Query 000359
Match_columns 1618
No_of_seqs 352 out of 1606
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 4.6E-70 1E-74 674.0 15.2 850 29-1213 153-1004(1005)
2 KOG4442 Clathrin coat binding 100.0 2.7E-39 5.9E-44 383.1 12.8 172 1023-1221 93-267 (729)
3 KOG1082 Histone H3 (Lys9) meth 100.0 1.6E-30 3.5E-35 298.4 12.7 269 900-1214 55-354 (364)
4 KOG1079 Transcriptional repres 99.8 3.4E-21 7.3E-26 229.2 10.5 161 1006-1193 536-714 (739)
5 smart00317 SET SET (Su(var)3-9 99.8 1.9E-20 4.2E-25 175.8 12.5 113 1058-1187 4-116 (116)
6 KOG1141 Predicted histone meth 99.8 9.9E-21 2.1E-25 226.4 9.8 184 1024-1214 981-1262(1262)
7 KOG1083 Putative transcription 99.8 2.2E-21 4.7E-26 237.0 3.8 122 1054-1193 1178-1299(1306)
8 KOG1085 Predicted methyltransf 99.6 7.4E-16 1.6E-20 170.7 8.8 115 1062-1190 264-379 (392)
9 COG2940 Proteins containing SE 99.5 3.4E-15 7.3E-20 177.8 3.8 142 1055-1213 333-479 (480)
10 PF00856 SET: SET domain; Int 99.4 6.2E-13 1.3E-17 129.3 5.9 54 1135-1188 109-162 (162)
11 KOG1081 Transcription factor N 98.9 5E-10 1.1E-14 134.1 1.5 123 1069-1218 319-441 (463)
12 KOG2589 Histone tail methylase 98.6 5.1E-08 1.1E-12 112.4 5.5 120 1063-1211 136-255 (453)
13 PF14237 DUF4339: Domain of un 97.6 4E-05 8.6E-10 65.5 3.5 45 218-263 1-45 (45)
14 KOG1141 Predicted histone meth 97.6 2E-05 4.4E-10 97.6 0.6 135 940-1092 694-835 (1262)
15 KOG2461 Transcription factor B 96.7 0.0016 3.4E-08 78.1 4.6 104 1063-1192 39-147 (396)
16 PF02213 GYF: GYF domain; Int 96.2 0.0029 6.2E-08 56.9 2.2 48 218-265 2-53 (57)
17 cd00072 GYF GYF domain: contai 96.0 0.0079 1.7E-07 54.6 4.1 50 218-267 3-53 (57)
18 PF12937 F-box-like: F-box-lik 95.1 0.012 2.6E-07 50.1 1.8 36 428-465 1-36 (47)
19 smart00508 PostSET Cysteine-ri 92.6 0.056 1.2E-06 42.9 1.2 16 1199-1214 2-17 (26)
20 smart00444 GYF Contains conser 90.9 0.26 5.5E-06 44.9 3.6 40 218-257 2-41 (56)
21 PF05033 Pre-SET: Pre-SET moti 89.9 0.11 2.4E-06 50.9 0.4 81 939-1039 17-103 (103)
22 smart00468 PreSET N-terminal t 87.9 0.48 1E-05 46.5 3.3 55 908-977 2-61 (98)
23 smart00256 FBOX A Receptor for 86.3 0.58 1.3E-05 37.7 2.4 32 432-465 2-33 (41)
24 cd05529 Bromo_WDR9_I_like Brom 84.6 2.1 4.7E-05 44.5 6.2 60 656-717 27-108 (128)
25 KOG2997 F-box protein FBX9 [Ge 83.9 1.2 2.6E-05 53.0 4.5 41 425-465 104-147 (366)
26 KOG2084 Predicted histone tail 81.5 2.5 5.3E-05 50.2 6.0 43 1147-1193 208-251 (482)
27 PF00646 F-box: F-box domain; 81.1 0.89 1.9E-05 38.5 1.6 36 428-465 3-38 (48)
28 cd05512 Bromo_brd1_like Bromod 79.5 5.2 0.00011 40.0 6.5 74 654-739 2-93 (98)
29 KOG4341 F-box protein containi 78.5 1.1 2.3E-05 55.1 1.7 115 420-543 65-209 (483)
30 cd05513 Bromo_brd7_like Bromod 77.3 6.1 0.00013 39.7 6.3 72 655-738 3-92 (98)
31 PF00439 Bromodomain: Bromodom 71.2 3.6 7.7E-05 38.5 2.9 38 678-717 39-76 (84)
32 cd05511 Bromo_TFIID Bromodomai 67.4 13 0.00027 38.2 6.0 57 658-716 5-79 (112)
33 KOG1947 Leucine rich repeat pr 67.3 6.4 0.00014 46.3 4.5 64 473-539 247-310 (482)
34 cd04369 Bromodomain Bromodomai 64.2 8 0.00017 36.1 3.7 36 679-716 46-81 (99)
35 smart00297 BROMO bromo domain. 63.8 21 0.00046 34.9 6.7 66 650-717 4-87 (107)
36 cd05528 Bromo_AAA Bromodomain; 62.7 20 0.00043 36.9 6.4 60 655-716 5-82 (112)
37 cd05507 Bromo_brd8_like Bromod 62.1 20 0.00043 36.2 6.2 61 653-715 3-81 (104)
38 cd05500 Bromo_BDF1_2_I Bromodo 62.0 21 0.00046 35.7 6.4 60 655-716 6-85 (103)
