Query 000357
Match_columns 1619
No_of_seqs 436 out of 1118
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 1E-301 3E-306 2960.8 142.8 1543 2-1619 208-1778(1780)
2 KOG0929 Guanine nucleotide exc 100.0 2E-243 4E-248 2303.7 90.6 1348 1-1613 164-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 3E-116 6E-121 1104.4 86.5 997 199-1327 294-1326(1386)
4 COG5307 SEC7 domain proteins [ 100.0 8.5E-92 1.8E-96 900.4 35.0 991 200-1350 1-1023(1024)
5 KOG0930 Guanine nucleotide exc 100.0 1.1E-50 2.3E-55 438.2 14.4 191 459-649 60-250 (395)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 8.9E-50 1.9E-54 435.5 20.6 183 460-642 1-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 2.3E-49 4.9E-54 435.3 19.9 185 458-642 2-190 (190)
8 KOG1846 Uncharacterized conser 100.0 1.4E-45 3.1E-50 438.8 53.4 947 519-1527 362-1595(1777)
9 smart00222 Sec7 Sec7 domain. D 100.0 5E-49 1.1E-53 431.0 20.7 183 460-642 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 1.3E-49 2.7E-54 452.5 12.6 194 461-654 198-397 (627)
11 KOG1848 Uncharacterized conser 100.0 2.9E-42 6.3E-47 432.7 49.0 538 714-1328 523-1133(1610)
12 PF12783 Sec7_N: Guanine nucle 100.0 1.1E-33 2.4E-38 306.1 17.9 162 190-352 2-168 (168)
13 KOG0932 Guanine nucleotide exc 99.9 9.8E-28 2.1E-32 279.9 12.9 153 492-644 307-459 (774)
14 PF09324 DUF1981: Domain of un 99.9 1.4E-22 3.1E-27 194.4 6.1 86 1009-1094 1-86 (86)
15 KOG2023 Nuclear transport rece 96.5 4.6 0.0001 51.7 33.7 432 932-1494 128-614 (885)
16 PLN03076 ARF guanine nucleotid 96.1 1.4 3E-05 63.5 28.5 148 1180-1352 1130-1281(1780)
17 KOG2171 Karyopherin (importin) 91.3 25 0.00055 48.1 23.7 139 1184-1349 115-256 (1075)
18 PF01602 Adaptin_N: Adaptin N 90.9 34 0.00074 44.0 24.5 293 928-1329 188-485 (526)
19 PF01602 Adaptin_N: Adaptin N 90.8 60 0.0013 41.7 32.7 126 952-1094 54-179 (526)
20 KOG2171 Karyopherin (importin) 90.7 86 0.0019 43.4 42.8 211 915-1143 61-279 (1075)
21 KOG1824 TATA-binding protein-i 90.5 81 0.0018 42.7 28.8 129 1192-1352 574-705 (1233)
22 KOG1848 Uncharacterized conser 90.1 1E+02 0.0023 43.4 32.6 171 188-363 208-419 (1610)
23 PF03378 CAS_CSE1: CAS/CSE pro 83.8 1.4E+02 0.003 38.1 25.2 276 976-1315 67-356 (435)
24 PF14500 MMS19_N: Dos2-interac 83.3 55 0.0012 38.7 18.0 159 1039-1239 95-260 (262)
25 PF12348 CLASP_N: CLASP N term 81.0 84 0.0018 35.7 18.2 178 953-1144 25-208 (228)
26 PF11864 DUF3384: Domain of un 78.6 32 0.00069 44.1 15.0 141 922-1075 207-352 (464)
27 PF12717 Cnd1: non-SMC mitotic 76.0 25 0.00054 38.8 11.5 112 993-1119 1-112 (178)
28 PF12348 CLASP_N: CLASP N term 71.9 54 0.0012 37.3 13.3 105 221-331 20-124 (228)
29 KOG1248 Uncharacterized conser 71.0 4.5E+02 0.0097 37.1 34.7 241 1026-1331 97-345 (1176)
30 KOG0929 Guanine nucleotide exc 69.9 86 0.0019 44.9 16.3 237 968-1241 1063-1322(1514)
31 PF12719 Cnd3: Nuclear condens 69.7 22 0.00048 42.6 9.9 65 1200-1287 77-144 (298)
32 PF12783 Sec7_N: Guanine nucle 69.5 61 0.0013 35.4 12.5 120 930-1054 8-145 (168)
33 PF11640 TAN: Telomere-length 66.8 35 0.00077 36.9 9.8 136 1194-1339 11-154 (155)
34 cd00020 ARM Armadillo/beta-cat 60.9 28 0.00061 34.5 7.3 106 985-1094 12-118 (120)
35 KOG2956 CLIP-associating prote 59.1 3.7E+02 0.008 34.2 17.2 160 1021-1224 326-486 (516)
36 KOG1241 Karyopherin (importin) 58.7 3.6E+02 0.0078 36.2 17.7 175 1081-1321 104-282 (859)
37 PF08767 CRM1_C: CRM1 C termin 57.9 2E+02 0.0043 35.0 15.1 124 1186-1331 70-198 (319)
38 PF10508 Proteasom_PSMB: Prote 55.2 5.9E+02 0.013 33.1 19.8 66 985-1055 124-189 (503)
39 PF08427 DUF1741: Domain of un 55.0 2.6E+02 0.0055 32.8 14.4 148 1180-1342 58-222 (237)
40 PF02985 HEAT: HEAT repeat; I 53.7 21 0.00046 27.7 3.9 28 1189-1216 2-29 (31)
41 PF08767 CRM1_C: CRM1 C termin 52.0 2.5E+02 0.0054 34.3 14.6 122 1023-1146 65-198 (319)
42 PF04510 DUF577: Family of unk 51.6 1.2E+02 0.0026 33.6 10.3 152 1112-1328 7-165 (174)
43 cd00020 ARM Armadillo/beta-cat 51.3 64 0.0014 31.9 8.1 110 1189-1326 9-119 (120)
44 PF12755 Vac14_Fab1_bd: Vacuol 50.7 1E+02 0.0022 30.9 9.1 74 1022-1097 24-97 (97)
45 PTZ00429 beta-adaptin; Provisi 49.9 8.6E+02 0.019 33.4 21.9 239 981-1306 257-527 (746)
46 PF10508 Proteasom_PSMB: Prote 49.2 7.2E+02 0.016 32.3 22.6 264 993-1326 51-318 (503)
47 PF12717 Cnd1: non-SMC mitotic 47.4 99 0.0021 34.2 9.4 93 1200-1328 1-93 (178)
48 KOG2023 Nuclear transport rece 47.1 1.3E+02 0.0029 39.4 11.2 156 972-1139 124-282 (885)
49 KOG2956 CLIP-associating prote 45.2 2.3E+02 0.005 35.9 12.6 113 1188-1327 288-400 (516)
50 PF11864 DUF3384: Domain of un 45.1 7.9E+02 0.017 31.6 24.0 206 1081-1354 148-358 (464)
51 KOG1824 TATA-binding protein-i 44.3 1.1E+03 0.023 32.9 23.9 79 994-1074 534-618 (1233)
52 PF12719 Cnd3: Nuclear condens 40.8 3.2E+02 0.0069 32.8 13.1 105 979-1092 26-139 (298)
53 KOG1766 Enhancer of rudimentar 35.5 61 0.0013 32.0 4.6 44 1262-1305 12-63 (104)
54 PRK09687 putative lyase; Provi 34.9 5.2E+02 0.011 30.9 13.4 93 986-1091 60-152 (280)
55 PF09324 DUF1981: Domain of un 34.7 1.6E+02 0.0035 28.8 7.5 54 1271-1324 32-85 (86)
56 KOG0166 Karyopherin (importin) 33.9 4.8E+02 0.01 33.9 13.3 213 984-1245 156-375 (514)
57 PLN03205 ATR interacting prote 33.2 3.4E+02 0.0074 33.7 11.1 122 923-1051 317-442 (652)
58 cd03565 VHS_Tom1 VHS domain fa 31.0 4.7E+02 0.01 28.0 11.0 92 227-329 21-114 (141)
59 cd03568 VHS_STAM VHS domain fa 30.9 2.5E+02 0.0054 30.2 8.9 80 990-1092 47-129 (144)
60 KOG1967 DNA repair/transcripti 29.4 5.5E+02 0.012 35.3 13.0 162 1042-1240 143-308 (1030)
61 COG2718 Uncharacterized conser 27.8 75 0.0016 39.0 4.7 48 133-183 58-105 (423)
62 KOG1062 Vesicle coat complex A 25.4 1.5E+03 0.033 31.0 15.8 84 1030-1123 298-396 (866)
63 COG5240 SEC21 Vesicle coat com 25.2 6.4E+02 0.014 32.9 11.9 124 999-1141 394-535 (898)
64 PF13513 HEAT_EZ: HEAT-like re 24.2 83 0.0018 27.4 3.2 52 1274-1325 4-55 (55)
65 PF05004 IFRD: Interferon-rela 24.1 4.8E+02 0.01 31.7 10.7 81 1271-1351 57-140 (309)
66 cd03569 VHS_Hrs_Vps27p VHS dom 24.0 4.2E+02 0.009 28.5 9.1 80 990-1092 51-133 (142)
67 PF12755 Vac14_Fab1_bd: Vacuol 23.8 7.5E+02 0.016 24.8 10.9 94 1203-1326 2-95 (97)
68 PLN03205 ATR interacting prote 23.6 1.1E+03 0.025 29.4 13.2 150 1062-1232 366-542 (652)
69 cd03567 VHS_GGA VHS domain fam 22.7 7.8E+02 0.017 26.4 10.8 77 261-339 43-128 (139)
70 PF10521 DUF2454: Protein of u 22.6 9.3E+02 0.02 28.7 12.7 144 1181-1344 113-269 (282)
71 PF01133 ER: Enhancer of rudim 22.5 59 0.0013 32.8 2.2 44 1263-1306 13-64 (102)
72 KOG0168 Putative ubiquitin fus 22.0 2.2E+03 0.049 29.7 17.7 194 926-1144 124-325 (1051)
73 KOG4535 HEAT and armadillo rep 21.6 1.8E+03 0.039 28.5 17.7 58 1284-1341 281-338 (728)
74 PF13646 HEAT_2: HEAT repeats; 21.5 2.5E+02 0.0054 26.4 6.3 70 990-1084 10-79 (88)
75 KOG1060 Vesicle coat complex A 21.3 1.8E+03 0.04 30.2 15.2 163 991-1218 298-460 (968)
76 cd03568 VHS_STAM VHS domain fa 20.1 8.5E+02 0.018 26.2 10.5 62 265-329 46-109 (144)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.2e-301 Score=2960.82 Aligned_cols=1543 Identities=55% Similarity=0.893 Sum_probs=1315.7
Q ss_pred eEEEEecccCCcCCCCcccchHhhhcchhhhccCCCchHHHHHHHHHHHhhcCCCCCchhHHhhh---------------
Q 000357 2 VIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLK--------------- 66 (1619)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 66 (1619)
.+||+|||+|+.+++ ++|++++|++++.+++.++++++++||||+++++++.+++..|+.....
T Consensus 208 ~~VF~R~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1780)
T PLN03076 208 VIVFRRMEADSSTVP-IQPIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTAT 286 (1780)
T ss_pred HHHHHHhhccccccc-ccccccccccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccc
Confidence 579999999999999 9999999999999999999999999999999999999987666442210
Q ss_pred --hcccCCCCCCCCcccccccccchhcccccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCC
Q 000357 67 --QNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQA 144 (1619)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1619)
...|++++++++.++.++++|+++|+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 315 (1780)
T PLN03076 287 VETTNPADLLDSTDKDMLDAKYWEISMYK--------------------------------------------------- 315 (1780)
T ss_pred cCCCCcchhhccccccccccccccccccc---------------------------------------------------
Confidence 011112222223333333333332222
Q ss_pred CCCCccCCcccccccccCCcccccccccCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHhhccCCCCCCCCcchhhhhh
Q 000357 145 PKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRG 224 (1619)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Daflvfr~lckLs~k~~~~~~~~d~~~~rs 224 (1619)
...+++.++.++.+.+.++ +.++++.++++||||+|||+|||||||+.+.++..|++.+||
T Consensus 316 -----------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rs 376 (1780)
T PLN03076 316 -----------SALEGRKGELADGEVEKDD--------DLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRG 376 (1780)
T ss_pred -----------ccccccccccccccccccc--------hhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHH
Confidence 1112222222222211222 456778899999999999999999999999888889999999
Q ss_pred hHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000357 225 KILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVL 304 (1619)
Q Consensus 225 k~lsL~Ll~~iLe~~g~~f~~~~~~~~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~I~l 304 (1619)
|+||||||++||+++|++|++||.|+++||+|||++|+||++|++++||++||+|||+|+.+||.|||.||||||++||+
T Consensus 377 KllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l 456 (1780)
T PLN03076 377 KILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVL 456 (1780)
T ss_pred HHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHcCchhHHHHHHhcCCCCCCccHHHHHHHHHHHhccCCCCCCCCCCCchhhhHHHH
Q 000357 305 RVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRY 384 (1619)
Q Consensus 305 ~iLe~~~~~~~~qk~~vL~~l~~l~~dp~~lvelyvNYDCd~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~l~~ 384 (1619)
++||++++++++||+++|++|.+||+||++++|||+|||||.+++||||+||+.|+|+|++.|++.+++..|+||+.+|+
T Consensus 457 ~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~ 536 (1780)
T PLN03076 457 RVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKL 536 (1780)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHH
Confidence 99998777889999999999999999999999999999999999999999999999999998877777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-CCCCCCCC--C--CCCCCCCCCCccccccCCCCCCChHHHHHHHH
Q 000357 385 ESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET-DSSIDNNS--I--PNGEDGSVPDYEFHAEVNPEFSDAATLEQRRA 459 (1619)
Q Consensus 385 ~aL~cLv~il~sl~~w~~~~~~~~~~~~~~~~~~-~~s~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~ 459 (1619)
.||+||++||+||++|+++++..++.......+. ..+....+ . .++++ .....+..++.+...+++..+|++|+
T Consensus 537 ~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~ 615 (1780)
T PLN03076 537 EAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDE-NGEGSDSHSELSSETSDAATIEQRRA 615 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccccccchhhcccccccccccccccccc-ccccccccccccccCCcHHHHHHHHH
Confidence 9999999999999999988754433211111110 00000000 0 00000 01111112222334567889999999
Q ss_pred hHHHHHHHHHHhhcChhhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCCh
Q 000357 460 YKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDF 539 (1619)
Q Consensus 460 ~K~~l~~~~~~FN~~pkkgi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~ 539 (1619)
+|..+++|+.+||+|||+||+||+++|+++++|++||+||++++||||++||||||++++++++||++|++.|||+|++|
T Consensus 616 ~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~ 695 (1780)
T PLN03076 616 YKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEF 695 (1780)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhcCC
Q 000357 540 GHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGI 619 (1619)
Q Consensus 540 ~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~~f~~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~gi 619 (1619)
|+|||.||++||||||+|+||||||+||+|||+|||+.|.|+|++|+||||+||||||+|||++|+|||+++|++|+||+
T Consensus 696 d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgi 775 (1780)
T PLN03076 696 DEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGI 775 (1780)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhhhhhhhhhcccccccchhhhhhhhHHHHhhhhHHHHHHHHHHhhhc
Q 000357 620 DDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSK 699 (1619)
Q Consensus 620 ~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~~~~~~~~~~~~~~~~~d~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 699 (1619)
|+|+|+|+|||++||++|+++||+|++|+.++.+++..+.+.+.|+++++|.+.|++++++|+++++++++++++.++++
T Consensus 776 n~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~ 855 (1780)
T PLN03076 776 DDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEK 855 (1780)
T ss_pred CCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988766655555566677888888888898889999999999999999999877
Q ss_pred CCCCCCcceecCCccchhhhhHhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHhcc
Q 000357 700 SGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTY 779 (1619)
Q Consensus 700 ~~~~~~~f~~~~~~~~vr~Mfe~~W~piLaaLS~~l~~s~D~~~~~~~L~g~~~~i~Ia~~fgl~~~RDafV~sLakfT~ 779 (1619)
.+++.+.|+.++|.+|+|+||+++|+|++||||++|++++|++++..||+||+.||+|||.|||+++||+||++|||||+
T Consensus 856 ~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~ 935 (1780)
T PLN03076 856 ARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTS 935 (1780)
T ss_pred hccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcC
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHhcCCCCCCccccccccchhhh-hhcccCCCCC
Q 000357 780 LHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPS 858 (1619)
Q Consensus 780 L~~~~emk~KNv~aik~LL~IA~~~Gn~L~~SW~~IL~~is~le~lqLi~~g~~~d~~~~~~~~~~~~~-~~~~s~~~~s 858 (1619)
|+++.+|++||++|+++||+||+++||+|++||++||+|||+|||+|||+.|++||..+...|..+.+. +..++...|.
T Consensus 936 L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~ 1015 (1780)
T PLN03076 936 LHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPV 1015 (1780)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999987766555443332 2223334444
Q ss_pred ccccCCCCCCcchhhhcCCcccccccCCCCCCCCCHHHHHHHhhhhhhhhhhhcchhHHHHHhcccCCHHHHHHHHHHHH
Q 000357 859 LKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALC 938 (1619)
Q Consensus 859 ~~~~~~~q~~~~~~~~~~~S~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i~s~~id~IF~~S~~L~~eAiv~FV~ALc 938 (1619)
..++++.+.....+.++++++++...+...+..++++++.....+++++++|+++.+|+||++|++|+++||++||+|||
T Consensus 1016 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~ 1095 (1780)
T PLN03076 1016 LKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALC 1095 (1780)
T ss_pred cccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 43333322222223345677776665555566788889988777777788899999999999999999999999999999
Q ss_pred HhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhh
Q 000357 939 KVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELA 1018 (1619)
Q Consensus 939 ~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~ 1018 (1619)
+||++||++++.||+|+|+|||||++|||+|||++|++||+++++||+++|||+|..|++||+|+|||||||||+++||+
T Consensus 1096 ~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~ 1175 (1780)
T PLN03076 1096 KVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELA 1175 (1780)
T ss_pred HhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcc
Q 000357 1019 NYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREY 1098 (1619)
Q Consensus 1019 ~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~ 1098 (1619)
||+||++||+||++||.++.+.+|||+|++|+.|||++++++||||||+||+||+.|+.++++.+|+.||+++++|++||
T Consensus 1176 ~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1176 NYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred chhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCC-CCCC--CCCCCCcccCC
Q 000357 1099 FPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGS-SSPP--VNDNAPDLQSF 1175 (1619)
Q Consensus 1099 ~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~-~~~p--~~~~~~~~~~~ 1175 (1619)
|+.++.+..++|.|||+||.+|++++.++||||+||++||.|+++++++.+........... +..+ ......+...+
T Consensus 1256 f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1335 (1780)
T PLN03076 1256 FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEF 1335 (1780)
T ss_pred hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 99887555799999999999999999999999999999999999999875433211100000 0000 00111122223
Q ss_pred CCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCC
Q 000357 1176 SDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPD 1255 (1619)
Q Consensus 1176 ~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~ 1255 (1619)
.+.+.+..+|||||++|++++.|+|+|||++||+|||++|..||+.|++++|+.||++||||||+.++..++.....+++
T Consensus 1336 ~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~ 1415 (1780)
T PLN03076 1336 TDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPE 1415 (1780)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 45556778999999999999999999999999999999999999999999999999999999999998765543322111
Q ss_pred CC-CC-CCCCccccccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCC
Q 000357 1256 SP-TS-HSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 1333 (1619)
Q Consensus 1256 ~~-~~-~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f 1333 (1619)
.+ .. ...+.+.++|++|||++||+++++||++||+.++.+|+++|++|.+||||+|++|||||++||++||.+||.+|
T Consensus 1416 ~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F 1495 (1780)
T PLN03076 1416 GQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLF 1495 (1780)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccC
Confidence 11 00 11235789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHhhcccCccccCCCCCCccccccCCCCCCCCCCcchhhhhhhhhHHHhhhhhHHHH
Q 000357 1334 SQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQ 1413 (1619)
Q Consensus 1334 ~~~~W~~i~~~l~~~f~~T~p~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cvlQ 1413 (1619)
++++|++|+++|+++|+.|+|+|........ .|.......+.+....+....+..+....++....+.++|||||+|
T Consensus 1496 ~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~Q 1572 (1780)
T PLN03076 1496 SDEKWLEVVLSLKEAANATLPDFSYVVSGEY---MPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQ 1572 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHhCCchhhcccccc---cccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999764321110 1111001111111100001111111112223323455588889999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 000357 1414 LLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLR 1493 (1619)
Q Consensus 1414 LlLIq~v~el~~~~~~~l~~~~l~~Ll~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iLf 1493 (1619)
|||||+++|||+++|.+||++|+++|++||++||+|||+||+|++||++|||+|||+++++|||||||++|+++||+|||
T Consensus 1573 LllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~ 1652 (1780)
T PLN03076 1573 LLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQ 1652 (1780)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHhhhhccccccccCCchhhhHhhhhhhHHHHHHHHhhcCC
Q 000357 1494 DSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVSALRVLSGLE 1573 (1619)
Q Consensus 1494 ~m~~d~~~~~~~~~ie~~Lv~lc~~iL~~Y~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~Pvvv~iL~~l~~l~ 1573 (1619)
+||+|+++...+.++|++|+++|.+||++|+++++.+|++..+.+..++|.+|+|++++||++||+||||+||+||++||
T Consensus 1653 ~~~~d~~~~~~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~ 1732 (1780)
T PLN03076 1653 NLILDKPPLAKEAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLG 1732 (1780)
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCC
Confidence 99999998888999999999999999999999998555222223334699999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHhcCCCchhHHHHHHHHHHhhhhccccC
Q 000357 1574 RETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCIGPILLQ 1619 (1619)
Q Consensus 1574 ~~~F~~~~~~~ypll~~Li~~e~~~~e~r~al~~~f~~rvg~~~~~ 1619 (1619)
+++|++|+|.||||+|+|++||+.++|||.||+.+|++||||++++
T Consensus 1733 ~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~~~ 1778 (1780)
T PLN03076 1733 DSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVLLQ 1778 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhHhc
Confidence 9999999999999999999999889999999999998899999874
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-243 Score=2303.68 Aligned_cols=1348 Identities=47% Similarity=0.745 Sum_probs=1164.7
Q ss_pred CeEEEEecccCCcCCCCcccchHhhhcchhhhccCCCchHHHHHHHHHHHhhcCCCCCchhHHhhhhcccCCCCCCCCcc
Q 000357 1 MVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEV 80 (1619)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1619)
|+|||+|||+|+++++ | |.|++++.+.+ |+++++|+|+||++||+..+++++ ++. ...
T Consensus 164 l~~vf~~~e~~~~~~~--~-i~vs~~~~~~~----~~~s~~~~~~~i~~i~~~~~~~~~------------~~~---~~~ 221 (1514)
T KOG0929|consen 164 LNIVFRRMEEDSSDES--Q-ILVSELLRVSD----DPSSTEFVQQFIDSIMEVLVASPE------------DVG---LTE 221 (1514)
T ss_pred HHHHHHHhhhccCccc--c-cccccccccCC----CcchhHHHHHHHHHHHHhccCCcc------------ccc---ccc
Confidence 4689999999999999 6 99999999887 889999999999999999986611 111 112
Q ss_pred cccccccchhcccccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCccCCcccccccc
Q 000357 81 ATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDE 160 (1619)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1619)
+.++++|+..++++ ..+.
