Query 000354
Match_columns 1622
No_of_seqs 602 out of 6658
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 23:19:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000354.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_4-8//hhsearch_pdb/000354hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 399.7 21.3 307 142-471 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 365.8 29.0 311 134-469 119-451 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 337.2 30.2 682 488-1333 50-765 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 331.3 24.0 282 141-463 130-436 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 325.1 33.8 641 510-1305 50-723 (768)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 302.5 30.1 306 136-468 121-450 (591)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 301.8 41.4 176 491-680 7-188 (680)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 293.3 40.4 174 486-672 23-204 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 285.3 34.1 176 491-678 14-196 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 282.3 38.8 176 490-679 14-195 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=399.71 Aligned_cols=307 Identities=16% Similarity=0.149 Sum_probs=240.3
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEEEEECCCCCHHHHHHHHHH--HHHCCCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 0179999999999739---9919999990798609999999999--96116776619999926996--999999999999
Q 000354 142 ESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVAR--LAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQ 214 (1622)
Q Consensus 142 ~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 214 (1622)
+||+.++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHCCC
Q ss_conf 379888--------9992999999999998039-4799975778801020105888889998189998385012210176
Q 000354 215 LGLNFC--------EESDSERIMMLCNRLKREK-KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMH 285 (1622)
Q Consensus 215 l~~~~~--------~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~~~~~ 285 (1622)
++.... ..+.......+.+.+. ++ ||||||||||+.+++. + + ..+||+||||||+..++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~~-~----~-~~~gs~ilvTTR~~~v~~~-~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETIR-W----A-QELRLRCLVTTRDVEISNA-AS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHHH-H----H-HHTTCEEEEEESBGGGGGG-CC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHC-C----C-CCCCCEEEEECCCHHHHHH-CC
T ss_conf 853755345555331469999999999976-8984899997999714415-4----3-2699889997497799997-08
Q ss_pred -CCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf -6513993169988899999987189999950699999999992898299999999960799336999999998410488
Q 000354 286 -CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNF 364 (1622)
Q Consensus 286 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~~~~~~ 364 (1622)
...+|+|++|+.+|+|+||.++++.....++..+++++|+++|+|+||||+++|+.++.+. |+.+ +.+....+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---HHHH-HHHHHHHHCC
T ss_conf 89738989998989999999987448998556899999999995998399999999844344---8999-8757876136
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHCC--CCCCCC---HHHHHHH
Q ss_conf 8857889999999861489514799997-----------60335778881188899872024--533330---1099999
Q 000354 365 TGLEALLGSTIELIYNYLEGEELKLTFL-----------LCSLMKHPCDAPIMDLLKYGTGL--GLFEDI---YTMQERR 428 (1622)
Q Consensus 365 ~~~~~i~~~~l~~sy~~L~~~~lk~~fl-----------~~alfp~~~~~~i~~li~~w~~~--g~~~~~---~~~~~~~ 428 (1622)
....+. .++.+||+.|+.+ +|.||+ |||+||++++++ +..|+++ ||+... .+.++++
T Consensus 359 -~~~~i~-~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 -GLVGVE-CITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -CSSTTC-CCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred -CHHHHH-HHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHH
T ss_conf -477789-8975162022679-99997526522336743235608997666----5331101355002677899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC--CCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 99999999774115556799--97809932358999999875321
Q 000354 429 DRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIASINL 471 (1622)
Q Consensus 429 ~~~~~~l~~L~~~~Li~~~~--~~~~~~mHdlir~~a~~~~~~~~ 471 (1622)
+ ++++|++++|++..+ ...+|+|||+||+||++++.+..
