Query 000357
Match_columns 1619
No_of_seqs 382 out of 1118
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 16:28:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000357.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_136-139//hhsearch_pdb/000357hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 483.8 20.6 197 452-648 10-208 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 479.2 21.5 195 455-649 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 471.3 19.8 196 453-650 16-228 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 448.6 20.6 191 461-651 8-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 448.1 22.7 192 458-649 12-203 (347)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 50.8 36.4 17 315-331 142-158 (852)
7 1ibr_B P95, importin beta-1 su 1.0 1 1 46.2 20.6 332 957-1345 111-456 (462)
8 2bpt_A Importin beta-1 subunit 1.0 1 1 45.2 36.2 42 1292-1333 772-818 (861)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 41.1 36.4 105 1188-1329 857-962 (1230)
10 1qgr_A Protein (importin beta 1.0 1 1 40.1 27.0 39 1293-1331 791-831 (876)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=483.81 Aligned_cols=197 Identities=52% Similarity=0.917 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 88999999599999999996059156599999649999997989998740799994567621024414539999999830
Q 000357 452 ATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDS 531 (1619)
Q Consensus 452 ~~~e~~k~~K~~l~~~~~~FN~~pkkgi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~fv~~ 531 (1619)
.+||+.|++|..+++|+.+||.|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 599998808999998524778985578999999999999761999--989900899999999972100000002699987
Q 000357 532 FNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 609 (1619)
Q Consensus 532 ~df~~~~~~~ALR~fL~~frLPgEaq~Idrile~Fa~~y~~~Np~--~f~~~d~~y~LaysiimLntDlHn~~vk~kmt~ 609 (1619)
|||+|+++|+|||.||.+||||||+|+|||+||+||+|||+|||+ .|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 889983137889999988899999999873645557788
Q 000357 610 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADS 648 (1619)
Q Consensus 610 ~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~ 648 (1619)
++||+|+||+|+|+|+|+++|++||++|+++||+|+++.
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998654367899999999999999984876278998
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=479.18 Aligned_cols=195 Identities=52% Similarity=0.876 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999599999999996059156599999649999997989998740799994567621024414539999999830599
Q 000357 455 EQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNF 534 (1619)
Q Consensus 455 e~~k~~K~~l~~~~~~FN~~pkkgi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~fv~~~df 534 (1619)
++.+++|+.+..|+.+||.+||+||+||+++|+++++|++||+||+.++||||++||+|||++++++.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99880899999852477898557899999999999976199998990089999999997210000000269998788998
Q 000357 535 KGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIR 614 (1619)
Q Consensus 535 ~~~~~~~ALR~fL~~frLPgEaq~Idrile~Fa~~y~~~Np~~f~~~d~~y~LaysiimLntDlHn~~vk~kmt~~~Fi~ 614 (1619)
+|+++|+|||.||.+||||||+|+|||+||+||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 31378899999888999999998736455577888
Q 000357 615 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 649 (1619)
Q Consensus 615 n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~ 649 (1619)
|+||+|+|+|+|+++|++||++|+.+||+|++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=471.27 Aligned_cols=196 Identities=36% Similarity=0.617 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC-CHHHHHHHHHCC-CCCCHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999995999999999960591565999996499999-979899987407-9999456762102441453999999983
Q 000357 453 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLKNT-TGLNETMIGDYLGEREEFSLKVMHAYVD 530 (1619)
Q Consensus 453 ~~e~~k~~K~~l~~~~~~FN~~pkkgi~~l~~~~~i~~-~p~~iA~fL~~~-~~L~k~~iGeyLg~~~~~~~~vl~~fv~ 530 (1619)
.++++|++|..+.+|+.+||++||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ +.+||++|++
T Consensus 16 ~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 16 PRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999995499999999998898389998999999997276569999999980821--7999999985
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 059999880899999852477898557899999999999976199---------------99899008999999999721
Q 000357 531 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIMLN 595 (1619)
Q Consensus 531 ~~df~~~~~~~ALR~fL~~frLPgEaq~Idrile~Fa~~y~~~Np---------------~~f~~~d~~y~LaysiimLn 595 (1619)
.|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| +.|.++|+||+|+|||||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42679997999999999808588519999999999999999818777532101001122345577028999999999980
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0000000269998788998313788999998889999999987364555778888
Q 000357 596 TDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSA 650 (1619)
Q Consensus 596 tDlHn~~vk~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~~ 650 (1619)
||+|||++|+|||+++||+|+||+|+|+|||++||++||++|+.+||+|++|+.+
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1302643467777999999864656778888999999999998483468866779
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=448.61 Aligned_cols=191 Identities=37% Similarity=0.623 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCC--CCCCHHHHHHHHHC-CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999960591565999996499--99997989998740-799994567621024414539999999830599998
