BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000357
(1619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 216 bits (550), Expect = 9e-56, Method: Composition-based stats.
Identities = 100/183 (54%), Positives = 135/183 (73%), Gaps = 2/183 (1%)
Query: 464 LQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLK 523
+++GI LFN+KP +GI++L +G +PE++A FL L+ T +G++LG+ ++F+ +
Sbjct: 22 IEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKE 81
Query: 524 VMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSS--FTSA 581
VM+AYVD +F G DF A+R FL GFRLPGEAQKIDR+MEKFA RY +CN F SA
Sbjct: 82 VMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASA 141
Query: 582 DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 641
DTAYVLAYS+IML TD H+ VK+KMTK +I+ NRGI+D KDLPEEYL +Y++I +
Sbjct: 142 DTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
Query: 642 IKM 644
I M
Sbjct: 202 ISM 204
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 133/199 (66%), Gaps = 4/199 (2%)
Query: 451 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMI 510
+ TL++ R ++ G FN P KGI+FL+ ++ + ++PEE+A FL GLN+T I
Sbjct: 7 SKTLQRNR----KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAI 62
Query: 511 GDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 570
GDYLGEREE +L V+HA+VD F ++ A+R FL FRLPGEAQKIDR+ME FA+RY
Sbjct: 63 GDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRY 122
Query: 571 CKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYL 630
C CNP F S DT YVL+YSVIMLNTD HN V+DKM F+ NRGI++G DLPEE L
Sbjct: 123 CLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELL 182
Query: 631 GVLYDQIVKNEIKMNADSS 649
LYD I K+ D
Sbjct: 183 RNLYDSIRNEPFKIPEDDG 201
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/199 (52%), Positives = 133/199 (66%), Gaps = 4/199 (2%)
Query: 451 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMI 510
+ TL++ R ++ G FN P KGI+FL+ ++ + ++PEE+A FL GLN+T I
Sbjct: 7 SKTLQRNR----KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAI 62
Query: 511 GDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 570
GDYLGEREE +L V+HA+VD F ++ A+R FL FRLPG+AQKIDR+ME FA+RY
Sbjct: 63 GDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRY 122
Query: 571 CKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYL 630
C CNP F S DT YVL+YSVIMLNTD HN V+DKM F+ NRGI++G DLPEE L
Sbjct: 123 CLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELL 182
Query: 631 GVLYDQIVKNEIKMNADSS 649
LYD I K+ D
Sbjct: 183 RNLYDSIRNEPFKIPEDDG 201
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/199 (52%), Positives = 132/199 (66%), Gaps = 4/199 (2%)
Query: 451 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMI 510
+ TL++ R ++ G FN P KGI+FL+ ++ + ++PEE+A FL GLN+T I
Sbjct: 7 SKTLQRNR----KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAI 62
Query: 511 GDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 570
GDYLGEREE +L V+HA+VD F ++ A+R FL FRLPGEAQKIDR+ME FA+RY
Sbjct: 63 GDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRY 122
Query: 571 CKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYL 630
C NP F S DT YVL+YSVIMLNTD HN V+DKM F+ NRGI++G DLPEE L
Sbjct: 123 CLXNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELL 182
Query: 631 GVLYDQIVKNEIKMNADSS 649
LYD I K+ D
Sbjct: 183 RNLYDSIRNEPFKIPEDDG 201
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 130/194 (67%), Gaps = 4/194 (2%)
Query: 451 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMI 510
+ TL++ R ++ G FN P KGI+FL+ ++ + ++PEE+A FL GLN+T I
Sbjct: 5 SKTLQRNR----KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAI 60
Query: 511 GDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 570
GDYLGEREE +L V+HA+VD F ++ A+R FL FRLPGEAQKIDR+ME FA+RY
Sbjct: 61 GDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRY 120
Query: 571 CKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYL 630
C CNP F S DT YVL+++VIMLNT HN V+DK F+ NRGI++G DLPEE L
Sbjct: 121 CLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELL 180