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9----9999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=365.81 Aligned_cols=311 Identities=21% Similarity=0.251 Sum_probs=242.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEEECCCCCHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCC--HHHH
Q ss_conf 77875441017999999999973--999199999907986099999999999611-6776-6199999269969--9999
Q 000354 134 YNEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPD--LKRI 207 (1622)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i 207 (1622)
.+.....|+||+.++++|.++|. ++..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 79998641257999999999986135887779999189888889999986075678862788179999788572679999
Q ss_pred HHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 99999993798889-----992999999999998039--47999757788010201058888899981899983850122
Q 000354 208 RREIADQLGLNFCE-----ESDSERIMMLCNRLKREK--KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVL 280 (1622)
Q Consensus 208 ~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~ 280 (1622)
+..++..+...... .........+...+ .++ |+||||||||+..+|..+ .+||+||||||++.++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHH
T ss_conf 999999865530333478877789999999997-35678789999567997788763-------6897899992778998
Q ss_pred HHCCCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 10176651399316-99888999999871899999506999999999928982999999999607993369999999984
Q 000354 281 VSEMHCQNNYCVSV-LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1622)
Q Consensus 281 ~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~ 359 (1622)
...++....+.+++ |+.+|+|+||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|+.+++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHH
T ss_conf 76348843798258888788999999865798--134838899999984997799999999862480-579999999865
Q ss_pred HCCCC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10488------885788999999986148951479999760335778881188899872024533330109999999999
Q 000354 360 SARNF------TGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYA 433 (1622)
Q Consensus 360 ~~~~~------~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~alfp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~ 433 (1622)
..+.. ...+.+. .++.+||+.|+++ +|.||+|||+||+++.++...++..|.+++ +.+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~-~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~ 413 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVED 413 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHH-HHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred HHHHHCCCCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHHH
T ss_conf 044303465564467799-9999899867999-999999728137997518999998858988------------89999
Q ss_pred HHHHHHHCCCCCCCCCC--CEEEECHHHHHHHHHHHHH
Q ss_conf 99977411555679997--8099323589999998753
Q 000354 434 LVRGLKDTCLLHDDDTA--DWFSMLGFVRNVAISIASI 469 (1622)
Q Consensus 434 ~l~~L~~~~Li~~~~~~--~~~~mHdlir~~a~~~~~~ 469 (1622)
++++|++++|++..... .+|+|||+||+|++..+.+
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 99999744633896379811899668999998745067
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=337.16 Aligned_cols=682 Identities=15% Similarity=0.046 Sum_probs=329.3
Q ss_pred CCCCEEEECCCCCCC----CCCCC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCC-CCCC--CCCCCCC
Q ss_conf 454289910468899----89988-89973199825999998889022359997009996387674-4684--5899998
Q 000354 488 KNCIAIFLHDINTGE----LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPS--SFCHLPN 559 (1622)
Q Consensus 488 ~~~r~Lsl~~~~~~~----lp~~~-~~~~Lr~L~L~~n~~~~~ip~~~f~~l~~LrvL~Ls~~~i~-~LP~--~i~~L~~ 559 (1622)
.+++.+.+.++.+.. ++..+ .+++|+.+.+..+.. ..+|.. |..+++|++|+|++|.+. .+|. .++.+.+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~-~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE-EECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC-CCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 9278987789986775576696573168022467868886-787033-24578899898989857870789678727889
Q ss_pred CCEEECCCCCCCCC--C-CCCCCCCCCEEECCCCCCCCC-CHH---HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 86998227788996--3-337999989998017998535-533---2068999999833898988549110389998979
Q 000354 560 LESLCLDQCILGDI--A-IIGNLKNLEILSLCCSDIEQL-PRE---IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEE 632 (1622)
Q Consensus 560 Lr~L~Ls~~~l~~l--~-~i~~L~~L~~LdLs~~~i~~L-P~~---i~~L~~L~~L~L~~~~~l~~ip~~~i~~L~~L~~ 632 (1622)
|++|+|++|.+... . .++++.+|++|+++++.+... |.. +.++++|++|++++|. +..... +.++++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCE
T ss_conf 99898968826774797785638899989897983588587155664358988989897880-346578--454786898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99107755432244431135658362089999889997524997789400012345317873343589998887541002
Q 000354 633 LYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKL 712 (1622)
Q Consensus 633 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~L 712 (1622)
|++++|.+. . .+..++.+++|+.|++..+.....