39 cd05497 Bromo_Brdt_I_like Brom 60.2 26 0.00056 35.7 6.7 72 654-737 6-97 (107)
40 KOG1337 N-methyltransferase [G 59.9 5.8 0.00013 49.0 2.5 40 1147-1189 239-278 (472)
41 cd05505 Bromo_WSTF_like Bromod 53.3 34 0.00074 34.4 6.1 70 657-738 4-91 (97)
42 cd05503 Bromo_BAZ2A_B_like Bro 52.5 34 0.00073 34.0 5.9 59 656-716 3-79 (97)
43 cd05504 Bromo_Acf1_like Bromod 49.2 38 0.00083 34.9 5.9 60 656-717 15-92 (115)
44 cd05510 Bromo_SPT7_like Bromod 47.8 43 0.00094 34.6 6.0 35 678-714 51-85 (112)
45 cd05495 Bromo_cbp_like Bromodo 42.5 30 0.00066 35.2 4.0 37 678-716 49-85 (108)
46 cd05491 Bromo_TBP7_like Bromod 41.6 20 0.00042 37.9 2.5 39 673-713 62-100 (119)
47 cd05508 Bromo_RACK7 Bromodomai 41.2 73 0.0016 32.3 6.3 36 679-716 46-81 (99)
48 KOG1081 Transcription factor N 40.3 9.9 0.00021 47.5 0.2 130 1068-1216 130-266 (463)
49 PF01473 CW_binding_1: Putativ 37.9 20 0.00043 26.2 1.3 11 217-227 8-18 (19)
50 PF00560 LRR_1: Leucine Rich R 37.7 22 0.00049 26.6 1.6 21 525-546 1-21 (22)
51 KOG4341 F-box protein containi 35.6 28 0.00061 43.4 3.0 60 483-542 252-338 (483)
52 cd05525 Bromo_ASH1 Bromodomain 34.2 50 0.0011 33.7 4.0 38 678-717 51-88 (106)
53 cd05499 Bromo_BDF1_2_II Bromod 33.6 1.1E+02 0.0023 30.8 6.1 38 678-717 48-85 (102)
54 KOG3864 Uncharacterized conser 33.2 32 0.00069 39.6 2.7 56 483-538 108-165 (221)
55 PF12799 LRR_4: Leucine Rich r 32.9 41 0.00089 29.2 2.7 38 499-540 2-39 (44)
56 cd05509 Bromo_gcn5_like Bromod 32.6 94 0.002 30.9 5.5 59 657-717 5-81 (101)
57 cd05498 Bromo_Brdt_II_like Bro 32.5 58 0.0013 32.4 4.1 37 678-716 48-84 (102)
58 PF13855 LRR_8: Leucine rich r 31.6 31 0.00068 30.6 1.9 49 524-573 1-54 (61)
59 KOG1947 Leucine rich repeat pr 31.1 85 0.0018 37.2 5.8 109 427-536 167-281 (482)
60 cd05515 Bromo_polybromo_V Brom 27.3 78 0.0017 32.1 4.0 38 678-717 49-86 (105)
61 cd05496 Bromo_WDR9_II Bromodom 26.3 1.1E+02 0.0023 32.2 4.9 56 656-713 8-81 (119)
62 cd05518 Bromo_polybromo_IV Bro 25.7 94 0.002 31.6 4.3 38 678-717 49-86 (103)
63 PF02792 Mago_nashi: Mago nash 24.5 43 0.00094 36.4 1.7 23 437-460 116-138 (143)
64 cd05520 Bromo_polybromo_III Br 24.1 97 0.0021 31.5 4.0 38 678-717 49-86 (103)
65 cd05506 Bromo_plant1 Bromodoma 22.8 1.2E+02 0.0025 30.1 4.2 37 679-717 46-82 (99)
66 KOG1338 Uncharacterized conser 21.8 1.3E+02 0.0028 37.7 5.0 44 1143-1192 217-263 (466)
67 smart00367 LRR_CC Leucine-rich 21.8 70 0.0015 24.7 2.0 22 499-520 3-24 (26)
68 PF14878 DLD: Death-like domai 21.0 1.1E+02 0.0025 32.2 3.9 90 1271-1371 15-108 (115)
69 PF00856 SET: SET domain; Int 20.8 54 0.0012 32.4 1.5 16 1169-1184 2-17 (162)
70 KOG1789 Endocytosis protein RM 20.1 64 0.0014 44.1 2.2 35 216-250 955-989 (2235)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.6e-70 Score=674.05 Aligned_cols=850 Identities=28% Similarity=0.295 Sum_probs=657.5
Q ss_pred ccccCCCcccCChhhhcccccceEEecCCcccccCCCCCCCCCCcccCCCccccCCCCCCCCCCccccCCCCCCCCCCCC
Q 000359 29 WSCKGGDWKRNDEAAQDRCSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLYYPSHSRRLDLPPWAYACPDERNDGSGGS 108 (1618)
Q Consensus 29 w~~kggdw~~~~~~~q~~~~~~k~vl~~g~~lc~~~~~~~~dpr~~~~~~~~~~~~~~~~~lp~wa~~~~~~~~~~~~~~ 108 (1618)
|+| .+-++.+|+|+. .+|+|+|+|||.+++..++.+.|+.+.+++++..+.+...+.||+..-++++
T Consensus 153 ~~~-----~~~~~~s~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~------ 219 (1005)
