+||||+|.+++........+ .+..++. +.+. ....++..++.++.+... ......+.+.+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~---~~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYP---VKDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeee---hHHHHHHHHHHHh
Confidence 4689999999999999999999765322222 2333332 2222 233344444555554321 1223344555543
Q ss_pred cCcEEEEEcC
Q 000354 238 EKKILVILDD 247 (1622)
Q Consensus 238 ~kr~LlVlDd 247 (1622)
...-+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 4445688894
No 293
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.17 E-value=0.18 Score=56.49 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.14 E-value=0.23 Score=61.33 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
-+++.++|++|+||||++..++........-..+..|+....- ...+-++...+.++..................+ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--C
Confidence 3589999999999999999998776511122345666543211 122233444555555433222222222223333 2
Q ss_pred CcEEEEEcCC
Q 000354 239 KKILVILDDI 248 (1622)
Q Consensus 239 kr~LlVlDdv 248 (1622)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 4568888965
No 295
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.12 E-value=0.22 Score=57.79 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
....+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988876554
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.10 E-value=0.058 Score=66.68 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=40.9
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.++|.++.+++|++.|. +.+.+++.++|++|+||||||+.+++-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999983 45668999999999999999999998775
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.06 Score=54.96 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=24.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhcc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 187 (1622)
.-|+|.||+|+||||+++.+.+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468999999999999999999988754
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=94.08 E-value=0.36 Score=59.23 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+|.++|.+|+||||+|..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999988765
No 299
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.05 E-value=0.11 Score=56.61 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
||.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988764
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.072 Score=68.56 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=93.6
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCc----ceEEEEEecCCcCHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
....++||+++++++++.|.+..----.++|-+|||||++|.-++.+.-.++-- +..++. -+|.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHH
Confidence 345578999999999999984322234578999999999999999887543211 111211 0122
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh----------hhhhccCCCCCCCCCcEEEEEcCcchh---
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGCKILVTSRRRDV--- 279 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gskIlvTTR~~~v--- 279 (1622)
.-.........-.+++..+.+.+.+.++..|++|.+-..- +-..+..|-...+.--.|=.||-++.-
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 2222222223445667777777777679999999975431 111122221112222234456654421
Q ss_pred hhh--cCcccceEEeccCCHHHHHHHHHHHh
Q 000354 280 LVS--EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 280 ~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
-.. .......+.|+..+.+++...++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 000 12235678899999999999887544
No 301
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.003 Score=69.09 Aligned_cols=75 Identities=24% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCccCCCCCCCcEEEccCCCCCCc---cccCCCCCCCEEE
Q 000354 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI---AIIGNLKNLEILS 586 (1622)
Q Consensus 510 ~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~ 586 (1622)
.+.+-|++.++.+. .| ++..+|+.|.||.|+-|.|+.|-+ +..|++|+.|+|..|.|.++ ..+.+|++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34444555554431 11 234455555555555555555522 44555555555555544443 2334444444444
Q ss_pred cc
Q 000354 587 LC 588 (1622)
Q Consensus 587 Ls 588 (1622)
|.
T Consensus 95 L~ 96 (388)
T KOG2123|consen 95 LD 96 (388)
T ss_pred hc
Confidence 43
No 302
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.98 E-value=0.22 Score=54.31 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred CccccccHHHHHHHHHH----HHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILD----ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 212 (1622)
+...++|-+...+.+++ ++..-..--|.+||.-|+||+.|++++.+.+..+ .-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~----------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE----------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH-----------
Confidence 34445665555555554 4445556678999999999999999999988632 222 2222221
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHh-cCcEEEEEcCCCCh---hhhhhccCCCCC---CCCCcEEEEEcCcc
Q 000354 213 DQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTS---LDLERTGIPFGD---VHRGCKILVTSRRR 277 (1622)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~---~~~~~l~~~l~~---~~~gskIlvTTR~~ 277 (1622)
+....-.+.+.|+. .+||+|..||..-+ +....+...+.. ..+...++..|.|+
T Consensus 123 -----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122233444433 68999999998655 334555554432 23334444444444
No 303
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.96 E-value=0.16 Score=60.39 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=43.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
-.++-|+|.+|+|||++|..++-...... .-..++||+....++.+++. +|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 46888999999999999998886443111 11369999999999988764 566776654
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=93.91 E-value=0.4 Score=56.91 Aligned_cols=90 Identities=23% Similarity=0.220 Sum_probs=50.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCC----CChHHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCE----ESDSERIMMLC 232 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~ 232 (1622)
+..+|.++|+.|+||||++..++..... ..+ .++.+. .+.+. ..+-++..+..++..... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3579999999999999999999887653 233 233343 33332 223345566666654321 12222222222
Q ss_pred HHHHhcCcEEEEEcCCCCh
Q 000354 233 NRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 233 ~~l~~~kr~LlVlDdv~~~ 251 (1622)
+.......-+||+|-.-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2322233348899987543
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.90 E-value=0.15 Score=61.61 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=53.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1622)
-.++.|.|.+|+|||||+.+++...... -..++||+..+. ...+ ..-+++++...... ......+.+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999877532 246778876543 3333 22244555432221 011123445555555
Q ss_pred cCcEEEEEcCCCC
Q 000354 238 EKKILVILDDIWT 250 (1622)
Q Consensus 238 ~kr~LlVlDdv~~ 250 (1622)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5777889998743
No 306
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.90 E-value=0.19 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987763
No 307
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.89 E-value=2.6 Score=50.51 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=60.0
Q ss_pred HHHHHHHHcC---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhC
Q 000354 148 LNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLG 216 (1622)
Q Consensus 148 ~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~ 216 (1622)
.++|+++|-. ....||-.+|.-|.||||-|-++++.++. +...+-+...+.+. ..+-++.++.+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 4566666641 23578999999999999999999999874 22233333334443 3455667778877
Q ss_pred CCCCCC----ChHHHHHHHHHHHHhcCcEEEEEcCCC
Q 000354 217 LNFCEE----SDSERIMMLCNRLKREKKILVILDDIW 249 (1622)
Q Consensus 217 ~~~~~~----~~~~~~~~l~~~l~~~kr~LlVlDdv~ 249 (1622)
.+.... +..+.+..-.+..+....=++|+|-.-
T Consensus 156 v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAG 192 (451)
T COG0541 156 VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAG 192 (451)
T ss_pred CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 654432 233344444444443444566666543
No 308
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=1.3 Score=51.95 Aligned_cols=166 Identities=8% Similarity=0.001 Sum_probs=94.6
Q ss_pred HHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHh--------hccCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 000354 149 NDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLA--------KEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 149 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~~ 218 (1622)
+.+...+..+. ..+..++|..|.||+++|..+.+.. ....+-+.+.+++. +....+.++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 33444454444 4567799999999999999999886 21222223344432 2223333332 233333211
Q ss_pred CCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccceEEeccC
Q 000354 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVL 295 (1622)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~~~l~~L 295 (1622)
. ...+++-++|+||++.. ...+.+...+.....++.+|++|.+. .+...-...+..+++.++
T Consensus 85 ~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 S---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred C---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 1 01257788899998765 34555655565555677777666443 333212334668999999
Q ss_pred CHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 000354 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1622)
Q Consensus 296 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 337 (1622)
++++..+.+... + . + ++.+..++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 999988777653 2 1 1 23355666666663344444
No 309
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.84 E-value=0.2 Score=59.40 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=42.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
.-.++.|+|.+|+||||||..++...... ..-..++||+....++..++ .++++.++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 35689999999999999999988643211 11235799999888888764 4455665543
No 310
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.82 E-value=0.23 Score=59.21 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=42.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
-.++-|+|.+|+|||++|.+++........ =..++||+....++..++.+ +++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 468889999999999999999876542211 14799999999888877654 4455554
No 311
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.11 Score=55.97 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 312
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.73 E-value=0.32 Score=56.97 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=51.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLCNR 234 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 234 (1622)
+++-|+|..|+||||||..+....... -..++||+....++.. .+..++.+.+. +...+.+....+-
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 589999999999999999999876532 4568899988887764 34455554322 2233333333333
Q ss_pred HHhcCcEEEEEcCCCCh
Q 000354 235 LKREKKILVILDDIWTS 251 (1622)
Q Consensus 235 l~~~kr~LlVlDdv~~~ 251 (1622)
++.+.--++|+|-|...
T Consensus 127 irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHTTSESEEEEE-CTT-
T ss_pred hhcccccEEEEecCccc
Confidence 44456679999998765
No 313
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.72 E-value=0.29 Score=55.28 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=34.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
-.++.|.|..|+||||+|.+++...... . ..+++++. ..+..++++.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 3589999999999999987776655322 2 34566663 33456666665 34443
No 314
>PTZ00035 Rad51 protein; Provisional
Probab=93.68 E-value=0.29 Score=58.51 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=41.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhc----cCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
-.++.|+|..|+|||||+..++-.... ...-..++||+....++.+++ .++++.++.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 468999999999999999998765431 111235779998888887774 4556665543
No 315
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.66 E-value=0.24 Score=55.59 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 468999999999999999999987642 234577887655554
No 316
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.32 Score=57.74 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=54.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
+.+++.|+|+.|+||||++..++.....+. ..+.+|+..... ...+-++..++.++.......+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999997764322 346666653221 23445555666666543322333334444444432
Q ss_pred -cCcEEEEEcCCCC
Q 000354 238 -EKKILVILDDIWT 250 (1622)
Q Consensus 238 -~kr~LlVlDdv~~ 250 (1622)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788887644
No 317
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.22 Score=50.98 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=35.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 219 (1622)
+|.|.|++|.||||+|+.++++..-. .| +.-.++++|++..+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999988632 11 23367888888888763
No 318
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.55 E-value=0.35 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
.+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998743
No 319
>PRK07667 uridine kinase; Provisional
Probab=93.54 E-value=0.1 Score=57.38 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=29.7
Q ss_pred HHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
++|.+.+. .....+|+|-|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555554 34457999999999999999999998875
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.54 E-value=0.44 Score=55.18 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH--HHHHHHHHHHhCCCCC----CCChHHHHHHH
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL--KRIRREIADQLGLNFC----EESDSERIMML 231 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~----~~~~~~~~~~l 231 (1622)
.+.++|.++|++|+||||++..++...... . ..+.+++.. .+.. .+-++..++..+.... ..+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346799999999999999999999877532 2 345555533 3322 2333444555553321 11122222222
Q ss_pred HHHHHhcCcEEEEEcCCCC
Q 000354 232 CNRLKREKKILVILDDIWT 250 (1622)
Q Consensus 232 ~~~l~~~kr~LlVlDdv~~ 250 (1622)
.+....+..-++|+|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 2233334556788887643
No 321
>PRK04328 hypothetical protein; Provisional
Probab=93.54 E-value=0.3 Score=55.98 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1622)
.-.++.|.|.+|+|||+||.++...... .-..++||+..+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCCH
Confidence 3468999999999999999998766431 23567888876643
No 322
>PRK06547 hypothetical protein; Provisional
Probab=93.53 E-value=0.099 Score=56.00 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+...+......+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445567788999999999999999999998753
No 323
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.046 Score=57.74 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=23.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
+.|.+.|.+|+||||+|+++++..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999999988763
No 324
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.39 E-value=0.44 Score=54.75 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ-LGLN-FCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~~ 237 (1622)
-+++=|+|+.|+||||+|.+++-... ..-..++||+....++++++.. ++.. +..- .......+....+.+.+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 46788999999999999999887665 2234889999999999887643 3333 2211 1111222333333333332
Q ss_pred -c--CcEEEEEcCCCC
Q 000354 238 -E--KKILVILDDIWT 250 (1622)
Q Consensus 238 -~--kr~LlVlDdv~~ 250 (1622)
. +--|+|+|.|-.