T Consensus 222 ~~~~~~~~~~~~~~--------------------------------------------------------------~~~~ 239 (1514)
T KOG0929|consen 222 MLDDNVNENSKTGD--------------------------------------------------------------SLSL 239 (1514)
T ss_pred ccccccccccccCc--------------------------------------------------------------cccc
Confidence 67777777777751 1112
Q ss_pred cCCcccccccccCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHhhccCCCCCCCCcchh-hhhhhHHHHHHHHHHHHcC
Q 000357 161 KGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLI-LLRGKILSLELLKVVTDNG 239 (1619)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Daflvfr~lckLs~k~~~~~~~~d~~-~~rsk~lsL~Ll~~iLe~~ 239 (1619)
+.++..+++.+.++ ....++.+.+++|||+|||+|||||||+.+.+ ..|.. .+|+|++|||||+.+|+++
T Consensus 240 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~-~~d~~s~~R~k~lsl~ll~~il~~~ 310 (1514)
T KOG0929|consen 240 RDAESPESESERDD--------DSERSSQNKLQRDAFLVFRALCKLSMKPLSSE-ESDTQSHMRSKLLSLELLKSILENS 310 (1514)
T ss_pred CcccccccccccCc--------chhhccccHHHHhHHHHHHHHHHhhCCCCCCC-CCChHHHHhhhHHHHHHHHHHHhcc
Confidence 22222222222222 23456779999999999999999999999886 44432 2999999999999999999
Q ss_pred CccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 000357 240 GPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKM 319 (1619)
Q Consensus 240 g~~f~~~~~~~~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~I~l~iLe~~~~~~~~qk~ 319 (1619)
|++|+++..|+++||||||++|+||++|++++||+++|.|||.|+.+||.|+|.||||||++|+++++|..++ +++||+
T Consensus 311 ~~vf~s~~~fi~aikqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~-s~~qk~ 389 (1514)
T KOG0929|consen 311 GSVFRSNEHFIDAIKQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTS-SFQQKM 389 (1514)
T ss_pred chhhcCchhhHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCC-cccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 899999
Q ss_pred HHHHHHHHHHcCchhHHHHHHhcCCCCCCccHHHHHHHHHHHhccCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 000357 320 TVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGT 399 (1619)
Q Consensus 320 ~vL~~l~~l~~dp~~lvelyvNYDCd~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~l~~~aL~cLv~il~sl~~ 399 (1619)
++|..+.++|.|||.+||+|+|||||.+.+||||++++.++|+|+++ +++....+|.||..+|..+++||+++++++..
T Consensus 390 ~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~-~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~ 468 (1514)
T KOG0929|consen 390 MVLRILTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGR-TGSNLELSPVQELALRLKSLKCLVSILKSMSG 468 (1514)
T ss_pred HHHHHHhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCC-CccccCCCCchhhhHhhhhhhhHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999994 45667788899999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChHHHHHHHHhHHHHHHHHHHhhcChhhhH
Q 000357 400 WMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGI 479 (1619)
Q Consensus 400 w~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~FN~~pkkgi 479 (1619)
|.++++..+....++..... +.. +..+ ++ ..+...+++++++..|.+|. +++|+.+||.+|++||
T Consensus 469 w~~~~~~~~~~~t~~~~~~~-~~~-----~~~~-----s~---~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi 533 (1514)
T KOG0929|consen 469 WNDNQLNVEGVITGKKSSTT-PIE-----NELN-----SD---TQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGI 533 (1514)
T ss_pred hccccccCCCcccCccccCc-chh-----hhcc-----Cc---cccccccChhhhhhhhhhcc-hHHHHHHhccCCccCc
Confidence 99875543322222111110 000 0000 00 11223467889999999988 9999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCChHHHHHHHhccCCCCCchHHH
Q 000357 480 EFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKI 559 (1619)
Q Consensus 480 ~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~ALR~fl~~frLPgEaQ~I 559 (1619)
+||+++|+++.+|.+||+||..+.+|||+++|+|||+++++|++|||+||+.|||++++|++|||.||++||||||+|||
T Consensus 534 ~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkI 613 (1514)
T KOG0929|consen 534 SFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKI 613 (1514)
T ss_pred hhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC-CCCCccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 000357 560 DRIMEKFAERYCKCNPS-SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIV 638 (1619)
Q Consensus 560 dri~e~Fa~~y~~~np~-~f~~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~ 638 (1619)
||+|++||+|||+|||+ .|.|||+||+||||+||||||+|||++|+|||++|||+||||||+|+|+|++||+.+||+|.
T Consensus 614 DRiM~kFS~ry~~cNP~~lFssADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~ 693 (1514)
T KOG0929|consen 614 DRLMEKFSERYCKCNPGTLFSSADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIE 693 (1514)
T ss_pred HHHHHHHHHHHHhcCCCccCCCccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCchhhhhhhhhhcccccccchhhhhhhhHHHHhhhhHHHHHHHHHHhhhcCCCCCCcceecCCccchhh
Q 000357 639 KNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRF 718 (1619)
Q Consensus 639 ~~ei~l~~~~~~~~~~~~~~~~~~~~~d~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~ 718 (1619)
.+||+|.++...+...+.+...+.++.++..|...+++.+..++..+ +..++.++..+.+.||.++|.+|||+
T Consensus 694 ~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ath~~~Vr~ 766 (1514)
T KOG0929|consen 694 YKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYSATHLISVRP 766 (1514)
T ss_pred hccccccccccccccCCCCcchhhhccccccccchhhhhhHHHhhhh-------HHHHHHhcccccccceecccceeeec
Confidence 99999999888766666666677788888777666665444333322 33444455555789999999999999
Q ss_pred hhHhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHhcccCCccccchhhHHHHHHHH
Q 000357 719 MVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAII 798 (1619)
Q Consensus 719 Mfe~~W~piLaaLS~~l~~s~D~~~~~~~L~g~~~~i~Ia~~fgl~~~RDafV~sLakfT~L~~~~emk~KNv~aik~LL 798 (1619)
||+.+|+|++|||+..|+.++|..++..||+|++.++||+|.|+|+..||||+++|++||.|+.+.+|+.||++++++++
T Consensus 767 m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~ 846 (1514)
T KOG0929|consen 767 MFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALL 846 (1514)
T ss_pred cccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCchhhhhHHHHHHHHHHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCc
Q 000357 799 SIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGS 878 (1619)
Q Consensus 799 ~IA~~~Gn~L~~SW~~IL~~is~le~lqLi~~g~~~d~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~q~~~~~~~~~~~S 878 (1619)
.||.++||++.++|.+|+.|++|+|++|+|+.|++++..... .... .. ... .+|+
T Consensus 847 ~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~----~s~~-------------~~-~~~-------~~~~ 901 (1514)
T KOG0929|consen 847 EIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFV----VSQR-------------ED-YKK-------PGGS 901 (1514)
T ss_pred HHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcch----hhhc-------------hh-ccC-------Cccc
Confidence 999999999999999999999999999999999987542111 1100 00 000 0233
Q ss_pred ccccccCCCCCCCCCHHHHHHHhhhhhhhhhhhcchhHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHH
Q 000357 879 YDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTK 958 (1619)
Q Consensus 879 ~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i~s~~id~IF~~S~~L~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqK 958 (1619)
|+....++.........++... .++|+||++|.+|+++||++||+|||+||++||.++++||+|+|||
T Consensus 902 ~~~~~~~s~~e~~~~~~s~s~v------------i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~~PrlfslqK 969 (1514)
T KOG0929|consen 902 YDSSGDGSRIENVGEKSSVSVV------------IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPSTPRLFSLQK 969 (1514)
T ss_pred ccccccccchhccccchhHHHH------------HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCCCCCCeeeccc
Confidence 4333322211111222222221 2499999999999999999999999999999999989999999999
Q ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccC
Q 000357 959 LVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG 1038 (1619)
Q Consensus 959 LvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~ 1038 (1619)
+|||++|||.|||++|++||.++++||+.|||++|..|+.||+|+||||+|||++++||++|+||++||+||+++|.++.
T Consensus 970 ~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~ 1049 (1514)
T KOG0929|consen 970 LVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSS 1049 (1514)
T ss_pred ceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHH
Q 000357 1039 SAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL 1118 (1619)
Q Consensus 1039 ~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~ 1118 (1619)
+++|||+|+||+. +|++||||+||+|++.||.+.+++||..+|+++..|+++||..+.+++.++|.||+.||.
T Consensus 1050 s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~ 1122 (1514)
T KOG0929|consen 1050 SAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLE 1122 (1514)
T ss_pred cchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHH
Confidence 9999999999998 899999999999999999999999999999999999999999888666699999999999
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccC
Q 000357 1119 TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD 1198 (1619)
Q Consensus 1119 ~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d 1198 (1619)
+|+++....++|++||+++|.|+.+++++ .+.+.. + ++ ...+.+.|...|+|+|++|++++.|
T Consensus 1123 ~F~~~~~~~~~s~~aI~~lr~ca~k~~e~--~~~~~~----------~----~~-~~~~~~~~~~~wfP~l~~ls~i~~~ 1185 (1514)
T KOG0929|consen 1123 EFTKNLGFPDDSLNAIRFLRLCALKLAEG--VYNEKL----------K----VG-KDSEFDVWNSGWFPMLFQLSKIIND 1185 (1514)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhccc--cchhhc----------c----cc-cccccccceeeeehhHhhhhHHhhc
Confidence 99999999999999999999999999876 111110 0 00 0115567899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHH
Q 000357 1199 SRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGA 1278 (1619)
Q Consensus 1199 ~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL 1278 (1619)
+|++||++|+++||+|+..||+.|..+||+.+|+ +|||||+.++...+.. +..+|++|||++||
T Consensus 1186 ~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~---------------~~~eW~~tT~~~Al 1249 (1514)
T KOG0929|consen 1186 YRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES---------------EKDEWLSTTCNHAL 1249 (1514)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh---------------hhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999998755432 33449999999999
Q ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcchhhHH
Q 000357 1279 ECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVK 1358 (1619)
Q Consensus 1279 ~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~i~~~l~~~f~~T~p~~~~ 1358 (1619)
+.+|+||++||+.++.+|+.++.+|.+||+|+|+++|++|++||++|+.+||.+|++++|+++++++.++|++|+|+++.
T Consensus 1250 ~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~ 1329 (1514)
T KOG0929|consen 1250 QALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELL 1329 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCccccCCCCCCccccccCCCCCCCCCCcchhhhhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 000357 1359 VLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKI 1438 (1619)
Q Consensus 1359 ~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cvlQLlLIq~v~el~~~~~~~l~~~~l~~ 1438 (1619)
.|+.++++. . ++ ++..+...+...+.....|.+ .++| +++.+||++|+++
T Consensus 1330 ~~~~~~~~~---~-----------~~----~e~~~~~~~~v~~~~~~~k~~-----------~~~~-~~~~~l~~~~~~~ 1379 (1514)
T KOG0929|consen 1330 TWRTMSDIS---S-----------EQ----NELSQTISNIVFYPATESKED-----------TDLL-GMYTSLSAQHLLK 1379 (1514)
T ss_pred cccccCCCc---c-----------cc----ccccccccccccccccchHHH-----------HHHH-HHHhhCCHHHHHH
Confidence 887665543 0 00 011111111122222333433 3334 7899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHH
Q 000357 1439 LLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEM 1518 (1619)
Q Consensus 1439 Ll~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iLf~m~~d~~~~~~~~~ie~~Lv~lc~~ 1518 (1619)
|+|||.+||+|||+||+|++||.+||+||..++ +|||||||++|+++||.|||+||.|+++.+ .+||+||+.+|.+
T Consensus 1380 l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~~~--~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~i~~~l~~~c~~ 1455 (1514)
T KOG0929|consen 1380 LLDILSESHEFAKQFNSDYELRTKLWRAGKGSQ--KPNLLRQETSSLACYLDILFRLLKDDPRVS--EEIESRLVTVCSE 1455 (1514)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcccCC--CcchhhHHHHHHHHHHHHHHHHhccCcccc--HHHHHHHHHHHHH
Confidence 999999999999999999999999999995544 899999999999999999999999999876 9999999999999
Q ss_pred HHHHHHccccchhHHHhhhhccccccccCCchhhhHhhhhhhHHHHHHHHhhcCChHHHHhhhhhhhHHHHHHHhcCCCc
Q 000357 1519 ILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSS 1598 (1619)
Q Consensus 1519 iL~~Y~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~Pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~Li~~e~~~ 1598 (1619)
||++|++++.+++ +|| +.. +++.|..|+|.||++||+++.++. +
T Consensus 1456 ~l~~y~~~~~~~~------------------------~a~----------~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~ 1499 (1514)
T KOG0929|consen 1456 VLKGYLSLTSETH------------------------EAW----------LTP-SDEEFSARAPLYYALLCAMCAFDL-D 1499 (1514)
T ss_pred HHHHHHhccccch------------------------hhh----------cCC-cHHHHhccCchHHHHHHHHHHcCC-c
Confidence 9999999999997 777 222 899999999999999999999985 6
Q ss_pred hhHHHHHHHHHHhhh
Q 000357 1599 REVQLVLGTMFQSCI 1613 (1619)
Q Consensus 1599 ~e~r~al~~~f~~rv 1613 (1619)
+++|++++.||. ||
T Consensus 1500 ~~~r~~~~~~~l-r~ 1513 (1514)
T KOG0929|consen 1500 PELRHLLRFFFL-RV 1513 (1514)
T ss_pred HHHHHHHHHhhh-hc
Confidence 799999999997 76
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-116 Score=1104.37 Aligned_cols=997 Identities=26% Similarity=0.383 Sum_probs=765.0
Q ss_pred HHHHHHhhccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhc-----ccCchHHH
Q 000357 199 LFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNS-----ALSVMAVF 273 (1619)
Q Consensus 199 vfr~lckLs~k~~~~~~~~d~~~~rsk~lsL~Ll~~iLe~~g~~f~~~~~~~~~ik~~Lc~sL~~n~-----~S~~~~vf 273 (1619)
.|..||+|.+-. +.. .+.-...+++|.||+++++-+|+.|+.||+|+..|++.++.+++.-. .|-.+.++
T Consensus 294 ~~h~l~sl~~~~----n~~-~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~L 368 (1386)
T KOG0928|consen 294 IFHFLLSLLNVT----NTV-AHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVL 368 (1386)
T ss_pred chhhhhhhcccc----ccc-cchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHH
Confidence 566677776532 211 12223468999999999999999999999999999999999999988 67778899
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHcCchhHHHHHHhcCCCCCCccHHH
Q 000357 274 QLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFE 353 (1619)
Q Consensus 274 ~lsl~If~~L~~~~r~~LK~Eievfl~~I~l~iLe~~~~~~~~qk~~vL~~l~~l~~dp~~lvelyvNYDCd~~~~NifE 353 (1619)
++-+.+..+|..++|.++|.|+|.||+.+..++......|+++|+.++||.+..+|+.|.+++|+|+|||||++|+||||
T Consensus 369 ql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfe 448 (1386)
T KOG0928|consen 369 QLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFE 448 (1386)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHH
Confidence 99999999999999999999999999999999988777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000357 354 RIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDG 433 (1619)
Q Consensus 354 ~lv~~Lsk~a~~~~~~~~~~~~~~qe~~l~~~aL~cLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 433 (1619)
++++.|+|.|++.....++...++ ++|+ ++.+|.+.+.......+. ++-
T Consensus 449 dl~k~LtknafP~sg~~tt~~i~~-------l~l~----~v~~l~e~~~~~l~~~d~--------------------~ef 497 (1386)
T KOG0928|consen 449 DLIKLLTKNAFPVSGPLTTASILP-------LDLE----GVLGLAENMIDELQDSDR--------------------EEF 497 (1386)
T ss_pred HHHHHHHHccCCcccccccccccc-------hHHH----HHHHHHHHHHhhccccCc--------------------Ccc
Confidence 999999999997654323222222 1233 344444433322111100 000
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHhHHHHHHHHHHhhcChhhhHHHHHhcCCCC--CCHHHHHHHHhcCCCCChhhHh
Q 000357 434 SVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG--DSPEEVASFLKNTTGLNETMIG 511 (1619)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~FN~~pkkgi~~L~~~~~i~--~~p~~iA~FL~~~~~Ldk~~iG 511 (1619)
.... .+....+-+.|.+|+++..|++.||+||||||+||+++|+|+ .+|..+|.||+.+++|||++||
T Consensus 498 ~~~k----------~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iG 567 (1386)
T KOG0928|consen 498 WTDK----------CEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIG 567 (1386)
T ss_pred ccCC----------cchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHH
Confidence 0000 001112223333699999999999999999999999999999 5999999999999999999999
Q ss_pred hhcccchhhhHHHHHHHHhhcCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCC-CCCCCccHHHHHHHH
Q 000357 512 DYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP-SSFTSADTAYVLAYS 590 (1619)
Q Consensus 512 eyLg~~~~~~~~vl~~y~~~~df~~~~~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np-~~f~~~d~~yvLays 590 (1619)
+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+|+||+||+|||.+|+ ++|+++|+||+||||
T Consensus 568 dfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYS 645 (1386)
T KOG0928|consen 568 DFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYS 645 (1386)
T ss_pred HHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhh
Confidence 99999998 789999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred HHHhhhhhhhccccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhhhhhhhhhcccccccch
Q 000357 591 VIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILN 670 (1619)
Q Consensus 591 iimLnTDlHn~~vk~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~~~~~~~~~~~~~~~~~d~~~n 670 (1619)
|||||||+||||||+|||.+||+||+||+|+|+|||++||++||++|+.+||+|+++|++...+.+..
T Consensus 646 IIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~------------ 713 (1386)
T KOG0928|consen 646 IIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYR------------ 713 (1386)
T ss_pred hheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999988765443222
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHHhhhcCCCCCCcceecCCccchhhhhHhhhHHHHHHHHhhhhccCcHHHHHHHHHH
Q 000357 671 LVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQG 750 (1619)
Q Consensus 671 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~piLaaLS~~l~~s~D~~~~~~~L~g 750 (1619)
|.. ++ .++...++.+.......+.|.||..+|+|++||++++|+.++++.+.++|++|
T Consensus 714 ---W~~-----------L~--------~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g 771 (1386)
T KOG0928|consen 714 ---WIN-----------LI--------SRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDG 771 (1386)
T ss_pred ---HHH-----------HH--------hcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHH
Confidence 211 11 12333445566666678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhcccCCccc----c------chhhHHHHHHHHHHHhhcCCchhhhhHHHHHHHH
Q 000357 751 FRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAAD----M------KQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLS 820 (1619)
Q Consensus 751 ~~~~i~Ia~~fgl~~~RDafV~sLakfT~L~~~~e----m------k~KNv~aik~LL~IA~~~Gn~L~~SW~~IL~~is 820 (1619)
+++|+.|+++||+++..|..+.+|||||.|.++.. . ..|-..|..+++-+|+..|++++.+|+.|++|+.
T Consensus 772 ~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l 851 (1386)
T KOG0928|consen 772 IRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLL 851 (1386)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987652 1 2355678999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCC-ccccCC-CCCCcchhhhcCCcccccccCCCCCCCCCHHHHH
Q 000357 821 RIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPS-LKKKGT-LQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQIN 898 (1619)
Q Consensus 821 ~le~lqLi~~g~~~d~~~~~~~~~~~~~~~~~s~~~~s-~~~~~~-~q~~~~~~~~~~~S~~st~~~~~~~~~lt~eei~ 898 (1619)
++.+++++...+.++..+.+- . . +..+ ...|. ....+. .+..+.++ +.++|.+.. +...++.+|+++++
T Consensus 852 ~l~r~~llp~~~~e~~~~~~~--~--~-~~~~-~~~~~~~~~~~k~~~ss~Lls--~fs~~Ls~d-~e~~~~~Ptee~l~ 922 (1386)
T KOG0928|consen 852 QLNRLVLLPLRLIEDLKNEPE--L--L-KLNK-LPVPQQEISINKPRKSSGLLS--RFSSYLSGD-EEEERPCPTEEELS 922 (1386)
T ss_pred HHHhhccCcHhhhhhhhcCcc--c--c-ccCC-CCCCccccCcccccccchHHH--HHHHhcCCc-ccccCCCCcHHHHh
Confidence 999999987775543322210 0 0 0000 00000 000000 00011111 112233221 22345678999998
Q ss_pred HHhhhhhhhhhhhcchhHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHH
Q 000357 899 HFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMW 978 (1619)
Q Consensus 899 ~~~~~~~~l~~i~s~~id~IF~~S~~L~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW 978 (1619)
....+ .+||.+|.++++|++|+.|..+++.+++++|...+...-...++.++|++++|+.|..-|.+||.+.|..+.
T Consensus 923 ~~~~a---~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~ 999 (1386)
T KOG0928|consen 923 ASKKA---LECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLSWFAVY 999 (1386)
T ss_pred hhHHH---hhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEeeehhhH
Confidence 77655 689999999999999999999999999999999987641112567899999999999999999999999999
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccC--ChHHHHHHHHHHHHHHHh
Q 000357 979 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG--SAEIRELIIRCISQMVLS 1056 (1619)
Q Consensus 979 ~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~--~~eIre~IL~cl~qmI~~ 1056 (1619)
+++-..|+..--.+ ......|+-.|.+++.|.+..+| ..-.++++++..+....+ ....-++|.--+.+++.+
T Consensus 1000 e~ll~~~~~~~~~~-~~lvek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~~lv~~ 1074 (1386)
T KOG0928|consen 1000 EHLLGLLIQTLMGS-PLLVEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVSKLVKA 1074 (1386)
T ss_pred HHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777543322 23455667677788999998543 224478899988776544 356778888889999999
Q ss_pred hcccccc--CcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHH
Q 000357 1057 RVSNVKS--GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAI 1134 (1619)
Q Consensus 1057 ~~~~IkS--GWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI 1134 (1619)
+..++++ ||+++|..|..+++.+. .-..+|..+.-.+.|--+.. ++.|..||+|...|+..+.. .+
T Consensus 1075 n~~~v~~~~~w~~~~slL~~~~~h~~--a~~~~~~~~l~~m~e~~hl~----~~~fe~~v~~~~~fve~~~~------~~ 1142 (1386)
T KOG0928|consen 1075 NAANVHSKDGWALLFSLLELTARHPE--ADFLKFYRLLSKMSEASHLT----PDNFELYVDCGSTFVEARVG------QI 1142 (1386)
T ss_pred HHHHhhccccHHHHHHHHHHHhcCCc--hhHHHHHHHHHHhhccccCC----hHHHHHHHHHHHHHHHHHHH------HH
Confidence 9988866 99999999999987543 34455655554555544433 58999999999999855321 01
Q ss_pred HHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCC-CCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHH
Q 000357 1135 AFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSF-SDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFN 1213 (1619)
Q Consensus 1135 ~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~ 1213 (1619)
..--..-|.++..+... .+...+ .++...++... .........|.+|+.++.++|.++|.+||+.||+.|.+
T Consensus 1143 ~~~l~~lde~s~sg~~~-~kw~~~------~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr 1215 (1386)
T KOG0928|consen 1143 MRSLSLLDEMSSSGEVL-DKWEIE------AKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQR 1215 (1386)
T ss_pred HHhcchhhhhcccccch-hHHHHH------HhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHH
Confidence 00000112222111100 000000 00000001101 11222344999999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhh
Q 000357 1214 ILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVR 1293 (1619)
Q Consensus 1214 iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~ 1293 (1619)
++-.-+..+.+..|..||+.|+||+++.+....... ++...-|..|..+|.+.++++|.+|+..+.