T KOG1080|consen 153 VSC-----IDYWEASQDRYD--EIVANDGMPLKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQ------ 219 (1005)
T ss_pred cch-----hhhhhcccCccc--ceeeccCCcCcccccccccccCcccccchhhhcccccCCcccccceeehhhc------
Confidence 888 888889999999 9999999999999999999999999999999999999999999998755542
Q ss_pred CccccccccccccccccceeEeeeeeeecCCCCccccCccccccCcCCCCCccCccccccccccCccccccccccccCCC
Q 000359 109 RSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQD 188 (1618)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~s~~~~~~~~~~~~~~ 188 (1618)
.++||+.+-+|+|.-+..|.+.+...-.....+.++..|++++..+.+....+.++......+++-+..-+.
T Consensus 220 --------~~~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 291 (1005)
T KOG1080|consen 220 --------APRGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQALEEAGLA 291 (1005)
T ss_pred --------chhhhhccCcchhhhheeeeccCCccccchhhhhhccccccchhhhhccccccccccCccchhHHHHHhhcc
Confidence 679999998898888888888887777788899999999999999999999998888888888888888889
Q ss_pred CCCcccccccccCCCCcccccccccccccceEEecCCCCCcCCCcHHHHHHHHhhcccccCcccccccCceeeecccccc
Q 000359 189 SQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLTFATE 268 (1618)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~t~~~lql~~gdW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~ssvfrk~d~~wvpv~~~~~ 268 (1618)
.|++|+-. +++++|+.|+|.+-|+++.|.||+++++++.++..|.+..+++||++.|+.|+|++.+..
T Consensus 292 e~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~ 359 (1005)
T KOG1080|consen 292 EQGNWKKD------------VDDAHLITGDSSATDSALSEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITK 359 (1005)
T ss_pred cccccccc------------ccchhhhcCCCccchhhhhccccccccccccccccCCccccccccCCCcccccccccccc
Confidence 99999976 899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccCCCccCCCCCCCCCCCCCccccccccccccccCCcccccccceeeeccchhHHHHHHHhcchHHHHHHHhhh
Q 000359 269 TSASTVRNHGEKIMPSGDSSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFIGYTRGKLHELVMKSYKNREFAAAINEVL 348 (1618)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~s~~fh~~hpqf~gyt~GklHelvmks~k~~~~a~~ine~l 348 (1618)
...-.++.......+.+. .++.....+....... ..+-..++.-|+++.+| +++++-
T Consensus 360 ~~~p~~~~~~~~~~~~~~-~~l~~k~~~~~~~s~~--~~g~~~~~~~~~~~~d~--------------------~~~~~c 416 (1005)
T KOG1080|consen 360 SPPPIAKSAKKTKALPPA-QGLLCKECSDETKSNQ--TCGICKRIWHSSDSGDW--------------------VRCDGC 416 (1005)
T ss_pred CCCCchhhccccCccccc-chhhhhhhhchhhccc--cccccceecccccccce--------------------eeeccc
Confidence 865554444444444444 3333333333322222 35667799999999999 789999
Q ss_pred cccccCCCCchhhhhhhhcCCCCccccccceeccccCCCCccchhhhh-cc-cCcchhhhhcCCCCcCCCCccccccccC
Q 000359 349 DPWINAKQPKKETEHVYRKSEGDTRAGKRARLLVRESDGDEETEEELQ-TI-QDESTFEDLCGDASFPGEESASSAIESG 426 (1618)
Q Consensus 349 d~Wi~~~qp~~e~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (1618)
|+||.+++++.+-+..=..+.. ..++ ..+- .-.+.-...+ -. +...+|+++++|.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~s~~---~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~d~~s~~~~-------------- 474 (1005)
T KOG1080|consen 417 DVWIHARCDKISSEKFKYSSSG---MHNY--QTLN---FPQEYTALNLSYCPKCKLTFDDLSTDLS-------------- 474 (1005)
T ss_pred ccceeeccCccccccccccccc---cccc--cccc---chhhhhhhhccccchhheecccccccCC--------------
Confidence 9999999988766522111100 0000 0000 0000001111 11 66677777777765