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 2 367899998854
No 325
>PRK05439 pantothenate kinase; Provisional
Probab=93.38 E-value=0.45 Score=55.67 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=44.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHH
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL-GLNFCEESDSERIMMLCNRLK 236 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~~~~~~~~~~~~~~~l~~~l~ 236 (1622)
....+|+|.|.+|+||||+|+.+.........-..+.-|+..+-+...+.+..- ..+ ....++.-+.+.....+..++
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHHH
Confidence 456799999999999999999998866421111234444444433332222211 011 112233334455556666676
Q ss_pred hcCc
Q 000354 237 REKK 240 (1622)
Q Consensus 237 ~~kr 240 (1622)
.++.
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 5554
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.37 E-value=0.57 Score=46.57 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHHHc-------CCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 141 IESRESILNDILDALR-------GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
++|..-..+.+++.+. .++.-|++.+|..|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4565555555555543 2345699999999999999999999874
No 327
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.36 E-value=0.22 Score=55.21 Aligned_cols=87 Identities=26% Similarity=0.480 Sum_probs=54.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChHHH-----
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDSER----- 227 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~~~~~~----- 227 (1622)
.-++|.|.+|+|||+|+.++.+... -+.++++-+++. ....++.+++...-..+ ...++....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3689999999999999999998875 345588888765 45566666664431111 111221111
Q ss_pred -HHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 228 -IMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 228 -~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
.-.+.+++. +++++|+|+||+-..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHHH
Confidence 112233343 489999999998443
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.35 E-value=0.068 Score=54.23 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 329
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.64 Score=54.16 Aligned_cols=37 Identities=32% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1622)
..-+-|.++|++|.|||-||++|+..-. +-|++||..
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~-------tTFFNVSss 279 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECG-------TTFFNVSSS 279 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhc-------CeEEEechh
Confidence 3567899999999999999999998775 345666543
No 330
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.45 Score=61.84 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC--HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD--LKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
-+||+++|+.|+||||++.+++...........+..++. +.+. ..+-++...+.++.......+...+....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-
Confidence 479999999999999999999987642222234555543 2333 445566667777765443333333444444443
Q ss_pred cCcEEEEEcCCC
Q 000354 238 EKKILVILDDIW 249 (1622)
Q Consensus 238 ~kr~LlVlDdv~ 249 (1622)
.+-+|++|-.-
T Consensus 263 -~~D~VLIDTAG 273 (767)
T PRK14723 263 -DKHLVLIDTVG 273 (767)
T ss_pred -CCCEEEEeCCC
Confidence 33478888765
No 331
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.32 E-value=0.65 Score=53.55 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------
Q 000354 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ 221 (1622)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------ 221 (1622)
.++..+++.+.++.+|.|.|.+|+|||||+..+.+..... .. ++.+ ..+..+..+ .+.++..+....+
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKG 165 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCC
Confidence 3445555556789999999999999999999999987532 22 2222 222222222 1223333322111
Q ss_pred -CChHHHHHHHHHHHHhcCcEEEEEcCCCC
Q 000354 222 -ESDSERIMMLCNRLKREKKILVILDDIWT 250 (1622)
Q Consensus 222 -~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 250 (1622)
......+...+..+....--++|+++|.+
T Consensus 166 Chl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 166 CHLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 11223333444455444556778899875
No 332
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.30 E-value=0.41 Score=52.60 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=30.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCc--------ceEEEEEecCCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--------DEVVFAEVSQTP 202 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~ 202 (1622)
.++.|+|.+|+||||++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 378999999999999999999887654433 367788776653
No 333
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.23 E-value=0.18 Score=52.01 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEE
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKIL 242 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 242 (1622)
|.|+|.+|+|||+||+.+++... ...+-+.++...+..+++...--. ... ....+. .+.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~~----~l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKDG----PLVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE-----CCCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeec-ccc-cccccc----cccccc--cceeE
Confidence 67999999999999999998883 224456788888877765433211 000 000000 000111 27899
Q ss_pred EEEcCCCCh
Q 000354 243 VILDDIWTS 251 (1622)
Q Consensus 243 lVlDdv~~~ 251 (1622)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999843
No 334
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.14 E-value=0.24 Score=50.19 Aligned_cols=103 Identities=19% Similarity=0.336 Sum_probs=39.4
Q ss_pred hhhhcCCCCccEEEecCCcCcccC-ccCCCCCCCcEEEccCCCCCCc--cccCCCCCCCEEEccCCCCcccch-hhhcCC
Q 000354 528 DNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPR-EIGELT 603 (1622)
Q Consensus 528 ~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~L~ 603 (1622)
...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+..+.+|+.+.+.. .+..++. .+..+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455555555555543 333332 22444445555555443 3333 3344554555555543 3333332 234455
Q ss_pred CCCEEEccCCCCCCccCccccCCCCCCCEEEcc
Q 000354 604 QLKLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1622)
Q Consensus 604 ~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1622)
+|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 5555555432 444544445554 55555543
No 335
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=1.5 Score=47.75 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHH
Q 000354 143 SRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1622)
Q Consensus 143 gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 209 (1622)
|-++.+++|.+.+. . ...+-+.++|++|.|||-||++|+++.. ..||.||...- +++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgsel---vqk 220 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSEL---VQK 220 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHHH---HHH
Confidence 45666666665554 1 2346688999999999999999986653 45677765422 222
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh-------------hhhhc---cCCCC--CCCCCcEEE
Q 000354 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERT---GIPFG--DVHRGCKIL 271 (1622)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l---~~~l~--~~~~gskIl 271 (1622)
-|.+ ...-+.++.---++.-.-+|.+|.+++.. .-..+ ...+. ...++-|||
T Consensus 221 ~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 221 YIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred Hhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 2211 01112222222334566778888876541 00111 11111 124567888
Q ss_pred EEcCcchhhhhc---C-cccceEEeccCCHHHHHHHHHHHh
Q 000354 272 VTSRRRDVLVSE---M-HCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 272 vTTR~~~v~~~~---~-~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
..|..-++.+.+ . ..+..++.++-+++.-.++++-+.
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 877766665541 1 224467777777666666665444
No 336
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.96 E-value=0.039 Score=36.76 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=13.2
Q ss_pred CCCEEEccCCCCcccchhhhc
Q 000354 581 NLEILSLCCSDIEQLPREIGE 601 (1622)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~~i~~ 601 (1622)
+|++|||++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665544
No 337
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.92 E-value=1.5 Score=50.71 Aligned_cols=130 Identities=11% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCC-eEEEEEEeCCCccHHHHHHHHHHHhhcc------------CCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 147 ILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEG------------RIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 147 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
..+++...+..+. .....++|+.|+||+++|..++...--. .|-|..+.......
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------------ 72 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------------ 72 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC------------
Confidence 3456666666555 4577899999999999999998876411 12221111111000
Q ss_pred HhCCCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcc
Q 000354 214 QLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHC 286 (1622)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~ 286 (1622)
..-..+.++.+.+.+. .+++-++|+|+++.. +.++.+...+.....++.+|++|.+. .+...-...
T Consensus 73 -------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 73 -------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred -------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 0012333334444332 256678899998765 56777766665555677777766664 333221223
Q ss_pred cceEEeccC
Q 000354 287 QNNYCVSVL 295 (1622)
Q Consensus 287 ~~~~~l~~L 295 (1622)
...+.+.++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 445666654
No 338
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.90 E-value=0.15 Score=62.55 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcc
Q 000354 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 191 (1622)
.++||++.++.+...+..++ -|.|.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999998876443 488999999999999999998764333443
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.88 E-value=0.3 Score=53.25 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=31.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
++.|.|.+|+|||++|.+++...... =..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999998765421 245778876543 4444443
No 340
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.86 E-value=0.38 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+++|+|..|+|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999987653
No 341
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.83 E-value=0.095 Score=57.69 Aligned_cols=25 Identities=44% Similarity=0.745 Sum_probs=23.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998863
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.81 E-value=0.45 Score=51.63 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEE---ecCCcCHHHHHH------HHHHHhCCCCC------CCCh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRR------EIADQLGLNFC------EESD 224 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~------~i~~~l~~~~~------~~~~ 224 (1622)
-.+++|+|..|.|||||++.++.... ...+.++++ +.. .+...... ++++.++.... .-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35899999999999999999987543 234555442 221 12222221 13444444211 1111
Q ss_pred HH-HHHHHHHHHHhcCcEEEEEcCCCCh---hhhhhccCCCCCC-CC-CcEEEEEcCcchhh
Q 000354 225 SE-RIMMLCNRLKREKKILVILDDIWTS---LDLERTGIPFGDV-HR-GCKILVTSRRRDVL 280 (1622)
Q Consensus 225 ~~-~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~-gskIlvTTR~~~v~ 280 (1622)
.+ ..-.+.+.+. ...-++++|+--.. +..+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 1222334444 57788999986433 2222222222111 12 56788888877654
No 343
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.81 E-value=0.74 Score=54.88 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=49.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
.-++|.+||+.||||||-..+++.++.....=..+..|+... .....+-++..++-++.+.........+..-...+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~- 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR- 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-
Confidence 368999999999999655444444443112224455555422 123444555666667776554444444444444443
Q ss_pred cCcEEEEEcCCC
Q 000354 238 EKKILVILDDIW 249 (1622)
Q Consensus 238 ~kr~LlVlDdv~ 249 (1622)
.+=+|.+|-+.