T Consensus 1216 ~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~--------------~~~~~~me~t~~~~~~Ll~k~~L~~lq~ls 1281 (1386)
T KOG0928|consen 1216 IIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDA--------------SEKGNEMEVTLLLATKLLSKVFLQELQDLS 1281 (1386)
T ss_pred HHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccc--------------ccccchHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 877888999999999999999999999987633221 111113578999999999999999998765
Q ss_pred ------hhHHHHHHHHHhcccCCC-----CchhHHHHHHHHHHHH
Q 000357 1294 ------SQLPGVVSILTGFIRSPI-----QGPASTGVAALLHLAG 1327 (1619)
Q Consensus 1294 ------~ll~~lL~lL~~~I~q~~-----~~ia~ig~~cL~~Li~ 1327 (1619)
.+|.++++++..|+.-.. +.+..+..+.+++.+.
T Consensus 1282 ~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~ 1326 (1386)
T KOG0928|consen 1282 SLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLL 1326 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhh
Confidence 479999999999998653 6778888888887776
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=8.5e-92 Score=900.40 Aligned_cols=991 Identities=25% Similarity=0.342 Sum_probs=756.4
Q ss_pred HHHHHhhccCCCCCCCCcc--hhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Q 000357 200 FKNICKLSMKFSSQENPDD--LILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQC 277 (1619)
Q Consensus 200 fr~lckLs~k~~~~~~~~d--~~~~rsk~lsL~Ll~~iLe~~g~~f~~~~~~~~~ik~~Lc~sL~~n~~S~~~~vf~lsl 277 (1619)
+|.+|++..+..+..+..+ .+++|+|+.+|++++++|..+. .|+.++++|+|+.+.++++|+..+||+.+|
T Consensus 1 ~~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~ 73 (1024)
T COG5307 1 KRVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGL 73 (1024)
T ss_pred CchHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhH
Confidence 4778888887555544333 5899999999999999998776 699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHcCchhHHHHHHhcCCCCC-CccHHHHHH
Q 000357 278 SIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD-SPNIFERIV 356 (1619)
Q Consensus 278 ~If~~L~~~~r~~LK~Eievfl~~I~l~iLe~~~~~~~~qk~~vL~~l~~l~~dp~~lvelyvNYDCd~~-~~NifE~lv 356 (1619)
+|+|.++..++.++|.|+++||..+|+++++.. +++..||..-|...++.|..|+ ++.|+||||... ..|++++..
T Consensus 74 ~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~ 150 (1024)
T COG5307 74 EIIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTA 150 (1024)
T ss_pred HHHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccC
Confidence 999999999999999999999999999999876 5778899999999999999999 999999999987 899999999
Q ss_pred HHHHHhccCCCCCCC---------CC-------CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCCCCCC
Q 000357 357 NGLLKTALGPPPGST---------TS-------LSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIG-----ETYLPKG 415 (1619)
Q Consensus 357 ~~Lsk~a~~~~~~~~---------~~-------~~~~qe~~l~~~aL~cLv~il~sl~~w~~~~~~~~-----~~~~~~~ 415 (1619)
..+++.+...|+-.- .+ +....++..+.....|.+.+++++.. ..+... ....+-.
T Consensus 151 ~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~~s~~~~~~~~~~~s 227 (1024)
T COG5307 151 FPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLVPSAYYTNKDVPPLS 227 (1024)
T ss_pred CccccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccchhhhhcccCCCCcc
Confidence 999987754443210 00 01123567889999999999998862 111100 0000000
Q ss_pred CCCCCCC--CCCC-CCCCCCCCCCCccccccCCCCCCChHHHHHHHHhHHHHHHHHHHhhcChhhhHHHHHhcCCCC-CC
Q 000357 416 SETDSSI--DNNS-IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG-DS 491 (1619)
Q Consensus 416 ~~~~~s~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~FN~~pkkgi~~L~~~~~i~-~~ 491 (1619)
.|...+. +.+. ..++ ..+ ++.....+........|++|+.+++|+..||.+|++||..|.+.+++. ++
T Consensus 228 ~e~~~~~~~~~~~~~~~~------~~d--~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~ 299 (1024)
T COG5307 228 GEGLVSGSKSMVNSMKNS------SRD--SSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDS 299 (1024)
T ss_pred cchhhhcCCccccccccc------ccC--hhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCccc
Confidence 0100000 0000 0000 000 000000011112223677899999999999999999999999999998 48
Q ss_pred HHHHHHHHhcCCC-CChhhHhhhcccchhhhHHHHHHHHhhcCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHH
Q 000357 492 PEEVASFLKNTTG-LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 570 (1619)
Q Consensus 492 p~~iA~FL~~~~~-Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y 570 (1619)
+.++|.||..+.+ +||+.+|+|||++++.|.+||++|+++|||+|++||+|||.||+.||||||+|+|||+||+||++|
T Consensus 300 ~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y 379 (1024)
T COG5307 300 HKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKY 379 (1024)
T ss_pred chHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHH
Confidence 9999999998876 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCc-cHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCC
Q 000357 571 CKCNPSSFTSA-DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 649 (1619)
Q Consensus 571 ~~~np~~f~~~-d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~ 649 (1619)
|+|||+.|.++ |+||+||||+||||||+|||++|.|||++||++|++|+|+|+|||++||+++|+.|+++||+++++++
T Consensus 380 ~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~ 459 (1024)
T COG5307 380 YSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHH 459 (1024)
T ss_pred HHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhhhhhhhhhcccccccchhhhhhhhHHHHhhhhHHHHHHHHHHhhhcCCCCCCcceecCCccchhhhhHhhhHHHHH
Q 000357 650 APESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLA 729 (1619)
Q Consensus 650 ~~~~~~~~~~~~~~~~d~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~piLa 729 (1619)
....+....+....... ..+. .+ +++......+.+.+|+.++++.+|.++++
T Consensus 460 ~~~~~~~~~~~~~~ss~--------------------~~~~----~~----~rd~~~~~~~~~f~~v~~~~et~~~~i~~ 511 (1024)
T COG5307 460 SSETSPEDNWPSLDSSF--------------------TNIA----EF----GRDNQRVADATHFDHVGPIFETSLFPILM 511 (1024)
T ss_pred cccccccccchhhhhhh--------------------hhhh----hc----ccccccchhHhhhhhcchHHHHHHHHHHh
Confidence 54433222221110000 0000 01 11112222467889999999999999999
Q ss_pred HHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHHhhcCCchh
Q 000357 730 AFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQ 809 (1619)
Q Consensus 730 aLS~~l~~s~D~~~~~~~L~g~~~~i~Ia~~fgl~~~RDafV~sLakfT~L~~~~emk~KNv~aik~LL~IA~~~Gn~L~ 809 (1619)
+++..+..++....+..|. ++|+.|.++.+|++|+.+++++|.|++.. ..+|+++.
T Consensus 512 s~s~~~~~s~~~~si~~~~-------~ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~~~~ 567 (1024)
T COG5307 512 SASDDLYSSDGVVSISKCT-------RIAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGPYLF 567 (1024)
T ss_pred hhcchhcccccchHhhccc-------chhhcceecchhHHHHHHhhccCCccccC-----------------cccccccc
Confidence 9999999888876665554 49999999999999999999999987754 67899999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCcccccccCCCCC
Q 000357 810 EAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSP 889 (1619)
Q Consensus 810 ~SW~~IL~~is~le~lqLi~~g~~~d~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~q~~~~~~~~~~~S~~st~~~~~~~ 889 (1619)
..|.+++.++++++.++.|+.|.. +. + +.+-......+.. .+...+++.. ... ......++...-...+
T Consensus 568 ~~~~d~~~~is~~~~~~~i~~~~~-~q--l--~~v~~~~~~~k~~-~~~i~~s~~~--~~i-~~~~~~~~~~~l~~~~-- 636 (1024)
T COG5307 568 IPSEDSLLSISVLELAARIGRGFE-DQ--L--SDVKLFRLRSKSG-NKEILSSSLL--SNI-ENKSLKLYLSSLIEDG-- 636 (1024)
T ss_pred CccccccchhhHHHHHHHhcccch-hh--c--chhHHhHHhhccc-cccccchhhh--hhh-hhhHhhhhhhhhcCCC--
Confidence 999999999999999999998872 21 1 1111100000000 0000000000 000 0000000000000000
Q ss_pred CCCCHHHHHHHhhhhhhhhhhhcchhHHHHHhcccCCH-HHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhccc
Q 000357 890 GLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNS-EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMN 968 (1619)
Q Consensus 890 ~~lt~eei~~~~~~~~~l~~i~s~~id~IF~~S~~L~~-eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~ 968 (1619)
....++.. ......++. ...++++...+.++. .++++++++++... + ..| .+|+.++++++||.
T Consensus 637 ~~~~~~~~-~~~~~~~~~-----~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d---~---~~~---~~q~~v~~s~~n~~ 701 (1024)
T COG5307 637 KHFSPSIV-KKLGSPELP-----KLNPDISSGKSKLSVWSAVLSVFKAILSSD---L---PSP---PLQKEVDISKKNVD 701 (1024)
T ss_pred cccccccc-ccccCcccc-----ccCcccccccccccccchHHHHHHHHHhcc---C---CCC---CcHHhhhHHhhhhh
Confidence 00011000 000001111 236789999999998 89999999999922 1 123 89999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHH
Q 000357 969 RIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIR 1048 (1619)
Q Consensus 969 Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~ 1048 (1619)
||+.+ ..||+++...+..++++.+..+..+++++.+|++++|++.+|+.+|.||..|+.|+++.+.......|++..+.
T Consensus 702 ~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~ 780 (1024)
T COG5307 702 IIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIG 780 (1024)
T ss_pred hhhhh-hHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehh
Confidence 99998 99999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCcc
Q 000357 1049 CISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSD 1128 (1619)
Q Consensus 1049 cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~n 1128 (1619)
|..++++.+...+.+| +++|.++..+..... +...++.+.. .+ .+. ...++|.+.+-+-.....+..++.
T Consensus 781 ~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~~~--~e---~v~-s~~n~f~~~~~~~~~~~~~~~~~~ 850 (1024)
T COG5307 781 CSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSLSN--DE---LVL-SQENLFIELLSSKNEGKQNDKNLE 850 (1024)
T ss_pred hHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHhcc--hh---hhh-ChhhHHHHHHhhhHHHHHhccchh
Confidence 9999999999999999 999999987764322 4555554422 12 222 123889999988888887777888
Q ss_pred ccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhc-cCChHHHHHHH
Q 000357 1129 VCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLT-SDSRSTIRKSS 1207 (1619)
Q Consensus 1129 iSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~-~d~r~eVR~~A 1207 (1619)
+.++++++++........... ... ....++...+.|+++|.++.++. +-...++
T Consensus 851 ~~~~~~~~~~~~~~~~~~wk~-------------------~~~--~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~---- 905 (1024)
T COG5307 851 LRLHSVDYLRFLLPNVENWKN-------------------LSS--VLSANSNFSKDIFSYLEKYVKIGSSALDLEN---- 905 (1024)
T ss_pred hhhccHHHHHHHhHHHHHHHH-------------------HHH--HHHhhhhhhHHHHHHHHHHHHhchhhhhHHH----
Confidence 888888888776555432100 000 00111223679999999999985 5677777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHH
Q 000357 1208 LEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFIC 1287 (1619)
Q Consensus 1208 LqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~ 1287 (1619)
|..+..+...|...+|+.+++.-++|++.......... .... +++...+|+++|...|+...+.+|.+
T Consensus 906 ----f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~ 973 (1024)
T COG5307 906 ----FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDK-------TNLD-NDEIELVWASTDLLAALKEFIELFNS 973 (1024)
T ss_pred ----HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCcccc-------cccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865311110 0111 23566789999999999999999999
Q ss_pred HhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 000357 1288 FFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTA 1350 (1619)
Q Consensus 1288 yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~i~~~l~~~f~ 1350 (1619)
+|+.+. ++.+.+.++..| .+|.+++...+...|.+-.|+++...+.++|.
T Consensus 974 ~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 1023 (1024)
T COG5307 974 IFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWNKIDVPTNELFY 1023 (1024)
T ss_pred HHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHHHhhcccchhcc
Confidence 999999 999999999999 78999999999999999999999888777664
No 5
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-50 Score=438.17 Aligned_cols=191 Identities=52% Similarity=0.886 Sum_probs=185.7
Q ss_pred HhHHHHHHHHHHhhcChhhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCC
Q 000357 459 AYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 538 (1619)
Q Consensus 459 ~~K~~l~~~~~~FN~~pkkgi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 538 (1619)
++-+.+..|-.+||.+|+|||+||+++.++..+|++||+||+.-.||+|++||+|||+++++|++||++|++...|++++
T Consensus 60 q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dln 139 (395)
T KOG0930|consen 60 QRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDLN 139 (395)
T ss_pred HHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccch
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhcC
Q 000357 539 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRG 618 (1619)
Q Consensus 539 ~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~~f~~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~g 618 (1619)
++.|||.||=+||||||||||||+||+||+|||.|||++|.|+|++|+|+||+|||||.||||+||.|-+++.||.+|||
T Consensus 140 lVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNrg 219 (395)
T KOG0930|consen 140 LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNRG 219 (395)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcccccCCCCC
Q 000357 619 IDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 649 (1619)
Q Consensus 619 i~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~ 649 (1619)
||.|.|+|+|.|..+|++|+.++++.++|..
T Consensus 220 ineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 220 INEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 9999999999999999999999999998854
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=8.9e-50 Score=435.54 Aligned_cols=183 Identities=60% Similarity=1.012 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHhhcChhhhHHHHHhcCCC-CCCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCC
Q 000357 460 YKIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 538 (1619)
Q Consensus 460 ~K~~l~~~~~~FN~~pkkgi~~L~~~~~i-~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 538 (1619)
+|..+++|+.+||++|++||+||++.+++ .++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 37789999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCCCCC-CccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhc
Q 000357 539 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT-SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 617 (1619)
Q Consensus 539 ~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~~f~-~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~ 617 (1619)
|++|||.||.+|+||||+|+|||||+.||++||+|||+.+. |+|++|+||||+||||||+|||++|+|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccc
Q 000357 618 GIDDGKDLPEEYLGVLYDQIVKNEI 642 (1619)
Q Consensus 618 gi~~~~d~p~~~L~~iY~~I~~~ei 642 (1619)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=2.3e-49 Score=435.30 Aligned_cols=185 Identities=53% Similarity=0.965 Sum_probs=169.9
Q ss_pred HHhHHHHHHHHHHhhcChhhhHHHHHhcCCC--CCCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCC
Q 000357 458 RAYKIELQKGISLFNRKPSKGIEFLINSKKV--GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK 535 (1619)
Q Consensus 458 k~~K~~l~~~~~~FN~~pkkgi~~L~~~~~i--~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~ 535 (1619)
|++|..+.+|+.+||.+|++||+||+++|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 5678999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCC--CCCCccHHHHHHHHHHHhhhhhhhccccCCCCHHHHH
Q 000357 536 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 613 (1619)
Q Consensus 536 ~~~~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~--~f~~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi 613 (1619)
|++|++|||.||..|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 000357 614 RNNRGIDDGKDLPEEYLGVLYDQIVKNEI 642 (1619)
Q Consensus 614 ~n~~gi~~~~d~p~~~L~~iY~~I~~~ei 642 (1619)
+|++|+++++++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-45 Score=438.82 Aligned_cols=947 Identities=18% Similarity=0.245 Sum_probs=608.3
Q ss_pred hhhHHHHHHHHhhcCCCCCChHHHHHHHhccCC--CC-----CchHHHHHHHHHHHHHHHhh-----CCC----------
Q 000357 519 EFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFR--LP-----GEAQKIDRIMEKFAERYCKC-----NPS---------- 576 (1619)
Q Consensus 519 ~~~~~vl~~y~~~~df~~~~~~~ALR~fl~~fr--LP-----gEaQ~Idri~e~Fa~~y~~~-----np~---------- 576 (1619)
...++.++..|.++|= +. --+-|.|++... +| .-+-..|.++..||-++|+. .|+
T Consensus 362 aLSidalKnivamlde--ad-QhSahkFfqdlEgllpkLiadsfscedDTalnnFalkccegvsdicspdeDgensfdfq 438 (1777)
T KOG1846|consen 362 ALSIDALKNIVAMLDE--AD-QHSAHKFFQDLEGLLPKLIADSFSCEDDTALNNFALKCCEGVSDICSPDEDGENSFDFQ 438 (1777)
T ss_pred HhhHHHHHHHHHHHhh--HH-HHHHHHHHHhhhhhHHHHHhhccchhhHHHHHHHHHHHhcCcccccCCCCCccchhhHH
Confidence 4556666665555441 11 112356665554 44 23467899999999999975 343
Q ss_pred CCCCccHHHHHHHHHHHhhh-h-hhhcc----cc----CCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCC
Q 000357 577 SFTSADTAYVLAYSVIMLNT-D-AHNSM----VK----DKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNA 646 (1619)
Q Consensus 577 ~f~~~d~~yvLaysiimLnT-D-lHn~~----vk----~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~ 646 (1619)
...|||.-|..|..-.++|. . .|..- -| .+-|..+|++....-.-.--+.+.+.++||+.|.....-..+
T Consensus 439 mlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKdFmkalqeSgldiiaapanieeideaiLdfnmlfea 518 (1777)
T KOG1846|consen 439 MLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKDFMKALQESGLDIIAAPANIEEIDEAILDFNMLFEA 518 (1777)
T ss_pred HhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHHHHHHHHhcCceeeeccccHHHHHHHHHhhhhcccc
Confidence 24588999988888888882 2 22221 11 266889999988543222346788999999999986644322
Q ss_pred CCCCchhhhhhhhhhcccccccchhhhhhhhHHHHhhhhHHHHHHH----HHHhhhcCCCCCCcceecCCccchhhhhHh
Q 000357 647 DSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRI----QEQFKSKSGKSESLYHAVTDPGILRFMVEV 722 (1619)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~d~~~n~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~ 722 (1619)
..-+......-...+. +...+|.... .+..+ ++..++.+- -+..+.+.. .+. .+.++.+.|...--
T Consensus 519 gfcgshaDaskpliki--lqdflntdag--lesaa--aggcliahaaTeslealkkrid--dSg--cVagVAfarldkVf 588 (1777)
T KOG1846|consen 519 GFCGSHADASKPLIKI--LQDFLNTDAG--LESAA--AGGCLIAHAATESLEALKKRID--DSG--CVAGVAFARLDKVF 588 (1777)
T ss_pred ccccCchhccccHHHH--HHHhhhhhHH--HHHHh--hcceeeccccccCHHHHhhhcc--ccc--ceeehhhhHHHHhh
Confidence 1111000000000000 0000111000 00000 111111100 001111111 111 23455566666667
Q ss_pred hhHHHHHHHHhhhhc-----cC----------------------cHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 000357 723 CWGPMLAAFSVTLDQ-----SD----------------------DKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVA 775 (1619)
Q Consensus 723 ~W~piLaaLS~~l~~-----s~----------------------D~~~~~~~L~g~~~~i~Ia~~fgl~~~RDafV~sLa 775 (1619)
+|..+..+++.+.-. .. .++....-.+|++++++++|..|....++..++-|+
T Consensus 589 cnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqddaeCmeedglakaarlscaagvaaicasalaflA 668 (1777)
T KOG1846|consen 589 CNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQDDAECMEEDGLAKAARLSCAAGVAAICASALAFLA 668 (1777)
T ss_pred hhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhcchhhhchhhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 899888888776211 00 123455668999999999999998888887666665
Q ss_pred HhcccC---------Cccc--c---------------------chhhHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHH
Q 000357 776 KFTYLH---------CAAD--M---------------------KQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIE 823 (1619)
Q Consensus 776 kfT~L~---------~~~e--m---------------------k~KNv~aik~LL~IA~~~Gn~L~~SW~~IL~~is~le 823 (1619)
-...-. .+.+ | ..-++.|+.+.|+....-|.+-.++|+++.+....+-
T Consensus 669 aaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehlaetlCceadLrddaeaGshnddcqkhtcrscEhlg 748 (1777)
T KOG1846|consen 669 AAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAETLCCEADLRDDAEAGSHNDDCQKHTCRSCEHLG 748 (1777)
T ss_pred HHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhcCCCCccccccchHHHHHH
Confidence 443221 1111 1 1235568888899999999999999999988754433
Q ss_pred HHHHh--cCCC--CCCccccccccc-----------hhhhhhcccCCCCCccccCCC-------CCCcc-----------
Q 000357 824 HLQLL--GEGA--PTDASFLTVSNV-----------EADEKTQKSMGFPSLKKKGTL-------QNPSV----------- 870 (1619)
Q Consensus 824 ~lqLi--~~g~--~~d~~~~~~~~~-----------~~~~~~~~s~~~~s~~~~~~~-------q~~~~----------- 870 (1619)
.++.. ..|. ++..-.--.|+. +-+++ +.. .+.-|+++. +.-+.
T Consensus 749 alehnhdeagaaihalscskcseqkaegeagilGdaeCeek---Ppe-hkferqgredkeadkeeklsaaDlsiEgalGd 824 (1777)
T KOG1846|consen 749 ALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEK---PPE-HKFERQGREDKEADKEEKLSAADLSIEGALGD 824 (1777)
T ss_pred HHHhhcccccccCCccchhccchhhhhccccccCChhhcCC---Ccc-cChhhcCcccccccccccccHHhhhhccccCC
Confidence 33321 2221 110000000100 00000 000 000011100 00000
Q ss_pred hhhhcCCcccccccCCCCCCCCCHHHHHHHhhhhhhhhhhhcchhHHHHHhc-ccCCHHHHHHHHHHHHHhchhhcCCC-
Q 000357 871 MAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHS-QRLNSEAIVAFVKALCKVSISELQSP- 948 (1619)
Q Consensus 871 ~~~~~~~S~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i~s~~id~IF~~S-~~L~~eAiv~FV~ALc~vS~eEl~s~- 948 (1619)
....+|||..|.. ..+. +-|..+..+||+|+.. ..|...|+.+|.-|+.+.|...+..+
T Consensus 825 apdfrggslmSgh------------Saak-------aictLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsv 885 (1777)
T KOG1846|consen 825 APDFRGGSLMSGH------------SAAK-------AICTLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSV 885 (1777)
T ss_pred Ccccccccccccc------------hHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeee
Confidence 0112233322211 1111 2355567899999986 88999999999999999999887642
Q ss_pred --------CCC--------c--cchHHHHHHHHh---hcccccccchhhHHHHHHHHHHHh-ccCCchhHHHHHHHHHHH
Q 000357 949 --------TDP--------R--VFSLTKLVEIAH---YNMNRIRLVWSRMWNVLSDFFVSV-GLSENLSVAIFVMDSLRQ 1006 (1619)
Q Consensus 949 --------~~P--------r--~FsLqKLvEVa~---~Nm~Rirl~W~~IW~vL~~hf~~v-gch~n~~Va~~AiDsLrQ 1006 (1619)
..| | ...|.||.+... ....|+.++-+.+|..++.||+++ +||...+|+..|+..+..