T Consensus 205 L~Ls~n~l~-----------~-~~~~l~~l~~L~~L~Ls~n~l~~~---------------------------------- 238 (768)
T 3rgz_A 205 LDVSSNNFS-----------T-GIPFLGDCSALQHLDISGNKLSGD---------------------------------- 238 (768)
T ss_dssp EECCSSCCC-----------S-CCCBCTTCCSCCEEECCSSCCCSC----------------------------------
T ss_pred EECCCCCCC-----------C-CCCCCCCCCCCCEEECCCCCCCCC----------------------------------
T ss_conf 989288278-----------8-771112699999897948858781----------------------------------
Q ss_pred CCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 48987654888721034454303688997310001276876412213223234405623654322368688748486114
Q 000354 713 KLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHN 792 (1622)
Q Consensus 713 ~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~Lk~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~ 792 (1622)
.+..+..+++|+.|++.++..... .+.. .+++|++|.+.+|.....++... ...+++|+.|.+.+
T Consensus 239 -------~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~---~l~~L~~L~L~~n~l~~~ip~~~----~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 239 -------FSRAISTCTELKLLNISSNQFVGP-IPPL---PLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDLSG 303 (768)
T ss_dssp -------HHHHTTTCSSCCEEECCSSCCEES-CCCC---CCTTCCEEECCSSEEEESCCCCS----CTTCTTCSEEECCS
T ss_pred -------CCHHHHCCCCCCEEECCCCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCCHHH----HHHCCCCCEEECCC
T ss_conf -------657774488889898988866571-6724---36878989791785577258888----84468688998968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54633200377761123542389991289988788800006999833998613755202203578888788765543345
Q 000354 793 LIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFG 872 (1622)
Q Consensus 793 l~~L~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~Le~L~L~~c~~L~~i~~~~~~~~~~~~~~~~~~~p 872 (1622)
+.-...+ +...+.+++|+.|.+.+|.-...++. ..+..+++|+.|++++|.....++. .+..++
T Consensus 304 n~l~~~~---p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~ 367 (768)
T 3rgz_A 304 NHFYGAV---PPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLS 367 (768)
T ss_dssp SEEEECC---CGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHT
T ss_pred CCCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCH------------HHHHHH
T ss_conf 9677842---36775587766778978852573797-8872488887884847843762309------------898632
Q ss_pred -CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf -4438872678773211346678777799988876543456544100133464322589988877887653499981258
Q 000354 873 -QLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSE 951 (1622)
Q Consensus 873 -~L~~L~L~~cp~L~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~ 951 (1622)
+|+.|.+.++.-...+... .....+++|+.|++.+|.+....+..+ ..+++|+.|++++|
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~--------------~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~N- 428 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPN--------------LCQNPKNTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFN- 428 (768)
T ss_dssp TTCSEEECCSSEEEEECCTT--------------TTCSTTCCCCEEECCSSEEEEECCGGG----GGCTTCCEEECCSS-
T ss_pred CCCCEEECCCCCCCCCCCHH--------------HHHCCCCCCCEEECCCCCCCCCCCHHH----HCCCCCCEEECCCC-
T ss_conf 27719986278747876766--------------653324776189897784654248777----56898798989588-
Q ss_pred CCCCCCCCHHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 83212771356411588389994047730000244576554410158647001257875342258854346877556898
Q 000354 952 KIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEV 1031 (1622)
Q Consensus 952 ~L~~l~~~~~l~~l~sL~~L~I~~C~~L~~i~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~~~~~~sL~~L~I 1031 (1622)
.++...| ..+..+++|+.|++++|.-...++.. ...+++|+.|.+++|.....++... ..+++|+.|++
T Consensus 429 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L 497 (768)
T 3rgz_A 429 YLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQE--------LMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISL 497 (768)
T ss_dssp EEESCCC-GGGGGCTTCCEEECCSSCCCSCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred CCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHH--------HCCCCCCEEEEECCCCCCCCCCHHH--HCCCCCCEEEC
T ss_conf 4668546-77744998898989788154718978--------8287773299901995137588788--16998998975
Q ss_pred ECCCCCEEECCCCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-
Q ss_conf 1688511414555568875000014765443102233305673027732766422123678754456651999740799-
Q 000354 1032 YGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKS- 1110 (1622)
Q Consensus 1032 ~~C~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~- 1110 (1622)
.+|.-...++. ....+++|+.|+++++.+....+..+ ..+++|+.|++++|.+
T Consensus 498 ~~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 498 SNNRLTGEIPK------------------------WIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CSSCCCSCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCCH------------------------HHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCCEEECCCCCCC
T ss_conf 39951896876------------------------88568999989897894337488777--08898998989888468
Q ss_pred CCCCHHHHHHCCCCCEEEEE-CCCEEEEECCC---------------H-HHHCCCCCCCCCEEECCCCCCCCHHHCCCCC
Q ss_conf 98618788312765369998-35126970150---------------1-3211143343150331455465031215864
Q 000354 1111 DNFPICFLQYFKNLEKLELR-WSSYKQIFSYK---------------E-AEKHAGKLTHIKSLKLWELSDLMYLWNQGFK 1173 (1622)
Q Consensus 1111 ~~~p~~~l~~l~~L~~L~I~-c~~l~~i~~~~---------------~-~~~~~~~l~sL~~L~i~~c~~L~~i~~~~~~ 1173 (1622)
..+|...+. ...+..+.+. +..+..+.... + .......++.+..+.+... .+....+.