Q ss_pred ccccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHhhhcccceeeecCCCCCCchhHHHHHHHhhhcccccceeeec
Q 000359 427 GWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLV 506 (1618)
Q Consensus 427 ~w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~~~~~~~~~~~~ss~g~~ctd~~~~~~~~~y~~~~~~~~~l~ 506 (1618)
++++++|||.++.++|...+.+++||||-++.+-++..+++.|....+|.|+++....+|++|...+.+++++.
T Consensus 475 ------~~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~ 548 (1005)
T KOG1080|consen 475 ------PAALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKWVESRGRSIMNTYNSEKPKSIVLM 548 (1005)
T ss_pred ------cchheeeecccCcchhhhhcccchhhhhcccccccccccccccccccchhhhhhccccccccccccCCcchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHhCCCcceEeeccccccccccccCCccceeecccccCcccCCcchhhhhhhhhcccCCCCCCCCCC
Q 000359 507 GCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALKFPNINWVKSQKSRGAKFNDSRSKIRSLKQITEKSSSAPKSKGL 586 (1618)
Q Consensus 507 ~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1618)
+|+++...++.......|.++..++.+|.++.++.+.-.||.|+.++-.+.
T Consensus 549 ~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~----------------------------- 599 (1005)
T KOG1080|consen 549 GKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRS----------------------------- 599 (1005)
T ss_pred ccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeecccccc-----------------------------
Confidence 999999999999999999999999999999999999999999999874411
Q ss_pred CCCCCCcccchhhhhhcccccchhhhhhhhhhhccccccccccccccchhHHhhHhhhhhcchhhHHHHHHHHHHHHHHH
Q 000359 587 GDDMDDFGDLKDYFESVDKRDSANQSFRRSLYQRSKVFDARKSSSILSRDARMRRWSIKKSENGYKRMEEFLASSLKEIM 666 (1618)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1618)
-..+.+|+++.|+..++.+++++++ .|+|.+.+...++.++.++| +.|.|....+. .+||+++++-.+-.|
T Consensus 600 -~~s~~~g~~~~~~~~~~~~~~~~~~----~~~r~~~l~~~~g~al~p~d-~gr~~~~e~a~---~~~e~~~~~~~~~~p 670 (1005)
T KOG1080|consen 600 -VHSECYGNLKSYDGTSWVCDSCETL----DIKRSCCLCPVKGGALKPTD-EGRWVHVECAW---FRPEVCLASPERMEP 670 (1005)
T ss_pred -CCCcccccCCCCCCCcchhhccccc----cCCchhhhccccCcccCCCC-ccchhhhhchh---ccccccCCCccCCCC
Confidence 1147899999999999999999988 99999999999999999999 99999999998 899999999999999
Q ss_pred hhcccccccchhhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCCCCCcchhhHHHHHHHHHhhcccccchhhH
Q 000359 667 RVNTFEFFVPKVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKSSYYER 746 (1618)
Q Consensus 667 ~~~~~d~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1618)
+.+.++|+--++.+|=.- ||+-.--..+..+ .-.|..+-..+ ++.+.+|+.-... +
T Consensus 671 ~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~------------~~~~~a~~~~~-~~~~~~l~~~~~~---~ 726 (1005)
T KOG1080|consen 671 AVGTFKIPALSFLKICFI--------HGSCRQCCKCETG------------SHAMCASRAGY-IMEAVSLEEVSQQ---T 726 (1005)
T ss_pred cccccccCccchhhhccc--------cccccccchhhhc------------ceehhhcCccC-hhhhhhhhhhhhh---h
Confidence 999999988777665222 5443322221111 11233333344 4444444432111 1
Q ss_pred HHHHhhccCCCCCcccccchhhhhhhhhhhhhhhhccccCCCcccCCCCCcccccchHHHHHHhhhhcccccCCCCCCCc
Q 000359 747 EEMMKSWKDESPAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDREIRKRLSKLNRKSLDSGSETSD 826 (1618)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~s~~~~~~ 826 (1618)
-...+. +.. .-..-++.-+...+-.+.+..+++..+...+++-+++++++.+++|++++..+|+.++.|+.-..