T Consensus 281 -~~d~ILVDTaG 291 (407)
T COG1419 281 -DCDVILVDTAG 291 (407)
T ss_pred -cCCEEEEeCCC
Confidence 23455556553
No 344
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.72 Score=58.11 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=90.7
Q ss_pred ccccccHHH---HHHHHHHHHcCCC---------eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHH
Q 000354 138 HEFIESRES---ILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1622)
Q Consensus 138 ~~~~~gR~~---~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1622)
+.++.|.++ ++.++++.|++.. .+=|.++|++|.|||.||++++....+- | +++|...-++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FVe 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFVE 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhhh
Confidence 444566655 4556666776432 3568899999999999999999888753 2 2222221100
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCChh------------hh----hhccCCCCCCC--CC
Q 000354 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFGDVH--RG 267 (1622)
Q Consensus 206 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~----~~l~~~l~~~~--~g 267 (1622)
|. .+ -....++.+...-++.-.++|++|.++... .+ +.+..-...++ .|
T Consensus 222 -----mf--VG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 222 -----MF--VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -----hh--cC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 00 01 123445555555555677999999876541 11 12221122222 23
Q ss_pred cEEEEEcCcchhhhh---cCc-ccceEEeccCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHhCCCh
Q 000354 268 CKILVTSRRRDVLVS---EMH-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1622)
Q Consensus 268 skIlvTTR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~glP 332 (1622)
-.|+--|-..+|.+. ..+ -+..+.++.-+-..-.+.++-++....-.+.. + ...|++.+-|.-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-d-l~~iAr~tpGfs 355 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-D-LKKIARGTPGFS 355 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-C-HHHHhhhCCCcc
Confidence 333333444444433 122 24456666666566677777666432222111 1 123677766653
No 345
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.71 E-value=0.58 Score=53.19 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------------------
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------------------ 221 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------ 221 (1622)
-.++.|+|.+|+|||++|.++...... .=..++|++..+. ..++.+.+ .+++.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 468999999999999999999765431 1246888888654 44555543 333322111
Q ss_pred ---CChHHHHHHHHHHHHhcCcEEEEEcCCC
Q 000354 222 ---ESDSERIMMLCNRLKREKKILVILDDIW 249 (1622)
Q Consensus 222 ---~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 249 (1622)
.........+.+.+.+.+.-++|+|.+-
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344444555544466689999865
No 346
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.68 E-value=0.58 Score=51.82 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=39.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEE-------EEecCCcCHHHHH--HHHHHHhCCCCCC
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-------AEVSQTPDLKRIR--REIADQLGLNFCE 221 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-------v~vs~~~~~~~i~--~~i~~~l~~~~~~ 221 (1622)
...+|.++||+|.||||..+.++.+...++.-..++= +...-+.++++.. ++..++.+....+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 3457889999999999999999998875433222221 1122344555543 4566665554333
No 347
>PRK08233 hypothetical protein; Provisional
Probab=92.57 E-value=0.098 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.52 E-value=0.23 Score=54.73 Aligned_cols=110 Identities=11% Similarity=0.128 Sum_probs=56.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHH-HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcC
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK-RIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1622)
.+|.|+|+.|+||||++..+...... .....+++ +.+..... .-...+..+-.. ........+.+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHHHhc-CC
Confidence 47899999999999999998877642 23333332 22221100 000011111000 1111112233344443 35
Q ss_pred cEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcchhh
Q 000354 240 KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVL 280 (1622)
Q Consensus 240 r~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~ 280 (1622)
.=.|++|++.+.+.+....... ..|-.|+.|+....+.
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 6689999998776554432221 2355577777665543
No 349
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.49 E-value=0.58 Score=57.11 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=48.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
-.+|+++|+.|+||||++.+++.........+.+.++.... .....+-+..+++.++..................+ .
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l--~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL--R 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh--c
Confidence 46999999999999999999987653222233444443322 12233334455666665543322222222333333 2
Q ss_pred CcEEEEEcCC
Q 000354 239 KKILVILDDI 248 (1622)
Q Consensus 239 kr~LlVlDdv 248 (1622)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3456667765
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.43 E-value=0.11 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.41 E-value=0.71 Score=52.71 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=58.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh--ccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH----
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE---- 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~---- 226 (1622)
.-++|.|-.|+|||+|+.++.+... .+..-+.++++-+++.. +..++.+++...-... ...++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4679999999999999999987754 12234778888887765 4566666665432211 01111111
Q ss_pred --HHHHHHHHHHh--cCcEEEEEcCCCCh
Q 000354 227 --RIMMLCNRLKR--EKKILVILDDIWTS 251 (1622)
Q Consensus 227 --~~~~l~~~l~~--~kr~LlVlDdv~~~ 251 (1622)
....+.+++.. ++++|+|+||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12224455543 69999999998654
No 352
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.41 E-value=0.46 Score=53.51 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=67.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-----CcCHHHHHHHHHHHhCCCC-------CCCChHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-----TPDLKRIRREIADQLGLNF-------CEESDSER 227 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~-------~~~~~~~~ 227 (1622)
-.+++|||-.|.||||+|+.+..-.... .+.+++.-.+ .....+-..++++.++... .+.+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3589999999999999999998766532 3444443211 2223344556666665432 11222233
Q ss_pred HHHHHHHHHhcCcEEEEEcCCCChh------hhhhccCCCCCCCCCcEEEEEcCcchhhhh
Q 000354 228 IMMLCNRLKREKKILVILDDIWTSL------DLERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1622)
Q Consensus 228 ~~~l~~~l~~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gskIlvTTR~~~v~~~ 282 (1622)
..-...+...-+.-++|.|.--+.- +.-.+...+. ...|-..++.|-+-.|+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhh
Confidence 3333333334688999999854431 1111211111 2235568888888887774
No 353
>PRK06851 hypothetical protein; Provisional
Probab=92.41 E-value=0.94 Score=54.23 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
.+--+++.|.|.+|+|||||++.++..... +.++..++-|-++..+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPds 256 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDS 256 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCC
Confidence 344578999999999999999999998863 5677777766555433
No 354
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.39 E-value=0.66 Score=53.68 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=36.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1622)
..-+++.|+|.+|+|||++|.++..... +....++||+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCH
Confidence 3557999999999999999999998887 337889999887664
No 355
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.37 E-value=0.47 Score=58.81 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=48.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
-+|++++|+.|+||||++.+++.....+..-..+..|.. +.+ ...+-++..++.++..................+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L-- 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL-- 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--
Confidence 369999999999999999999987743322223445543 233 233444555666665433211111111111222
Q ss_pred cCcEEEEEcCCC
Q 000354 238 EKKILVILDDIW 249 (1622)
Q Consensus 238 ~kr~LlVlDdv~ 249 (1622)
..+..+++|-..
T Consensus 333 ~d~d~VLIDTaG 344 (484)
T PRK06995 333 RNKHIVLIDTIG 344 (484)
T ss_pred cCCCeEEeCCCC
Confidence 234577777764
No 356
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.33 E-value=0.08 Score=58.19 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred cccccEEEecccCCCC-----CCCCC-CCCCccEEEccCCCCC---CCCCh------hhhcCCCCccEEEecCCcCc-cc
Q 000354 487 LKNCIAIFLHDINTGE-----LPEGL-EYPHLTSLCMNPKDPF---LHIPD------NFFAGMPKLRVLVLTRMKLL-TL 550 (1622)
Q Consensus 487 ~~~lr~Lsl~~~~~~~-----lp~~~-~~~~Lr~L~L~~n~~~---~~lp~------~~f~~l~~Lr~L~Ls~~~i~-~l 550 (1622)
++.+..+.+++|.+++ +...+ .-.+|+..+++.-... ..++. ..+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456677777776653 21122 3456666655532110 11111 12456777777888777765 33
Q ss_pred Cc----cCCCCCCCcEEEccCCCCCCc--c-------------ccCCCCCCCEEEccCCCCcccchh-----hhcCCCCC
Q 000354 551 PS----SFCHLPNLESLCLDQCILGDI--A-------------IIGNLKNLEILSLCCSDIEQLPRE-----IGELTQLK 606 (1622)
Q Consensus 551 p~----~i~~L~~Lr~L~L~~~~l~~l--~-------------~i~~L~~L~~L~Ls~~~i~~LP~~-----i~~L~~L~ 606 (1622)
|+ -|++-..|..|.|++|.++-+ . ...+-+.|++.....|++..-|.. +..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 32 356667777777777766543 1 233556677777766666654432 22224677
Q ss_pred EEEccCCCCCCccCcc-------ccCCCCCCCEEEccCCccc
Q 000354 607 LLDLSNCSKLKVIPPN-------VISSLSQLEELYLGNTSVE 641 (1622)
Q Consensus 607 ~L~L~~~~~l~~lp~~-------~l~~L~~L~~L~l~~~~~~ 641 (1622)
++.+..|. +. |.+ .+..+.+|+.|++.+|.++
T Consensus 189 ~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 189 EVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77776654 22 221 1345567777777777665
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.32 E-value=0.17 Score=53.99 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=57.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC--CcCHHHHHHHHHHHhCCCCCCCChHH-HHHHHHHHHHh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ--TPDLKRIRREIADQLGLNFCEESDSE-RIMMLCNRLKR 237 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~~ 237 (1622)
.+++|+|..|.|||||.+.++.... ...+.+++.-.+ ..+..+..+ ..++.-.. -+..+ ..-.+.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~- 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALA- 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHh-
Confidence 4899999999999999999986543 345556553211 111111111 11111111 12222 2223334444
Q ss_pred cCcEEEEEcCCCCh---hhhhhccCCCCC-CCCCcEEEEEcCcchhhh
Q 000354 238 EKKILVILDDIWTS---LDLERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1622)
Q Consensus 238 ~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gskIlvTTR~~~v~~ 281 (1622)
.+.-++++|+--.. ...+.+...+.. ...|.-||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57788889986443 112222222211 123566888888876433
No 358
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.31 E-value=0.35 Score=51.95 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
-.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999987654
No 359
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.30 E-value=0.12 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986654
No 360
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.14 Score=56.03 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=25.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.+.+|+|.|.+|+||||+|++++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4679999999999999999999988873
No 361
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.24 E-value=0.23 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999987
No 362
>PTZ00301 uridine kinase; Provisional
Probab=92.23 E-value=0.13 Score=57.02 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 363
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.22 E-value=1.1 Score=47.08 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=61.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEec---CCcCHHHHHHHHH----HHhCCC--CCCCChHH---HH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS---QTPDLKRIRREIA----DQLGLN--FCEESDSE---RI 228 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs---~~~~~~~i~~~i~----~~l~~~--~~~~~~~~---~~ 228 (1622)
..|-|++..|.||||+|...+-+..- ..+. +.+|-+- .......+++.+- .+.+.. +......+ ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~~-v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG-HGYR-VGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCe-EEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 47888999999999999999877652 2232 3333332 2334444444431 000111 00111111 11
Q ss_pred ----HHHHHHHHhcCcEEEEEcCCCCh-----hhhhhccCCCCCCCCCcEEEEEcCcch
Q 000354 229 ----MMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1622)
Q Consensus 229 ----~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gskIlvTTR~~~ 278 (1622)
+...+.+..++-=|||||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223333356679999998544 122333333333445678999999864
No 364
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.22 E-value=0.24 Score=55.35 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=37.1
Q ss_pred HHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 147 ILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 147 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
...++++.+. ..+..+|+|.|++|+|||||.-++...++.+.+=-.++=|+=|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3445555554 35678999999999999999999999887543333455555455554
No 365
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.22 E-value=0.18 Score=66.73 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHh-hccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC----CCCChHHHHHHHH
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLA-KEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF----CEESDSERIMMLC 232 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~ 232 (1622)
.+.+++.|.|+.|.||||+.+.+.-.. ..... ++|.+.....+ .++.++...++... ....-......+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 345789999999999999999998652 21111 11111110000 00001100000000 0000001111122
Q ss_pred HHHHh-cCcEEEEEcCCCChh---hhhhc----cCCCCCCCCCcEEEEEcCcchhhhhcCcccc--eEEeccCCHHHHHH
Q 000354 233 NRLKR-EKKILVILDDIWTSL---DLERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSVLNKEEAWS 302 (1622)
Q Consensus 233 ~~l~~-~kr~LlVlDdv~~~~---~~~~l----~~~l~~~~~gskIlvTTR~~~v~~~~~~~~~--~~~l~~L~~~ea~~ 302 (1622)
.-+.. .++-|+++|..-.-. +...+ ...+. ..|+.+|+||....+......... ...+. ++ ++...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d-~~~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FD-EETLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec-CCCCc
Confidence 22221 478999999986542 22222 22222 257889999999876542111111 11111 11 11111
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 000354 303 LFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1622)
Q Consensus 303 Lf~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~w~~~l~~l~~ 359 (1622)
|..+.-...+. ...|-+|++++ |+|-.|.--|..+......+++.++..+..