T Consensus 552 g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~g~~~~ 626 (768)
T 3rgz_A 552 GTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR----VYGGHTSP 626 (768)
T ss_dssp SBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC----EEEEECCC
T ss_pred CCCCHHHHC-CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC----EECCCCCH
T ss_conf 827957860-4212232013454211113444322223322210013556323200232110011331----00462743
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53001445413762267865458898766784499983467875435445662002456888914555210023666544
Q 000354 1174 LDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVA 1253 (1622)
Q Consensus 1174 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~ 1253 (1622)
....+++|+.|+++++.-...+|..+..+++|+.|+++++ ++....+ .....+++|+.|+++++..-..++.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~------ 698 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ------ 698 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSSCCEECCCG------
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCH------
T ss_conf 3403356657978588015558778841415787848688-0388789-6784777899898978802386886------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf 45322243251012213223411489741127985557852576442457887778763489905687754334882699
Q 000354 1254 EDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRESNTPKLQEVRQNWGLDKGCWEGGLNAT 1333 (1622)
Q Consensus 1254 ~~~~~~~sL~~L~L~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~l~slp~~~~~~p~L~~~~~~~~~~~~~~~~~~~~~ 1333 (1622)
....+++|+.|++++++--..+|.+.. +.++....+.++|.+--.| +. .|....+++|+++.|....
T Consensus 699 -~l~~l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~--------l~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 699 -AMSALTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP--------LP-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp -GGGGCCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT--------SC-CCCSCC-------------
T ss_pred -HHHCCCCCCEEECCCCCCCCCCCCCHH---HCCCCHHHHCCCCHHCCCC--------CC-CCCCCCCCCCCCCCCCCCC
T ss_conf -775788789787968815560899601---0248977756983210887--------76-7888766888988876566
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=331.31 Aligned_cols=282 Identities=19% Similarity=0.154 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 10179999999999739-99199999907986099999999999611677661-99999269969999999999993798
Q 000354 141 IESRESILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIADQLGLN 218 (1622)
Q Consensus 141 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~ 218 (1622)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred ---CCC--C---CHH----HHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHCC
Q ss_conf ---889--9---929----99999999998--039479997577880102010588888999818999838501221017
Q 000354 219 ---FCE--E---SDS----ERIMMLCNRLK--REKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM 284 (1622)
Q Consensus 219 ---~~~--~---~~~----~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~~~~ 284 (1622)
... . ... .....+...+. .++|+||||||||+.+.|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHH-C
T ss_conf 721022001346799999999999999998504788799871868189998647-------98299994437379986-6
Q ss_pred CCCCEEEEC------CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CHHHHHHHHH
Q ss_conf 665139931------69988899999987189999950699999999992898299999999960799--3369999999
Q 000354 285 HCQNNYCVS------VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKP--LFVWKKALQE 356 (1622)
Q Consensus 285 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ia~~L~~~~--~~~w~~~l~~ 356 (1622)
.....++|+ +|+.+|+|+||.+..+.. . .++..+| |+|+||||+++|+.|+.+. ...|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--8---9999999---6989999999999984889979998669---
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9841048888578899999998614895147-999976033577888118889987202453333010999999999999
Q 000354 357 LRFSARNFTGLEALLGSTIELIYNYLEGEEL-KLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALV 435 (1622)
Q Consensus 357 l~~~~~~~~~~~~i~~~~l~~sy~~L~~~~l-k~~fl~~alfp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l 435 (1622)
....+. .+|++||+.|+++ . |+||++||+||+++.+....++.+|+++|. +.+..++
T Consensus 351 ---------~~~~I~-aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L 408 (1221)
T 1vt4_I 351 ---------NCDKLT-TIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVV 408 (1221)
T ss_dssp ---------SCHHHH-HHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHH
T ss_pred ---------CHHHHH-HHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-----------HHHHHHH
T ss_conf ---------861899-9999999848899-99999999717799998779999987667788-----------9999999
Q ss_pred HHHHHCCCCCCCCCCCEEEECHHHHHHH
Q ss_conf 9774115556799978099323589999
Q 000354 436 RGLKDTCLLHDDDTADWFSMLGFVRNVA 463 (1622)
Q Consensus 436 ~~L~~~~Li~~~~~~~~~~mHdlir~~a 463 (1622)
++|++++|++..+....|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 9999619889868999898609999985
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=325.07 Aligned_cols=641 Identities=15% Similarity=0.059 Sum_probs=402.8
Q ss_pred CCCCEEECCCCCCCCC---CCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-C-C--CCCCCCCC