Q 000357 461 KIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFLKN-TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 537 (1619)
Q Consensus 461 K~~l~~~~~~FN~~pkkgi~~l~~~~~--i~~~p~~iA~fL~~-~~~L~k~~iGeyLg~~~~~~~~vl~~fv~~~df~~~ 537 (1619)
|+...+|+.+||++||+||+||++.+. ..++|++||+||+. +++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 8 ~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g~ 87 (356)
T 1xsz_A 8 EKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQ 87 (356)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998159999999999860015899999999999845878899999999857845789999999996697999
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHH
Q ss_conf 8089999985247789855789999999999997619999899008999999999721000000026--99987889983
Q 000357 538 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIRN 615 (1619)
Q Consensus 538 ~~~~ALR~fL~~frLPgEaq~Idrile~Fa~~y~~~Np~~f~~~d~~y~LaysiimLntDlHn~~vk--~kmt~~~Fi~n 615 (1619)
+||+|||.||.+||||||+|+|||+||+||+|||+|||+.|.|+|+||+|+||+||||||+|||++| +|||+++||+|
T Consensus 88 ~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFikN 167 (356)
T 1xsz_A 88 SFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRN 167 (356)
T ss_dssp CHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999998284885088999999999999997399866874389999999998621003865554578989999998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 137889999988899999999873645557788881
Q 000357 616 NRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAP 651 (1619)
Q Consensus 616 ~~gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~~~ 651 (1619)
+||+|+|+|+|+++|++||++|+.+||++...+..+
T Consensus 168 ~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 168 LRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=448.15 Aligned_cols=192 Identities=51% Similarity=0.876 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99599999999996059156599999649999997989998740799994567621024414539999999830599998
Q 000357 458 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 537 (1619)
Q Consensus 458 k~~K~~l~~~~~~FN~~pkkgi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~fv~~~df~~~ 537 (1619)
+++|..+.+|+.+||.+|++||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 80899999852477898557899999999999976199998990089999999997210000000269998788998313
Q 000357 538 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 617 (1619)
Q Consensus 538 ~~~~ALR~fL~~frLPgEaq~Idrile~Fa~~y~~~Np~~f~~~d~~y~LaysiimLntDlHn~~vk~kmt~~~Fi~n~~ 617 (1619)
+||+|||.||.+||||||+|+||||||+||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78899999888999999998736455577888
Q 000357 618 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 649 (1619)
Q Consensus 618 gi~~~~d~p~~~L~~iY~~I~~~ei~l~~~~~ 649 (1619)
|+|+|+|+|+++|+.+|++|+.+||.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=50.77 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 67899999999999708
Q 000357 315 FVQKMTVLNLLEKISQD 331 (1619)
Q Consensus 315 ~~qk~~vLe~l~~l~~~ 331 (1619)
...+...+.++..+|.+
T Consensus 142 ~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 142 YNTCEGAFGALQKICED 158 (852)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999998
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=46.22 Aligned_cols=332 Identities=14% Similarity=0.150 Sum_probs=175.4
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 999999852012211202357999999999722687--666999999999999999610454201123555477999998
Q 000357 957 TKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSE--NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIM 1034 (1619)
Q Consensus 957 qKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vgch~--n~~Ia~~AiDsLrQLs~kfLe~eEL~~f~FQ~~fLkPFe~Im 1034 (1619)
+-|.+|+..-.. .-.|+.+...+...+ ..+ +..++..|+..|+.++-++-. +.+. .+-..++..|...+
T Consensus 111 ~~i~~ia~~~~~--~~~w~~ll~~L~~~l----~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l 181 (462)
T 1ibr_B 111 QCVAGIACAEIP--VNQWPELIPQLVANV----TNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGM 181 (462)
T ss_dssp HHHHHHHHHHGG--GTCCTTHHHHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CCCCHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHH
T ss_conf 999999997665--002699999999986----26788789999999999999981871-5347--67999999999986
Q ss_pred HCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 2059-868999999999999981002456682---899999987420413789999999999999500687653540219
Q 000357 1035 QKSG-SAEIRELIIRCISQMVLSRVSNVKSGW---KSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTF 1110 (1619)
Q Consensus 1035 ~~s~-~~eVre~IL~cl~qlI~~~~~~IkSGW---k~IF~iL~~aa~d~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f 1110 (1619)
.... +.+||...++|+..++.....+. ..| ..+..++.....+.++.+...+++++..+...+...+. ..+
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~ 256 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYM 256 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_conf 7999989999999999999999999843-23678989999999853799789999999999999999899999----888
Q ss_pred H-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHH
Q ss_conf 9-999999998708889543188999999999983108753356898889999988999886667788-54211427999
Q 000357 1111 T-DCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSD-KDDNSSFWVPL 1188 (1619)
Q Consensus 1111 ~-dlI~cL~~F~~~~~d~niSL~AI~~L~~~~~~L~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~lW~pL 1188 (1619)
. .++..+....+. .+.++...|++++..++........ .......+ .......... -..+..-.+|.