T Consensus 471 -p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 -PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred -eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111111 23577888877 888888888887766655567888777773
No 366
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.21 E-value=0.3 Score=56.28 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
+.|.|.|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999988764
No 367
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.20 E-value=0.057 Score=55.75 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 143 SRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 143 gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|+...++++.+.+. .....-|.|+|..|+||+++|+.+.....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 33344555555443 12334578999999999999999887654
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.20 E-value=0.13 Score=57.40 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 369
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.62 Score=51.05 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=36.9
Q ss_pred ccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+-|-.+.+++|.+..+ . +..+-|.++|++|.|||-+|++|+++..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 3445677777777777643 1 3456788999999999999999998775
No 370
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.11 E-value=0.39 Score=48.69 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=63.3
Q ss_pred CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCcCcccCc-cCCCCCCCcEEEccCCCCCCc--cccCCCCCCCE
Q 000354 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEI 584 (1622)
Q Consensus 508 ~~~~Lr~L~L~~n~~~~~lp~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 584 (1622)
.+++|+.+.+..+ ...++...|.++..|+.+.+.++ +..++. .|.++..|+.+.+.. .+..+ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 5678888887642 35677777888988999998875 665544 467777899999976 44444 56778899999
Q ss_pred EEccCCCCcccch-hhhcCCCCCEEEccCCCCCCccCccccCCCCCCC
Q 000354 585 LSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLE 631 (1622)
Q Consensus 585 L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~ 631 (1622)
+++..+ +..++. .+.+. +|+.+.+.. .+..++.+.+.+.++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999765 666654 36665 889888775 36777777677666653
No 371
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.08 E-value=0.62 Score=53.76 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=30.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (1622)
-.++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999987665321 24677888764
No 372
>PRK06762 hypothetical protein; Provisional
Probab=92.02 E-value=0.14 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
.++|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 373
>PRK03839 putative kinase; Provisional
Probab=92.00 E-value=0.13 Score=55.95 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 374
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=0.021 Score=60.41 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=36.4
Q ss_pred ccceeecccccccchhhccCccccccccccceeEeeccCCcccc--CCCCCccCCccEEEEeccCCCccc
Q 000354 1152 HIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNL--VPSSPSFRNLITLEVWYCKGLKNL 1219 (1622)
Q Consensus 1152 sL~~L~i~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l--~~~~~~l~sL~~L~I~~C~~L~~l 1219 (1622)
.++.++-+++ +|..+|...+..+++++.|.+.+|..+.+. --..+-.++|+.|+|++|++|++-
T Consensus 102 ~IeaVDAsds----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDS----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCc----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 4566666653 344455666666777777777777766432 111123456666666666666654
No 375
>PTZ00494 tuzin-like protein; Provisional
Probab=91.94 E-value=29 Score=41.92 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=97.4
Q ss_pred CccccccHHHHHHHHHHHHc---CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 137 GHEFIESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
....++.|+.+-..+.+.|. -...+++.+.|.-|.||++|.+....+..+ ..++|+|..+.| -++.|.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHHHHHH
Confidence 44567889888777777776 346789999999999999999998887763 367888887755 4667888
Q ss_pred HhCCCCCCC--ChHHHHHHHHHHH---HhcCcEEEEEc--CCCChhhhhhccCCCCCCCCCcEEEEEcCcchhhhh--cC
Q 000354 214 QLGLNFCEE--SDSERIMMLCNRL---KREKKILVILD--DIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS--EM 284 (1622)
Q Consensus 214 ~l~~~~~~~--~~~~~~~~l~~~l---~~~kr~LlVlD--dv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~--~~ 284 (1622)
.++.+..+. +..+-+.+-...- ..++.=+||+- +-.+....-.=...+.....-|.|++----+.+-.. ..
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccC
Confidence 888764432 1112222111111 12444555553 222221100000112222345667664333322111 23
Q ss_pred cccceEEeccCCHHHHHHHHHHHh
Q 000354 285 HCQNNYCVSVLNKEEAWSLFSKVV 308 (1622)
Q Consensus 285 ~~~~~~~l~~L~~~ea~~Lf~~~~ 308 (1622)
..-..|.+++++.++|.+.-.+..
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 334578999999999998887755
No 376
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.93 E-value=0.73 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+++|+|..|.|||||++.++....
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987653
No 377
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.92 E-value=0.15 Score=56.73 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
....+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998764
No 378
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.92 E-value=0.13 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
++.+|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 379
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.87 E-value=0.79 Score=48.63 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=62.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEE--EEEecCCcCHHHHHHHHH---HHhCCC--CCCCCh---HHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV--FAEVSQTPDLKRIRREIA---DQLGLN--FCEESD---SERIM 229 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~i~~~i~---~~l~~~--~~~~~~---~~~~~ 229 (1622)
...|-|++..|.||||.|..++-+..- ..+...+ |+.-........+++.+. .+.+.. +...+. ...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 457888999999999999999887752 3333322 333222334444444320 001111 111111 11222
Q ss_pred H----HHHHHHhcCcEEEEEcCCCChh-----hhhhccCCCCCCCCCcEEEEEcCcch
Q 000354 230 M----LCNRLKREKKILVILDDIWTSL-----DLERTGIPFGDVHRGCKILVTSRRRD 278 (1622)
Q Consensus 230 ~----l~~~l~~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gskIlvTTR~~~ 278 (1622)
. ..+.+..++--|||||.+-..- +.+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2 2333444667799999985332 22233333333445678999999873
No 380
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.86 E-value=0.69 Score=57.06 Aligned_cols=90 Identities=22% Similarity=0.341 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~------ 226 (1622)
.-++|.|.+|+|||||+.++++..... +-+.++++-+++.. .+.+++.++...-... ..+++...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999999887633 56788888777654 4556666665432111 11112111
Q ss_pred HHHHHHHHHHh--cCcEEEEEcCCCCh
Q 000354 227 RIMMLCNRLKR--EKKILVILDDIWTS 251 (1622)
Q Consensus 227 ~~~~l~~~l~~--~kr~LlVlDdv~~~ 251 (1622)
....+.+++.. ++++|+++||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12234455542 79999999998544
No 381
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.86 E-value=0.51 Score=61.56 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=55.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLCN 233 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 233 (1622)
-+++-|+|.+|+||||||.+++...... =..++||+....++.. .+++++.+... .........+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4688899999999999998877654322 2557899888877743 66777765332 222333333333
Q ss_pred HHHhcCcEEEEEcCCCC
Q 000354 234 RLKREKKILVILDDIWT 250 (1622)
Q Consensus 234 ~l~~~kr~LlVlDdv~~ 250 (1622)
.+.+++--|||+|.+-.
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 34445677899998753
No 382
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.85 E-value=0.72 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
||.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998775
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.78 E-value=0.36 Score=60.09 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1622)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ...+.. -+++++.+.... ......+.+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999999876522 235788876543 333322 245555432110 000112344444444
Q ss_pred cCcEEEEEcCCC
Q 000354 238 EKKILVILDDIW 249 (1622)
Q Consensus 238 ~kr~LlVlDdv~ 249 (1622)
.+.-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455677777764
No 384
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.71 E-value=0.58 Score=48.63 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=25.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEE
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (1622)
.+++|+|..|.|||||++.+...... ..+.+|+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~ 59 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTW 59 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEE
Confidence 58999999999999999999875532 3444444
No 385
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.70 E-value=0.19 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARL 183 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (1622)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999853
No 386
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.7 Score=60.75 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=65.3
Q ss_pred ccccHHHHHHHHHHHHcC------C--CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHH
Q 000354 140 FIESRESILNDILDALRG------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 211 (1622)
.++|.++.+..|.+.+.. + ....+.+.|+.|+|||.||++++.-.- ...+..+-|+.++-.. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------h
Confidence 355666677777766651 2 456788999999999999999998774 3344555555443222 2
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCCh
Q 000354 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
.+.++.+ +.--..+....+-+.+++....+|+||||+..
T Consensus 634 skligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222322 22222334456777887677788888999876
No 387
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.68 E-value=0.44 Score=53.88 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=50.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC--------------------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC-------------------- 220 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------------- 220 (1622)
.++.|.|.+|+|||++|.+++.....+ .=..++||+..+.. +++.+.+. .++.+..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccc
Confidence 589999999999999999987654311 01457788775554 44444432 3332100
Q ss_pred -CCChHHHHHHHHHHHHhcCcEEEEEcCCC
Q 000354 221 -EESDSERIMMLCNRLKREKKILVILDDIW 249 (1622)
Q Consensus 221 -~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 249 (1622)
..+.......+.+.+.+.+...+|+|.+.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 12233444555555555566889999864
No 388
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.54 E-value=0.11 Score=34.64 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=15.5
Q ss_pred CccEEEecCCcCcccCccCCCC
Q 000354 536 KLRVLVLTRMKLLTLPSSFCHL 557 (1622)
Q Consensus 536 ~Lr~L~Ls~~~i~~lp~~i~~L 557 (1622)
+|++|+|++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4777888888777777766543
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.54 E-value=0.68 Score=58.62 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=53.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------------C
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------E 222 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------~ 222 (1622)
.-.++.|.|.+|+|||||+.+++.....+ =..+++++..+. ..++.+.+ +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34689999999999999999999877522 245667665444 44455443 455543211 1
Q ss_pred ChHHHHHHHHHHHHhcCcEEEEEcCCC
Q 000354 223 SDSERIMMLCNRLKREKKILVILDDIW 249 (1622)
Q Consensus 223 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 249 (1622)
...+.+..+.+.+.+.+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 123445555555554455667777764
No 390
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.4 Score=56.59 Aligned_cols=84 Identities=31% Similarity=0.392 Sum_probs=57.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKRE 238 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 238 (1622)
.+|.|-|-+|||||||..+++.+...+. .+.+|+-.+. ..++ +--+++++...... -.....+.+.+.+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 5899999999999999999999987443 6777654443 3332 33456676543321 1223455667777778
Q ss_pred CcEEEEEcCCCC
Q 000354 239 KKILVILDDIWT 250 (1622)
Q Consensus 239 kr~LlVlDdv~~ 250 (1622)
+.-++|+|-+..