Query: 631 GVLYDQIVKNEIKM 644
LYD I K+
Sbjct: 181 RNLYDSIRNEPFKI 194
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 128/192 (66%), Gaps = 3/192 (1%)
Query: 456 QRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLG 515
QR A ++ G FN P KGI+FLI + + SPE+VA FL GLN+T+IGDYLG
Sbjct: 13 QRNA---QIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLG 69
Query: 516 EREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP 575
ER++F++KV+ A+V+ F ++ A+R FL FRLPGEAQKIDR+ME FA RYC CNP
Sbjct: 70 ERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNP 129
Query: 576 SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYD 635
F S DT YVL++++IMLNT HN V+DK T FI NRGI++G DLPEE L LY+
Sbjct: 130 GVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYE 189
Query: 636 QIVKNEIKMNAD 647
I K+ D
Sbjct: 190 SIKNEPFKIPED 201
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 124/175 (70%), Gaps = 1/175 (0%)
Query: 467 GISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMH 526
G FN P KGI+FLI + + ++ E++A FL GLN+T IGDYLGER+EF+++V+H
Sbjct: 13 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 72
Query: 527 AYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYV 586
A+V+ F ++ A+R FL FRLPGEAQKIDR+ME FA+RYC+CN F S DT YV
Sbjct: 73 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 132
Query: 587 LAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 641
L++++IMLNT HN VKDK T FI NRGI+DG DLPEE L LY+ I KNE
Sbjct: 133 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESI-KNE 186
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 124/175 (70%), Gaps = 1/175 (0%)
Query: 467 GISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMH 526
G FN P KGI+FLI + + ++ E++A FL GLN+T IGDYLGER+EF+++V+H
Sbjct: 13 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 72
Query: 527 AYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYV 586
A+V+ F ++ A+R FL FRLPGEAQKIDR+ME FA+RYC+CN F S DT YV
Sbjct: 73 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 132
Query: 587 LAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 641
L++++IMLNT HN VKDK T FI NRGI+DG DLPEE L LY+ I KNE
Sbjct: 133 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESI-KNE 186
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 193 bits (491), Expect = 5e-49, Method: Composition-based stats.
Identities = 95/181 (52%), Positives = 125/181 (69%), Gaps = 2/181 (1%)
Query: 464 LQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLK 523
++ GI LFN+KP +GI+FL +G S E++A FL L+ T +GD+LG+ F+ +
Sbjct: 13 IEHGIELFNKKPKRGIQFLQEQGXLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKE 72
Query: 524 VMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSS--FTSA 581
V +AYVD +F +F A+R FL GFRLPGEAQKIDR+ EKFA RY +CN F SA
Sbjct: 73 VXYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASA 132
Query: 582 DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 641
DTAYVLAYS+I L TD H+ VK+K TK +I+ NRGI+D KDLPEEYL +Y++I +
Sbjct: 133 DTAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEIEGKK 192
Query: 642 I 642
I
Sbjct: 193 I 193
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 193 bits (490), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 3/192 (1%)
Query: 456 QRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLG 515
QR A ++ G FN P KGI+FLI + + SPE+VA FL GLN+T+IGDYLG
Sbjct: 13 QRNA---QIAXGRKKFNXDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLG 69
Query: 516 EREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP 575
ER++F++KV+ A+V+ F ++ A+R FL FRLPGEAQKIDR E FA RYC CNP
Sbjct: 70 ERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNP 129
Query: 576 SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYD 635
F S DT YVL++++I LNT HN V+DK T FI NRGI++G DLPEE L LY+
Sbjct: 130 GVFQSTDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYE 189
Query: 636 QIVKNEIKMNAD 647
I K+ D
Sbjct: 190 SIKNEPFKIPED 201
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 5/189 (2%)