Q ss_conf 9731998259999988---89022359997009996387674468458999988699822778899-6-3--33799998
Q 000354 510 PHLTSLCMNPKDPFLH---IPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGD-I-A--IIGNLKNL 582 (1622)
Q Consensus 510 ~~Lr~L~L~~n~~~~~---ip~~~f~~l~~LrvL~Ls~~~i~~LP~~i~~L~~Lr~L~Ls~~~l~~-l-~--~i~~L~~L 582 (1622)
.+++.|++.++...+. ++.. |..+++|++++++.+.+..+|..++.+.+|++|+|++|.+.. + . .++++.+|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHH-HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 92789877899867755766965-73168022467868886787033245788998989898578707896787278899
Q ss_pred CEEECCCCCCC-CCCHHH-HCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99980179985-355332-068999999833898988549110---3899989799910775543224443113565836
Q 000354 583 EILSLCCSDIE-QLPREI-GELTQLKLLDLSNCSKLKVIPPNV---ISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1622)
Q Consensus 583 ~~LdLs~~~i~-~LP~~i-~~L~~L~~L~L~~~~~l~~ip~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1622)
++|++++|.+. ..|..+ .++++|++|++++|. +...+... +.++++|++|++++|.+.. ..
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~ 194 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISG-------------DV 194 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEES-------------CC
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCCCCC-------------CC
T ss_conf 9898968826774797785638899989897983-588587155664358988989897880346-------------57
Q ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCC
Q ss_conf 20899998899975249977894000123453178733435899988875410024898765488872103445430368
Q 000354 658 ELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDE 737 (1622)
Q Consensus 658 ~L~~L~~L~~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~L~~~~~l~~~~~~~~l~~L~~L~L~~ 737 (1622)
.+..+++|+.|++..+........ +..+++|+.|++.+
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPF------------------------------------------LGDCSALQHLDISG 232 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCB------------------------------------------CTTCCSCCEEECCS
T ss_pred CCCCCCCCCEEECCCCCCCCCCCC------------------------------------------CCCCCCCCEEECCC
T ss_conf 845478689898928827887711------------------------------------------12699999897948
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCEEE
Q ss_conf 899731000127687641221322323440562365432236868874848611454633200377761-1235423899
Q 000354 738 VPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTA-EFFSKLRIIK 816 (1622)
Q Consensus 738 ~~~~~~~l~~l~~~~l~~Lk~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~l~~L~~~~~~~~~~-~~l~~L~~L~ 816 (1622)
+.........+ ..+++|++|.+.+|.....++ ...+++|+.|.+.++.-...+. ... ..+++|+.|.
T Consensus 233 n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~ip---~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 233 NKLSGDFSRAI--STCTELKLLNISSNQFVGPIP-------PLPLKSLQYLSLAENKFTGEIP---DFLSGACDTLTGLD 300 (768)
T ss_dssp SCCCSCHHHHT--TTCSSCCEEECCSSCCEESCC-------CCCCTTCCEEECCSSEEEESCC---CCSCTTCTTCSEEE
T ss_pred CCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCC-------CCCCCCCCEEECCCCCCCCCCC---HHHHHHCCCCCEEE
T ss_conf 85878165777--448888989898886657167-------2436878989791785577258---88884468688998
Q ss_pred EECCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 91289988788800006999833998613755202203578888788765543345443887267877321134667877
Q 000354 817 VRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSD 896 (1622)
Q Consensus 817 L~~C~~L~~l~~~~~~~~L~~Le~L~L~~c~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~cp~L~~i~~~~~~~~ 896 (1622)
+.+|.-...++ ..+..+++|+.|++.+|.....++.. .+..+++|+.|.+.++.-...++
T Consensus 301 Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~ip~~-----------~l~~l~~L~~L~Ls~n~l~~~~p------- 360 (768)
T 3rgz_A 301 LSGNHFYGAVP--PFFGSCSLLESLALSSNNFSGELPMD-----------TLLKMRGLKVLDLSFNEFSGELP------- 360 (768)
T ss_dssp CCSSEEEECCC--GGGGGCTTCCEEECCSSEEEEECCHH-----------HHTTCTTCCEEECCSSEEEECCC-------
T ss_pred CCCCCCCCCCC--HHHHCCCCCCEEECCCCCCCCCCCHH-----------HHHCCCCCCEEECCCCCCCCCCC-------
T ss_conf 96896778423--67755877667789788525737978-----------87248888788484784376230-------
Q ss_pred CCCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEC
Q ss_conf 7799988876543456-544100133464322589988877887653499981258832127713564115883899940
Q 000354 897 ELDTPKPLFNERVVFP-NLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICH 975 (1622)
Q Consensus 897 ~~~~~~~~~~~~~~fp-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~l~~l~sL~~L~I~~ 975 (1622)
.....++ +|+.|+++++.+.......... ..+++|+.|++++|. ++...| ..+..+++|+.|++++
T Consensus 361 ---------~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 361 ---------ESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSF 427 (768)
T ss_dssp ---------TTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCS
T ss_pred ---------HHHHHHHCCCCEEECCCCCCCCCCCHHHHH--CCCCCCCEEECCCCC-CCCCCC-HHHHCCCCCCEEECCC
T ss_conf ---------989863227719986278747876766653--324776189897784-654248-7775689879898958
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHCC
Q ss_conf 47730000244576554410158647001257875342258854346877556898168851141455556887500001
Q 000354 976 CTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQ 1055 (1622)