T Consensus 886 TaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiad 965 (1777)
T KOG1846|consen 886 TAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIAD 965 (1777)
T ss_pred ccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 123 3 577888888332 223499999999999999999999 899999999999999999
Q ss_pred HHHHhh-chhhhhchhhhhhhHHHHHHHHhcc-CChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHH--
Q 000357 1007 LAMKFL-EREELANYNFQNEFLRPFVIIMQKS-GSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKN-- 1082 (1619)
Q Consensus 1007 Ls~kfL-e~eEL~~f~FQk~fLkPFe~Im~~s-~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~-- 1082 (1619)
+.++.| .+.|-++|+|++.++.||+.+|+.. ++.+++++++..+.++|+.++++|.||||++|+.|.++...+..+
T Consensus 966 ilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemk 1045 (1777)
T KOG1846|consen 966 ILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMK 1045 (1777)
T ss_pred HHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHH
Confidence 999988 5789999999999999999999874 799999999999999999999999999999999999987543221
Q ss_pred --HH---------HHHHHHHHH-HHhcccCCccccccchHHHHHHHHHHHHcCCC-----------------CccccHHH
Q 000357 1083 --IV---------LLAFETMEK-IVREYFPHITETESTTFTDCVKCLLTFTNSRF-----------------NSDVCLNA 1133 (1619)
Q Consensus 1083 --iV---------~~aF~~l~~-I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~-----------------d~niSL~A 1133 (1619)
++ .-+|++++. +..|..+.+ .++...||.||.+|.++-. ..+++|.|
T Consensus 1046 aaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleevDckeigdcapapgapstdKOGaA 1121 (1777)
T KOG1846|consen 1046 AALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAA 1121 (1777)
T ss_pred HHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHH
Confidence 22 257888884 444666554 5899999999999986522 35788999
Q ss_pred HHHHHHHHHHhhcC---Ccccc----------cCCCCC-CCCCCCCCC--C-CCcccCCCCcccchhhHHHHHHHHhhhc
Q 000357 1134 IAFLRFCAVKLADG---GLVCN----------EKGSVD-GSSSPPVND--N-APDLQSFSDKDDNSSFWVPLLTGLSKLT 1196 (1619)
Q Consensus 1134 I~~L~~~~~~L~~~---~l~~~----------~~~~~~-~~~~~p~~~--~-~~~~~~~~~~~~~~~lW~pLL~~Ls~l~ 1196 (1619)
+++|.+|+.-++.. +.+.+ .+..+. ...+.|... + ..-...+.+...-..+|+.+|+.+....
T Consensus 1122 LdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsamdeDgIEsphgpfpvledfdddiagiElfiiflEQicaal 1201 (1777)
T KOG1846|consen 1122 LDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAAL 1201 (1777)
T ss_pred HHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhhcccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 99999998877654 22110 000000 000000000 0 0001123344456789999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHH--h
Q 000357 1197 SDSRSTIRKSSLEVLFNILKDHGHLF-PRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSE--T 1273 (1619)
Q Consensus 1197 ~d~r~eVR~~ALqtLF~iL~~~G~~f-~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~e--T 1273 (1619)
.++.+.-++.-|..+|++|.....+. ++.|.-.+...+|+|.++.|..+. +-+.+.|+.. -
T Consensus 1202 lncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl----------------dkdesywdmakai 1265 (1777)
T KOG1846|consen 1202 LNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL----------------DKDESYWDMAKAI 1265 (1777)
T ss_pred hcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh----------------chhhhhHHHHHHH
Confidence 89999999999999999999887655 899999999999999999986532 4566789644 4
Q ss_pred HHHHHHHHHHHHHHHh-------------chhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000357 1274 AAIGAECLVDIFICFF-------------DVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1340 (1619)
Q Consensus 1274 ~~~AL~~lv~LF~~yf-------------~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~ 1340 (1619)
..+|+..-+.+...+. ..++.|+.+.+.+...|...+.+.+.++|++|++..+...|++|++++|+.
T Consensus 1266 fKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkFseemWni 1345 (1777)
T KOG1846|consen 1266 FKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKFSEEMWNI 1345 (1777)
T ss_pred HHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccccHHHHHH
Confidence 5677776666555544 234567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHh----hcccCccc--------cCCCCCCccccc-----------------cCCCCCCC----
Q 000357 1341 ILLALKETTASTLPSFVKV----LRTMNDIE--------IPNTSQSYADME-----------------MDSDHGSI---- 1387 (1619)
Q Consensus 1341 i~~~l~~~f~~T~p~~~~~----~~~~~~~~--------vp~~~~~~~~~~-----------------~~~~~~~~---- 1387 (1619)
.|++|.++|..|+-+...+ ++++.+++ +.....+.++.+ +.+..+.+
T Consensus 1346 accaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerqlIaAmaqlsfmkdkqcgpkkpeeeDha 1425 (1777)
T KOG1846|consen 1346 ACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQLIAAMAQLSFMKDKQCGPKKPEEEDHA 1425 (1777)
T ss_pred HHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhh
Confidence 9999999999999987654 33433322 111222222211 11111100
Q ss_pred --------CCCcchhhhh---hhhh--HHHhhhhhHHHHHHHHHHHHHHHH-----------------------HHhccC
Q 000357 1388 --------NDNIDEDNLQ---TAAY--VVSRMKSHITLQLLSVQVAANLYK-----------------------LHLRLL 1431 (1619)
Q Consensus 1388 --------~~~~~~~~~~---~~~~--~~~~~k~~cvlQLlLIq~v~el~~-----------------------~~~~~l 1431 (1619)
-+..++.|.+ +..| .++.+.+||+ |+|.+.+|+- .+.++|
T Consensus 1426 qgcaLIielhgadkpnghtkhrlefheIisSLfsHcl----LLQliadiLLeEdskgPklgaekigqtpeadlagflryi 1501 (1777)
T KOG1846|consen 1426 QGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCL----LLQLIADILLEEDSKGPKLGAEKIGQTPEADLAGFLRYI 1501 (1777)
T ss_pred hcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCCccccccCCCcchhhHHHhc
Confidence 0112223333 2222 2455566774 4555666541 277899
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHH
Q 000357 1432 STTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESH 1511 (1619)
Q Consensus 1432 ~~~~l~~Ll~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iLf~m~~d~~~~~~~~~ie~~ 1511 (1619)
+.+.+-+++++|.+||+-|++|++++.|..+|.|+-.+-+ .+|||||...|+.+|.+.|-.-.+-+...-...++.+.
T Consensus 1502 ddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigg--aANLlkasalsfnilfhalscavLlnqeeiTaeqvkke 1579 (1777)
T KOG1846|consen 1502 DDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGG--AANLLKASALSFNILFHALSCAVLLNQEEITAEQVKKE 1579 (1777)
T ss_pred chhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999877766 79999999999999999888555433322223445555
Q ss_pred HHHHHHHHHHHHHccc
Q 000357 1512 LVEACEMILQMYLNCT 1527 (1619)
Q Consensus 1512 Lv~lc~~iL~~Y~~~~ 1527 (1619)
|.+=-....+.-..|.
T Consensus 1580 LfeddakatdSrqqcs 1595 (1777)
T KOG1846|consen 1580 LFEDDAKATDSRQQCS 1595 (1777)
T ss_pred hchhhhhhhcchhhcc
Confidence 5554444444333333
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=5e-49 Score=431.01 Aligned_cols=183 Identities=57% Similarity=0.946 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHhhcChhhhHHHHHhcCCCC-CCHHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCC
Q 000357 460 YKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 538 (1619)
Q Consensus 460 ~K~~l~~~~~~FN~~pkkgi~~L~~~~~i~-~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 538 (1619)
+|..+.+|+.+||.+|++||+||++.+++. ++|++||+||+.+++|||++||+|||++++++.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 467799999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCCCCC--CccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhh
Q 000357 539 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT--SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNN 616 (1619)
Q Consensus 539 ~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~~f~--~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~ 616 (1619)
|++|||.||..|+||||+|+|||||++||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhccc
Q 000357 617 RGIDDGKDLPEEYLGVLYDQIVKNEI 642 (1619)
Q Consensus 617 ~gi~~~~d~p~~~L~~iY~~I~~~ei 642 (1619)
+|+++|.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-49 Score=452.50 Aligned_cols=194 Identities=44% Similarity=0.813 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhhHhhhcccc-hhhhHHHHHHHHhhcCCCCCCh
Q 000357 461 KIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGER-EEFSLKVMHAYVDSFNFKGMDF 539 (1619)
Q Consensus 461 K~~l~~~~~~FN~~pkkgi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~-~~~~~~vl~~y~~~~df~~~~~ 539 (1619)
|....-|..+||.||.|||+||++.||++++|..||+||+...||+|+|||||||.. ++||..||+|+++.|||++|.+
T Consensus 198 kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssmel 277 (627)
T KOG0931|consen 198 KRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMEL 277 (627)
T ss_pred HHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccchH
Confidence 445555999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhhCCC---CCCCccHHHHHHHHHHHhhhhhhhcccc--CCCCHHHHHH
Q 000357 540 GHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS---SFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIR 614 (1619)
Q Consensus 540 ~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~~~np~---~f~~~d~~yvLaysiimLnTDlHn~~vk--~kmt~~~Fi~ 614 (1619)
|+|||+|...||+|||||||||++|+||.|||.|||. .|.|.||+|+|||+|||||||+|+|+|| +||+++||||
T Consensus 278 DeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFik 357 (627)
T KOG0931|consen 278 DEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIK 357 (627)
T ss_pred HHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999998 4999999999999999999999999999 8999999999
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhh
Q 000357 615 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESK 654 (1619)
Q Consensus 615 n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~~~~~~ 654 (1619)
|.||.|+|.|+|++.|.+||++|+++|++..+||....++
T Consensus 358 NLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqk 397 (627)
T KOG0931|consen 358 NLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQK 397 (627)
T ss_pred hccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHH
Confidence 9999999999999999999999999999999999765544
No 11
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-42 Score=432.67 Aligned_cols=538 Identities=17% Similarity=0.200 Sum_probs=387.5
Q ss_pred cchhhhhHhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHhcccCC-----------
Q 000357 714 GILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHC----------- 782 (1619)
Q Consensus 714 ~~vr~Mfe~~W~piLaaLS~~l~~s~D~~~~~~~L~g~~~~i~Ia~~fgl~~~RDafV~sLakfT~L~~----------- 782 (1619)
+..+.|....|..++++++..+..+.|+.+....+.+....+..||..+-++...+++.+||+|+....
T Consensus 523 e~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s 602 (1610)
T KOG1848|consen 523 EIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNS 602 (1610)
T ss_pred hhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccc
Confidence 445566777899999999999999999999999999999999999999999999999999999985321
Q ss_pred --c----------------------------------------cccchhhHHHHHHHHHHHhhcCCchhhhhHHHHHHHH
Q 000357 783 --A----------------------------------------ADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLS 820 (1619)
Q Consensus 783 --~----------------------------------------~emk~KNv~aik~LL~IA~~~Gn~L~~SW~~IL~~is 820 (1619)
+ .-++.||+.|+|+.++++.++-+.++.+|.+++.+.+
T Consensus 603 ~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~ 682 (1610)
T KOG1848|consen 603 ESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTS 682 (1610)
T ss_pred cCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 0 0135799999999999999999999999999999887
Q ss_pred HHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCcccccccCCCCCCCCCHHHHHHH
Q 000357 821 RIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHF 900 (1619)
Q Consensus 821 ~le~lqLi~~g~~~d~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~q~~~~~~~~~~~S~~st~~~~~~~~~lt~eei~~~ 900 (1619)
.+++.- . +.|... .-....+ .+.+|..++.+-.. .
T Consensus 683 ~ls~~~---~-m~p~qt---------~l~v~t~-------------------------------~~~hp~~p~~~~~~-~ 717 (1610)
T KOG1848|consen 683 SLSQPA---Y-MEPLQT---------LLAVITS-------------------------------SSVHPIQPLTAPRQ-S 717 (1610)
T ss_pred Hhcchh---h-cCHHHh---------hHHHHhc-------------------------------CCCCCCCcchhhHH-H
Confidence 666421 0 000000 0000000 00011111111001 1
Q ss_pred hhhhhhhhhhhcchhHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCC-----CCCcc--chHHHHHHHHhhcccccccc
Q 000357 901 IANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSP-----TDPRV--FSLTKLVEIAHYNMNRIRLV 973 (1619)
Q Consensus 901 ~~~~~~l~~i~s~~id~IF~~S~~L~~eAiv~FV~ALc~vS~eEl~s~-----~~Pr~--FsLqKLvEVa~~Nm~Rirl~ 973 (1619)
..+. .+.+.-.+.+|.++++++..+....++||.++|.+-+... ..-|. +-++-.+-.+..|--|-..
T Consensus 718 ynd~----~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq~- 792 (1610)
T KOG1848|consen 718 YNDD----LLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKELSNQF- 792 (1610)
T ss_pred HHHH----HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHhhhHH-
Confidence 1111 1222347899999999999999999999999998754311 11222 2223222233333222222
Q ss_pred hhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHH-HHH-hhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHH
Q 000357 974 WSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQL-AMK-FLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCIS 1051 (1619)
Q Consensus 974 W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQL-s~k-fLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~ 1051 (1619)
-|....+||.+.+||--.++.. -+++-++. +.+ .-.+.+ -++.-|.+++-..+.....++..|+|---++||-
T Consensus 793 ---~~~naa~~l~t~~n~vl~s~~~-~~asals~da~~dv~sk~t-i~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~ 867 (1610)
T KOG1848|consen 793 ---KIINAAPELRTRANNVLASILV-DVASALSNDASPDVYSKQT-IFFESLGMLLPSLEVSDNSSRGVEVRISSLEALV 867 (1610)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHHh-hhhhhhhcccccchhccce-eeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHH
Confidence 3455566676666654222211 12222221 000 000111 1222234455555555556778899999999999
Q ss_pred HHHHhhccccccCcHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCcc
Q 000357 1052 QMVLSRVSNVKSGWKSVFSIFTAAAA---DERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSD 1128 (1619)
Q Consensus 1052 qmI~~~~~~IkSGWk~IF~iL~~aa~---d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~n 1128 (1619)
.++++.|+.+-+||..||++++.++. +++.++|++||+++++|++||++.+| .+|+.+||+++..|++|+.|+|
T Consensus 868 silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lidtl~~fs~QktdlN 944 (1610)
T KOG1848|consen 868 SILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLIDTLLVFSRQKTDLN 944 (1610)
T ss_pred HHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999997764 35789999999999999999999999 6999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcc--cCCCCcccchhhHHHHHHHHhhhccCChHHHHHH
Q 000357 1129 VCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDL--QSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKS 1206 (1619)
Q Consensus 1129 iSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ 1206 (1619)
|||+||++||.++|+++.......+ ++.... ..++. ....+...++.+|+.||..|+++|.|+|+|||++
T Consensus 945 ISltAi~lfWtvsDfl~~km~S~se----d~~~~~----~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRng 1016 (1610)
T KOG1848|consen 945 ISLTAIGLFWTVSDFLKNKMFSTSE----DSCAYN----SVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNG 1016 (1610)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccch----hhhhhc----chhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhh
Confidence 9999999999999999863211111 111011 01111 1112334578999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHH
Q 000357 1207 SLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFI 1286 (1619)
Q Consensus 1207 ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~ 1286 (1619)
|.||||+|+.+||+.|++..|+.|||.|++|+++..+... .+++ +..+.+++|. ||+++++.|++++|.
T Consensus 1017 Avqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ew------ngkeiqkqwt-et~~ltisgIaklf~ 1085 (1610)
T KOG1848|consen 1017 AVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEW------NGKEIQKQWT-ETSCLTISGIAKLFS 1085 (1610)
T ss_pred HHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhh------cchhHhhhhh-hhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999876422 1111 1234458996 999999999999999
Q ss_pred HHhchhh------hhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHh
Q 000357 1287 CFFDVVR------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1328 (1619)
Q Consensus 1287 ~yf~~l~------~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~ 1328 (1619)
.||..+. ..|..+|++|.+.++..+.+++-.++.|||.++..
T Consensus 1086 e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1086 ENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 9998765 35999999999999999999999999999999984
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=100.00 E-value=1.1e-33 Score=306.08 Aligned_cols=162 Identities=41% Similarity=0.667 Sum_probs=151.1
Q ss_pred cchhhhHHHHHHHHHhhccCCCCCCCCcc--hhhhhhhHHHHHHHHHHHHcCCcccc---CcHHHHHHHHHHHHHHHHHh
Q 000357 190 SKIREDGFLLFKNICKLSMKFSSQENPDD--LILLRGKILSLELLKVVTDNGGPVWL---SNARFLIAIKQFLCLSLLKN 264 (1619)
Q Consensus 190 ~~~~~Daflvfr~lckLs~k~~~~~~~~d--~~~~rsk~lsL~Ll~~iLe~~g~~f~---~~~~~~~~ik~~Lc~sL~~n 264 (1619)
+.+++||++|||+||+|++|+.++++..+ .++.++|++|||||+++|+++|+.|. .|+.|+++||++||++|++|
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999887765444 26889999999999999999999999 55599999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHcCchhHHHHHHhcCC
Q 000357 265 SALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDC 344 (1619)
Q Consensus 265 ~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~I~l~iLe~~~~~~~~qk~~vL~~l~~l~~dp~~lvelyvNYDC 344 (1619)
+.++.+++|+.+++||++|+.+||++||.|+|+||+.|+++++++++ ++++||+++||+++++|++|++++|+|+||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDN-SSLWQKELALEILRELCKDPQFLVDLFVNYDC 160 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHhChhHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999874 47789999999999999999999999999999
Q ss_pred CCCCccHH
Q 000357 345 DVDSPNIF 352 (1619)
Q Consensus 345 d~~~~Nif 352 (1619)
|.+++|||
T Consensus 161 d~~~~nif 168 (168)
T PF12783_consen 161 DLNSKNIF 168 (168)
T ss_pred CCCCCCCC
Confidence 99999987
No 13
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-28 Score=279.89 Aligned_cols=153 Identities=36% Similarity=0.652 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCCCChhhHhhhcccchhhhHHHHHHHHhhcCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHH
Q 000357 492 PEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYC 571 (1619)
Q Consensus 492 p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~ALR~fl~~frLPgEaQ~Idri~e~Fa~~y~ 571 (1619)
...+|+=|+..++.-|..+..+||++++|..-|..+|+..|+|.||++|.|||.||+.|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCccHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 000357 572 KCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKM 644 (1619)
Q Consensus 572 ~~np~~f~~~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l 644 (1619)
+|||+.|.+.|.+++|.++|++||||||.++|-+|||.+|||.|+.|.|+|.|||.|+|..+|++|+++.+..
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklew 459 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEW 459 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996654
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.86 E-value=1.4e-22 Score=194.36 Aligned_cols=86 Identities=53% Similarity=0.921 Sum_probs=83.9
Q ss_pred HHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHH
Q 000357 1009 MKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAF 1088 (1619)
Q Consensus 1009 ~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF 1088 (1619)
||||+++||+||+||++||+||+.||.++++.+||++||+||.+||++++++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000357 1089 ETMEKI 1094 (1619)
Q Consensus 1089 ~~l~~I 1094 (1619)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=4.6 Score=51.71 Aligned_cols=432 Identities=18% Similarity=0.222 Sum_probs=227.4
Q ss_pred HHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchh-hHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Q 000357 932 AFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWS-RMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMK 1010 (1619)
Q Consensus 932 ~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~-~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~k 1010 (1619)
+.+-+||++=..+-.....+.+=.||||-|=+-. ++...|. +--+.+-+-|.+..-|+++.+|..|+.+++|..+-
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~---~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ---FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH---HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3455666553222211223455567777654332 2222222 33466777788888899999999999999986321
Q ss_pred hhchhhhhchhhhhhhHHHHHHHHh--ccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHH
Q 000357 1011 FLEREELANYNFQNEFLRPFVIIMQ--KSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAF 1088 (1619)
Q Consensus 1011 fLe~eEL~~f~FQk~fLkPFe~Im~--~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF 1088 (1619)
...-| +.-=..|| |.++. +..+++||..|=+.+.-+++.+.++|-+.-..|.+-+-.-..|.++++...|-
T Consensus 205 --~~qal--~~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 205 --QTQAL--YVHIDKFL---EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred --CcHHH--HHHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHH
Confidence 00000 00001122 33443 45579999999999999999999999999988888776666777777666665
Q ss_pred HHHHHHHhcccCCcccc-ccchHHHHHHHHHHHHcCCC-CccccHHHHHHHHHH-HHHhh-cC--Ccc--cccCCCCCCC
Q 000357 1089 ETMEKIVREYFPHITET-ESTTFTDCVKCLLTFTNSRF-NSDVCLNAIAFLRFC-AVKLA-DG--GLV--CNEKGSVDGS 1160 (1619)
Q Consensus 1089 ~~l~~I~~d~~~~l~~~-~~~~f~d~I~cL~~F~~~~~-d~niSL~AI~~L~~~-~~~L~-~~--~l~--~~~~~~~~~~ 1160 (1619)
+..-.+...- ++.+ -.....++|-.|.. ...+ +.++. +|.+. -|... ++ .++ .. +.+..+.
T Consensus 278 EFwla~aeqp---i~~~~L~p~l~kliPvLl~--~M~Ysd~D~~-----LL~~~eeD~~vpDreeDIkPRfh-ksk~~~~ 346 (885)
T KOG2023|consen 278 EFWLALAEQP---ICKEVLQPYLDKLIPVLLS--GMVYSDDDII-----LLKNNEEDESVPDREEDIKPRFH-KSKEHGN 346 (885)
T ss_pred HHHHHHhcCc---CcHHHHHHHHHHHHHHHHc--cCccccccHH-----HhcCccccccCCchhhhccchhh-hchhccC
Confidence 5544443322 1100 01122233333322 1111 11121 11100 00000 00 000 00 0000000
Q ss_pred CCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhh
Q 000357 1161 SSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFN 1240 (1619)
Q Consensus 1161 ~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd 1240 (1619)
... . +...+...-.|+++...-|= |. .-...||.+|-+++. +.+.. ++||++.
T Consensus 347 ~~~-~-~~eDdddDe~DDdD~~~dWN-----LR--------kCSAAaLDVLanvf~-----------~elL~-~l~PlLk 399 (885)
T KOG2023|consen 347 GED-A-DDEDDDDDEDDDDDAFSDWN-----LR--------KCSAAALDVLANVFG-----------DELLP-ILLPLLK 399 (885)
T ss_pred ccc-c-cccccccccccccccccccc-----Hh--------hccHHHHHHHHHhhH-----------HHHHH-HHHHHHH
Confidence 000 0 00000001112222333341 11 122356666655443 33443 6789888
Q ss_pred hccccCCCCCCCCCCCCCCCCCCccccccH-HHhHHHHHHHHHHHHHH----Hhch--------hh--------------
Q 000357 1241 GVCDKKDMPDKDEPDSPTSHSPLSEGSTWD-SETAAIGAECLVDIFIC----FFDV--------VR-------------- 1293 (1619)
Q Consensus 1241 ~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl-~eT~~~AL~~lv~LF~~----yf~~--------l~-------------- 1293 (1619)
.... + ..|. .|..++|+..+.+==-+ |+.. +.