T Consensus 727 ~~~~~~--~~~---~~d~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~- 800 (1005)
T KOG1080|consen 727 TSYVKE--DGP---GPDSVLKVNTPSGKFGAENLSQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCR- 800 (1005)
T ss_pred hhhhhh--ccC---CcccceeecCccccccccchhhhhhccccccccccccccccccccchhcccCCcccCcccccccc-
Confidence 111110 000 00111333333444445566666666666779999999999999999999999999888874332
Q ss_pred CCCCCCCCCCCCCccccccCccccccccCccccccCCCCCccCCCCCCccCccccccccccccCCCcccceeeeEEeeee
Q 000359 827 DLDGSSEDGKSDSESTVSDTDSDMDFRSDGRARESRGAGDFTTDEGLDFSDDREWGARMTKASLVPPVTRKYEVIDQYVI 906 (1618)
Q Consensus 827 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ga~mtk~~l~p~~t~ky~vI~~y~i 906 (1618)
.+ ..++++...+.++|+.+..+.+..+.......++ +.||. |+..++.-
T Consensus 801 -----~~-~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl~-------------q~rl~-a~~~~~~~----------- 849 (1005)
T KOG1080|consen 801 -----SE-SRSDNSKSPLAEESESDITSGGSSHDLSAEERLN-------------QFRLS-ASFTASFI----------- 849 (1005)
T ss_pred -----ch-hhcccccccccccccccccccccccchhHHhhhH-------------HHHhh-hhcccccc-----------
Confidence 22 2778888888888888888877776655544333 22222 11111111
Q ss_pred ccChHHHHHhhcccCchHHHHHhhhccCCCCccCCCccccccccccccCCCCcccccccccccccccccccCCCCccchh
Q 000359 907 VADEEDVRRKMRVSLPEDYAEKLNAQKNGSEELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPDELDWN 986 (1618)
Q Consensus 907 v~d~~ev~~km~v~l~~~y~~kl~~~~~gt~~~d~e~P~~~~Y~prkvlG~DV~Eqe~yGcDcYTr~~L~d~~P~el~W~ 986 (1618)
.|+.|+++.|++...+++
T Consensus 850 -~~~~~~~~~~~~~~rkk~------------------------------------------------------------- 867 (1005)
T KOG1080|consen 850 -LDEAEVLRYNQLKFRKKY------------------------------------------------------------- 867 (1005)
T ss_pred -cchHHHHHHHHHhhhhhh-------------------------------------------------------------
Confidence 788888888876665322
Q ss_pred hhhhchhhHHHHHHHHhhhccccCCCCCCCCCCCCcccccccCCcCccCCCchhhhcccccccccccCCCccccccCccc
Q 000359 987 LLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGL 1066 (1618)
Q Consensus 987 ~~~K~~FIek~LLktLnkqvr~~~G~g~tP~~c~ckPI~EC~~ccC~e~C~NRvvQ~c~~i~k~I~k~PleVFrT~~KGw 1066 (1618)
..| -++..+||
T Consensus 868 ----~~F-----------------------------------------------------------------~~s~iH~w 878 (1005)
T KOG1080|consen 868 ----VKF-----------------------------------------------------------------GRSGIHGW 878 (1005)
T ss_pred ----hcc-----------------------------------------------------------------cccccccc
Confidence 001 01225799
Q ss_pred eEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEccccCCCccc
Q 000359 1067 GVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYAS 1146 (1618)
Q Consensus 1067 GVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtrkGNiAR 1146 (1618)
||||.. +|.+|++|+||+||+|.+.= ..+|. ..|...+...-|.+-++. .++|||+++||+||
T Consensus 879 glfa~~--~i~~~dmViEY~Ge~vR~~i-----ad~RE-~~Y~~~gi~~sYlfrid~---------~~ViDAtk~gniAr 941 (1005)
T KOG1080|consen 879 GLFAME--NIAAGDMVIEYRGELVRSSI-----ADLRE-ARYERMGIGDSYLFRIDD---------EVVVDATKKGNIAR 941 (1005)
T ss_pred ceeecc--CccccceEEEeeceehhhhH-----HHHHH-HHHhccCcccceeeeccc---------ceEEeccccCchhh
Confidence 999995 69999999999999997521 12222 223334445555544432 38999999999999
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCccccccCceEEeCCCcccccc
Q 000359 1147 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSY 1213 (1618)