Q Consensus 976 C~~L~~i~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~~~~~~sL~~L~I~~C~~L~~l~~~~~~~~~l~~~~~ 1055 (1622)
|.--..++. ....+++|+.|.+++|.....++.... .+++|+.|++.+|.-...++.
T Consensus 428 N~l~~~~p~--------~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~------------- 484 (768)
T 3rgz_A 428 NYLSGTIPS--------SLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPS------------- 484 (768)
T ss_dssp SEEESCCCG--------GGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCG-------------
T ss_pred CCCCCCCCH--------HHHCCCCCCEEECCCCCCCCCCCHHHC--CCCCCEEEEECCCCCCCCCCH-------------
T ss_conf 846685467--------774499889898978815471897882--877732999019951375887-------------
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCEE
Q ss_conf 47654431022333056730277327664221236787544566519997407999861878831276536999835126
Q 000354 1056 RNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYK 1135 (1622)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~L~I~c~~l~ 1135 (1622)
....+++|+.|+++++.+....+..+ ..+++|+.|++++|.+.......+..+++|+.|+++.+.+.
T Consensus 485 -----------~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 485 -----------GLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp -----------GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred -----------HHHCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf -----------88169989989753995189687688--56899998989789433748877708898998989888468
Q ss_pred -EEECCCHHHHCCCCCCCCCEEECCCCCCCCHHHCCC------------------CCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf -970150132111433431503314554650312158------------------6453001445413762267865458
Q 000354 1136 -QIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQG------------------FKLDSVVENLEMLEVWWCDNLVNLV 1196 (1622)
Q Consensus 1136 -~i~~~~~~~~~~~~l~sL~~L~i~~c~~L~~i~~~~------------------~~~~~~l~~L~~L~i~~C~~L~~l~ 1196 (1622)
.++. . ......+..+.+.....+..+.... +.....+..+..+.+.....-...|
T Consensus 552 g~ip~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 552 GTIPA-A-----MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp SBCCG-G-----GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCCH-H-----HHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 82795-7-----86042122320134542111134443222233222100135563232002321100113310046274
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89876678449998346787543544566200245688891455521002366654445322243251012213223411
Q 000354 1197 PSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSF 1276 (1622)
Q Consensus 1197 ~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~L~~c~~L~~l 1276 (1622)
.....+++|+.|+++++ ++....+ .....++.|+.|+++++..-..++.. ...+++|+.|+++++.--..+
T Consensus 626 ~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~-------l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDE-------VGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGG-------GGGCTTCCEEECCSSCCEECC
T ss_pred HHHHCCCCCCEEECCCC-CCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHH-------HHCCCCCCEEECCCCCCCCCC
T ss_conf 33403356657978588-0155587-78841415787848688038878967-------847778998989788023868
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 48974112798555785257644245788
Q 000354 1277 YSGNYTFKFPCLEDLFVIECPNMKIFSTR 1305 (1622)
Q Consensus 1277 ~~~~~~~~~~sL~~L~I~~Cp~l~slp~~ 1305 (1622)
|... ..+++|+.|++.+++---..|.+
T Consensus 697 p~~l--~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 697 PQAM--SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGG--GGCCCCSEEECCSSEEEEECCSS
T ss_pred CHHH--HCCCCCCEEECCCCCCCCCCCCC
T ss_conf 8677--57887897879688155608996
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=302.52 Aligned_cols=306 Identities=23% Similarity=0.286 Sum_probs=228.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEEECCCCCHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCCHHHHHHH-
Q ss_conf 875441017999999999973--999199999907986099999999999611-6776-61999992699699999999-
Q 000354 136 EGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPDLKRIRRE- 210 (1622)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~- 210 (1622)
.....|+||+.++++|.++|. .+..++|+|+||||+||||||.+++++.++ +.+| +.++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHHH
T ss_conf 9987140529999999999860368884699976998988999999983556888528996599977877-668899999
Q ss_pred --HHHHHCCC-----CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf --99993798-----8899929999999999980-394799975778801020105888889998189998385012210
Q 000354 211 --IADQLGLN-----FCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1622)
Q Consensus 211 --i~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~~ 282 (1622)
++..++.. ............+...+.. .+++||||||+|+...+..+ ..|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHHH
T ss_conf 9999985035565567998899999999999706799869998589987999876-------379869998988177773
Q ss_pred CCCCCCEEEE---CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 1766513993---1699888999999871899999506999999999928982999999999607993369999999984
Q 000354 283 EMHCQNNYCV---SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1622)
Q Consensus 283 ~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~ 359 (1622)
+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||.++|+.++.+. ..|+.++..+..