T Consensus 168 ~p~lvVIDSIQT 179 (456)
T COG1066 168 KPDLVVIDSIQT 179 (456)
T ss_pred CCCEEEEeccce
Confidence 999999998754
No 391
>PRK00625 shikimate kinase; Provisional
Probab=91.52 E-value=0.15 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.|+||+|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 392
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.50 E-value=0.16 Score=51.02 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 208 (1622)
.-|.|.|-+|+||||+|.+++.... .-|+++|+-.....++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~ 48 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLY 48 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcch
Confidence 4588999999999999999996554 2377777654444333
No 393
>PRK04040 adenylate kinase; Provisional
Probab=91.46 E-value=0.17 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.39 E-value=1.4 Score=52.20 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=25.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
...+|+++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988763
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.38 E-value=0.69 Score=49.39 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=47.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc-Cc
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE-KK 240 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr 240 (1622)
++.|.|..|+|||++|.+++... ...++++.-.+.++. ++.+.|...-..........+....+.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 36799999999999999998652 235667766666654 344444433222222222223334444545332 34
Q ss_pred EEEEEcCC
Q 000354 241 ILVILDDI 248 (1622)
Q Consensus 241 ~LlVlDdv 248 (1622)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999986
No 396
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.38 E-value=0.55 Score=50.52 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=60.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh-c--cCC---c--ceEEEEEecCCcCHHHHHHHHHHHhCCCCC--C-----CChH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK-E--GRI---F--DEVVFAEVSQTPDLKRIRREIADQLGLNFC--E-----ESDS 225 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~-~--~~~---F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~-----~~~~ 225 (1622)
.+++|+|+.|+|||||.+.+..+.- + ... | ..+.|+ .+ .+.+..++.... . -+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 5899999999999999999864211 0 000 1 012232 11 345666664321 1 1111
Q ss_pred H-HHHHHHHHHHhcC--cEEEEEcCCCCh---hhhhhccCCCCC-CCCCcEEEEEcCcchhhhhcCcccceEEe
Q 000354 226 E-RIMMLCNRLKREK--KILVILDDIWTS---LDLERTGIPFGD-VHRGCKILVTSRRRDVLVSEMHCQNNYCV 292 (1622)
Q Consensus 226 ~-~~~~l~~~l~~~k--r~LlVlDdv~~~---~~~~~l~~~l~~-~~~gskIlvTTR~~~v~~~~~~~~~~~~l 292 (1622)
+ ..-.+.+.+. .+ .-++++|+--.. ...+.+...+.. ...|..||++|.+.+... . ++.++.+
T Consensus 92 q~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~--~-~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS--S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--h-CCEEEEE
Confidence 1 1122334443 35 678888986433 222222221211 113667889998887643 2 4445544
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.35 E-value=0.19 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.4
Q ss_pred EEEEeCCCccHHHHHHHHHHHhh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|.|.|++|+||||+|+.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998775
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.34 E-value=0.56 Score=50.51 Aligned_cols=26 Identities=42% Similarity=0.436 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
-.+++|+|..|+|||||++.++.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35899999999999999999987553
No 399
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.33 E-value=0.94 Score=55.55 Aligned_cols=90 Identities=19% Similarity=0.356 Sum_probs=58.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~------ 226 (1622)
.-++|.|.+|+|||+|+.++...... .+-+.++++-+++.. ...++.+++...-... ..+++...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999887642 234788888887655 4556666655432111 11112211
Q ss_pred HHHHHHHHHHh--cCcEEEEEcCCCCh
Q 000354 227 RIMMLCNRLKR--EKKILVILDDIWTS 251 (1622)
Q Consensus 227 ~~~~l~~~l~~--~kr~LlVlDdv~~~ 251 (1622)
....+.+++.. ++++|+++||+-..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 22234556654 79999999998654
No 400
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.26 E-value=0.6 Score=52.73 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHHc-------CCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 141 IESRESILNDILDALR-------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
++|..-..+.++..+. ..+.-|++.+|..|+||.-+|+.+++...
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 5566666666666665 13455999999999999999999998764
No 401
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.19 E-value=9.6 Score=45.18 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=32.8
Q ss_pred eEEeccCCHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHHhCCChHH
Q 000354 289 NYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVAIQVANECGGLPIA 334 (1622)
Q Consensus 289 ~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~I~~~c~glPLa 334 (1622)
.++|++++.+|+..++..+.... ......+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999999888321 11133344566666667999854
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.19 E-value=1.3 Score=50.09 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=30.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCC
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1622)
-.++.|.|.+|+||||+|.+++..... .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC
Confidence 468999999999999999998765432 2356788876443
No 403
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.16 E-value=0.68 Score=61.68 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=93.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHh-h--cc-----------CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLA-K--EG-----------RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~-~--~~-----------~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 223 (1622)
.+.+++.|.|+.+.||||+.+.+.--. . .. ..|+ .++..+++..++..-+..+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHH---------
Confidence 455789999999999999999987442 1 00 1122 2233444433332222111111
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEcCCCChhh---hhhc----cCCCCCCCCCcEEEEEcCcchhhhhcCcccc--eEEecc
Q 000354 224 DSERIMMLCNRLKREKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSV 294 (1622)
Q Consensus 224 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l----~~~l~~~~~gskIlvTTR~~~v~~~~~~~~~--~~~l~~ 294 (1622)
......+...+ .++-|+++|....-.+ ...+ ...+. ..|+.+|+||...++......... ...+..
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 11112222222 4778999999865422 1222 12221 247889999999877653111111 112211
Q ss_pred CCHHHHHHHHHHHh--CCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 000354 295 LNKEEAWSLFSKVV--GNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1622)
Q Consensus 295 L~~~ea~~Lf~~~~--~~~~~~~~~~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~w~~~l~~l~~ 359 (1622)
+ ++... |...+ |.. -...|-+|++++ |+|-.|.--|.-+-......++.++..+..
T Consensus 470 -d-~~~l~-~~Ykl~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 470 -D-EETLR-PTYRLLIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred -e-cCcCc-EEEEEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 11111 11111 211 123477888877 888888888887766666668888877773
No 404
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.16 E-value=0.16 Score=49.86 Aligned_cols=23 Identities=52% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHhh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998775
No 405
>PLN02200 adenylate kinase family protein
Probab=91.07 E-value=0.5 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987654
No 406
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.03 E-value=0.5 Score=56.03 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=26.4
Q ss_pred EEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (1622)
+++.|++|+||||+|+.+.+.......+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 6789999999999999999887633333 244444433
No 407
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=4.9 Score=50.70 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=74.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
.-|.++|++|.|||-||.+++.....+ +|+|-.. +++. +.+|. ..+.++.+..+-+.-+.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~---KyIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLS---KYIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHH---HHhcc------cHHHHHHHHHHhhccCC
Confidence 358899999999999999999776532 4555443 2222 22332 34566777777776899
Q ss_pred EEEEEcCCCChh-------------hhhhccCCCC--CCCCCcEEEE-EcCcchhhhh--cCcc-cceEEeccCCHHHHH
Q 000354 241 ILVILDDIWTSL-------------DLERTGIPFG--DVHRGCKILV-TSRRRDVLVS--EMHC-QNNYCVSVLNKEEAW 301 (1622)
Q Consensus 241 ~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~gskIlv-TTR~~~v~~~--~~~~-~~~~~l~~L~~~ea~ 301 (1622)
+.+.+|..+... ..+.+...+. .+-.|--|+- |||-.-+-.. ..|. ++.+.-+.-++.|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999987652 1222222221 1234555555 5553322221 1222 233333445566777
Q ss_pred HHHHHHhC
Q 000354 302 SLFSKVVG 309 (1622)
Q Consensus 302 ~Lf~~~~~ 309 (1622)
+.|.....
T Consensus 842 ~il~~ls~ 849 (952)
T KOG0735|consen 842 EILQVLSN 849 (952)
T ss_pred HHHHHHhh
Confidence 77776653
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.99 E-value=0.58 Score=58.36 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=47.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1622)
-.++.|.|.+|+|||||+.+++....... ..++||+..+. ...+.. -+.+++...... -.....+.+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46899999999999999999987765321 35778876543 333222 233444321110 000112334444444
Q ss_pred cCcEEEEEcCCC
Q 000354 238 EKKILVILDDIW 249 (1622)
Q Consensus 238 ~kr~LlVlDdv~ 249 (1622)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 455567777663
No 409
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.97 E-value=0.63 Score=55.00 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.9
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.....+|+|+|.+|+||||++..+......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999987653
No 410
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.91 E-value=0.37 Score=49.71 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (1622)
++|.|+|..|+|||||++.+.+.... +.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 47999999999999999999999863 4566555555444
No 411
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=90.91 E-value=0.6 Score=56.88 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=52.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC-HHHHHHHHHHHhCCC-------CCCCChHHH-----
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREIADQLGLN-------FCEESDSER----- 227 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~~~~~~~~----- 227 (1622)
..++|+|..|+|||||++.++.... .+.++.+-+++... +.++.++++..-+.. ..+++....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999986432 35666666766543 455555554332111 111111111
Q ss_pred -HHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 228 -IMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 228 -~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
...+.+++. +++++|+++||+-..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 122344443 479999999998654
No 412
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.84 E-value=1 Score=56.88 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=67.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhcc-CCc-----ceEEEEEecC-----C----------c-C-HHHHHHHHHHHhCC
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-RIF-----DEVVFAEVSQ-----T----------P-D-LKRIRREIADQLGL 217 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F-----~~~~wv~vs~-----~----------~-~-~~~i~~~i~~~l~~ 217 (1622)
..|+|+|+.|+|||||.+.+....... ... -.+.++.-.. . + + .+.-.+.++.+++-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 469999999999999999997655321 000 0111211110 0 0 0 12334444555443
Q ss_pred CCCC-------CChHHHHHHHHHHHHhcCcEEEEEcCCCCh------hhhhhccCCCCCCCCCcEEEEEcCcchhhhhcC
Q 000354 218 NFCE-------ESDSERIMMLCNRLKREKKILVILDDIWTS------LDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM 284 (1622)
Q Consensus 218 ~~~~-------~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~~~ 284 (1622)
.... -+.-+...-....+.-.+.-+||||.=-+. +.+++....+ +|+ ||+.|.++..... .
