BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000359
         (1618 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
            Methyltransferase
 pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
            Methyltransferase
          Length = 222

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 30/160 (18%)

Query: 1057 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEF 1116
            +++ A  KG G+   +    G+  F++E+LGEV                         EF
Sbjct: 77   ERFRAEEKGWGIRTKEPLKAGQ--FIIEYLGEVVS---------------------EQEF 113

Query: 1117 YNIYLERPKGDADGYDL-----VVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGI 1171
             N  +E+    +D Y L     +V+D+    N A  I HSC PNCE +  +V+G Y+IG+
Sbjct: 114  RNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGL 173

Query: 1172 YTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1211
            Y ++ +  G E+T+DYN  + + E+ +  +C CG + CRG
Sbjct: 174  YALKDMPAGTELTYDYNFHSFNVEKQQ--LCKCGFEKCRG 211


>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
            Domain With The Cofactor Product S-Adenosylhomocysteine.
 pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
            Domain With The Cofactor Product S-Adenosylhomocysteine
            And Histone Peptide
          Length = 192

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 1065 GLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERP 1124
            G G+ C +    GE   V+E+ G V            IRS+Q +  +   +   I     
Sbjct: 63   GRGLFCKRNIDAGE--MVIEYAGNV------------IRSIQTDKREKYYDSKGIGCYMF 108

Query: 1125 KGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEIT 1184
            + D    D  VVDA    N A  I HSC PNC ++V  +DG   I I+ +R I+ GEE+T
Sbjct: 109  RID----DSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELT 164

Query: 1185 FDYNSVTESKEEYEASVCLCGSQVCRGSYLN 1215
            +DY    E         C CG++ CR  +LN
Sbjct: 165  YDYKFPIEDAS--NKLPCNCGAKKCR-KFLN 192


>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
            Domain- Containing Protein 2 Compound: Pr-Snf
 pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
            Set Domain- Containing Protein 2 In Complex With
            S-Adenosyl-L-Homocysteine
          Length = 278

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 1063 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLE 1122
            +KG G+   K+     + FV+E+ GEV    K F+ +    +  KN         + Y  
Sbjct: 126  KKGWGLRAAKD--LPSNTFVLEYCGEVLD-HKEFKARVKEYARNKN--------IHYYFM 174

Query: 1123 RPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
              K D       ++DA  K N +  + HSC PNCE +   V+G  ++G +T + +  G E
Sbjct: 175  ALKNDE------IIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSE 228

Query: 1183 ITFDYNSVTESKEEYEASVCLCGSQVCRG 1211
            +TFDY      K   EA  C CGS  CRG
Sbjct: 229  LTFDYQFQRYGK---EAQKCFCGSANCRG 254


>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
            N-Methyltransferase Nsd1 Set Domain In Complex With
            S-Adenosyl-L-Methionine
          Length = 232

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 18/132 (13%)

Query: 1080 DFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAM 1139
            +FV E++GE+       ++++    ++   E     FY + L++ +         ++DA 
Sbjct: 116  EFVNEYVGEL------IDEEECRARIRYAQEHDITNFYMLTLDKDR---------IIDAG 160

Query: 1140 HKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEA 1199
             K NYA  + H C+PNCE +  +V+G  ++G++ +  I  G E+TF+YN       +   
Sbjct: 161  PKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGK--- 217

Query: 1200 SVCLCGSQVCRG 1211
            +VC CG+  C G
Sbjct: 218  TVCKCGAPNCSG 229


>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
            3-9 Homolog 2
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 1132 DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH----YQIGIYTVRGIHYGEEITFDY 1187
            D   VDA    N +  + HSC PN +     +D       +I +++ R I+ GEE+TFDY
Sbjct: 203  DEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262

Query: 1188 ----------NSVTESKEEYEA-SVCLCGSQVCRGSYLN 1215
                      +S+  S  +    +VC CG+  CRG YLN
Sbjct: 263  QMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRG-YLN 300


>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y245f  H4-Lys20  ADOHCY
 pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y245f  H4-Lys20  ADOHCY
 pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y245f  H4-Lys20  ADOHCY
 pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y245f  H4-Lys20  ADOHCY
          Length = 166

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1064 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1123
            KG GV+  K+  F   DFVVEF G++       E  D  +      +DP+   Y  Y + 
Sbjct: 40   KGRGVIATKQ--FSRGDFVVEFHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 91

Query: 1124 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
                        VDA  + N   R I HS   NC+ K+  +DG   + +   R I  GEE
Sbjct: 92   LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 145