T Consensus 273 -~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 273 -VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp -CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred -CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf -48-9826861588999899999999871898--310459999999995898379999999984484-359999999988
Q ss_pred HCCC------CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1048------8885788999999986148951479999760335778881188899872024533330109999999999
Q 000354 360 SARN------FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYA 433 (1622)
Q Consensus 360 ~~~~------~~~~~~i~~~~l~~sy~~L~~~~lk~~fl~~alfp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~ 433 (1622)
.... ......+. .++..||+.|+++ .|.||++||+||++++++...+...|.+.. ..+..
T Consensus 348 ~~~~~~~~~~~~~~~~l~-~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~ 413 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVED 413 (591)
T ss_dssp CCCCCSSCCCSSCCHHHH-HHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred HHHHHHHHCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCH------------HHHHH
T ss_conf 689876511465437899-9999999868999-999999745567998508999999966588------------99999
Q ss_pred HHHHHHHCCCCCCCC--CCCEEEECHHHHHHHHHHHH
Q ss_conf 999774115556799--97809932358999999875
Q 000354 434 LVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIAS 468 (1622)
Q Consensus 434 ~l~~L~~~~Li~~~~--~~~~~~mHdlir~~a~~~~~ 468 (1622)
++++|++++|++... ....|+||+++|+|++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 9999985958688548985679976899999986535
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=301.83 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=132.7
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 289910468899899888997319982599999888902235999700999638767446-8458999988699822778
Q 000354 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQCI 569 (1622)
Q Consensus 491 r~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~L-P~~i~~L~~Lr~L~Ls~~~ 569 (1622)
+.+...+..+..+|..+. ++++.|++.+|.. ..++...|.++++|++|+++++.+..+ |..+..+.+|++|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCCCCCC-CCCCEEECCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 744877798052641248-8876888989977-87597887178767588788996485697787406676888899985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 8996--33379999899980179985355-33206899999983389898854911038999897999107755432244
Q 000354 570 LGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1622)
Q Consensus 570 l~~l--~~i~~L~~L~~LdLs~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~ 646 (1622)
+..+ ..|+.+.+|++|+++++.+..+| ..++++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC-----
T ss_conf 675685453038888989898996685396674156788889898995-24667211124556777974588436-----
Q ss_pred CCCCCCCCCHHHHC--CCCCCCEEEEEECCCCCCCC
Q ss_conf 43113565836208--99998899975249977894
Q 000354 647 LNLERNNASLQELS--ILSHLTTLEIHIRDAVILPK 680 (1622)
Q Consensus 647 ~~~~~~~~~~~~L~--~L~~L~~L~i~~~~~~~~~~ 680 (1622)
......+. .+++|+.|++..+....++.