T Consensus 400 ~~L~------------------~---~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 400 EHLS------------------S---EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHcC------------------c---chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 7654 1 2363 57778888776543222 2211 10
Q ss_pred -------------hhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcchhhHHhh
Q 000357 1294 -------------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVL 1360 (1619)
Q Consensus 1294 -------------~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~i~~~l~~~f~~T~p~~~~~~ 1360 (1619)
..+..+|.=|.+++-..|+.+-.+||++|-.+.+..|+.+-+ ..+.|.+.|..+|..-...-+.++
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ~KNLlIL 537 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP-YLEYILDQLVFAFGKYQKKNLLIL 537 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHhhcceehH
Confidence 134566666677777899999999999999999999998877 888999999888876544322111
Q ss_pred cccCccccCCCCCCccccccCCCCCCCCCCcchhhhhhhhhHHHhhhhhHH-HHHH---HHHHHHHHHHHHhccCCHHHH
Q 000357 1361 RTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHIT-LQLL---SVQVAANLYKLHLRLLSTTNV 1436 (1619)
Q Consensus 1361 ~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cv-lQLl---LIq~v~el~~~~~~~l~~~~l 1436 (1619)
. |.+.+..-.+....++=+ +|+| |||.+..|=+ +-+.+
T Consensus 538 Y--------------------------------DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd------~DKdL 579 (885)
T KOG2023|consen 538 Y--------------------------------DAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD------SDKDL 579 (885)
T ss_pred H--------------------------------HHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc------ccchH
Confidence 1 001111111111222222 6665 6776655433 34568
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000357 1437 KILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRD 1494 (1619)
Q Consensus 1437 ~~Ll~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iLf~ 1494 (1619)
.-|++||..... .|. .||+.- .+ .-|+.+++|+.+
T Consensus 580 fPLLEClSsia~-------------AL~-~gF~P~--~~-------~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 580 FPLLECLSSIAS-------------ALG-VGFLPY--AQ-------PVYQRCFRILQK 614 (885)
T ss_pred HHHHHHHHHHHH-------------HHh-cccccc--CH-------HHHHHHHHHHHH
Confidence 889999988763 233 788876 23 346777777763
No 16
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.08 E-value=1.4 Score=63.52 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=103.0
Q ss_pred cchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHH-HhhHhhhhhccccCCCCCCCCCCCCC
Q 000357 1180 DNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYS-HVIFPIFNGVCDKKDMPDKDEPDSPT 1258 (1619)
Q Consensus 1180 ~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~-~VLfPifd~l~~~~~~~~~~~~~~~~ 1258 (1619)
.|..+|-.+-.-|..+...+..+|+--|+..|-++-..+-. ..+.+..=|+ ..|-|+-..+....
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~im~~s~------------ 1195 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSN------------ 1195 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHHHHHhcC------------
Confidence 57789988888888886666688999999987665443322 1122333344 34555554454310
Q ss_pred CCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCC---H
Q 000357 1259 SHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLS---Q 1335 (1619)
Q Consensus 1259 ~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~---~ 1335 (1619)
+ .+-+-+.++.+..+...+.+.+..=|+.++.+|..-...+++.|.+.|..+++.++...-+.++ .
T Consensus 1196 ----~-------~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~ 1264 (1780)
T PLN03076 1196 ----A-------VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETET 1264 (1780)
T ss_pred ----c-------hHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 1 2555567777777777778888888999999999988899999999999999988876544444 4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 000357 1336 DEWREILLALKETTAST 1352 (1619)
Q Consensus 1336 ~~W~~i~~~l~~~f~~T 1352 (1619)
+.-..++++|.+-.+..
T Consensus 1265 ~~F~DlV~cL~~Fa~q~ 1281 (1780)
T PLN03076 1265 TTFTDCVNCLIAFTNSR 1281 (1780)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 66667777776555443
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=25 Score=48.14 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=96.9
Q ss_pred hHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000357 1184 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPL 1263 (1619)
Q Consensus 1184 lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~ 1263 (1619)
-|=-||.-|-..+.++.+..|..|+-+|+.+....|..+.+. -..+.|+|..-...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~------~~~l~~lf~q~~~d------------------ 170 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH------LDDLLRLFSQTMTD------------------ 170 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh------HHHHHHHHHHhccC------------------
Confidence 588889999999999999999999999999999999999762 22456777654321
Q ss_pred ccccccHHHhHHHHHHHHHHHH---HHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000357 1264 SEGSTWDSETAAIGAECLVDIF---ICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1340 (1619)
Q Consensus 1264 ~e~~~Wl~eT~~~AL~~lv~LF---~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~ 1340 (1619)
.... ...+..+|+..++..- +.-.+.+..+++.++..+..+++.+++.-|.....+|-.|+....+-| ..+...
T Consensus 171 ~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~~ 247 (1075)
T KOG2171|consen 171 PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLSQ 247 (1075)
T ss_pred Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHHH
Confidence 1111 2445555555555433 222344567899999999999999999989888999888887654444 344444
Q ss_pred HHHHHHHHH
Q 000357 1341 ILLALKETT 1349 (1619)
Q Consensus 1341 i~~~l~~~f 1349 (1619)
|+..--.++
T Consensus 248 ii~~~l~Ia 256 (1075)
T KOG2171|consen 248 IIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHh
Confidence 444443333
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.86 E-value=34 Score=43.95 Aligned_cols=293 Identities=16% Similarity=0.206 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhccccc--ccch-hhHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 000357 928 EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRI--RLVW-SRMWNVLSDFFVSVGLSENLSVAIFVMDSL 1004 (1619)
Q Consensus 928 eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Ri--rl~W-~~IW~vL~~hf~~vgch~n~~Va~~AiDsL 1004 (1619)
..+..+++.||++- ..|.-|...+++.+... ..+. .... ..+-+.+.+.+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44666777777653 12344555555555431 1111 1111 223333433333 56677888777665
Q ss_pred HHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHH
Q 000357 1005 RQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIV 1084 (1619)
Q Consensus 1005 rQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV 1084 (1619)
..+ ....+ .-..+..|+..++. +.+..+|-.+++++.++...+...+. ....++..+ ..+++..+.
T Consensus 256 ~~l----~~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l---~~~~d~~Ir 321 (526)
T PF01602_consen 256 IKL----SPSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFL---LYDDDPSIR 321 (526)
T ss_dssp HHH----SSSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHH---HCSSSHHHH
T ss_pred HHh----hcchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhhee---cCCCChhHH
Confidence 533 11111 23456677777776 77889999999999999988766666 444443333 235668899
Q ss_pred HHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC
Q 000357 1085 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPP 1164 (1619)
Q Consensus 1085 ~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p 1164 (1619)
..+.+++..++++ .++..++..|..|+....+.++.-.++..+..|+......
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------- 374 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------- 374 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----------------
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----------------
Confidence 9999999877754 5778899999999854434556666666666665544210
Q ss_pred CCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccc
Q 000357 1165 VNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCD 1244 (1619)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~ 1244 (1619)
.-|+ +..+-++.......|+..+++.+.+++..+...- ..+ +.-+++.+..
T Consensus 375 ------------------~~~~--v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~~~----l~~L~~~l~~ 425 (526)
T PF01602_consen 375 ------------------AEWY--VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----EKI----LKKLIELLED 425 (526)
T ss_dssp ------------------HHHH--HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----HHH----HHHHHHHHTS
T ss_pred ------------------HHHH--HHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----HHH----HHHHHHHHHH
Confidence 1122 2334444434445678888888888887653321 122 2223333322
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHhcccCCCCchhHHHHHHH
Q 000357 1245 KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS--QLPGVVSILTGFIRSPIQGPASTGVAAL 1322 (1619)
Q Consensus 1245 ~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~--ll~~lL~lL~~~I~q~~~~ia~ig~~cL 1322 (1619)
.. + .+ +++.++-++..|-+.... ....++..+......++..+-.....++
T Consensus 426 ~~----------------~-------~~----~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~ 478 (526)
T PF01602_consen 426 IS----------------S-------PE----ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTAL 478 (526)
T ss_dssp SS----------------S-------HH----HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred hh----------------H-------HH----HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 00 0 12 233444444455444433 4666666666666666666666666666
Q ss_pred HHHHHhh
Q 000357 1323 LHLAGEL 1329 (1619)
Q Consensus 1323 ~~Li~~~ 1329 (1619)
-.+....
T Consensus 479 ~Kl~~~~ 485 (526)
T PF01602_consen 479 AKLFKRN 485 (526)
T ss_dssp HHHHHHS
T ss_pred HHHHhhC
Confidence 6666543
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.79 E-value=60 Score=41.72 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHH
Q 000357 952 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 1031 (1619)
Q Consensus 952 r~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe 1031 (1619)
.-+.+.||+-++...+. -..+...-.+.+.+.+--.|+|+.++-.|+..|-.++ ..|+. ..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~-----~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMA-----EPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchh-----hHHHHHHH
Confidence 45667777766554332 2344455667777777777899998888877766653 23322 34455555
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 000357 1032 IIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKI 1094 (1619)
Q Consensus 1032 ~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I 1094 (1619)
.++. ++++-||...+-|+.++.....+.+..+| +..+.....|+++.++..|...+..|
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 5554 66789999999999999999888776664 55666666778888888888888877
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=86 Score=43.38 Aligned_cols=211 Identities=17% Similarity=0.213 Sum_probs=122.5
Q ss_pred hHHHHHh-cccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhccCCc
Q 000357 915 LNHVFAH-SQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSEN 993 (1619)
Q Consensus 915 id~IF~~-S~~L~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch~n 993 (1619)
..|+++. -.+|+.+.-...-..|...-..|-..+ =|-=.-+-+.||+..-.+- .| .-+.+++.++..++|
T Consensus 61 ~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~--vr~k~~dviAeia~~~l~e---~W----Pell~~L~q~~~S~~ 131 (1075)
T KOG2171|consen 61 LRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPS--VRHKLADVIAEIARNDLPE---KW----PELLQFLFQSTKSPN 131 (1075)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHhcccc---ch----HHHHHHHHHHhcCCC
Confidence 3444433 366666655555555554443332210 0111112233444433222 45 556677777888889
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc------cccccCcHH
Q 000357 994 LSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV------SNVKSGWKS 1067 (1619)
Q Consensus 994 ~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~------~~IkSGWk~ 1067 (1619)
...+..|+-.|..+..-|-+.. . .+=.+|+.=|..-|....+. ||-.-++.+..++.-.. +..+.-=+.
T Consensus 132 ~~~rE~al~il~s~~~~~~~~~--~--~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~ 206 (1075)
T KOG2171|consen 132 PSLRESALLILSSLPETFGNTL--Q--PHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPS 206 (1075)
T ss_pred cchhHHHHHHHHhhhhhhcccc--c--hhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHH
Confidence 9888888877777644333221 1 11236777777777777777 99999999999887654 223344456
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCC-CCccccHHHHHHHHHHHHH
Q 000357 1068 VFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSR-FNSDVCLNAIAFLRFCAVK 1143 (1619)
Q Consensus 1068 IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~-~d~niSL~AI~~L~~~~~~ 1143 (1619)
++.++.....+.+......+|+.+.-+....-..+ .+.+.+.|..-.+.++++ .+..+--.|++++-.++.+
T Consensus 207 ~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l----~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 207 LLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL----RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH----HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 78888877777777778888988865553322222 245555555555555443 3444556777777666554
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=90.50 E-value=81 Score=42.73 Aligned_cols=129 Identities=16% Similarity=0.301 Sum_probs=97.0
Q ss_pred Hhhhc-cCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhh-hhccccCCCCCCCCCCCCCCCCCCcccccc
Q 000357 1192 LSKLT-SDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIF-NGVCDKKDMPDKDEPDSPTSHSPLSEGSTW 1269 (1619)
Q Consensus 1192 Ls~l~-~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPif-d~l~~~~~~~~~~~~~~~~~~s~~~e~~~W 1269 (1619)
+.++. +|.+.|||.+||..+=.++...|+.++.+ ...+ +|+| +.++.
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e-----L~~~-L~il~eRl~n------------------------- 622 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE-----LPRT-LPILLERLGN------------------------- 622 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHH-HHHHHHHHhc-------------------------
Confidence 44443 78899999999999999999998655442 1223 3443 44433
Q ss_pred HHHhHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 000357 1270 DSETAAIGAECLVDIFICFFD-VVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKET 1348 (1619)
Q Consensus 1270 l~eT~~~AL~~lv~LF~~yf~-~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~i~~~l~~~ 1348 (1619)
.-|+.-|.+.++.++..=.+ .+.+.+..++..+..+++..++.+-......+..|+..-+..++.+..+.+..-+-.+
T Consensus 623 -EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~L 701 (1233)
T KOG1824|consen 623 -EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPL 701 (1233)
T ss_pred -hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Confidence 35788888888888776544 2456788888888888888888888888999999999999999999988887766555
Q ss_pred Hhhc
Q 000357 1349 TAST 1352 (1619)
Q Consensus 1349 f~~T 1352 (1619)
...|
T Consensus 702 ises 705 (1233)
T KOG1824|consen 702 ISES 705 (1233)
T ss_pred hhHH
Confidence 5444
No 22
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=1e+02 Score=43.37 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=107.5
Q ss_pred CccchhhhHHHHHHHHHhhccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHH--HHHHHHHHHHHHHhc
Q 000357 188 GESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFL--IAIKQFLCLSLLKNS 265 (1619)
Q Consensus 188 ~~~~~~~Daflvfr~lckLs~k~~~~~~~~d~~~~rsk~lsL~Ll~~iLe~~g~~f~~~~~~~--~~ik~~Lc~sL~~n~ 265 (1619)
-.+.+++|+.-.|..+|.+.....+. .-. ...--.|-.+++++.+++.+....+-.+..|. +.++...|+.+.|..
T Consensus 208 ~~~~l~~dI~~~~~~i~l~~~~~~~~-~L~-~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~ 285 (1610)
T KOG1848|consen 208 ALDPLQKDICVGFENIQLMYPAIFDQ-LLA-FIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLL 285 (1610)
T ss_pred ccchHHHhHhcchHHHHHhcccccHh-HHh-cchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHH
Confidence 34678999999999999886432211 000 11222477899999999999988888888888 788888887766544
Q ss_pred c-----------cCchHHHHHHHHHHHHHHHHH-----HHhhHH-----------------------HHHHHHHHHHHHH
Q 000357 266 A-----------LSVMAVFQLQCSIFMSLLSKY-----RSGLKA-----------------------EIGIFFPMLVLRV 306 (1619)
Q Consensus 266 ~-----------S~~~~vf~lsl~If~~L~~~~-----r~~LK~-----------------------Eievfl~~I~l~i 306 (1619)
. ++....-++.++++..++.++ ...++. +.++|+...+...
T Consensus 286 ~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~ 365 (1610)
T KOG1848|consen 286 LRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFD 365 (1610)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhh
Confidence 3 111111222233333333311 001111 1123333221111
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHcCchhHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 000357 307 LENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTA 363 (1619)
Q Consensus 307 Le~~~~~~~~qk~~vL~~l~~l~~dp~~lvelyvNYDCd~~~~NifE~lv~~Lsk~a 363 (1619)
. ..+.-+|+..+++++.++|.++..+..++.|+||++.+.++++..+-.++.++
T Consensus 366 --s-~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~v 419 (1610)
T KOG1848|consen 366 --S-MDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFV 419 (1610)
T ss_pred --h-cCcccCccHhHHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhH
Confidence 0 12334678889999999999999999999999999999998888776666554
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.84 E-value=1.4e+02 Score=38.11 Aligned_cols=276 Identities=16% Similarity=0.207 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhhchhhh-hchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHH
Q 000357 976 RMWNVLSDFFVSVGLSE-NLSVAIFVMDSLRQLAMKFLEREEL-ANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQM 1053 (1619)
Q Consensus 976 ~IW~vL~~hf~~vgch~-n~~Va~~AiDsLrQLs~kfLe~eEL-~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qm 1053 (1619)
.+-++|...+..++-+| |+...-|..+++-- .+|+.....- .--.|-..++-||..|++..- .|.-.-|.+-+.+|
T Consensus 67 ~il~~L~~il~~v~kNPsnP~FnHylFEsi~~-lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~L 144 (435)
T PF03378_consen 67 EILQHLTAILKEVSKNPSNPRFNHYLFESIGA-LIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQL 144 (435)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHHHHH-HHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH-HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455556666666544 77777777777774 3566532111 112466778899999887554 36666788889999
Q ss_pred HHhhc-cccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHH
Q 000357 1054 VLSRV-SNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLN 1132 (1619)
Q Consensus 1054 I~~~~-~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~ 1132 (1619)
++.+. ..+-.-...+|..|-...--+...-|.---..++.+++..-..+.. .+...-+....-+-..++. -...
T Consensus 145 le~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~--~~~l~~iLgvFQkLi~sk~---~D~~ 219 (435)
T PF03378_consen 145 LELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVA--NNQLEPILGVFQKLIASKA---NDHY 219 (435)
T ss_dssp HHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHHHHHT-TT---CHHH
T ss_pred HHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcc--hhhHHHHHHHHHHHHCCCC---cchH
Confidence 99987 6666667777777766543222222222222333333322222210 1222333333323333322 1123
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHH
Q 000357 1133 AIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLF 1212 (1619)
Q Consensus 1133 AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF 1212 (1619)
+.++|..+..++....+ ..-...+|..+|..|..-=+ ....++=+..+.
T Consensus 220 gF~LL~~iv~~~p~~~l----------------------------~~yl~~I~~lll~RLq~skT---~kf~~~fv~F~~ 268 (435)
T PF03378_consen 220 GFDLLESIVENLPPEAL----------------------------EPYLKQIFTLLLTRLQSSKT---EKFVKRFVVFLS 268 (435)
T ss_dssp HHHHHHHHHHHS-HHHH----------------------------GGGHHHHHHHHHHHHHHC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHH----------------------------HHHHHHHHHHHHHHHhhCCc---HHHHHHHHHHHH
Confidence 44555544443321000 01133577777777765211 222222222222
Q ss_pred HHHHhcCC--------CCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHH
Q 000357 1213 NILKDHGH--------LFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDI 1284 (1619)
Q Consensus 1213 ~iL~~~G~--------~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~L 1284 (1619)
-+...||. ..-+..|..++.+++.|-.+.+... .-...+.=|++++
T Consensus 269 ~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------------------------~erKi~~vGltkL 322 (435)
T PF03378_consen 269 LFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------------------------IERKICAVGLTKL 322 (435)
T ss_dssp HHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH--------------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc--------------------------chhhHHHHHHHHH
Confidence 22223332 2245678899999998977766431 1123333344554
Q ss_pred HHH---HhchhhhhHHHHHHHHHhcccCCCCchh
Q 000357 1285 FIC---FFDVVRSQLPGVVSILTGFIRSPIQGPA 1315 (1619)
Q Consensus 1285 F~~---yf~~l~~ll~~lL~lL~~~I~q~~~~ia 1315 (1619)
... +.+....+|..+++-+...+..+.+.-+
T Consensus 323 L~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~ 356 (435)
T PF03378_consen 323 LCESPAFLSEYSQLWPPLLEALLKLLERPPEASA 356 (435)
T ss_dssp HHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S
T ss_pred HhccHhhhhHHHHHHHHHHHHHHHHHcCCccccc
Confidence 432 3333345788888877777776654433
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.28 E-value=55 Score=38.73 Aligned_cols=159 Identities=17% Similarity=0.268 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHHHHhhcccccc-CcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHH
Q 000357 1039 SAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCL 1117 (1619)
Q Consensus 1039 ~~eIre~IL~cl~qmI~~~~~~IkS-GWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL 1117 (1619)
....|-.+.+-+..+++.+...+++ |=..|.+++..+..+++|..+..+|+.+..|++.|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 3568999999999999998888754 667888999999999999999999999998887753 22 3334444444
Q ss_pred HHH-----HcCCCCc-cccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHH
Q 000357 1118 LTF-----TNSRFNS-DVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTG 1191 (1619)
Q Consensus 1118 ~~F-----~~~~~d~-niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1191 (1619)
..| .-.+.|+ .|+-.- +-..+-..+. ....+..+=+|+|..
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~ed--Lk~~L~~cl~-------------------------------s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITRED--LKRALRNCLS-------------------------------STPLFAPFAFPLLLE 215 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHH--HHHHHHHHhc-------------------------------CcHhhHHHHHHHHHH
Confidence 332 1111111 222221 1111111111 111233344554432
Q ss_pred HhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhh
Q 000357 1192 LSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIF 1239 (1619)
Q Consensus 1192 Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPif 1239 (1619)
++..+ -+.|+.-+++||-.++..||..==.+.|..+|+.+=+-++
T Consensus 216 --KL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Eil 260 (262)
T PF14500_consen 216 --KLDST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEIL 260 (262)
T ss_pred --HHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 33323 3459999999999999999966446678887776544333
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.96 E-value=84 Score=35.73 Aligned_cols=178 Identities=16% Similarity=0.121 Sum_probs=100.3
Q ss_pred cchHHHHHHHHhhcccccccchhhHHHHHH---HHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHH
Q 000357 953 VFSLTKLVEIAHYNMNRIRLVWSRMWNVLS---DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRP 1029 (1619)
Q Consensus 953 ~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~---~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkP 1029 (1619)
.=.|++|-.++..| ........+++.+. .-+.......+..|+..|+..+..++..+-.. +.. +-..++.+
T Consensus 25 ~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~--~~~~~l~~ 98 (228)
T PF12348_consen 25 VEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEP--YADILLPP 98 (228)
T ss_dssp HHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHHH
Confidence 34477777777776 22233345555555 33434333446678999999888887654322 222 12334444
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccc---CCccccc
Q 000357 1030 FVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITETE 1106 (1619)
Q Consensus 1030 Fe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~---~~l~~~~ 1106 (1619)
+.... ......|++...+|+..|++... .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+. .
T Consensus 99 Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~--~ 171 (228)
T PF12348_consen 99 LLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ--K 171 (228)
T ss_dssp HHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----
T ss_pred HHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc--c
Confidence 33322 23356799999999999998655 1226669999999999998888888898888887664 2222 1
Q ss_pred cchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHh
Q 000357 1107 STTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKL 1144 (1619)
Q Consensus 1107 ~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L 1144 (1619)
...+..++.++..+.... ++++=-.|-..+|......
T Consensus 172 ~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHC
Confidence 223578888888887543 3455556666666554443
No 26
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.65 E-value=32 Score=44.06 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=77.5
Q ss_pred cccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHH--HHhccCCchhHHHH
Q 000357 922 SQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFF--VSVGLSENLSVAIF 999 (1619)
Q Consensus 922 S~~L~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf--~~vgch~n~~Va~~ 999 (1619)
-..++.+++..+|..||..-.-. .+.+-.==+..|+-|-+..- ..-..|.+.+ ..-.-.++..+..=
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~----------~l~~~~w~~m~nL~~S~~g~-~~i~~L~~iL~~~~~~~~~~~~~lRG 275 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV----------SLCKPSWRTMRNLLKSHLGH-SAIRTLCDILRSPDPQNKRDINVLRG 275 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc----------ccchhHHHHHHHHHcCccHH-HHHHHHHHHHcccCccccccHHHHhh
Confidence 47889999999999999862111 11111111223332222111 1112233333 11222346667778
Q ss_pred HHHHHHHHHHHhhchhhhhchhhhh-hhHHHHHHHHhccCChHHHHHHHHHHHHHH-Hhhcccc-ccCcHHHHHHHHHh
Q 000357 1000 VMDSLRQLAMKFLEREELANYNFQN-EFLRPFVIIMQKSGSAEIRELIIRCISQMV-LSRVSNV-KSGWKSVFSIFTAA 1075 (1619)
Q Consensus 1000 AiDsLrQLs~kfLe~eEL~~f~FQk-~fLkPFe~Im~~s~~~eIre~IL~cl~qmI-~~~~~~I-kSGWk~IF~iL~~a 1075 (1619)
||..|+.+..+.- ....+.-.|-- -+|..|...|..... -|---|+.++..++ ...+..+ ...|..++.++...