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~-v 502 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDR-V 502 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHh-h
Confidence 3211 122233343444444578899999964333 3343333333 355 8899999987773 3
Q ss_pred cccceEEecc
Q 000354 285 HCQNNYCVSV 294 (1622)
Q Consensus 285 ~~~~~~~l~~ 294 (1622)
. .+++.+++
T Consensus 503 a-~~i~~~~~ 511 (530)
T COG0488 503 A-TRIWLVED 511 (530)
T ss_pred c-ceEEEEcC
Confidence 2 44555543
No 413
>PRK01184 hypothetical protein; Provisional
Probab=90.82 E-value=1.1 Score=48.88 Aligned_cols=22 Identities=50% Similarity=0.750 Sum_probs=18.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARL 183 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (1622)
.+|+|+|++|+||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 414
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=90.77 E-value=1.9 Score=52.62 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=66.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccC-----CcceEEEEEec---------------------CCcCHHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR-----IFDEVVFAEVS---------------------QTPDLKRIRREIADQ 214 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~~~~wv~vs---------------------~~~~~~~i~~~i~~~ 214 (1622)
..|++||+.|+|||||.+.++-+..... +-..++ -... ......+..+.|+.+
T Consensus 417 srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~-~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 417 SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL-PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred cceeEecCCCCchhhhHHHHhhccccccccccccccccc-hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 4689999999999999999998765321 111111 0000 012345667778888
Q ss_pred hCCCCCCC-------ChHHHHHHHHHHHHhcCcEEEEEcCCCCh---hhhhhccCCCCCCCCCcEEEEEcCcchhhh
Q 000354 215 LGLNFCEE-------SDSERIMMLCNRLKREKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1622)
Q Consensus 215 l~~~~~~~-------~~~~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gskIlvTTR~~~v~~ 281 (1622)
++...+.. ++.+....+.-++.=...-+||||.--+. +..+.+..+++.. +|. ||++|.+..+..
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~-~Gg-vv~vSHDfrlI~ 570 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF-PGG-VVLVSHDFRLIS 570 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-CCc-eeeeechhhHHH
Confidence 87763332 22222333344444468899999975544 2233333333322 344 777777765544
No 415
>PRK14532 adenylate kinase; Provisional
Probab=90.72 E-value=0.7 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHhh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999987653
No 416
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.72 E-value=0.18 Score=50.24 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=18.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHhh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|-|+|.+|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67999999999999999998875
No 417
>PRK13768 GTPase; Provisional
Probab=90.71 E-value=1 Score=51.74 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=23.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
..++.|.|.||+||||++..+......
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh
Confidence 368899999999999999999887753
No 418
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=0.035 Score=58.81 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=38.6
Q ss_pred cccccceeecccccccchhhccCccccccccccceeEeeccCCcccc-CCCCCccCCccEEEEeccCCCccc
Q 000354 1149 KLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNL-VPSSPSFRNLITLEVWYCKGLKNL 1219 (1622)
Q Consensus 1149 ~l~sL~~L~i~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l-~~~~~~l~sL~~L~I~~C~~L~~l 1219 (1622)
.+++++.|.+.+|..+....-+...+ ..++|+.|+|++|+.+++. ...+..+++|+.|.|.+-+.+..+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 44555555555555554443322222 4567777777777776543 233456677777777665544443
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=90.67 E-value=0.46 Score=51.94 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=35.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC 220 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 220 (1622)
.|+|.|-||+||||+|..++.....++.|+ +.=|+...++++. .+|+...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChH-------HhcCCCCC
Confidence 589999999999999999777765444343 4446666666544 35666543
No 420
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.64 E-value=0.3 Score=50.89 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=27.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEE
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (1622)
.||-|.|.+|+||||||+++.++.... -..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 588999999999999999999998743 2345555
No 421
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=90.62 E-value=1.3 Score=54.64 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=56.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH-----
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER----- 227 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~----- 227 (1622)
.-++|.|..|+|||||+.+++....... =+.++++-+++.. .+.++++++...-... ..+++...+
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999987765322 2467777776654 4566666665432211 111222211
Q ss_pred -HHHHHHHHH--hcCcEEEEEcCCCCh
Q 000354 228 -IMMLCNRLK--REKKILVILDDIWTS 251 (1622)
Q Consensus 228 -~~~l~~~l~--~~kr~LlVlDdv~~~ 251 (1622)
...+.++++ +++++||++||+-..
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 223445553 479999999998654
No 422
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.62 E-value=0.21 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998874
No 423
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.56 E-value=0.47 Score=53.76 Aligned_cols=56 Identities=27% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCH
Q 000354 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1622)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1622)
.+++..+. ..+..+|+|.|.+|+|||||.-++......+.+--.++=|+-|..++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 45555554 456779999999999999999999998876655555666666666653
No 424
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.55 E-value=0.9 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.|.|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987764
No 425
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.48 E-value=0.81 Score=56.78 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=49.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEE-EEEecCCc-CHHHHHHHHHHHhCCCCCCCChH------HHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV-FAEVSQTP-DLKRIRREIADQLGLNFCEESDS------ERIMMLC 232 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~------~~~~~l~ 232 (1622)
.-+.|+|.+|+|||||++.+++.... .+-++.+ .+-|.+.. .+.++.+.+-..+-......+.. .....+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999987753 2233333 34444443 23333333211111111111111 1222234
Q ss_pred HHHH-hcCcEEEEEcCCCCh
Q 000354 233 NRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 233 ~~l~-~~kr~LlVlDdv~~~ 251 (1622)
+++. +++.+||++|++-..
T Consensus 496 e~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHcCCCEEEEEeCchHH
Confidence 4443 479999999998654
No 426
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=90.45 E-value=6.3 Score=45.89 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCCe-EEEEEEeCCCccHHHHHHHHHHHhhccCCcc---e-----EEEEEecCCcCHHHHHHHHHHHhC
Q 000354 146 SILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD---E-----VVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 146 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
..++.+...+..+++ ....++| |+||+++|..++...--....+ | +..+.-+..+|+..+.
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~-------- 78 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIE-------- 78 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeec--------
Confidence 445566666665554 4666777 5899999999987653111000 0 0000111111111000
Q ss_pred CCCCCCChHHHHHHHHHHHH----hcCcEEEEEcCCCCh--hhhhhccCCCCCCCCCcEEEEEcCcc-hhhhhcCcccce
Q 000354 217 LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNN 289 (1622)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~-~v~~~~~~~~~~ 289 (1622)
. ....-..+.+..+.+.+. .+++-++|+||++.. ...+.+...+.....++.+|++|.+. .+...-......
T Consensus 79 p-~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~ 157 (290)
T PRK07276 79 P-QGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQI 157 (290)
T ss_pred C-CCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHccee
Confidence 0 000112344444444443 257779999999876 46777776666656667777777655 344422233456
Q ss_pred EEeccCCHHHHHHHHH
Q 000354 290 YCVSVLNKEEAWSLFS 305 (1622)
Q Consensus 290 ~~l~~L~~~ea~~Lf~ 305 (1622)
+.+.+ +.++..+.+.
T Consensus 158 i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 158 FHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeCCC-cHHHHHHHHH
Confidence 77765 6666555554
No 427
>PLN02924 thymidylate kinase
Probab=90.37 E-value=0.94 Score=50.67 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=35.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
-..|+|-|..|+||||+|+.+++..... .+..+.+-.........+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 3689999999999999999999998743 3444433322223334445555543
No 428
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.36 E-value=0.75 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+++|+|..|.|||||.+.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4899999999999999999987653
No 429
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.35 E-value=0.49 Score=58.04 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHHHc-------CC---------CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 140 FIESRESILNDILDALR-------GP---------YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.++|.+..++.+...+. .. ....|.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36788888776644331 10 125689999999999999999987664
No 430
>PRK08149 ATP synthase SpaL; Validated
Probab=90.34 E-value=0.79 Score=55.97 Aligned_cols=87 Identities=14% Similarity=0.276 Sum_probs=52.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLN-------FCEESDSE------ 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~~~------ 226 (1622)
..++|+|..|+|||||+..++.... -+.++...+.. ..++.++..+........ ..+++...
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 5789999999999999999986543 23444444443 334556666665543221 11111111
Q ss_pred HHHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 227 RIMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 227 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
....+.+++. +++++||++||+-..
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1222344443 479999999998554
No 431
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.33 E-value=0.51 Score=60.87 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=57.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 216 (1622)
-...+.|+++.++.|...+... +.+.|+|.+|+||||+|+.+++... ...++..+|+.- ...+...+++.+...++
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 3456789988888877766544 3688999999999999999998753 334677888644 44567777777777665
Q ss_pred CC
Q 000354 217 LN 218 (1622)
Q Consensus 217 ~~ 218 (1622)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 43
No 432
>CHL00206 ycf2 Ycf2; Provisional
Probab=90.25 E-value=0.91 Score=63.48 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.+=|.++|++|+|||.||++++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 456889999999999999999998763
No 433
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.24 E-value=0.74 Score=55.49 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHHHHcC--------------CCeEEEEEEeCCCccHHHHHHHHHHHhhccC-CcceEEEEEec-CCcCH
Q 000354 141 IESRESILNDILDALRG--------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGR-IFDEVVFAEVS-QTPDL 204 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs-~~~~~ 204 (1622)
++|.++.+..+.-.+.. ...+-|.++|++|+|||++|+.++......- ..+...++..+ ...+.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 56777766665443331 1235789999999999999999998875320 11222222222 12355
Q ss_pred HHHHHHHHHH
Q 000354 205 KRIRREIADQ 214 (1622)
Q Consensus 205 ~~i~~~i~~~ 214 (1622)
+.+++.+...
T Consensus 94 E~i~r~l~e~ 103 (441)
T TIGR00390 94 ESMVRDLTDA 103 (441)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 434
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.21 E-value=0.49 Score=55.66 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHH
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 210 (1622)
.+++.+.|.|||||||+|-+.+-...... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999877766433 44777777777666665543
No 435
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.21 E-value=0.26 Score=57.05 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHH
Q 000354 149 NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERI 228 (1622)
Q Consensus 149 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 228 (1622)
..+++.+...+ +-|.++|+.|+|||++++......... .| .+.-++++...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 44555555444 456899999999999999988654322 12 234456666555544433222221110000
Q ss_pred HHHHHHHHhcCcEEEEEcCCCCh
Q 000354 229 MMLCNRLKREKKILVILDDIWTS 251 (1622)
Q Consensus 229 ~~l~~~l~~~kr~LlVlDdv~~~ 251 (1622)
... =..+|+.++.+||+.-.