Query: 1183 ITFDYNSVTESKEE 1196
            + +DY   +++  E
Sbjct: 146  LLYDYGDRSKASIE 159


>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20  ADOHCY
 pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20  ADOHCY
 pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20  ADOHCY
 pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20  ADOHCY
 pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20me2 Adohcy
 pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20me2 Adohcy
 pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20me2 Adohcy
 pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-Y334f  H4-Lys20me2 Adohcy
 pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
            Adohcy
 pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
            Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
            Adohcy
          Length = 166

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1064 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1123
            KG GV+  K+  F   DFVVE+ G++       E  D  +      +DP+   Y  Y + 
Sbjct: 40   KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 91

Query: 1124 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
                        VDA  + N   R I HS   NC+ K+  +DG   + +   R I  GEE
Sbjct: 92   LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 145

Query: 1183 ITFDYNSVTESKEE 1196
            + FDY   +++  E
Sbjct: 146  LLFDYGDRSKASIE 159


>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
 pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
          Length = 165

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 1064 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1123
            KG GV+  K+  F   DFVVE+ G++       E  D  +      +DP+   Y  Y + 
Sbjct: 39   KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 90

Query: 1124 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
                        VDA  + N   R I HS   NC+ K+  +DG   + +   R I  GEE
Sbjct: 91   LS------KTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEE 144

Query: 1183 ITFDYN 1188
            + +DY 
Sbjct: 145  LLYDYG 150


>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
            Peptide (16-24) And Adohcy
 pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
            Peptide (16-24) And Adohcy
 pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
            Peptide (16-24) And Adohcy
 pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
            Peptide (16-24) And Adohcy
          Length = 167

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1064 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1123
            KG GV+  K+  F   DFVVE+ G++       E  D  +      +DP+   Y  Y + 
Sbjct: 41   KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 92

Query: 1124 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
                        VDA  + N   R I HS   NC+ K+  +DG   + +   R I  GEE
Sbjct: 93   LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 146

Query: 1183 ITFDYNSVTESKEE 1196
            + +DY   +++  E
Sbjct: 147  LLYDYGDRSKASIE 160


>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone
            Methyltransferase Pr-Set7 (Also Known As Set8)
 pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human Histone
            Methyltransferase Pr-Set7 (Also Known As Set8)
          Length = 161

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 1064 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1123
            KG GV+  K+  F   DFVVE+ G++       E  D  +      +DP+   Y  Y + 
Sbjct: 35   KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 86

Query: 1124 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1182
                        VDA  + N   R I HS   NC+ K+  +DG   + +   R I  GEE
Sbjct: 87   LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 140

Query: 1183 ITFDYNSVTESKEE 1196
            + +DY   +++  E
Sbjct: 141  LLYDYGDRSKASIE 154


>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
            Clr4
 pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
            Clr4
          Length = 299

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 43/159 (27%)

Query: 1092 VWKWFEKQDGIRSLQKNNEDPAPEFYNIYL----------ERPKG-DADG----YDL--- 1133
            ++K  EK  G+RSL+     PA  F   YL          +R K  D DG    +DL   
Sbjct: 141  IFKTKEKGWGVRSLRFA---PAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMF 197

Query: 1134 -----VVVDAMHKANYASRICHSCRPNCEAKVTAVDGH-----YQIGIYTVRGIHYGEEI 1183
                   VDA +  + +    HSC PN  A  +AV  H     Y +  + ++ I   EE+
Sbjct: 198  DDASEYTVDAQNYGDVSRFFNHSCSPNI-AIYSAVRNHGFRTIYDLAFFAIKDIQPLEEL 256

Query: 1184 TFDYN-----SVTESKEEYEASV------CLCGSQVCRG 1211
            TFDY      S  +S++  +  +      C CGS  CRG
Sbjct: 257  TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRG 295


>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
            Histone Lysine Methyltransferase
 pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
            Lysine Methyltransferases
 pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
            Lysine Methyltransferases
          Length = 302

 Score = 39.7 bits (91), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 1136 VDAMHKANYASRICHSCRPNCEAKVTAVDGH-----YQIGIYTVRGIHYGEEITFDY-NS 1189
            VD  + +     I HSC PN  A    V  H     + + ++ ++ I  G E+TFDY N 
Sbjct: 212  VDGEYMSGPTRFINHSCDPN-MAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNG 270