T Consensus 276 Av~~l~~ll~~~~-~~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~ 352 (464)
T PF11864_consen 276 AVFFLRMLLWGSG-EQGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEI 352 (464)
T ss_pred HHHHHHHHHhccc-cCCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHH
Confidence 8888888755541 12222222221 366667777764432 23335677777888 6666664 55999999999864
No 27
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=75.95 E-value=25 Score=38.85 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHH
Q 000357 993 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIF 1072 (1619)
Q Consensus 993 n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL 1072 (1619)
|+.|+.-|+-+|.+|+.+|-..-|- + -|...-+-+.+++.||...+.|+.+++....-.++. ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--------~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--------Y-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--------H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHH
Confidence 4568888899999999887544330 1 122222334668999999999999999764433332 1123444
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHH
Q 000357 1073 TAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLT 1119 (1619)
Q Consensus 1073 ~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~ 1119 (1619)
. +-.|+++.|...|=..+..+....-+... .+.|.+||.-|..
T Consensus 70 ~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 K-LLVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLNN 112 (178)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhC
Confidence 4 44788999999998888888766433332 3455555544433
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=71.91 E-value=54 Score=37.33 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000357 221 LLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFP 300 (1619)
Q Consensus 221 ~~rsk~lsL~Ll~~iLe~~g~~f~~~~~~~~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~ 300 (1619)
....++=+|.-|..++..+. --...+.+...+| .+...+.+...+....|...+|.++..|+..++.+++..++.+++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNA-PEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B------HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 45567889999999999882 2233467888888 555667776666678899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHcC
Q 000357 301 MLVLRVLENVLQPSFVQKMTVLNLLEKISQD 331 (1619)
Q Consensus 301 ~I~l~iLe~~~~~~~~qk~~vL~~l~~l~~d 331 (1619)
.++.++-+++ -.-+..+.++|..++..
T Consensus 98 ~Ll~~~~~~~----~~i~~~a~~~L~~i~~~ 124 (228)
T PF12348_consen 98 PLLKKLGDSK----KFIREAANNALDAIIES 124 (228)
T ss_dssp HHHHGGG-------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccc----HHHHHHHHHHHHHHHHH
Confidence 8865544321 11334456666666654
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.95 E-value=4.5e+02 Score=37.06 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=135.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcccc---ccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCc
Q 000357 1026 FLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNV---KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHI 1102 (1619)
Q Consensus 1026 fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~I---kSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l 1102 (1619)
.|.||.. ..+.+-.|...++.||..++.+++..- .+--..+|+++..++. +.|.+-..|-..+..|+.+-- .-
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~-~~ 172 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPP-FA 172 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCC-CC
Confidence 4455544 234567788899999999998865431 2223456777777664 567788888999988887421 11
Q ss_pred cccc-cchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccc
Q 000357 1103 TETE-STTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDN 1181 (1619)
Q Consensus 1103 ~~~~-~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1181 (1619)
+..+ +.+..-.=.||..+..--. .+..-+-+..|..+-+-+.. +
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~-~a~~t~v~~~L~Ll~~~~~~----~------------------------------ 217 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLG-SAENTTVLRSLMLLRDVLST----F------------------------------ 217 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHhhcc----C------------------------------
Confidence 1000 1122222233333332110 11111222222222222210 0
Q ss_pred hhhHHHHHHHHhh----hccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCC
Q 000357 1182 SSFWVPLLTGLSK----LTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSP 1257 (1619)
Q Consensus 1182 ~~lW~pLL~~Ls~----l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~ 1257 (1619)
=.+++..+.+ +++-..-.|+..++|+|-..+..|...++.++-..++. -+ ..+.. ..
T Consensus 218 ---p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~----al-~~l~p--s~--------- 278 (1176)
T KOG1248|consen 218 ---PRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLT----AL-MTLSP--SE--------- 278 (1176)
T ss_pred ---CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH----HH-HHhCC--Cc---------
Confidence 0244555554 44567789999999999999999888776655444332 12 22211 00
Q ss_pred CCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCC
Q 000357 1258 TSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 1331 (1619)
Q Consensus 1258 ~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~ 1331 (1619)
+...-...|+ .-++-|...+. ++.-+.--..+++++.++..|...+++++...+..|+..++.....
T Consensus 279 ---~D~~~t~~W~-~v~~~~~~~la---~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~ 345 (1176)
T KOG1248|consen 279 ---NDDLLTVAWL-KVLNEAHDILA---TLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT 345 (1176)
T ss_pred ---cchHHHHHHH-HHHHHHHHHHH---HhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc
Confidence 0011224575 33333322222 1222222345889999999999999999999999999999986655
No 30
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.94 E-value=86 Score=44.92 Aligned_cols=237 Identities=13% Similarity=0.278 Sum_probs=131.6
Q ss_pred cccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhch---hhhhchhhhhhhHHHHHHHHhccCC----h
Q 000357 968 NRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLER---EELANYNFQNEFLRPFVIIMQKSGS----A 1040 (1619)
Q Consensus 968 ~Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~---eEL~~f~FQk~fLkPFe~Im~~s~~----~ 1040 (1619)
+.++-.|.+|+.+ |..++--.+..+...+.+.+-++.....+. .|.. .| .|-++.|+..+.+... .
T Consensus 1063 ~nikSGWk~if~i----~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKI----FTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHH----HHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 5788999888777 455666667778777776665443333321 1111 12 2456777776654321 1
Q ss_pred HHHHHHHHHHHHHHHh-hcccc-----------ccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccc
Q 000357 1041 EIRELIIRCISQMVLS-RVSNV-----------KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETEST 1108 (1619)
Q Consensus 1041 eIre~IL~cl~qmI~~-~~~~I-----------kSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~ 1108 (1619)
.--+.+.-|.....+. ..+.+ .+||.+++-.++.+..+....+-..+.+++-.|+.+|-+.+.. .
T Consensus 1136 ~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~---~ 1212 (1514)
T KOG0929|consen 1136 NAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSK---E 1212 (1514)
T ss_pred HHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccH---H
Confidence 2222445566655554 22333 3699999999998887666677778888888888877655431 2
Q ss_pred hHHHHHH-HHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccch--hhH
Q 000357 1109 TFTDCVK-CLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNS--SFW 1185 (1619)
Q Consensus 1109 ~f~d~I~-cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~lW 1185 (1619)
--.++.. |+-=|.+-+.+-+.+...=-+.-.|...|..- +. -++ ..+. ..-
T Consensus 1213 ~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~---v~---------------------lf~--~~~~~l~~l 1266 (1514)
T KOG0929|consen 1213 FWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQAL---VD---------------------LFT--QFFKQLNNL 1266 (1514)
T ss_pred HHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHH---HH---------------------HHH--HHHHHHHHH
Confidence 2233222 11122222222222211111111122222100 00 000 0011 112
Q ss_pred H-HHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhh
Q 000357 1186 V-PLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNG 1241 (1619)
Q Consensus 1186 ~-pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~ 1241 (1619)
+ .+|.-|..++..+...+-...+..|.+.+...|..|+...|+.+++.+ .-+|+.
T Consensus 1267 L~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~-~e~~~~ 1322 (1514)
T KOG0929|consen 1267 LPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCI-LEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHH-HHHHHh
Confidence 2 234445556666777888889999999999999999999999999843 555543
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.71 E-value=22 Score=42.65 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHhcC-CCCChhhH--HHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHH
Q 000357 1200 RSTIRKSSLEVLFNILKDHG-HLFPRQFW--MGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 1276 (1619)
Q Consensus 1200 r~eVR~~ALqtLF~iL~~~G-~~f~~~~W--~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~ 1276 (1619)
..+||..|++.+|+++..|| ..|+...+ ......-+..+|-..... . ..+....
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------------------~-----~~~~~~~ 133 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS------------------E-----NPELQAI 133 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc------------------C-----CHHHHHH
Confidence 78999999999999999999 44455444 122222233333333221 1 1357778
Q ss_pred HHHHHHHHHHH
Q 000357 1277 GAECLVDIFIC 1287 (1619)
Q Consensus 1277 AL~~lv~LF~~ 1287 (1619)
|.+|+++|+..
T Consensus 134 a~EGl~KLlL~ 144 (298)
T PF12719_consen 134 AVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHhc
Confidence 88888887755
No 32
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.55 E-value=61 Score=35.36 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhchhhcCCC---------CCCccchHHHHHHHHhhcccccc------cchhhHHHHHHHHHHHhccCCch
Q 000357 930 IVAFVKALCKVSISELQSP---------TDPRVFSLTKLVEIAHYNMNRIR------LVWSRMWNVLSDFFVSVGLSENL 994 (1619)
Q Consensus 930 iv~FV~ALc~vS~eEl~s~---------~~Pr~FsLqKLvEVa~~Nm~Rir------l~W~~IW~vL~~hf~~vgch~n~ 994 (1619)
.....+.||.++..+.... ..+|.|+|+-|-.+-..+...+. ..-.-+++.+..++.+.+++++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456788999984433221 24578999988877766665554 34446778888899999888887
Q ss_pred hHHHHHHHHHHHHHHHhhchhhhhchhhhhh-hHHHHHH-HHhccC-ChHHHHHHHHHHHHHH
Q 000357 995 SVAIFVMDSLRQLAMKFLEREELANYNFQNE-FLRPFVI-IMQKSG-SAEIRELIIRCISQMV 1054 (1619)
Q Consensus 995 ~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~-fLkPFe~-Im~~s~-~~eIre~IL~cl~qmI 1054 (1619)
.+...++..+..|..+|-. . .+.|-+ ||.-.-. ++.... ...-|+.+|+++..+.
T Consensus 88 ~i~~~slri~~~l~~~~~~--~---Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRS--H---LKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 7777777777777666543 1 122322 2222222 333332 4678888999888765
No 33
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=66.80 E-value=35 Score=36.93 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=81.6
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhcC--CCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHH
Q 000357 1194 KLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS 1271 (1619)
Q Consensus 1194 ~l~~d~r~eVR~~ALqtLF~iL~~~G--~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~ 1271 (1619)
......+.-=|+.|++-|-+++.... ..++...|..+|+ .||-.+..-+.......... .+...-...-+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~------~s~~~~~~~RL- 82 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSS------ASTATTAESRL- 82 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcc------cchHHHHHHHH-
Confidence 33445667789999999999998765 8889999999998 55777776543221000000 00000001124
Q ss_pred HhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCC-CchhHHHHH---HHHHHHH--hhCCCCCHHHHH
Q 000357 1272 ETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPI-QGPASTGVA---ALLHLAG--ELGSRLSQDEWR 1339 (1619)
Q Consensus 1272 eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~-~~ia~ig~~---cL~~Li~--~~g~~f~~~~W~ 1339 (1619)
+.+.-+++.+++.....+... -...+++.+..++..++ .-+.-+|.. +|+.++. .....++..+|.
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~k--t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRK--TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 677888888887777655432 24455555555666666 344444544 4444444 355677888885
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=60.89 E-value=28 Score=34.51 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=61.0
Q ss_pred HHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccC
Q 000357 985 FVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSG 1064 (1619)
Q Consensus 985 f~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSG 1064 (1619)
+.+.-.+.+..++..|+..|..++... ++...+-.+..++.++..++.. .+..++...+.++.++..........=
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 333334556778888888777765431 3333333455788888887765 578999999999999976543221111
Q ss_pred cHH-HHHHHHHhhccchHHHHHHHHHHHHHH
Q 000357 1065 WKS-VFSIFTAAAADERKNIVLLAFETMEKI 1094 (1619)
Q Consensus 1065 Wk~-IF~iL~~aa~d~~~~iV~~aF~~l~~I 1094 (1619)
|+. +...|-....+.+..+.+.+..++..+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 111 233333333333455555555555444
No 35
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=59.06 E-value=3.7e+02 Score=34.25 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=100.6
Q ss_pred hhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccC
Q 000357 1021 NFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFP 1100 (1619)
Q Consensus 1021 ~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~ 1100 (1619)
+|-+-++.-|| ++..+.+.-+|.+.|+.|.+|+.+....+...=.....-+--|+.|.+++++..|-+....+...|.+
T Consensus 326 ~f~~iL~~l~E-vL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 326 HFAEILLLLLE-VLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHH-HHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 45554444444 46777788899999999999999999988765554444444567778889999999888778777754
Q ss_pred CccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCccc
Q 000357 1101 HITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDD 1180 (1619)
Q Consensus 1101 ~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 1180 (1619)
. .+..-+..|+.. .|..+.+-+|..+..+...+...-+
T Consensus 405 ~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~EeL------------------------------- 442 (516)
T KOG2956|consen 405 L------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSAEEL------------------------------- 442 (516)
T ss_pred h------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCHHHH-------------------------------
Confidence 2 233333333332 3455666677666554433321000
Q ss_pred chhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC-CCCCh
Q 000357 1181 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HLFPR 1224 (1619)
Q Consensus 1181 ~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G-~~f~~ 1224 (1619)
..+---+.=++-..+......||+.|+=.|-.+...-| ..+.|
T Consensus 443 -~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 443 -LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred -HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 00000122233444556677899999999888888777 55543
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.65 E-value=3.6e+02 Score=36.22 Aligned_cols=175 Identities=14% Similarity=0.252 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCc---cccHHHHHHHHHHHHHhhcCCcccccCCCC
Q 000357 1081 KNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS---DVCLNAIAFLRFCAVKLADGGLVCNEKGSV 1157 (1619)
Q Consensus 1081 ~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~---niSL~AI~~L~~~~~~L~~~~l~~~~~~~~ 1157 (1619)
+..-..|=+++-.|..=- +| .+...++|..|..-+.+.... .-+|.||+|+- ..+....+
T Consensus 104 p~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic---e~i~pevl-------- 166 (859)
T KOG1241|consen 104 PRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC---EDIDPEVL-------- 166 (859)
T ss_pred CCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH---ccCCHHHH--------
Confidence 344455666666665432 44 578899999998877554322 34567776642 11100000
Q ss_pred CCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHh
Q 000357 1158 DGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFP 1237 (1619)
Q Consensus 1158 ~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfP 1237 (1619)
.+.....-+-+..|..+ ..+...||=.|+..|.+.|.--+..|..+.=..++-
T Consensus 167 --------------------~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM----- 219 (859)
T KOG1241|consen 167 --------------------EQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM----- 219 (859)
T ss_pred --------------------HHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee-----
Confidence 00011222333333222 345678999999999999997777775543333222
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHhcccCCCCchhH
Q 000357 1238 IFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS-QLPGVVSILTGFIRSPIQGPAS 1316 (1619)
Q Consensus 1238 ifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~-ll~~lL~lL~~~I~q~~~~ia~ 1316 (1619)
+.+...++. +| .+-+.-|++.++++..-||+.+.+ |.+.++.+-..-|.++++++|.
T Consensus 220 --qvvcEatq~---------------~d-----~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal 277 (859)
T KOG1241|consen 220 --QVVCEATQS---------------PD-----EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL 277 (859)
T ss_pred --eeeeecccC---------------Cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 223332211 12 477889999999999999998875 5677999988899999999998
Q ss_pred HHHHH
Q 000357 1317 TGVAA 1321 (1619)
Q Consensus 1317 ig~~c 1321 (1619)
-|++-
T Consensus 278 QaiEF 282 (859)
T KOG1241|consen 278 QAIEF 282 (859)
T ss_pred HHHHH
Confidence 77753
No 37
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=57.87 E-value=2e+02 Score=35.04 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=81.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHHHH-HhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCc
Q 000357 1186 VPLLTGLSKLTSDSRSTIRKSSLEVLFNIL-KDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLS 1264 (1619)
Q Consensus 1186 ~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL-~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~ 1264 (1619)
=||+.....--.+..|+.|..-+=.++.++ ...|..+. +.-..|++.|+-|.++-+....+
T Consensus 70 ~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~----------------- 131 (319)
T PF08767_consen 70 PPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFE----------------- 131 (319)
T ss_dssp HHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSS-----------------
T ss_pred HHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhh-----------------
Confidence 355553333223345667766555555444 45666554 45577788888888887754211
Q ss_pred cccccHHHhHHHHHHHHHHHHHHHhchhhh----hHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCC
Q 000357 1265 EGSTWDSETAAIGAECLVDIFICFFDVVRS----QLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 1331 (1619)
Q Consensus 1265 e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~----ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~ 1331 (1619)
+ -.+-+..=...+-.+-.++|+.+.. .+..+++.+.|.++.++.+++..|.+++..|+.....
T Consensus 132 ~----yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 132 E----YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp S----SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred h----ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 1 1355555566666666667777653 5889999999999999999999999999999996544
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=55.25 E-value=5.9e+02 Score=33.08 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=42.8
Q ss_pred HHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q 000357 985 FVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVL 1055 (1619)
Q Consensus 985 f~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~ 1055 (1619)
+..+-.+++..|+..|+..|..++..-...+.+ |...++.-+..+|.+ ++..+|-.+++++.++-.
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l----~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL----FDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH----hCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHh
Confidence 444446789999999999999987532222222 333345556666654 355788888888877643
No 39
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=55.05 E-value=2.6e+02 Score=32.77 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=84.7
Q ss_pred cchhhHHHHHHHHhhhccCC-----hHHHHHHHHH--HHHHHHHhcCCCC--ChhhHHHHHHHhhH--hhhhhccccCCC
Q 000357 1180 DNSSFWVPLLTGLSKLTSDS-----RSTIRKSSLE--VLFNILKDHGHLF--PRQFWMGVYSHVIF--PIFNGVCDKKDM 1248 (1619)
Q Consensus 1180 ~~~~lW~pLL~~Ls~l~~d~-----r~eVR~~ALq--tLF~iL~~~G~~f--~~~~W~~if~~VLf--Pifd~l~~~~~~ 1248 (1619)
.|..+|-.|+.-+.-+.+.. .+.|..-+.+ .+|+...++|+.| +|..-+.+|-+++- ++|+.+......
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~ 137 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLR 137 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhh
Confidence 58899988877666664332 2344444433 4588888999998 77788888887765 777776543222
Q ss_pred CCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH-
Q 000357 1249 PDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAG- 1327 (1619)
Q Consensus 1249 ~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~- 1327 (1619)
..+ +...+.+.+ +.....++..+..+-.||-..+. .|..-- ..=....+++..+....+..|-+
T Consensus 138 ~~~---------~~~~~~~~~-~~~~~~sl~nl~~I~~Hf~~ki~-~~~~~~----~~~~lt~~qV~~VIk~~YdtLsl~ 202 (237)
T PF08427_consen 138 SST---------SSSSEYKDS-SDKLTNSLDNLRSIISHFESKIE-EWSAAN----KKSNLTPEQVLEVIKQNYDTLSLK 202 (237)
T ss_pred ccC---------CCccccccc-hhHHHHHHHHHHHHHHHHHHHHH-HHHhhc----cCCCCCHHHHHHHHHhCccceecc
Confidence 111 011222333 35667888888888777766554 221110 12222334555555555544433
Q ss_pred -----hhCCCCCHHHHHHHH
Q 000357 1328 -----ELGSRLSQDEWREIL 1342 (1619)
Q Consensus 1328 -----~~g~~f~~~~W~~i~ 1342 (1619)
.+-+++.|..|....
T Consensus 203 ~~e~Ld~~ery~E~~~~~~~ 222 (237)
T PF08427_consen 203 LQEGLDQWERYREAPEKSFL 222 (237)
T ss_pred hhhccccccccccCchHHHH
Confidence 344566666655443
No 40
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=53.68 E-value=21 Score=27.70 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHH
Q 000357 1189 LTGLSKLTSDSRSTIRKSSLEVLFNILK 1216 (1619)
Q Consensus 1189 L~~Ls~l~~d~r~eVR~~ALqtLF~iL~ 1216 (1619)
+-.|.+++.|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445567779999999999999987765
No 41
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=52.02 E-value=2.5e+02 Score=34.26 Aligned_cols=122 Identities=12% Similarity=0.208 Sum_probs=80.3
Q ss_pred hhhhHHHHH----HHHhccCChHHHH-HHHHHHHHHHHhhccccccCcHHHHHHHHHhh-----c--cchHHHHHHHHHH
Q 000357 1023 QNEFLRPFV----IIMQKSGSAEIRE-LIIRCISQMVLSRVSNVKSGWKSVFSIFTAAA-----A--DERKNIVLLAFET 1090 (1619)
Q Consensus 1023 Qk~fLkPFe----~Im~~s~~~eIre-~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa-----~--d~~~~iV~~aF~~ 1090 (1619)
-+.|..|+. .-++++ .++.|+ .||.|+..+|..-++.+...=..||..+=.+. + .+.|+.-..=|+.
T Consensus 65 ~~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~L 143 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKL 143 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHH
Confidence 344555543 233333 333333 36788888888877777776666665332221 2 2467888888999
Q ss_pred HHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhc
Q 000357 1091 MEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLAD 1146 (1619)
Q Consensus 1091 l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~ 1146 (1619)
++.|+..+|+.+....++.|..+++|+ .++....+.+|+-.++..|..+...+..
T Consensus 144 L~~i~~~~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999887765433478999999999 4555555678999998888877766653
No 42
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=51.62 E-value=1.2e+02 Score=33.63 Aligned_cols=152 Identities=13% Similarity=0.196 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHH
Q 000357 1112 DCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTG 1191 (1619)
Q Consensus 1112 d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1191 (1619)
-+|.||.. ++++-+.+..|+.+...++...+.+ .+ .-|.-|..+
T Consensus 7 lLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~~-------------------------~~----~~W~eL~d~ 50 (174)
T PF04510_consen 7 LLISCLTM-------QETKESDFKILRRIVSHVAYEVFDL-------------------------QE----GGWDELSDC 50 (174)
T ss_pred HHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHhc-------------------------CC----CCchhHHHH
Confidence 46778866 5677677788888877776542211 11 235444455
Q ss_pred HhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHH
Q 000357 1192 LSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS 1271 (1619)
Q Consensus 1192 Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~ 1271 (1619)
+..+.... + .+|..++.++=..+ ..+|-...++. |+|-+......++ ..+ .
T Consensus 51 Ils~~~~e-~---~kA~~IF~~L~~~l----~~efl~~~~~~-L~~~~~~~L~~p~---------------~~d-----~ 101 (174)
T PF04510_consen 51 ILSLSENE-P---VKAFHIFICLPMPL----YGEFLIPFMEN-LLPEISKVLLPPE---------------EVD-----V 101 (174)
T ss_pred HHHhhccc-h---HHHHHHHHhCCchh----hhhHHHHHHHH-HHHHHHHHcCCch---------------hcc-----H
Confidence 54444211 1 45666555432122 33444555554 5666655544221 123 2
Q ss_pred HhHHHHHHHHHHHHHHHhch------hhhhHHHHHHHHHhcccCCCC-chhHHHHHHHHHHHHh
Q 000357 1272 ETAAIGAECLVDIFICFFDV------VRSQLPGVVSILTGFIRSPIQ-GPASTGVAALLHLAGE 1328 (1619)
Q Consensus 1272 eT~~~AL~~lv~LF~~yf~~------l~~ll~~lL~lL~~~I~q~~~-~ia~ig~~cL~~Li~~ 1328 (1619)
+..++|+.+.+..+.|..+. +..++..+++-+.+.+..+.+ +..+-|..-++.++..