Q Consensus 1147 FINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~eskke~~~~~ClCGS~nCRG~i 1213 (1618)
||||||+|||++.++.|+|+.+|+|||.|+|.+||||||||.|..++. +.+|+|||++|||++
T Consensus 942 ~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~----kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 942 FINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD----KIPCLCGAPNCRGFL 1004 (1005)
T ss_pred eeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc----ccccccCCCcccccc
Confidence 999999999999999999999999999999999999999999988753 689999999999964
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-39 Score=383.07 Aligned_cols=172 Identities=27% Similarity=0.436 Sum_probs=149.9
Q ss_pred ccccccC--Cc-CccCCCchhhhcccccccccccCCCccccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhh
Q 000359 1023 PVIEEIE--KE-AVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQ 1099 (1618)
Q Consensus 1023 PI~EC~~--cc-C~e~C~NRvvQ~c~~i~k~I~k~PleVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~Erq 1099 (1618)
-.+||++ |. |+..|.|+-.|+++-. ++++|.|..|||||+|..+ |++|+||+||+||||+..+
T Consensus 93 t~iECs~~~C~~cg~~C~NQRFQkkqyA-------~vevF~Te~KG~GLRA~~d--I~~g~FI~EY~GEVI~~~E----- 158 (729)
T KOG4442|consen 93 TSIECSDRECPRCGVYCKNQRFQKKQYA-------KVEVFLTEKKGCGLRAEED--IPKGQFILEYIGEVIEEKE----- 158 (729)
T ss_pred hhcccCCccCCCccccccchhhhhhccC-------ceeEEEecCcccceeeccc--cCCCcEEeeeccccccHHH-----
Confidence 3588876 43 8899999888876433 7899999999999999976 9999999999999998544
Q ss_pred hhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEccccCCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCC
Q 000359 1100 DGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHY 1179 (1618)
Q Consensus 1100 eaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtrkGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIka 1179 (1618)
..++...|..++..+||+|+|... .+|||+.+||.||||||||+|||++++|.|+|..||||||.|.|.+
T Consensus 159 -f~kR~~~Y~~d~~kh~Yfm~L~~~---------e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~ 228 (729)
T KOG4442|consen 159 -FEKRVKRYAKDGIKHYYFMALQGG---------EYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKP 228 (729)
T ss_pred -HHHHHHHHHhcCCceEEEEEecCC---------ceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCC
Confidence 445566777888999999999853 7999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCccccccCceEEeCCCccccccccCCCchh
Q 000359 1180 GEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGA 1221 (1618)
Q Consensus 1180 GEELTFDYG~~~eskke~~~~~ClCGS~nCRG~iL~~~~e~a 1221 (1618)
||||||||++..++. .+++|+||+++|+|||++.+...+
T Consensus 229 GEEITFDYqf~rYGr---~AQ~CyCgeanC~G~IGgk~q~da 267 (729)
T KOG4442|consen 229 GEEITFDYQFDRYGR---DAQPCYCGEANCRGWIGGKPQTDA 267 (729)
T ss_pred CceeeEecccccccc---cccccccCCcccccccCCCCcccc
Confidence 999999999988654 468999999999999887755443
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.6e-30 Score=298.43 Aligned_cols=269 Identities=21% Similarity=0.240 Sum_probs=183.1
Q ss_pred eEEeeeeccChHHHHHhhcccCchHHHHHhhhccCCCCccCCCccccccccccccCCCC-cc-ccccccccccccccccc
Q 000359 900 VIDQYVIVADEEDVRRKMRVSLPEDYAEKLNAQKNGSEELDMELPEVKDYKPRKQLGDQ-VF-EQEVYGIDPYTHNLLLD 977 (1618)
Q Consensus 900 vI~~y~iv~d~~ev~~km~v~l~~~y~~kl~~~~~gt~~~d~e~P~~~~Y~prkvlG~D-V~-Eqe~yGcDcYTr~~L~d 977 (1618)
+.....+..|+...+..|.|++. .++|.+-|..++|+...++.++ +. .....||+|........