Query: 1190 VT-------ESKEEYEASVCLCGSQVCRG 1211
            +T       +  +  E + CLCG+  CRG
Sbjct: 271  LTGLESDAHDPSKISEMTKCLCGTAKCRG 299


>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
            Crystal Structure Of Inactivated Prostaglandin H2
            Synthase
 pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
            Crystal Structure Of Inactivated Prostaglandin H2
            Synthase
          Length = 576

 Score = 34.3 bits (77), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 453  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 512


>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
            With Diclofenac
          Length = 553

 Score = 33.9 bits (76), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 446  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 505


>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
          Length = 551

 Score = 33.5 bits (75), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 445  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 504


>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
            Cyclooxygenase-1
 pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
            Cyclooxygenase-1
          Length = 600

 Score = 33.5 bits (75), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 477  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 536


>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
            Prostagladin H Synthase-1 That Forms Predominantly
            11-hpete
          Length = 600

 Score = 33.5 bits (75), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 477  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 536


>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
 pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
 pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
            Ibuprofen
 pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
            Ibuprofen
 pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
            Flurbiprofen
 pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
            Flurbiprofen
          Length = 580

 Score = 33.5 bits (75), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 457  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 516


>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
            P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
 pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
            P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
 pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
            1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
            (Iodoindomethacin), Cis Model
 pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
            1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
            (Iodoindomethacin), Cis Model
 pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
            1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
            (Iodoindomethacin), Trans Model
 pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
            1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
            (Iodoindomethacin), Trans Model
 pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In The
            Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
            Synthase-1.
 pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
            Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
            Synthase-1.
 pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
            Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
            Synthase-1
          Length = 576

 Score = 33.5 bits (75), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 453  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 512


>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
          Length = 281

 Score = 33.5 bits (75), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1132 DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGEEITFD 1186
            ++  +DA +  N +  I H C PN    V     H      +I  ++ R I  GEE+ FD
Sbjct: 183  EVYCIDARYYGNISRFINHLCDPN-IIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFD 241

Query: 1187 Y-NSVTESKEEYEASVCLCGSQVCRGS 1212
            Y +   + K +Y    C CGS+ C+ S
Sbjct: 242  YGDRFWDIKSKY--FTCQCGSEKCKHS 266


>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
            Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
 pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
            Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
 pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
            With An Inhibitor
 pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
            With An Inhibitor
          Length = 283

 Score = 33.1 bits (74), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1132 DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGEEITFD 1186
            ++  +DA +  N +  I H C PN    V     H      +I  ++ R I  GEE+ FD
Sbjct: 185  EVYCIDARYYGNISRFINHLCDPN-IIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFD 243

Query: 1187 Y-NSVTESKEEYEASVCLCGSQVCRGS 1212
            Y +   + K +Y    C CGS+ C+ S
Sbjct: 244  YGDRFWDIKSKY--FTCQCGSEKCKHS 268


>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
            Cyclooxygenase Active Site Of Pghs-1
 pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
            Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
            Acid
 pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
            Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
            Acid
 pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
            Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
            Complexed With Flurbiprofen
 pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
            Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
            Complexed With Flurbiprofen
 pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Celecoxib
 pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Celecoxib
 pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
 pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
 pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
            Heterodimer Mutant In Complex With Flurbiprofen
 pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Nimesulide
 pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Nimesulide
 pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
            With Diclofenac
 pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Flurbiprofen
 pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
            Flurbiprofen
          Length = 553

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 446  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 505


>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
            Prostaglandin H2 Synthase-1
 pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
            Prostaglandin H2 Synthase-1
          Length = 554

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 445  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 504


>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
            Heterodimer Mutant In Complex With Flurbiprofen
          Length = 553

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 446  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 505


>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
            With Methyl Ester Flurbiprofen
 pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
            With Methyl Ester Flurbiprofen
 pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
            With Alclofenac
 pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
            With Alclofenac
          Length = 551

 Score = 32.7 bits (73), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1212 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1267
            S+  LTGE      L+EL+G +D  +    L+LE C  NS+  E  +E+G       LLG
Sbjct: 445  SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 504


>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|HH Chain h, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 132

 Score = 32.3 bits (72), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 668 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 712
           V T E  +P V E+ EG   K ++IS G  +V+ D S++C  AI+A
Sbjct: 40  VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 84


>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
          Length = 137

 Score = 32.3 bits (72), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 668 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 712
           V T E  +P V E+ EG   K ++IS G  +V+ D S++C  AI+A
Sbjct: 45  VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 89