T Consensus 93 --~~g-P~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 --VYG-PPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --EEE-EESSSEEEEEEETTT-S
T ss_pred --CCC-CCCCcEEEEEecccCCC
Confidence 000 01268889999998543
No 436
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.19 E-value=1.6 Score=50.98 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=36.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 214 (1622)
.++.|.|.+|+||||+|.+++....... =..++|+++.. +..++.+.+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 4888999999999999999987764221 24578887665 345555555443
No 437
>PRK14529 adenylate kinase; Provisional
Probab=90.18 E-value=0.83 Score=50.98 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=46.2
Q ss_pred EEEEeCCCccHHHHHHHHHHHhhccCCcce-EEE-EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhcCc
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVF-AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~w-v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 240 (1622)
|.|.|++|+||||+|+.++..+... +.+. .++ -.+..........++++..-.. .++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999888632 2221 111 1222222233334444332211 1233334445566654334
Q ss_pred EEEEEcCCCCh
Q 000354 241 ILVILDDIWTS 251 (1622)
Q Consensus 241 ~LlVlDdv~~~ 251 (1622)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 56899987544
No 438
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.14 E-value=0.22 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 439
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.06 E-value=1.4 Score=53.73 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=56.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccC--Ccc---------eEEEEEecCCcCHHHHHHHHHHHhC-CC-------CCC
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR--IFD---------EVVFAEVSQTPDLKRIRREIADQLG-LN-------FCE 221 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~-------~~~ 221 (1622)
.-++|.|-.|+|||||+.++++...... ..| .++++-+++.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4689999999999999999987765100 012 5677778877655555555444433 21 111
Q ss_pred CChHH------HHHHHHHHHH--hcCcEEEEEcCCCCh
Q 000354 222 ESDSE------RIMMLCNRLK--REKKILVILDDIWTS 251 (1622)
Q Consensus 222 ~~~~~------~~~~l~~~l~--~~kr~LlVlDdv~~~ 251 (1622)
++... ....+.+++. +++++|+++||+-..
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 1223455665 479999999998544
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.01 E-value=1.2 Score=56.36 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhccCCc-ceEEEEEecCCcCHHHHHHH
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRRE 210 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~ 210 (1622)
+-+++.|.|.+|+||||+|.+++..-.. .+ ..++||++.+ +..++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~--~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII--HFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEEEEec--CHHHHHHH
Confidence 4579999999999999999999765421 12 4688888764 34444444
No 441
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.00 E-value=0.98 Score=48.95 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=64.4
Q ss_pred HHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhcc-CCcc--eEEEEEecCCcCHHHHHHHHHHHhCC--------CC
Q 000354 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFD--EVVFAEVSQTPDLKRIRREIADQLGL--------NF 219 (1622)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~--------~~ 219 (1622)
+++.+-....--..|.|++|+|||||.+.+++-.... +.|- .+.-|+-+. +|+..+.. ..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 5555555555567899999999999999999876543 2342 222222111 22221110 00
Q ss_pred CCCChHHHHHHHHHHHHhcCcEEEEEcCCCChhhhhhccCCCCCCCCCcEEEEEcCcch
Q 000354 220 CEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRD 278 (1622)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~ 278 (1622)
+..+.--..+-+...+..-..=.+|+|.+...++-.++..++. .|-+++.|..-..
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG~~ 254 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHGNG 254 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecccc
Confidence 0000001112233334445677899999999877666655544 5777777765443
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.99 E-value=0.24 Score=53.48 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 443
>PRK06217 hypothetical protein; Validated
Probab=89.99 E-value=0.23 Score=54.09 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=26.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCc--ceEEEE
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFA 196 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv 196 (1622)
.|.|.|.+|+||||+|+++...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988753 233 455563
No 444
>PHA02774 E1; Provisional
Probab=89.93 E-value=0.61 Score=58.16 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=34.8
Q ss_pred HHHHHHHHHcC-CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe
Q 000354 147 ILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1622)
Q Consensus 147 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (1622)
-+..+..++.. .+...+.|+|++|+|||.+|-.+.+-.. -..+.||+.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 34555556653 3346899999999999999999998764 234567765
No 445
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.92 E-value=0.67 Score=48.98 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1622)
.+++|+|..|.|||||++.++.... ...+.+++.-.... ...+.. ..++.-..-.......-.+...+. .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l~-~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELR----RRIGYVPQLSGGQRQRVALARALL-L 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHH----hceEEEeeCCHHHHHHHHHHHHHh-c
Confidence 5899999999999999999987553 24555655322111 112211 111111000011112222344443 4
Q ss_pred CcEEEEEcCCCCh---hhhhhccCCCCC-CCCCcEEEEEcCcchhhh
Q 000354 239 KKILVILDDIWTS---LDLERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1622)
Q Consensus 239 kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gskIlvTTR~~~v~~ 281 (1622)
..-++++|+.-.. .....+...+.. ...+..||++|.+.....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6788999987543 122222111111 112456888888776655
No 446
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=89.89 E-value=2.2 Score=50.64 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=29.8
Q ss_pred HHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.++++.+. .....+|+|.|.+|+|||||+..+....+.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444443 356789999999999999999999888764
No 447
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.87 E-value=0.21 Score=55.14 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.85 E-value=0.23 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.84 E-value=0.26 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+++|+|+.|+||||||+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 450
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.77 E-value=0.23 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 451
>PRK13947 shikimate kinase; Provisional
Probab=89.76 E-value=0.26 Score=53.00 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 452
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=89.70 E-value=1.3 Score=54.44 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=49.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh-----CCCCC-CCChHH------HH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL-----GLNFC-EESDSE------RI 228 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-----~~~~~-~~~~~~------~~ 228 (1622)
..++|+|..|+|||||++.++.... ...+++|+.-....++.++........ ..-.. +++... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4799999999999999998875443 223455554334445554444333322 11111 111111 11
Q ss_pred HHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 229 MMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 229 ~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
-.+.+++. +++++|+++||+-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 22334443 379999999998554
No 453
>PRK13949 shikimate kinase; Provisional
Probab=89.63 E-value=0.26 Score=52.75 Aligned_cols=24 Identities=46% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
-|.|+|+.|+||||+|+.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 454
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=89.59 E-value=0.62 Score=55.70 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHH
Q 000354 140 FIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARL 183 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (1622)
.++|+...+.++++.+. ...-.-|.|+|-.|+||+++|+.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46777777777777665 122235788999999999999998754
No 455
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=89.57 E-value=1.6 Score=53.44 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC-HHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREIADQLGLN-------FCEESDSE----- 226 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~~~~~~~----- 226 (1622)
-..++|+|..|+|||||++.+++... .+.++++-+++... +.+..++.+..-+.. ..+++...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987664 24555666665543 444444443332211 01111111
Q ss_pred -HHHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 227 -~~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
....+.+++. +++++|+++||+-..
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1222344443 479999999998554
No 456
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=3.6 Score=48.22 Aligned_cols=46 Identities=28% Similarity=0.282 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHHHHHc----C----------CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 140 FIESRESILNDILDALR----G----------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+.|-+..++.+.+... . ...+-|-++|++|.|||-||++++.+..
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC
Confidence 44566666666655432 0 2346788999999999999999999876
No 457
>PRK00889 adenylylsulfate kinase; Provisional
Probab=89.46 E-value=0.36 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
...+|.|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998875
No 458
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=89.42 E-value=0.49 Score=56.36 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=39.1
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
...++|.++.+..++-.+.+....-|.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999998888777767666678899999999999999998765
No 459
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=89.40 E-value=0.85 Score=60.67 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=35.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 139 EFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
..++|+...+..+.+.+. ...-.-|.|+|..|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 357788877777766654 2223468899999999999999998765
No 460
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=89.40 E-value=0.54 Score=55.16 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe-cCCcC------HHH
Q 000354 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV-SQTPD------LKR 206 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-s~~~~------~~~ 206 (1622)
.|+|.++.++++++.+. +.+.+|+.++|+.|.||||||..+.+-.+. | .+|.-. +...+ +.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~~ 136 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPKE 136 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCHh
Confidence 68999999999999987 456789999999999999999999887763 2 334322 11111 344
Q ss_pred HHHHHHHHhCCCCCCC
Q 000354 207 IRREIADQLGLNFCEE 222 (1622)
Q Consensus 207 i~~~i~~~l~~~~~~~ 222 (1622)
.-+++.+.++....++
T Consensus 137 ~r~~~~~~~~~~i~g~ 152 (358)
T PF08298_consen 137 LRREFEDELGIRIEGE 152 (358)
T ss_pred HHHHHHHHhCcccCCC
Confidence 5555666666654443
No 461
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=7.2 Score=42.97 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.9
Q ss_pred CCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+..+-|-++.++++++.+. . ...+-|..+|++|.|||-+|++.+....
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 345567788999999998764 1 2345688999999999999999887654
No 462
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=89.35 E-value=0.77 Score=59.45 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=49.5
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000354 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1622)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 217 (1622)
...++|+++.++.+...+.... .+.++|++|+||||+|+.+++..... .|..++++ .....+...+++.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~-~n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVY-PNPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEE-eCCCCCchHHHHHHHHhhch
Confidence 3457788888877777665443 56699999999999999999877532 33333322 22233444556666666553
No 463
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=89.31 E-value=0.36 Score=51.35 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999988764
No 464
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=89.31 E-value=1.2 Score=51.46 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=40.4
Q ss_pred ccccccHHHHHH---HHHHHHcCC--CeEEEEEEeCCCccHHHHHHHHHHHhhccCCcc
Q 000354 138 HEFIESRESILN---DILDALRGP--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1622)
Q Consensus 138 ~~~~~gR~~~~~---~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 191 (1622)
..+++|..+..+ -+++++... .-+.|.|+|++|.|||+||-.+.+..-..-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 346788765543 355666543 347899999999999999999999987666664
No 465
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=89.28 E-value=2 Score=52.73 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=57.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~------ 226 (1622)
.-++|.|..|+|||||+.++....... +=+.++++-+++.. .+.++++++...-... ..+++...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998776522 22467777776654 4566666665432111 11122222
Q ss_pred HHHHHHHHHHh--cCcEEEEEcCCCCh
Q 000354 227 RIMMLCNRLKR--EKKILVILDDIWTS 251 (1622)
Q Consensus 227 ~~~~l~~~l~~--~kr~LlVlDdv~~~ 251 (1622)
....+.++++. ++++|||+||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 22234556643 68999999999654
No 466
>PTZ00185 ATPase alpha subunit; Provisional
Probab=89.27 E-value=2.1 Score=52.80 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=53.3
Q ss_pred EEEEEEeCCCccHHHHH-HHHHHHhhcc-----CCcceEEEEEecCCcCHHHHHHHHHHHhC-CCC-------CCCChHH
Q 000354 161 YMIGVYGMAGIGKTTLV-KEVARLAKEG-----RIFDEVVFAEVSQTPDLKRIRREIADQLG-LNF-------CEESDSE 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~~-------~~~~~~~ 226 (1622)
.-++|.|-.|+|||+|| -.+.+...+. +.-+.++++-+++..+.-.-+.+.++.-+ .+. ..++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46799999999999997 5566665321 23467888888877653332333333332 111 1111111
Q ss_pred ------HHHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 227 ------RIMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 227 ------~~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
..-.+.+.+. +++.+|||+||+-..