T Consensus 55 ~~~~~~~~~d~~~~~e~~~v~~~--------------n~id~~~~~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~ 120 (364)
T KOG1082|consen 55 KLEAKSELEDIALGSENLPVPLV--------------NRIDEDAPLYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVL 120 (364)
T ss_pred ccccccccccccCccccCceeee--------------eeccCCccccceeccccccCccccccCccccCCCccCCCCCCC
Confidence 34456677788888888877666 2456666666999999888873 33 56778898876544332
Q ss_pred C--CCCccchhhhhhchhhHHHHHHHHhhhccccCCCCCC-CCCCCCcccccccC-CcCccCCCchhhhccccccccccc
Q 000359 978 S--MPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTGTGNT-PMMYPLQPVIEEIE-KEAVDDCDVRTMKMCRGILKAMDS 1053 (1618)
Q Consensus 978 ~--~P~el~W~~~~K~~FIek~LLktLnkqvr~~~G~g~t-P~~c~ckPI~EC~~-ccC~e~C~NRvvQ~c~~i~k~I~k 1053 (1618)
. |+|. .+ |.....+..++.. .......+++||+. |.|...|.||++|.+. +
T Consensus 121 ~~~C~C~------~~------------n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~-------~ 175 (364)
T KOG1082|consen 121 PLTCLCE------RH------------NGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGL-------Q 175 (364)
T ss_pred CccccCh------Hh------------hCCccccccCCccccccccCccccccccCCCCCCcCcchhhcccc-------c
Confidence 2 4441 11 1111111111111 22334457899987 5699999999999883 4
Q ss_pred CCCccccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCC-------
Q 000359 1054 RPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKG------- 1126 (1618)
Q Consensus 1054 ~PleVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~g------- 1126 (1618)
.+++||++..+||||++... |++|+|||||+||+++..++..+... ..+..+. ...|...+.....
T Consensus 176 ~~leIfrt~~kGwgvRs~~~--I~~G~fvcEyaGe~~t~~e~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 248 (364)
T KOG1082|consen 176 FHLEVFRTPEKGWGVRTLDP--IPAGEFVCEYAGEVLTSEEAQRRTHL----REYLDDD-CDAYSIADREWVDESPVGNT 248 (364)
T ss_pred cceEEEecCCceeeeccccc--ccCCCeeEEEeeEecChHHhhhcccc----ccccccc-cccchhhhcccccccccccc
Confidence 57899999999999999964 99999999999999997654332110 0111111 1111111110000
Q ss_pred ------CCCCCceEEEccccCCCcccccCCCCCCCeEEEEEEECC----EEEEEEEEccCCCCCCeEEEecCCCCC----
Q 000359 1127 ------DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTE---- 1192 (1618)
Q Consensus 1127 ------D~dg~D~lvIDAtrkGNiARFINHSCdPNCevq~V~VdG----~pRIafFAlRDIkaGEELTFDYG~~~e---- 1192 (1618)
.......++|||...||++|||||||.||+.++.+..++ .++|+|||+++|.|||||||||+..+.
T Consensus 249 ~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~ 328 (364)
T KOG1082|consen 249 FVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQ 328 (364)
T ss_pred ccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccccccc
Confidence 001124599999999999999999999999999988875 699999999999999999999997642
Q ss_pred ccc----cccCceEEeCCCccccccc
Q 000359 1193 SKE----EYEASVCLCGSQVCRGSYL 1214 (1618)
Q Consensus 1193 skk----e~~~~~ClCGS~nCRG~iL 1214 (1618)
... ......|.||+.+||+.+.
T Consensus 329 ~~~~~~~~~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 329 DGANIYTPVMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred ccccccccccchhhcCCCHHhCcccC
Confidence 111 2346799999999999654
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.84 E-value=3.4e-21 Score=229.20 Aligned_cols=161 Identities=25% Similarity=0.322 Sum_probs=118.4
Q ss_pred ccccCCCCCCCCCCCCc------ccccccCC---cCc---------cCCCchhhhcccccccccccCCCccccccCccce
Q 000359 1006 VRHFTGTGNTPMMYPLQ------PVIEEIEK---EAV---------DDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLG 1067 (1618)
Q Consensus 1006 vr~~~G~g~tP~~c~ck------PI~EC~~c---cC~---------e~C~NRvvQ~c~~i~k~I~k~PleVFrT~~KGwG 1067 (1618)
-..|+||.| +..|..+ ..-||.+. +|+ -.|.|-.+|++... ++.+-.+..-|||
T Consensus 536 ~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qk-------r~llapSdVaGwG 607 (739)
T KOG1079|consen 536 RNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQK-------RVLLAPSDVAGWG 607 (739)
T ss_pred HhcCCCCCc-ccccccCcCchhhhccccCchHHhccCcccccccCccccccchhhhhhhc-------ceeechhhccccc
Confidence 346789887 5554432 23688752 243 26888777765432 2222233446999
Q ss_pred EEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEccccCCCcccc
Q 000359 1068 VVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASR 1147 (1618)
Q Consensus 1068 VFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtrkGNiARF 1147 (1618)
+|+.+ +..|++||.||+||+|+..| +.|+-..+.. +-..+|+....+ ++|||+++||.+||
T Consensus 608 lFlKe--~v~KnefisEY~GE~IS~dE------ADrRGkiYDr-----~~cSflFnln~d------yviDs~rkGnk~rF 668 (739)
T KOG1079|consen 608 LFLKE--SVSKNEFISEYTGEIISHDE------ADRRGKIYDR-----YMCSFLFNLNND------YVIDSTRKGNKIRF 668 (739)
T ss_pred eeecc--ccCCCceeeeecceeccchh------hhhccccccc-----ccceeeeecccc------ceEeeeeecchhhh
Confidence 99995 69999999999999999754 3333222211 112344544333 89999999999999
Q ss_pred cCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCc
Q 000359 1148 ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTES 1193 (1618)
Q Consensus 1148 INHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~es 1193 (1618)
+|||-+|||.+.++.|+|..||+|||.|.|.+||||||||.+..+.