Query: 468 ISLFNRKPSKGIEFLIN-SKKVGDSP-EEVASFL-KNTTGLNETMIGDYLGEREEFSLKV 524
I FN KP GI + ++ SP EE+A F + L+ +GDYL E + +V
Sbjct: 15 IEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV 74
Query: 525 MHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTA 584
+ A+ NF G F +R FL+ F+LPGEAQKIDR+++ F+ Y + NP ++AD A
Sbjct: 75 LKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAA 134
Query: 585 YVLAYSVIMLNTDAHNSMV--KDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEI 642
Y+LA+ IMLNTD HN + K+KMT RN RG ++G D ++L LY +I
Sbjct: 135 YLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPF 194
Query: 643 KMNADSSAP 651
++N ++P
Sbjct: 195 ELNFVKTSP 203
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 111/211 (52%), Gaps = 29/211 (13%)
Query: 461 KIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFL-KNTTGLNETMIGDYLGERE 518
K E + FN K KGI+ LI + DS ++ASFL N LN+ IG L + +
Sbjct: 9 KTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPK 68
Query: 519 EFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYC------- 571
+ SL + ++D F+FKG+ AIR L FRLPGE+Q+I+RI+E F+ +Y
Sbjct: 69 KTSL--LKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDK 126
Query: 572 ---------KCNPSSFT---------SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 613
K S T AD+ +VL+YS+IMLNTD+HN VKD MT D+
Sbjct: 127 VELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYS 186
Query: 614 RNNRGIDDGKDLPEEYLGVLYDQIVKNEIKM 644
N RG +GKD P YL +Y I EI M
Sbjct: 187 NNLRGCYNGKDFPRWYLHKIYTSIKVKEIVM 217
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 113/214 (52%), Gaps = 25/214 (11%)
Query: 461 KIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFL-KNTTGLNETMIGDYLGERE 518
K E + + FN KP KGI LI + DS +++A FL N +N+ IG L +
Sbjct: 24 KTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD 83
Query: 519 EFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCK---CNP 575
+ SL ++ Y+ F+F G+ AIR L FRLPGE+Q+I+RI+E F+ YC+ +P
Sbjct: 84 KVSL--LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDP 141
Query: 576 SSFTS------------ADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGK 623
S + AD+ ++L+YS+IMLNTD HN VK+ M+ D+ N +G + K
Sbjct: 142 SKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHK 201
Query: 624 DLPEEYLGVLYDQIVKNEIKMNADSSAPESKQAN 657
D P YL +Y I EI M PE N
Sbjct: 202 DFPFWYLDRVYCSIRDKEIVM------PEEHHGN 229
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 5/189 (2%)
Query: 468 ISLFNRKPSKGIEFLIN-SKKVGDSP-EEVASFL-KNTTGLNETMIGDYLGEREEFSLKV 524
I FN KP GI + ++ SP EE+A F + L+ +GDYL E + +V
Sbjct: 15 IEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV 74
Query: 525 MHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTA 584
+ A+ NF G F +R FL+ F+LPGEAQKIDR+++ F+ Y + NP ++AD A
Sbjct: 75 LKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAA 134
Query: 585 YVLAYSVIMLNTDAHNSMV--KDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEI 642
Y+LA+ I LNTD HN + K+K T RN RG ++G D ++L LY +I
Sbjct: 135 YLLAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPF 194
Query: 643 KMNADSSAP 651
++N ++P
Sbjct: 195 ELNFVKTSP 203
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 1029 PFVIIMQKSGSAEIRELIIRCISQMVLSRVS--NVKSGWKS---VFSIFTAAAADERKNI 1083
P +I K ++ L IS+ VL+R+S N K W + +S A A NI
Sbjct: 284 PDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANI 343
Query: 1084 VLLAFETMEKIVRE---YF----------PHITETESTTFTDCVKCLLTFTNS 1123
L+ E + RE YF P + ET S CV+CLL T +
Sbjct: 344 ELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRA 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,984,759
Number of Sequences: 62578
Number of extensions: 1625027
Number of successful extensions: 3701
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3679
Number of HSP's gapped (non-prelim): 16
length of query: 1619
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1507
effective length of database: 7,964,601
effective search space: 12002653707
effective search space used: 12002653707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)