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1122334443 479999999998654
No 467
>PRK13975 thymidylate kinase; Provisional
Probab=89.21 E-value=0.33 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=23.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999886
No 468
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.20 E-value=1.4 Score=49.96 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
-.+++|+|+.|+|||||.+.++.-..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999988544
No 469
>PRK14531 adenylate kinase; Provisional
Probab=89.10 E-value=0.92 Score=49.34 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+.|.|.|++|+||||+|+.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 470
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.06 E-value=0.31 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|+|.|..|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 471
>PRK14530 adenylate kinase; Provisional
Probab=89.04 E-value=0.31 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.|.|+|++|+||||+|+.++....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988774
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.00 E-value=0.6 Score=51.94 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.2
Q ss_pred HHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 153 ~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+.+.+.++++|+++|..|+|||||..++.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344467899999999999999999999988754
No 473
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=89.00 E-value=1.8 Score=53.50 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=56.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCc--ceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH----
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE---- 226 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~---- 226 (1622)
.-++|.|-.|+|||||+.++++.......+ ..++++-+++.. .+.++++++...-.... .+++...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 468999999999999999999876532112 156667776554 45666666654322110 1111111
Q ss_pred --HHHHHHHHHH--hcCcEEEEEcCCCCh
Q 000354 227 --RIMMLCNRLK--REKKILVILDDIWTS 251 (1622)
Q Consensus 227 --~~~~l~~~l~--~~kr~LlVlDdv~~~ 251 (1622)
....+.+++. +++++||++||+-..
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 2223556666 489999999998654
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.93 E-value=0.33 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHhh
Q 000354 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 475
>COG4240 Predicted kinase [General function prediction only]
Probab=88.86 E-value=2.4 Score=45.89 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=55.5
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhC-----CCCCCCChHHHHHHH
Q 000354 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG-----LNFCEESDSERIMML 231 (1622)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-----~~~~~~~~~~~~~~l 231 (1622)
.++.-+++|.|+-|+||||+|..+++....+.. ..+...++.+-+-...-+-.++++.. ...++.-+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 355679999999999999999999998875433 46666666666555555555666642 123334455566667
Q ss_pred HHHHHhcC
Q 000354 232 CNRLKREK 239 (1622)
Q Consensus 232 ~~~l~~~k 239 (1622)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776655
No 476
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=88.81 E-value=1.5 Score=54.30 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=56.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC--------------CCCChH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF--------------CEESDS 225 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------------~~~~~~ 225 (1622)
.-++|.|-.|+|||||+.++....... +=+.++++-+++.. ...+++..+...-.... ..++..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 468999999999999999998874311 12778888887664 45666666655211110 011111
Q ss_pred ------HHHHHHHHHHHh-cC-cEEEEEcCCCCh
Q 000354 226 ------ERIMMLCNRLKR-EK-KILVILDDIWTS 251 (1622)
Q Consensus 226 ------~~~~~l~~~l~~-~k-r~LlVlDdv~~~ 251 (1622)
-....+.++++. ++ ++||++||+-..
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 122235566654 44 999999998654
No 477
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=88.77 E-value=1.3 Score=54.15 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=34.3
Q ss_pred ccccHHHHHHHHHHHHc-------C-------C----CeEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 140 FIESRESILNDILDALR-------G-------P----YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~-------~----~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
.++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46788888877765441 1 1 124789999999999999999997664
No 478
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=2 Score=48.06 Aligned_cols=93 Identities=26% Similarity=0.275 Sum_probs=56.4
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcC
Q 000354 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1622)
.+.++-|-+..+++|.+..+ . ...+=|.++|.+|.|||-||++|+|.-... |=.++
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvv--------- 251 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVV--------- 251 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhh---------
Confidence 34556677777777776643 1 234568899999999999999999877632 31111
Q ss_pred HHHHHHHH-HHHhCCCCCCCChHHHHHHHHHHHHhcCcEEEEEcCCCC
Q 000354 204 LKRIRREI-ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWT 250 (1622)
Q Consensus 204 ~~~i~~~i-~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 250 (1622)
-.++ -.+++. ....+..+.+.-.....-++++|.++.
T Consensus 252 ----GseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 252 ----GSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ----hHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhhh
Confidence 1111 122331 223455555555556677777787653
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.71 E-value=0.29 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998754
No 480
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=5.2 Score=48.53 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=45.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHh
Q 000354 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1622)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1622)
..++-+-+.|++|.|||.||++|+...... +++++.. .+...+.++. ...+..+...-+.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas------------sLtsK~~Ge~-eK~vralf~vAr~ 243 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISAS------------SLTSKYVGES-EKLVRALFKVARS 243 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce-------EeeccHH------------HhhhhccChH-HHHHHHHHHHHHh
Confidence 456667799999999999999999887632 3333321 2222223222 2233333333334
Q ss_pred cCcEEEEEcCCCCh
Q 000354 238 EKKILVILDDIWTS 251 (1622)
Q Consensus 238 ~kr~LlVlDdv~~~ 251 (1622)
.+...+++|+++..
T Consensus 244 ~qPsvifidEidsl 257 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSL 257 (428)
T ss_pred cCCeEEEechhHHH
Confidence 57888889998654
No 481
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=88.51 E-value=0.9 Score=55.28 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
..++.+++.+.......+.|.|.||+|||++.+++.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 44566666666556678899999999999999999988864
No 482
>PF13245 AAA_19: Part of AAA domain
Probab=88.51 E-value=0.85 Score=41.43 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=18.5
Q ss_pred CeEEEEEEeCCCccHHHHHHH-HHHHh
Q 000354 159 YVYMIGVYGMAGIGKTTLVKE-VARLA 184 (1622)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~-v~~~~ 184 (1622)
+.+++.|.|.+|.|||+++.. +.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788899999999955544 44444
No 483
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=88.49 E-value=0.58 Score=49.24 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEE
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (1622)
|++|+|+.|+||||++.++....+. ..+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 5899999999999999999998863 345544443
No 484
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=88.49 E-value=1.6 Score=56.39 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred CccccccHHHHHHHHHHHHc--CCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
....++|+...+.++++.+. ...-.-|.|+|..|+|||++|+.+.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34568898888888887765 2223357799999999999999998764
No 485
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=88.47 E-value=0.44 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999887766
No 486
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.34 E-value=0.73 Score=46.73 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhc
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (1622)
.+|.+.|.-|+||||+++.+++....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 48999999999999999999988653
No 487
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.33 E-value=1.7 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+|+|.|..|+||||+|+.+....+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998775
No 488
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=88.33 E-value=0.57 Score=55.69 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=37.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+...++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 345678999988877755544444568999999999999999998764
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.30 E-value=0.38 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..|.|+|+.|+||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999998764
No 490
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=88.29 E-value=0.77 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEeCCCccHHHHHHHHHHHhh
Q 000354 165 VYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 165 I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
|+|++|+||||+|+.++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 789999999999999998874
No 491
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=88.19 E-value=0.51 Score=51.37 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=29.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEe
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (1622)
.++|.|+|+.|+|||||++.+..... ..|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 36899999999999999999998875 45755555543
No 492
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=88.16 E-value=0.45 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
..+|.|.|.+|+||||+|+.++.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 493
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=88.15 E-value=2.3 Score=48.68 Aligned_cols=95 Identities=11% Similarity=0.182 Sum_probs=54.8
Q ss_pred EEEEEEeCCCccHHHHH-HHHHHHhhccCCcceE-EEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH---
Q 000354 161 YMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEV-VFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER--- 227 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~--- 227 (1622)
.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++++++...-..+ ..+++....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 5555432 23444 666666654 4566666665432111 111111111
Q ss_pred ---HHHHHHHHH-hcCcEEEEEcCCCCh-hhhhhccC
Q 000354 228 ---IMMLCNRLK-REKKILVILDDIWTS-LDLERTGI 259 (1622)
Q Consensus 228 ---~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~l~~ 259 (1622)
.-.+.+++. +++.+|||+||+-.. ..+..+..
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl 182 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSL 182 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHH
Confidence 222334443 379999999999665 44555543
No 494
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=88.14 E-value=3.4 Score=47.16 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=35.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 213 (1622)
.++.|.|.+|+|||++|.+++.+...... ..++|++... +..++...+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHH
Confidence 58999999999999999999877653312 3567766554 45566666543
No 495
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=88.01 E-value=1.3 Score=47.51 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=30.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000354 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 215 (1622)
+|.|.|.+|+||||+|..++..... .++++.-.... ..+..+.|....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHHH
Confidence 6899999999999999999876431 23344333333 334555554433
No 496
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.96 E-value=0.39 Score=50.01 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHH
Q 000354 162 MIGVYGMAGIGKTTLVKEVA 181 (1622)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~ 181 (1622)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 497
>PRK06936 type III secretion system ATPase; Provisional
Probab=87.91 E-value=2 Score=52.66 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=53.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHhhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH----
Q 000354 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER---- 227 (1622)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~---- 227 (1622)
-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++.+..+..-+.. ..+++...+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987654 3567777777654 3444444433221111 011111111
Q ss_pred --HHHHHHHHH-hcCcEEEEEcCCCCh
Q 000354 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1622)
Q Consensus 228 --~~~l~~~l~-~~kr~LlVlDdv~~~ 251 (1622)
...+.+++. +++++|+++||+-..
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122344443 489999999998654
No 498
>PRK13946 shikimate kinase; Provisional
Probab=87.90 E-value=0.39 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=23.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHhh
Q 000354 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1622)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (1622)
+.|.++|+.|+||||+|+.++++..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998874
No 499
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=1.8 Score=47.33 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=32.8
Q ss_pred cCcEEEEEcCCCChhhhhhccC---CCCC-CCCCcEEEEEcCcchhhhhcCcccceE
Q 000354 238 EKKILVILDDIWTSLDLERTGI---PFGD-VHRGCKILVTSRRRDVLVSEMHCQNNY 290 (1622)
Q Consensus 238 ~kr~LlVlDdv~~~~~~~~l~~---~l~~-~~~gskIlvTTR~~~v~~~~~~~~~~~ 290 (1622)
-+.-+.|||..++--|.+++.. -+.. ..+|+-+||.|....++.. ...+.++
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~-i~pD~vh 216 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDY-IKPDKVH 216 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhh-cCCCEEE
Confidence 3778999999887654444321 1100 2347779999999998884 5444443
No 500
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=87.86 E-value=0.6 Score=48.96 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCeEEEEEEeCCCccHHHHHHHHHHHh
Q 000354 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1622)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (1622)
+++|.+.|.+ ++++++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777754 689999999999999999998654
Done!