>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|Q Chain Q, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|Z Chain Z, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|3FKS|H Chain H, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|Q Chain Q, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|Z Chain Z, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|2WPD|H Chain H, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|3OEE|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEH|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OFN|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3ZRY|H Chain H, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZIA|H Chain H, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|R Chain R, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
          Length = 138

 Score = 32.3 bits (72), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 668 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 712
           V T E  +P V E+ EG   K ++IS G  +V+ D S++C  AI+A
Sbjct: 46  VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 90


>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
          Length = 160

 Score = 32.3 bits (72), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 668 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 712
           V T E  +P V E+ EG   K ++IS G  +V+ D S++C  AI+A
Sbjct: 68  VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 112


>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
 pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
 pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
            Histone Methyltransferase 1 In Complex With Sah And
            Dimethylated H3k9 Peptide
 pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
            Histone Methyltransferase 1 In Complex With Sah And
            Dimethylated H3k9 Peptide
 pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E11
 pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E11
 pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E67
 pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E67
 pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E67
 pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E67
 pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E72
 pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E72
 pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E72
 pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
            Inhibitor E72
 pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
            Dnmt3ak44me2 Peptide
 pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
            Dnmt3ak44me2 Peptide
 pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
            Dnmt3ak44me0 Peptide
 pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
            Dnmt3ak44me0 Peptide
          Length = 285

 Score = 32.3 bits (72), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 1127 DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGE 1181
            + DG ++  +DA    N +  I H C PN    V     H      +I  ++ R I  GE
Sbjct: 198  NKDG-EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 255

Query: 1182 EITFDYNSVTESKEEYEASVCLCGSQVCRGS 1212
            ++ FDY       +    S C CGS  CR S
Sbjct: 256  QLGFDYGERFWDIKGKLFS-CRCGSPKCRHS 285


>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
            Histone Methyltransferase 1 In Complex With Sah And Mono-
            Methylated H3k9 Peptide
 pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
            Histone Methyltransferase 1 In Complex With Sah And Mono-
            Methylated H3k9 Peptide
          Length = 287

 Score = 32.0 bits (71), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 1132 DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGEEITFD 1186
            ++  +DA    N +  I H C PN    V     H      +I  ++ R I  GE++ FD
Sbjct: 204  EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFD 262

Query: 1187 YNSVTESKEEYEASVCLCGSQVCRGS 1212
            Y       +    S C CGS  CR S
Sbjct: 263  YGERFWDIKGKLFS-CRCGSPKCRHS 287


>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
            01294
 pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
            01294
          Length = 261

 Score = 31.6 bits (70), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 1127 DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGE 1181
            + DG ++  +DA    N +  I H C PN    V     H      +I  ++ R I  GE
Sbjct: 174  NKDG-EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 231

Query: 1182 EITFDYNSVTESKEEYEASVCLCGSQVCRGS 1212
            ++ FDY       +    S C CGS  CR S
Sbjct: 232  QLGFDYGERFWDIKGKLFS-CRCGSPKCRHS 261


>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
            Histone-Lysine N-Methyltransferase Setmar
          Length = 290

 Score = 31.2 bits (69), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 1136 VDAMHKANYASRICHSCRPNCEAKVTAVDGHY-QIGIYTVRGIHYGEEITFDYN------ 1188
            VD  +  N    + HSC PN       +D    ++ ++  + I   EE+++DY+      
Sbjct: 197  VDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNL 256

Query: 1189 SVTESKEEYEAS----VCLCGSQVC 1209
            +V+ SKE  +       C CG++ C
Sbjct: 257  TVSASKERLDHGKLRKPCYCGAKSC 281


>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20 Homolog
            2
          Length = 247

 Score = 30.4 bits (67), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 1145 ASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNS--VTESKEEYEASVC 1202
            A+ I H C+PNC  K    DG+    +  +R I  G+E+T  Y      E  E  E   C
Sbjct: 177  AAFINHDCKPNC--KFVPADGNAAC-VKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTC 233

Query: 1203 LCGSQVCRGSYLNLTGEGAFEKVLKE 1228
                           GEGAF    +E
Sbjct: 234  ------------ERKGEGAFRTRPRE 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,920,210
Number of Sequences: 62578
Number of extensions: 1967722
Number of successful extensions: 4813
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4780
Number of HSP's gapped (non-prelim): 36
length of query: 1618
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1506
effective length of database: 7,964,601
effective search space: 11994689106
effective search space used: 11994689106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)