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------CCCHHHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf ------529788624466632179888982565581
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=293.34 Aligned_cols=174 Identities=23% Similarity=0.256 Sum_probs=112.4
Q ss_pred CCCCCCEEEECCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCE
Q ss_conf 134542899104688998998-8-899731998259999988890223599970099963876744684-5899998869
Q 000354 486 MLKNCIAIFLHDINTGELPEG-L-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLES 562 (1622)
Q Consensus 486 ~~~~~r~Lsl~~~~~~~lp~~-~-~~~~Lr~L~L~~n~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~LP~-~i~~L~~Lr~ 562 (1622)
...+++++.+.++.+..++.. + .+++|++|++.+|.... ++...|.+++.|++|++++|.+..+|. .|..+.+|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 48887688898997787597887178767588788996485-69778740667688889998567568545303888898
Q ss_pred EECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEECCC
Q ss_conf 98227788996--3337999989998017998535-533206899999983389898854911038--999897999107
Q 000354 563 LCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVIS--SLSQLEELYLGN 637 (1622)
Q Consensus 563 L~Ls~~~l~~l--~~i~~L~~L~~LdLs~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~ip~~~i~--~L~~L~~L~l~~ 637 (1622)
|++++|.+..+ ..|+++.+|++|++++|.+... |..++++++|++|++++|. +..++...+. .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCCCEEECCC
T ss_conf 9898996685396674156788889898995246672111245567779745884-365297886244666321798889
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
Q ss_conf 75543224443113565836208999988999752
Q 000354 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHI 672 (1622)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~ 672 (1622)
|.+. ......+..+.+|+.|.+..
T Consensus 181 n~l~-----------~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 181 NQIK-----------EFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp CCCC-----------CBCTTGGGGSSEECEEECTT
T ss_pred CCCC-----------CCCHHHHHHHHHHHHHHCCC
T ss_conf 8256-----------55815553223445543056
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=285.29 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=117.7
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 289910468899899888997319982599999888902235999700999638767446-8458999988699822778
Q 000354 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQCI 569 (1622)
Q Consensus 491 r~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~L-P~~i~~L~~Lr~L~Ls~~~ 569 (1622)
+.+...+..+..+|..+. ++++.|++++|.. ..++...|.++++|++|++++|.+..+ |..|..+.+|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCEECCCCCCCCCCCCCC-CCCCEEECCCCCC-CEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 705746888451898888-8767887888975-77375455577667488688773664397773060106886787985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8996--33379999899980179985355-332068999999833898988--549110389998979991077554322
Q 000354 570 LGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLK--VIPPNVISSLSQLEELYLGNTSVEWEF 644 (1622)
Q Consensus 570 l~~l--~~i~~L~~L~~LdLs~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~--~ip~~~i~~L~~L~~L~l~~~~~~~~~ 644 (1622)
+..+ ..|+++.+|++|++++|.+..+| ..++++.+|++|++++|. +. .+|.. ++++++|++|++++|.+....
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCEECC
T ss_conf 630485220786537888703775554451134898877989687885-232530686-732677778876688531057
Q ss_pred CCCCCCCCCCCHHHHCCCCC-CCEEEEEECCCCCC
Q ss_conf 44431135658362089999-88999752499778
Q 000354 645 EGLNLERNNASLQELSILSH-LTTLEIHIRDAVIL 678 (1622)
Q Consensus 645 ~~~~~~~~~~~~~~L~~L~~-L~~L~i~~~~~~~~ 678 (1622)
...+..+..++. +..|++..+....+
T Consensus 170 --------~~~~~~l~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 170 --------VNDLQFLRENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp --------TTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred --------HHHHHHHHCCCCCCCEEECCCCCCCEE
T ss_conf --------334121203420024300468975325
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=282.30 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=134.7
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 4289910468899899888997319982599999888902235999700999638767446-845899998869982277
Q 000354 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1622)
Q Consensus 490 ~r~Lsl~~~~~~~lp~~~~~~~Lr~L~L~~n~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~L-P~~i~~L~~Lr~L~Ls~~ 568 (1622)
.+.+...+..+..+|..+ ..+++.|++.+|... .++...|.++++|++|++++|.+..+ |..|..+.+|++|+|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 723777779806286778-986758981587347-179667256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88996--3337999989998017998535-53320689999998338989885491103899989799910775543224
Q 000354 569 ILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1622)
Q Consensus 569 ~l~~l--~~i~~L~~L~~LdLs~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~ 645 (1622)
.+..+ ..++.+.+|++|+++++.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC----
T ss_conf 5654586552344215376521267665781012237822389887983-41147654568765687776568445----
Q ss_pred CCCCCCCCCCHHHHCCCCCCC--EEEEEECCCCCCC
Q ss_conf 443113565836208999988--9997524997789
Q 000354 646 GLNLERNNASLQELSILSHLT--TLEIHIRDAVILP 679 (1622)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~--~L~i~~~~~~~~~ 679 (1622)
......++.+++|+ .|++..+....++
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred -------CCCHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf -------54965633221564038966798147548
Done!