T Consensus 102 ~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 102 EDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 44479999999999887654 334555666666777778999 9999999999888874
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=51.32 E-value=64 Score=31.89 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=66.2
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccc
Q 000357 1189 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 1268 (1619)
Q Consensus 1189 L~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~ 1268 (1619)
+..|.+++.+...++|..|+.+|..+-.. .++.+..++..-.+|.+-.+... .+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~------------------~~--- 62 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKS------------------ED--- 62 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhC------------------CC---
Confidence 34455555666789999999998887653 25667777774445555554331 11
Q ss_pred cHHHhHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHhcccCCCCchhHHHHHHHHHHH
Q 000357 1269 WDSETAAIGAECLVDIFICFFDVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLA 1326 (1619)
Q Consensus 1269 Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~-~lL~lL~~~I~q~~~~ia~ig~~cL~~Li 1326 (1619)
......|+..+..+-...-.....++. +++..|..++..++..+.+.++.+|.+|.
T Consensus 63 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 63 --EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233444444444442222122222333 46777777777778888888888887763
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=50.69 E-value=1e+02 Score=30.92 Aligned_cols=74 Identities=15% Similarity=0.316 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhc
Q 000357 1022 FQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVRE 1097 (1619)
Q Consensus 1022 FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d 1097 (1619)
+-+.+++|....+ ...+..||....+++.++.......+-.--.-||..|.....|.+++ |+.|-+.+..+++|
T Consensus 24 ~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 24 YLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 3456778865533 34568899999999999998877666567788999998888887776 67776777766543
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=49.87 E-value=8.6e+02 Score=33.36 Aligned_cols=239 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhH----HHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 000357 981 LSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFL----RPFVIIMQKSGSAEIRELIIRCISQMVLS 1056 (1619)
Q Consensus 981 L~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fL----kPFe~Im~~s~~~eIre~IL~cl~qmI~~ 1056 (1619)
+-+.+...-.|.|.+|++.|+..+-.++... +-..++..+ .|+..+ .+.++++|-.+|+.|..+++.
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-------~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRC-------SQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-------CHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHH
Q ss_pred hccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHH
Q 000357 1057 RVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAF 1136 (1619)
Q Consensus 1057 ~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~ 1136 (1619)
+..-+..- +.+|-.-..|+.. +-....+++-.++++ ++..+++.=|.+|+. ..|.++.-.||.-
T Consensus 328 ~P~lf~~~----~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane----------~Nv~~IL~EL~eYa~-d~D~ef~r~aIrA 391 (746)
T PTZ00429 328 FPNLLRTN----LDSFYVRYSDPPF-VKLEKLRLLLKLVTP----------SVAPEILKELAEYAS-GVDMVFVVEVVRA 391 (746)
T ss_pred CHHHHHHH----HHhhhcccCCcHH-HHHHHHHHHHHHcCc----------ccHHHHHHHHHHHhh-cCCHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHH
Q 000357 1137 LRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILK 1216 (1619)
Q Consensus 1137 L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~ 1216 (1619)
+-.|+.++. ...--.+..|.++..+ +.++-..++.++.+++.
T Consensus 392 Ig~lA~k~~-------------------------------------~~a~~cV~~Ll~ll~~-~~~~v~e~i~vik~Ilr 433 (746)
T PTZ00429 392 IASLAIKVD-------------------------------------SVAPDCANLLLQIVDR-RPELLPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHhCh-------------------------------------HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Q ss_pred hcCCCC------------------ChhhHHHHHHH----------hhHhhhhhccccCCCCCCCCCCCCCCCCCCccccc
Q 000357 1217 DHGHLF------------------PRQFWMGVYSH----------VIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 1268 (1619)
Q Consensus 1217 ~~G~~f------------------~~~~W~~if~~----------VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~ 1268 (1619)
.|-..+ .-..---|+.+ +|-.+++......
T Consensus 434 kyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~---------------------- 491 (746)
T PTZ00429 434 KYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHE---------------------- 491 (746)
T ss_pred HCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCC----------------------
Q ss_pred cHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhc
Q 000357 1269 WDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGF 1306 (1619)
Q Consensus 1269 Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~ 1306 (1619)
.++..+.|...+++|.++=+....++..+|..+...
T Consensus 492 --~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~ 527 (746)
T PTZ00429 492 --QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTH 527 (746)
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=49.19 E-value=7.2e+02 Score=32.30 Aligned_cols=264 Identities=13% Similarity=0.100 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcccccc-CcHHHHHH
Q 000357 993 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSI 1071 (1619)
Q Consensus 993 n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkS-GWk~IF~i 1071 (1619)
+......+++.|+.+- .-+....+ ...+ .|+....-.++++.||.+++..|..++......+.- .=..++..
T Consensus 51 ~~e~v~~~~~iL~~~l-~~~~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQVELICDILKRLL-SALSPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHHHHHHHHHHHHH-hccCHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 4445556667777642 22233332 1122 233222334678899999999999888655431110 11123444
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhccc--CCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCc
Q 000357 1072 FTAAAADERKNIVLLAFETMEKIVREYF--PHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGL 1149 (1619)
Q Consensus 1072 L~~aa~d~~~~iV~~aF~~l~~I~~d~~--~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l 1149 (1619)
+-.+-.+++.++.+.|-.++..+..... ..+.. .+. +..|.....+.. ..+-+...+++..++..
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~--~~~----~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~------ 190 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD--SNL----LSKLKSLMSQSS-DIVRCRVYELLVEIASH------ 190 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC--cch----HHHHHHHHhccC-HHHHHHHHHHHHHHHhc------
Confidence 4444456778889999999988875321 11211 111 444444443311 11222333332222110
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHH-HHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHH
Q 000357 1150 VCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWV-PLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWM 1228 (1619)
Q Consensus 1150 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~-pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~ 1228 (1619)
+.+.....|- .+|..+-+...+.+.=||-.|+++|-++-.++ +-..
T Consensus 191 ---------------------------S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~------~g~~ 237 (503)
T PF10508_consen 191 ---------------------------SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP------HGLQ 237 (503)
T ss_pred ---------------------------CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh------hHHH
Confidence 0000111110 24555555555678889999999999987732 2357
Q ss_pred HHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhccc
Q 000357 1229 GVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIR 1308 (1619)
Q Consensus 1229 ~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~ 1308 (1619)
.+.+.-+++.+..+....+. ++.... + ...-.+...+.++...-..+...++.++..+..++.
T Consensus 238 yL~~~gi~~~L~~~l~~~~~--------------dp~~~~-~--~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~ 300 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEE--------------DPRLSS-L--LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLE 300 (503)
T ss_pred HHHhCCHHHHHHHHHhcccc--------------CCcccc-h--hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhC
Confidence 77777777777666542211 110100 0 111122333444433223334456788888888888
Q ss_pred CCCCchhHHHHHHHHHHH
Q 000357 1309 SPIQGPASTGVAALLHLA 1326 (1619)
Q Consensus 1309 q~~~~ia~ig~~cL~~Li 1326 (1619)
+.+.++..+++.++-.+=
T Consensus 301 s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 301 SQDPTIREVAFDTLGQIG 318 (503)
T ss_pred CCChhHHHHHHHHHHHHh
Confidence 888888777777776553
No 47
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=47.37 E-value=99 Score=34.18 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHH
Q 000357 1200 RSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAE 1279 (1619)
Q Consensus 1200 r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~ 1279 (1619)
.+.||+.|+-+|-++...|.....+ |-. .++..++. ++ ..-+..|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~D-------------------~~-----~~VR~~al~ 47 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLRD-------------------ED-----PLVRKTALL 47 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHCC-------------------CC-----HHHHHHHHH
Confidence 3689999999999999999776655 322 22233322 11 245666777
Q ss_pred HHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHh
Q 000357 1280 CLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1328 (1619)
Q Consensus 1280 ~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~ 1328 (1619)
.+..|..+-+-.. -..++..+..|+..++++|...+..+|.++...
T Consensus 48 ~Ls~Li~~d~ik~---k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 48 VLSHLILEDMIKV---KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCceee---hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 7777765433222 233335555678899999999999999999987
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.10 E-value=1.3e+02 Score=39.38 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=84.4
Q ss_pred cchhhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH---HHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHH
Q 000357 972 LVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLA---MKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIR 1048 (1619)
Q Consensus 972 l~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLrQLs---~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~ 1048 (1619)
-.|+.+-..|.+.+. .++...-.-|++.|.+++ -.+++.+=+. ++=+-++--|-. +-+++++.||-..+.
T Consensus 124 ~~wpelLp~L~~~L~----s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--rpl~~mipkfl~-f~~h~spkiRs~A~~ 196 (885)
T KOG2023|consen 124 QHWPELLPQLCELLD----SPDYNTCEGAFGALQKICEDSAQFLDSDVLT--RPLNIMIPKFLQ-FFKHPSPKIRSHAVG 196 (885)
T ss_pred ccchhHHHHHHHHhc----CCcccccchhHHHHHHHHhhhHHHHhhhccc--CchHHhHHHHHH-HHhCCChhHHHHHHh
Confidence 467666666555544 333233333455566553 3344333220 111111111222 234668999999999
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCcc
Q 000357 1049 CISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSD 1128 (1619)
Q Consensus 1049 cl~qmI~~~~~~IkSGWk~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~n 1128 (1619)
||+|+|-.+.+.+--.=..-.+.+-+-|.|+++++-+..-..+-.+..-+.+.+.. .....|.-.. ...+..|.+
T Consensus 197 cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p----hl~~IveyML-~~tqd~dE~ 271 (885)
T KOG2023|consen 197 CVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP----HLDNIVEYML-QRTQDVDEN 271 (885)
T ss_pred hhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc----chHHHHHHHH-HHccCcchh
Confidence 99999987766654444555555555567888776666655555554433333321 1122222111 135677889
Q ss_pred ccHHHHHHHHH
Q 000357 1129 VCLNAIAFLRF 1139 (1619)
Q Consensus 1129 iSL~AI~~L~~ 1139 (1619)
++++|-++.-.
T Consensus 272 VALEACEFwla 282 (885)
T KOG2023|consen 272 VALEACEFWLA 282 (885)
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 49
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=45.21 E-value=2.3e+02 Score=35.93 Aligned_cols=113 Identities=11% Similarity=0.161 Sum_probs=73.1
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCcccc
Q 000357 1188 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 1267 (1619)
Q Consensus 1188 LL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~ 1267 (1619)
+..-|..+..+++.+-|+.|+.-|..++.. +.|+ .|+..|.++|.-+|+.+.... +
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sfs--vWeq~f~~iL~~l~EvL~d~~------------------~-- 343 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCE--GSFS--VWEQHFAEILLLLLEVLSDSE------------------D-- 343 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHc--cchh--HHHHHHHHHHHHHHHHHccch------------------h--
Confidence 334444555678999999999999999884 3454 499999999999999986521 1
Q ss_pred ccHHHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q 000357 1268 TWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAG 1327 (1619)
Q Consensus 1268 ~Wl~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~ 1327 (1619)
..-..+||+.+.++.++.=..+..--.-...-+..+-+..++++.+.+..|.-.++-
T Consensus 344 ---~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 344 ---EIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred ---hHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 244578888888877663333222111112222235566677777777766554444
No 50
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.09 E-value=7.9e+02 Score=31.58 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCC
Q 000357 1081 KNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGS 1160 (1619)
Q Consensus 1081 ~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~ 1160 (1619)
......-|+.+..+++=.+..+. .+....+|..+...|++....+.=..++.+|-.+..+ +.+
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~~i----------- 210 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYLD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---GDI----------- 210 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---CcC-----------
Confidence 34455667777777776666665 4777888888888876544332213444444332221 100
Q ss_pred CCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhh
Q 000357 1161 SSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFN 1240 (1619)
Q Consensus 1161 ~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd 1240 (1619)
| ..---+++..|..+..-. +..+.|-+++-+++++|-+ ...++ =|.+
T Consensus 211 ---P-----------------~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g-------~~~i~----~L~~ 257 (464)
T PF11864_consen 211 ---P-----------------SESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG-------HSAIR----TLCD 257 (464)
T ss_pred ---C-----------------hHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH-------HHHHH----HHHH
Confidence 0 011235666677663222 8888899999999987732 22222 2223
Q ss_pred hccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHHH----hchhhhhHHHHHHHHHhcccCCCCchhH
Q 000357 1241 GVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICF----FDVVRSQLPGVVSILTGFIRSPIQGPAS 1316 (1619)
Q Consensus 1241 ~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~y----f~~l~~ll~~lL~lL~~~I~q~~~~ia~ 1316 (1619)
.++.... +. .. ....+.=|+..+.++...+ +..+..-..-++.-|...+..++.-++.
T Consensus 258 iL~~~~~---------------~~-~~--~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~ 319 (464)
T PF11864_consen 258 ILRSPDP---------------QN-KR--DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDY 319 (464)
T ss_pred HHcccCc---------------cc-cc--cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehH
Confidence 2321100 00 00 1122223333333333333 1222222334666677777788899999
Q ss_pred HHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHHHhhcch
Q 000357 1317 TGVAALLHLA-GELGSRLSQDEWREILLALKETTASTLP 1354 (1619)
Q Consensus 1317 ig~~cL~~Li-~~~g~~f~~~~W~~i~~~l~~~f~~T~p 1354 (1619)
-...++.+++ ..-+..+.++.|+.+++.+.++++...+
T Consensus 320 eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 320 EILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 9999999999 8888899999999999998886555544
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=44.34 E-value=1.1e+03 Score=32.94 Aligned_cols=79 Identities=11% Similarity=0.245 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHhhchhh-hhchhhhhhhHHHH-----HHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHH
Q 000357 994 LSVAIFVMDSLRQLAMKFLEREE-LANYNFQNEFLRPF-----VIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKS 1067 (1619)
Q Consensus 994 ~~Va~~AiDsLrQLs~kfLe~eE-L~~f~FQk~fLkPF-----e~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~ 1067 (1619)
..|+..|+-...|+ .|++..-+ -..|.+.. +.++. ..++....+-+|||..+.|+.|+|-+.|+.++..-+.
T Consensus 534 yKisaEAL~v~~~l-vkvirpl~~~~~~d~~~-~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~ 611 (1233)
T KOG1824|consen 534 YKISAEALLVCQQL-VKVIRPLQPPSSFDASP-YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPR 611 (1233)
T ss_pred HhhhHHHHHHHHHH-HHHhcccCCCccCCCCh-hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 44566665555554 33443222 12344422 22222 2233445678999999999999999999999988888
Q ss_pred HHHHHHH
Q 000357 1068 VFSIFTA 1074 (1619)
Q Consensus 1068 IF~iL~~ 1074 (1619)
++.+|.-
T Consensus 612 ~L~il~e 618 (1233)
T KOG1824|consen 612 TLPILLE 618 (1233)
T ss_pred HHHHHHH
Confidence 8777743
No 52
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=40.84 E-value=3.2e+02 Score=32.83 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=68.2
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc
Q 000357 979 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 1058 (1619)
Q Consensus 979 ~vL~~hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~ 1058 (1619)
..+..+..-.-.|++..|+..|+.+|.-.++ +++ ++-++++.-|...+.. .+.+||-..++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~------~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL--LDK------ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCh------HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 4444445556677888999999988886553 222 2334555667676643 488999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhccchHHHHHHHHHHHH
Q 000357 1059 SNVKSGWK---------SVFSIFTAAAADERKNIVLLAFETME 1092 (1619)
Q Consensus 1059 ~~IkSGWk---------~IF~iL~~aa~d~~~~iV~~aF~~l~ 1092 (1619)
..+-..+. .+..+|.....+.++++-..|-+.+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77655443 45555555544444444444444443
No 53
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=35.53 E-value=61 Score=32.00 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCcccccc-HHHhHHHHHHHHHHHHHHHhchhhh-------hHHHHHHHHHh
Q 000357 1262 PLSEGSTW-DSETAAIGAECLVDIFICFFDVVRS-------QLPGVVSILTG 1305 (1619)
Q Consensus 1262 ~~~e~~~W-l~eT~~~AL~~lv~LF~~yf~~l~~-------ll~~lL~lL~~ 1305 (1619)
...+...| +.|....|+.|+|++|..|++..++ =..++++++..
T Consensus 12 ~r~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~ 63 (104)
T KOG1766|consen 12 PRPESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDD 63 (104)
T ss_pred CCcccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHH
Confidence 34555667 5789999999999999999987753 14455555543
No 54
>PRK09687 putative lyase; Provisional
Probab=34.93 E-value=5.2e+02 Score=30.92 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=57.8
Q ss_pred HHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCc
Q 000357 986 VSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGW 1065 (1619)
Q Consensus 986 ~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGW 1065 (1619)
.....++|..++..|++.|.||... .. . |...+..+..++.+.++.+||...+..|.++= .. . ...+
T Consensus 60 ~~ll~~~d~~vR~~A~~aLg~lg~~----~~--~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~-~--~~~~ 126 (280)
T PRK09687 60 IELCSSKNPIERDIGADILSQLGMA----KR--C---QDNVFNILNNLALEDKSACVRASAINATGHRC-KK-N--PLYS 126 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC----cc--c---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-cc-c--cccc
Confidence 3344578999999999999996321 00 0 44555666666667788999999999998651 11 1 1123
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHH
Q 000357 1066 KSVFSIFTAAAADERKNIVLLAFETM 1091 (1619)
Q Consensus 1066 k~IF~iL~~aa~d~~~~iV~~aF~~l 1091 (1619)
......+..+..|++..+-..+-..+
T Consensus 127 ~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 127 PKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 55666676666666555433333333
No 55
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.67 E-value=1.6e+02 Score=28.78 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q 000357 1271 SETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLH 1324 (1619)
Q Consensus 1271 ~eT~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~ 1324 (1619)
.+..-+.++.+..+...+.+.+..=|+-+++.|......+++.+.+.|..|++.
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 477788888888888888899998999999999999999999999999999874
No 56
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.87 E-value=4.8e+02 Score=33.87 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=120.7
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcccccc
Q 000357 984 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 1063 (1619)
Q Consensus 984 hf~~vgch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkS 1063 (1619)
.|+....+++..|+..|+-+|..++- +...+++|-...-.|.|+..++..+....+...+.-+|.++...+. =.-
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIag---ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~--P~P 230 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAG---DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN--PSP 230 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcccc---CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC--CCC
Confidence 37777788899999999999887643 3567788888888999998877766655667777788887764432 222
Q ss_pred CcHHHHHHHHHh---hccchHHHHHHHHHHHHHHHh---cccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHH
Q 000357 1064 GWKSVFSIFTAA---AADERKNIVLLAFETMEKIVR---EYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFL 1137 (1619)
Q Consensus 1064 GWk~IF~iL~~a---a~d~~~~iV~~aF~~l~~I~~---d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L 1137 (1619)
-|..|=.+|-+- -...++.+..-|.-.+..+.+ +..+.+. +.+....+|.+|..... ++-..|+..
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi--~~gvv~~LV~lL~~~~~-----~v~~PaLRa- 302 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI--DAGVVPRLVDLLGHSSP-----KVVTPALRA- 302 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH--HccchHHHHHHHcCCCc-----ccccHHHhh-
Confidence 444443333322 233445555444444443332 1122222 12344444444443221 111122211
Q ss_pred HHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcc-CChHHHHHHHHHHHHHHHH
Q 000357 1138 RFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS-DSRSTIRKSSLEVLFNILK 1216 (1619)
Q Consensus 1138 ~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-d~r~eVR~~ALqtLF~iL~ 1216 (1619)
++. ++.+ .|.....-+=..+|..|..+.. .+..-+|+.|+=++-+|-.
T Consensus 303 --iGN-IvtG----------------------------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 303 --IGN-IVTG----------------------------SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred --ccc-eeec----------------------------cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 111 1000 0000111122356677777765 4444599999999999877
Q ss_pred hcCCCCChhhHHHHHHHhhHhhhhhcccc
Q 000357 1217 DHGHLFPRQFWMGVYSHVIFPIFNGVCDK 1245 (1619)
Q Consensus 1217 ~~G~~f~~~~W~~if~~VLfPifd~l~~~ 1245 (1619)
|. ++.=+.|++.-|+|.+-.+..+
T Consensus 352 --G~---~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 352 --GN---QEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred --CC---HHHHHHHHHcccHHHHHHHHhc
Confidence 54 3346788888889988887663
No 57
>PLN03205 ATR interacting protein; Provisional
Probab=33.22 E-value=3.4e+02 Score=33.65 Aligned_cols=122 Identities=18% Similarity=0.332 Sum_probs=76.3
Q ss_pred ccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhccC-CchhHHHHHH
Q 000357 923 QRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLS-ENLSVAIFVM 1001 (1619)
Q Consensus 923 ~~L~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch-~n~~Va~~Ai 1001 (1619)
...+-+++++-+--||.+-...+-. .. .--|..+.+=..-|..|+.-.|.-=|-.|-+..++++.. ....|+..|+
T Consensus 317 G~V~lqtLlEaLLdLC~v~n~a~V~-Rs--LRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAv 393 (652)
T PLN03205 317 GFVNLKSLVEPLLDLCKAETAVLVH-RS--LRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEAL 393 (652)
T ss_pred CeeeHHHHHHHHHHHHhcCchhhhH-HH--HHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehh
Confidence 4455555555555556654443321 11 222556666677888999999999999999999998754 4556888887
Q ss_pred HHHHHHHHH---hhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHH
Q 000357 1002 DSLRQLAMK---FLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCIS 1051 (1619)
Q Consensus 1002 DsLrQLs~k---fLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~ 1051 (1619)
-...-+.|+ +.++|- |. |..++.....++++..-.-||...+.-+.
T Consensus 394 SIMnVIlmssna~~eREk---FG-~~~VfESiaQLLkkEaGl~VqKealhLLf 442 (652)
T PLN03205 394 SIMNIIVMSTDAYTARES---FV-SKEVFESISLLLRKEGGLHVRKEAIHLFY 442 (652)
T ss_pred hhhHHhhhccchhHHHHH---hc-chHHHHHHHHHHHHhccchhhHHHHHHHH
Confidence 776666554 444443 32 45666666666666655555555555443
No 58
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.96 E-value=4.7e+02 Score=28.02 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHH
Q 000357 227 LSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVL 304 (1619)
Q Consensus 227 lsL~Ll~~iLe~~g~~f~~~~~~~~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vfl~~I~l 304 (1619)
+.|++-..| |..+ .....-+.+||..|. .+.++.+.-++|.+.=.++.+...++..||. -|+++++.
T Consensus 21 ~ileicD~I--n~~~--~~~k~a~ralkkRl~-------~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 21 LNMEICDII--NETE--DGPKDAVRALKKRLN-------GNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred HHHHHHHHH--hCCC--CcHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHH
Confidence 446666555 2222 233455666666651 1346778888999999999999999999995 78888556
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHH
Q 000357 305 RVLENVLQPSFVQKMTVLNLLEKIS 329 (1619)
Q Consensus 305 ~iLe~~~~~~~~qk~~vL~~l~~l~ 329 (1619)
+++..+.+++..-|.-+|+++....
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHH
Confidence 7776443344445666788887665
No 59
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.89 E-value=2.5e+02 Score=30.23 Aligned_cols=80 Identities=11% Similarity=0.254 Sum_probs=50.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhc---hhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcH
Q 000357 990 LSENLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 1066 (1619)
Q Consensus 990 ch~n~~Va~~AiDsLrQLs~kfLe---~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk 1066 (1619)
.|+|..+..+|+..|--+ ++--. ..|.+ .++|+..+..+.....+.+|++.|++.|. .|.