T Consensus 257 ~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 257 GPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAI-EASEAAEQ---------GRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp TTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHH-HHCCTTCS---------SSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC---------CCCCCCHHHHHHHHHHHHCCHH
T ss_conf 88999999999828-8609999999999999998887887-60100003---------7886303599999876640079
Q ss_pred HHH-HHHHC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997-76420---68828888999999999998529999953599999995675462102457899999999999889996
Q 000357 1189 LTG-LSKLT---SDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLS 1264 (1619)
Q Consensus 1189 L~~-L~~l~---~d~R~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPlld~l~~~~~~~~~~~~~~~~~~s~~~ 1264 (1619)
+.. |.+.- .+....+|..|...|-.+....|. .++. .++|.+..... +
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--------~~~~-~~~~~l~~~l~------------------~- 377 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--------DIVP-HVLPFIKEHIK------------------N- 377 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--------THHH-HHHHHHHHHTT------------------C-
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCH--------HHHH-HHHHHHHHHHC------------------C-
T ss_conf 999987444444444332889999999999986358--------7899-99999999843------------------8-
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH
Q ss_conf 566408-986999998789998977302662399999999760227997056999999999999618999-988799999
Q 000357 1265 EGSTWD-SETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL-SQDEWREIL 1342 (1619)
Q Consensus 1265 e~~~W~-~eT~~lAL~~lv~lf~~yf~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~g~~f-~~~~W~~i~ 1342 (1619)
..|. .+....++..+++-.. -+.+...+..++..+..++..++..+...++.++.++....++.+ ....-..++
T Consensus 378 --~~~~~r~aal~~l~~l~~~~~--~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 378 --PDWRYRDAAVMAFGCILEGPE--PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp --SSHHHHHHHHHHHHHTSSSSC--TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf --975899999999999864876--7778988999999999996699789999999999999986201146577899999
Q ss_pred HHH
Q ss_conf 999
Q 000357 1343 LAL 1345 (1619)
Q Consensus 1343 ~~l 1345 (1619)
..+
T Consensus 454 ~~L 456 (462)
T 1ibr_B 454 QCL 456 (462)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=45.24 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 6623999999997602279----9705699999999999961-8999
Q 000357 1292 VRSQLPGVVSILTGFIRSP----IQGPASTGVAALLHLAGEL-GSRL 1333 (1619)
Q Consensus 1292 l~~ll~~lL~lL~~~I~q~----~~~ia~ig~~cL~~Li~~~-g~~f 1333 (1619)
+.+....++.++..+...+ ++.+.+.+..++..|...- |+.|
T Consensus 772 ~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 772 LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp HGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999999874855578699999999999999988288248
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=41.08 Aligned_cols=105 Identities=8% Similarity=-0.003 Sum_probs=61.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99977642068828888999999999998529999953599999995675462102457899999999999889996566
Q 000357 1188 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 1267 (1619)
Q Consensus 1188 LL~~L~~l~~d~R~eVR~~ALqtLF~iL~~~G~~f~~~~W~~if~~VLfPlld~l~~~~~~~~~~~~~~~~~~s~~~e~~ 1267 (1619)
+...+.....++..+||..|...|=.+...+ +.. ++-.++..+.. ..+.
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~--------~~~----~lp~ll~~l~~------------------~~~~- 905 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISVGN--------LPE----YLPFVLQEITS------------------QPKR- 905 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT--------HHH----HHHHHHHHHHS------------------CGGG-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--------HHH----HHHHHHHHHHC------------------CCHH-
T ss_conf 8999999847997789999999968775269--------998----89999998726------------------6032-
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 408986999998789998977-30266239999999976022799705699999999999961
Q 000357 1268 TWDSETAAIGAECLVDIFICF-FDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGEL 1329 (1619)
Q Consensus 1268 ~W~~eT~~lAL~~lv~lf~~y-f~~l~~ll~~lL~lL~~~I~q~~~~ia~ig~~cL~~Li~~~ 1329 (1619)
.++..++++.++. +- -+.+.+....++..|.+.+..+.+.+......||..|+...
T Consensus 906 ---~~~~l~al~e~i~---~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 906 ---QYLLLHSLKEIIS---SASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp ---HHHHHHHHHHHHH---SSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf ---4988999999982---38766677669999999998733830446899998875665067
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=40.14 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 623999999997602279--970569999999999996189
Q 000357 1293 RSQLPGVVSILTGFIRSP--IQGPASTGVAALLHLAGELGS 1331 (1619)
Q Consensus 1293 ~~ll~~lL~lL~~~I~q~--~~~ia~ig~~cL~~Li~~~g~ 1331 (1619)
.+.+..++.++......+ ++.+.+.+..||..|+...|.
T Consensus 791 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 791 QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998658888889999999999999988284
Done!