T Consensus 47 ~~~n~~v~l~AL~LLe~~-vkNCG~~fh~eva----sk~Fl~eL~kl~~~~~~~~Vk~kil~li~------------~W~ 109 (144)
T cd03568 47 NHKDPNVQLRALTLLDAC-AENCGKRFHQEVA----SRDFTQELKKLINDRVHPTVKEKLREVVK------------QWA 109 (144)
T ss_pred cCCCHHHHHHHHHHHHHH-HHHCCHHHHHHHh----hHHHHHHHHHHhcccCCHHHHHHHHHHHH------------HHH
Confidence 478899999988665543 32111 12333 24677777777766688999999998886 366
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHH
Q 000357 1067 SVFSIFTAAAADERKNIVLLAFETME 1092 (1619)
Q Consensus 1067 ~IF~iL~~aa~d~~~~iV~~aF~~l~ 1092 (1619)
.-|. .+++-..+..+|+.++
T Consensus 110 ~~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 110 DEFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHhC------CCcccHHHHHHHHHHH
Confidence 5554 2333445666666554
No 60
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=29.37 E-value=5.5e+02 Score=35.33 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-CcHHHHH-HHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHH-
Q 000357 1042 IRELIIRCISQMVLSRVSNVKS-GWKSVFS-IFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL- 1118 (1619)
Q Consensus 1042 Ire~IL~cl~qmI~~~~~~IkS-GWk~IF~-iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~- 1118 (1619)
-|..+.+-+..+++.+-.+|+| |=.-.|+ ++.++.++++|.-...+|..++.|..-.|+.=+ ....+-|.+-|-.
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~--F~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGP--FTEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCc--cHHHHHHHhheeee
Confidence 4666777777888899999999 9899999 888888899999999999999999884343221 1234445555542
Q ss_pred -HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcc
Q 000357 1119 -TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS 1197 (1619)
Q Consensus 1119 -~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~ 1197 (1619)
.|.-.+.|... ...=++-..+...+. ..+.+..+-+|+|.. =..
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~al~-------------------------------stP~Fa~~~lp~LlE---KL~ 265 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRSALV-------------------------------STPSFAPFALPLLLE---KLN 265 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHHHHh-------------------------------cCccchhhHHHHHHH---Hhc
Confidence 34434333321 111111111111121 112244556665543 223
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhh
Q 000357 1198 DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFN 1240 (1619)
Q Consensus 1198 d~r~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd 1240 (1619)
++.+-+..-++++|-++...||..==-.+|...|..+=+-|++
T Consensus 266 as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 266 ASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred cccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 4556788899999999999999552223466655544333444
No 61
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=75 Score=39.02 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=28.2
Q ss_pred ccccCccCCCCCCCCCccCCcccccccccCCcccccccccCCCCCCCCCCC
Q 000357 133 ALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGG 183 (1619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1619)
+++|+.+.-|++-.+..+||||. +-..|+.-+-+++..++|+|+|.+.
T Consensus 58 gi~E~~f~~g~~g~~~~Vg~Gn~---e~~~gD~i~r~~~ggg~g~g~g~~a 105 (423)
T COG2718 58 GIDEPKFHYGRGGERHHVGPGND---EFAVGDRIERPQGGGGGGSGKGQAA 105 (423)
T ss_pred CCCcccccCCCCCcccccCCCCC---ccccCceeccCCCCCCCCCCCCCcc
Confidence 57777888888778888888885 3334444444433333334443333
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.39 E-value=1.5e+03 Score=30.96 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=63.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhhcccccc-CcHHHHHHHHHh--------------hccchHHHHHHHHHHHHHH
Q 000357 1030 FVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAA--------------AADERKNIVLLAFETMEKI 1094 (1619)
Q Consensus 1030 Fe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkS-GWk~IF~iL~~a--------------a~d~~~~iV~~aF~~l~~I 1094 (1619)
...||.-.++...|++.+.||..++.++..|||- |-+.+..+++.- -+|.+.+|-+.|++..-.+
T Consensus 298 V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 298 VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3458888888899999999999999999999998 777776666431 1356677778888887666
Q ss_pred HhcccCCccccccchHHHHHHHHHHHHcC
Q 000357 1095 VREYFPHITETESTTFTDCVKCLLTFTNS 1123 (1619)
Q Consensus 1095 ~~d~~~~l~~~~~~~f~d~I~cL~~F~~~ 1123 (1619)
+++ .+..-+++=|.+|-.+
T Consensus 378 vn~----------~Nv~~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 378 VNE----------SNVRVMVKELLEFLES 396 (866)
T ss_pred hcc----------ccHHHHHHHHHHHHHh
Confidence 654 4566677777777643
No 63
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.22 E-value=6.4e+02 Score=32.95 Aligned_cols=124 Identities=15% Similarity=0.267 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhchhh------------hhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcH
Q 000357 999 FVMDSLRQLAMKFLEREE------------LANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 1066 (1619)
Q Consensus 999 ~AiDsLrQLs~kfLe~eE------------L~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk 1066 (1619)
-|||.+|-||.+|-.+.. -.+|.|-+-.......+|.. .++-||.+|+.++.+|+.+--+ +
T Consensus 394 I~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~-----~ 466 (898)
T COG5240 394 IAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYH-----Q 466 (898)
T ss_pred EeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchh-----H
Confidence 456777777766653211 14566766666666666643 4588999999999999876422 2
Q ss_pred HHHHHHHHhhcc----chH-HHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHH-HHHHHH
Q 000357 1067 SVFSIFTAAAAD----ERK-NIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAI-AFLRFC 1140 (1619)
Q Consensus 1067 ~IF~iL~~aa~d----~~~-~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI-~~L~~~ 1140 (1619)
....||..-.++ +.| .-|+.-|. .|+-+. .+ .=...|.||++|+-+..|. .+-.++ ..|+.|
T Consensus 467 I~vrIL~iLG~EgP~a~~P~~yvrhIyN---R~iLEN--~i------vRsaAv~aLskf~ln~~d~-~~~~sv~~~lkRc 534 (898)
T COG5240 467 ITVRILGILGREGPRAKTPGKYVRHIYN---RLILEN--NI------VRSAAVQALSKFALNISDV-VSPQSVENALKRC 534 (898)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHH---HHHHhh--hH------HHHHHHHHHHHhccCcccc-ccHHHHHHHHHHH
Confidence 223344443322 112 23333322 222221 11 1245688999999765543 445554 455666
Q ss_pred H
Q 000357 1141 A 1141 (1619)
Q Consensus 1141 ~ 1141 (1619)
.
T Consensus 535 l 535 (898)
T COG5240 535 L 535 (898)
T ss_pred h
Confidence 3
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=24.18 E-value=83 Score=27.40 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q 000357 1274 AAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHL 1325 (1619)
Q Consensus 1274 ~~~AL~~lv~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~L 1325 (1619)
...|+..++.+-......+.+....++..|..++..+++.+-..++.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3445555655444455667778899999999999989999988888888654
No 65
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=24.11 E-value=4.8e+02 Score=31.72 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=58.9
Q ss_pred HHhHHHHHHHHHHHHHHHhc--hhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHH
Q 000357 1271 SETAAIGAECLVDIFICFFD--VVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELG-SRLSQDEWREILLALKE 1347 (1619)
Q Consensus 1271 ~eT~~~AL~~lv~LF~~yf~--~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g-~~f~~~~W~~i~~~l~~ 1347 (1619)
..|+..||..++++|.+++- .+..-...+++.+.+|++.+..+=...+..++.=|.++.| ..=.++.++.+...|.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 58999999999999988763 3445577889999999998876556677788887877766 33355666666655555
Q ss_pred HHhh
Q 000357 1348 TTAS 1351 (1619)
Q Consensus 1348 ~f~~ 1351 (1619)
+...
T Consensus 137 ~l~d 140 (309)
T PF05004_consen 137 ILTD 140 (309)
T ss_pred HHhC
Confidence 5443
No 66
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.02 E-value=4.2e+02 Score=28.45 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=49.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHhh-c--hhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcH
Q 000357 990 LSENLSVAIFVMDSLRQLAMKFL-E--REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 1066 (1619)
Q Consensus 990 ch~n~~Va~~AiDsLrQLs~kfL-e--~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk 1066 (1619)
.|+|..+..+|+..|--+ ++-- . ..|.+. ++|+.-+..+.....+..|++.+++.|. +|.
T Consensus 51 ~~~n~~vql~AL~LLe~~-vkNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~------------~W~ 113 (142)
T cd03569 51 LSKNPNVQLYALLLLESC-VKNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ------------AWA 113 (142)
T ss_pred cCCChHHHHHHHHHHHHH-HHHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH------------HHH
Confidence 468889999998766543 3211 0 123333 4567777777766778999999998885 666
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHH
Q 000357 1067 SVFSIFTAAAADERKNIVLLAFETME 1092 (1619)
Q Consensus 1067 ~IF~iL~~aa~d~~~~iV~~aF~~l~ 1092 (1619)
.-|. .+++-..+..+|+.++
T Consensus 114 ~~f~------~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 114 LAFR------NKPQLKYVVDTYQILK 133 (142)
T ss_pred HHhC------CCcccHHHHHHHHHHH
Confidence 5552 2233345555565553
No 67
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=23.84 E-value=7.5e+02 Score=24.81 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHH
Q 000357 1203 IRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLV 1282 (1619)
Q Consensus 1203 VR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~~~~~s~~~e~~~Wl~eT~~~AL~~lv 1282 (1619)
.|++++-.|-.+-..-|.. +...++.++-|++.-+.. ++..+ .-....||..++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rV--Ry~AcEaL~ni~ 55 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRV--RYYACEALYNIS 55 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHH--HHHHHHHHHHHH
Confidence 4778888887776655443 788899999999977643 22111 223445555555
Q ss_pred HHHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHH
Q 000357 1283 DIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLA 1326 (1619)
Q Consensus 1283 ~LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li 1326 (1619)
+++. +.+-..+.++++.|.+.+..+++.+ +.|..-|-+|+
T Consensus 56 k~~~---~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 56 KVAR---GEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL 95 (97)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence 5543 3333456777777777777666664 45556666655
No 68
>PLN03205 ATR interacting protein; Provisional
Probab=23.63 E-value=1.1e+03 Score=29.40 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=74.2
Q ss_pred ccCcHHHHHHHHHhhccchHHHH-HHHHHHHHHHHh--------cccCCccccccchHHHHHHHHHHHHcCCCCccccHH
Q 000357 1062 KSGWKSVFSIFTAAAADERKNIV-LLAFETMEKIVR--------EYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLN 1132 (1619)
Q Consensus 1062 kSGWk~IF~iL~~aa~d~~~~iV-~~aF~~l~~I~~--------d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~ 1132 (1619)
.-.|-.+|+++...|..+.++-| ..|..+..-|.. +-|... ...+-+..+-+.....-+--+
T Consensus 366 ~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~---------~VfESiaQLLkkEaGl~VqKe 436 (652)
T PLN03205 366 DANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARESFVSK---------EVFESISLLLRKEGGLHVRKE 436 (652)
T ss_pred cccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHHHhcch---------HHHHHHHHHHHHhccchhhHH
Confidence 44899999999887655444444 346666665542 223221 223333334333333344445
Q ss_pred HHHHH---HHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcc-----CChHHHH
Q 000357 1133 AIAFL---RFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS-----DSRSTIR 1204 (1619)
Q Consensus 1133 AI~~L---~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-----d~r~eVR 1204 (1619)
|+.+| -+|..-+.--.-.+.+.... +...+ ........+.+-.+|.||++++. -.+.+.|
T Consensus 437 alhLLfLLLNCpklL~iFcSg~~e~~~a---------d~eNd---~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLc 504 (652)
T PLN03205 437 AIHLFYLLLNCPKLYDRFDSLHEEKNSS---------DTEND---SEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELC 504 (652)
T ss_pred HHHHHHHHHcCcHHHHHHhcCCcccccc---------ccccc---cccccccHHHHHHHHHHHHHHHcCCCCChhhhHHH
Confidence 66544 45554443110011111110 00000 00011233456789999999742 2578999
Q ss_pred HHHHHHH----------HHHHHhcCCCCChhhHHHHHH
Q 000357 1205 KSSLEVL----------FNILKDHGHLFPRQFWMGVYS 1232 (1619)
Q Consensus 1205 ~~ALqtL----------F~iL~~~G~~f~~~~W~~if~ 1232 (1619)
++|+-.| |++|..|--.=+.+|-..|.+
T Consensus 505 k~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILq 542 (652)
T PLN03205 505 RNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILH 542 (652)
T ss_pred HHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHH
Confidence 9999877 444443332224555555544
No 69
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.66 E-value=7.8e+02 Score=26.38 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=50.8
Q ss_pred HHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhcCC---CCCChHHHHHHHHHHHHH----HcC
Q 000357 261 LLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENV---LQPSFVQKMTVLNLLEKI----SQD 331 (1619)
Q Consensus 261 L~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vfl~~I~l~iLe~~---~~~~~~qk~~vL~~l~~l----~~d 331 (1619)
|.|-..+..+.+--++|.+.=.++.+....+..||. -|+++++ +++..+ ..++..-|.-+|+++... +.+
T Consensus 43 i~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~-kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (139)
T cd03567 43 LAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI-KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHE 121 (139)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH-HHhccccCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 444445777888899999999999999999999985 6888864 566431 123333344567766643 355
Q ss_pred chhHHHHH
Q 000357 332 SQIIVDVF 339 (1619)
Q Consensus 332 p~~lvely 339 (1619)
|+ +.+.|
T Consensus 122 p~-~~~~Y 128 (139)
T cd03567 122 PK-IKEAY 128 (139)
T ss_pred ch-HHHHH
Confidence 55 33444
No 70
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.58 E-value=9.3e+02 Score=28.72 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred chhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC-CC---CChhhHHHHHHHhhHhhhhhccccCCCCCCCCCCC
Q 000357 1181 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HL---FPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDS 1256 (1619)
Q Consensus 1181 ~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~G-~~---f~~~~W~~if~~VLfPifd~l~~~~~~~~~~~~~~ 1256 (1619)
....|--++=.+-.++-|..+++|-.+++.|-.++..-. .. |...-...+|...|+|.+-.+....
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~t---------- 182 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPIT---------- 182 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCC----------
Confidence 445665566666677778899999999999999998433 22 2222334555555555555553211
Q ss_pred CCCCCCCccccccHHHhHHHHHHHHHHHHHHHh--------chhhhhHH-HHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q 000357 1257 PTSHSPLSEGSTWDSETAAIGAECLVDIFICFF--------DVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLAG 1327 (1619)
Q Consensus 1257 ~~~~s~~~e~~~Wl~eT~~~AL~~lv~LF~~yf--------~~l~~ll~-~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~ 1327 (1619)
.++ +.. .-...|...+..|+.--+ ..+..++. .+|.-+..+..-++..+...-.+.+..++.
T Consensus 183 ------p~~--~s~-~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 183 ------PED--ESL-ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred ------Cch--hhH-HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 111 111 334455555555544322 11222222 233333333333347888888888888777
Q ss_pred hhCCCCCHHHHHHHHHH
Q 000357 1328 ELGSRLSQDEWREILLA 1344 (1619)
Q Consensus 1328 ~~g~~f~~~~W~~i~~~ 1344 (1619)
.-|. ..-.+-+.++-.
T Consensus 254 ~lGi-~~~~hL~rii~~ 269 (282)
T PF10521_consen 254 ELGI-SSVKHLQRIIPV 269 (282)
T ss_pred Hhcc-HHHHHHHHHHHH
Confidence 6443 333444444333
No 71
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=22.55 E-value=59 Score=32.85 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=31.5
Q ss_pred Ccccccc-HHHhHHHHHHHHHHHHHHHhchhhh-------hHHHHHHHHHhc
Q 000357 1263 LSEGSTW-DSETAAIGAECLVDIFICFFDVVRS-------QLPGVVSILTGF 1306 (1619)
Q Consensus 1263 ~~e~~~W-l~eT~~~AL~~lv~LF~~yf~~l~~-------ll~~lL~lL~~~ 1306 (1619)
+.+...| +.++...|+.|+|++|.+++...++ =..++++++..+
T Consensus 13 ~~~sRTy~DyeSv~~cmegIC~~YE~~LK~~nP~~~~ItYdIs~Lf~fID~l 64 (102)
T PF01133_consen 13 RPESRTYSDYESVNECMEGICKIYEEHLKRKNPNSPSITYDISDLFDFIDSL 64 (102)
T ss_dssp SCCC-EEEEESSHHHHHHHHHHHHHHHHHHHSTT-SS----HHHHHHHHHHS
T ss_pred CCCcceeechhhHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHhhh
Confidence 4444455 4689999999999999999987764 245666666543
No 72
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=2.2e+03 Score=29.72 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 000357 926 NSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLR 1005 (1619)
Q Consensus 926 ~~eAiv~FV~ALc~vS~eEl~s~~~Pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vL~~hf~~vgch~n~~Va~~AiDsLr 1005 (1619)
+.|+...++.++.+.+. + +.++--=...++..+-..-|.+-- =++ +...+.-.+.+.++...+.| |.
T Consensus 124 seDs~~grl~~~~e~~~--l--~qhl~g~lgprv~~ll~rt~~~sa--sSk----~kkLL~gL~~~~Des~Qlea---l~ 190 (1051)
T KOG0168|consen 124 SEDSEAGRLQALLEARG--L--PQHLFGRLGPRVLQLLHRTIGSSA--SSK----AKKLLQGLQAESDESQQLEA---LT 190 (1051)
T ss_pred ccccchhhhhhhhhccc--c--CcccccccchhHHHHhhhcccccc--hHH----HHHHHHhccccCChHHHHHH---HH
Confidence 34566677777776654 1 111111123444455444443321 122 33334445556677666555 55
Q ss_pred HHHHHhh--chhhhhchhhhhhhHHH-HHHHHhccCChHHHHHHHHHHHHHHHhhcccc----ccCcHHHHH-HHHHhhc
Q 000357 1006 QLAMKFL--EREELANYNFQNEFLRP-FVIIMQKSGSAEIRELIIRCISQMVLSRVSNV----KSGWKSVFS-IFTAAAA 1077 (1619)
Q Consensus 1006 QLs~kfL--e~eEL~~f~FQk~fLkP-Fe~Im~~s~~~eIre~IL~cl~qmI~~~~~~I----kSGWk~IF~-iL~~aa~ 1077 (1619)
+||--+. ..+-|.. |--+-|-| +..++++..+.||.-+..||+..|.+.....+ .-+=-++|- =|-+
T Consensus 191 Elce~L~mgnEesLs~--fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~--- 265 (1051)
T KOG0168|consen 191 ELCEMLSMGNEESLSG--FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT--- 265 (1051)
T ss_pred HHHHHHhhcchhhhcc--ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh---
Confidence 5553333 3445553 44344444 55677888889999999999999999876554 333334432 1111
Q ss_pred cchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHh
Q 000357 1078 DERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKL 1144 (1619)
Q Consensus 1078 d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L 1144 (1619)
-..-++.+++.+.|++|-++|-..+. ..+++..|+.-|.-|+.. +--.||..--+|...|
T Consensus 266 IeyiDvAEQ~LqALE~iSR~H~~AiL--~AG~l~a~LsylDFFSi~-----aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 266 IEYIDVAEQSLQALEKISRRHPKAIL--QAGALSAVLSYLDFFSIH-----AQRVALAIAANCCKSI 325 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHH--hcccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcC
Confidence 13456889999999999999876554 368999999888888743 2234565555665554
No 73
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=21.65 E-value=1.8e+03 Score=28.51 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHhchhhhhHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 000357 1284 IFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREI 1341 (1619)
Q Consensus 1284 LF~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f~~~~W~~i 1341 (1619)
+...||..++..+-++...+..|+-.....+-.-|..|+..+..+.+....++.|+.-
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 4445676666667788888888888888888888889999999999888888888753
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.52 E-value=2.5e+02 Score=26.38 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=46.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHH
Q 000357 990 LSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVF 1069 (1619)
Q Consensus 990 ch~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF 1069 (1619)
.+++..++..|+..|.++ . ..+.+.++...+ .+.++.||..++..+.++ |.+..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~----------~----~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGEL----------G----DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCC----------T----HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHc----------C----CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 578888999988887742 1 124556666666 568899999999999865 445556
Q ss_pred HHHHHhhccchHHHH
Q 000357 1070 SIFTAAAADERKNIV 1084 (1619)
Q Consensus 1070 ~iL~~aa~d~~~~iV 1084 (1619)
..|.....+++...|
T Consensus 65 ~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 65 PALIKLLQDDDDEVV 79 (88)
T ss_dssp HHHHHHHTC-SSHHH
T ss_pred HHHHHHHcCCCcHHH
Confidence 666555544434444
No 75
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=1.8e+03 Score=30.23 Aligned_cols=163 Identities=19% Similarity=0.326 Sum_probs=92.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHH
Q 000357 991 SENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFS 1070 (1619)
Q Consensus 991 h~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~FQk~fLkPFe~Im~~s~~~eIre~IL~cl~qmI~~~~~~IkSGWk~IF~ 1070 (1619)
+.|.+|.+.+...+-++|-+- + -.-|-+|+..+|+.+. ++|.++|+||..|...+..-. .+=|.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~----~------~~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF----~P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN----Q------VTKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLF----EPHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH----H------HHHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhh----hhhhh
Confidence 457888888777777665332 2 1235788888887665 789999999999986653221 11111
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcc
Q 000357 1071 IFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLV 1150 (1619)
Q Consensus 1071 iL~~aa~d~~~~iV~~aF~~l~~I~~d~~~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~ 1150 (1619)
-|-.-+.|+. .+-..=.++|..+.++ .+...+..=|-.|++.... ...-.||..+-.|+..+.+-.
T Consensus 362 sFfv~ssDp~-~vk~lKleiLs~La~e----------sni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~-- 427 (968)
T KOG1060|consen 362 SFFVRSSDPT-QVKILKLEILSNLANE----------SNISEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVT-- 427 (968)
T ss_pred ceEeecCCHH-HHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchh--
Confidence 2212222211 1222234444444332 2233333334444544322 355667777777876553110
Q ss_pred cccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhc
Q 000357 1151 CNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDH 1218 (1619)
Q Consensus 1151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~r~eVR~~ALqtLF~iL~~~ 1218 (1619)
+ -.|.+|..+......-|=..|..++-.+|...
T Consensus 428 --------------------------~---------tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 428 --------------------------D---------TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred --------------------------h---------HHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 0 35677777776667778888888888888743
No 76
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.08 E-value=8.5e+02 Score=26.23 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=43.6
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 000357 265 SALSVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 329 (1619)
Q Consensus 265 ~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vfl~~I~l~iLe~~~~~~~~qk~~vL~~l~~l~ 329 (1619)
..+..+.+--.+|.+.=.++.+...++..||. -|++++. +++..+..+ .-|.-+|+++....
T Consensus 46 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~-kl~~~~~~~--~Vk~kil~li~~W~ 109 (144)
T cd03568 46 LNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK-KLINDRVHP--TVKEKLREVVKQWA 109 (144)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH-HHhcccCCH--HHHHHHHHHHHHHH
Confidence 33556888888999999999999999998884 6888864 555543223 33445677776543
Done!