T Consensus 669 ANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 669 ANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred ccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccc
Confidence 9999999999999999999999999999999999999999987764
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.84 E-value=1.9e-20 Score=175.81 Aligned_cols=113 Identities=34% Similarity=0.568 Sum_probs=88.1
Q ss_pred cccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEc
Q 000359 1058 KYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVD 1137 (1618)
Q Consensus 1058 VFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvID 1137 (1618)
++.+..+|+||+|+++ |++|++|++|.|+++...+..+.....+. ......|.+.... .++||
T Consensus 4 ~~~~~~~G~gl~a~~~--i~~g~~i~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------~~~id 66 (116)
T smart00317 4 VFKSPGKGWGVRATED--IPKGEFIGEYVGEIITSEEAEERSKAYDT------DGADSFYLFEIDS---------DLCID 66 (116)
T ss_pred EEecCCCcEEEEECCc--cCCCCEEEEEEeEEECHHHHHHHHHHHHh------cCCCCEEEEECCC---------CEEEe
Confidence 4555689999999986 99999999999999986543332211111 1111234333321 27999
Q ss_pred cccCCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEec
Q 000359 1138 AMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDY 1187 (1618)
Q Consensus 1138 AtrkGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDY 1187 (1618)
+...||++|||||||.|||.+..+..++..++.++|+|||++|||||+||
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999999999999999999999988888899999999999999999999
No 6
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.82 E-value=9.9e-21 Score=226.36 Aligned_cols=184 Identities=24% Similarity=0.385 Sum_probs=131.7
Q ss_pred cccccC-CcCccCCCchhhhcccccccccccCC-CccccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhh
Q 000359 1024 VIEEIE-KEAVDDCDVRTMKMCRGILKAMDSRP-DDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDG 1101 (1618)
Q Consensus 1024 I~EC~~-ccC~e~C~NRvvQ~c~~i~k~I~k~P-leVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~Erqea 1101 (1618)
.+||+. +.|...|.|++++.+.+...++.... +++|.+..-|||+++..| |+.-+|||+|+|...+..-. ..
T Consensus 981 f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD--~~~~~~~~~~~~~ppt~~l~----~~ 1054 (1262)
T KOG1141|consen 981 FFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTD--IPQSTFICTYVGAPPTDDLA----DE 1054 (1262)
T ss_pred ceeccccchhcccccchhhhcCCccceeeeeccccccccccccccccccccc--CCCCcccccccCCCCchhhH----HH
Confidence 478876 56888999999998777655544433 789999999999999976 99999999999998765211 11
Q ss_pred hhhhhccCC-----------------CCCCcc------ee------------e---------------------------
Q 000359 1102 IRSLQKNNE-----------------DPAPEF------YN------------I--------------------------- 1119 (1618)
Q Consensus 1102 iRrlq~~sk-----------------d~~~~f------Y~------------m--------------------------- 1119 (1618)
.|..++... +....| |. +
T Consensus 1055 ~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s 1134 (1262)
T KOG1141|consen 1055 LRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQS 1134 (1262)
T ss_pred HhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhh
Confidence 111111000 000000 00 0
Q ss_pred ------------------eccCCCCC--------CCC----CceEEEccccCCCcccccCCCCCCCeEEEEEEECC----
Q 000359 1120 ------------------YLERPKGD--------ADG----YDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDG---- 1165 (1618)
Q Consensus 1120 ------------------~L~r~~gD--------~dg----~D~lvIDAtrkGNiARFINHSCdPNCevq~V~VdG---- 1165 (1618)
++...++. .+. ...++|||...||++||+||||.||+.+|.|+|+.
T Consensus 1135 ~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlr 1214 (1262)
T KOG1141|consen 1135 KKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLR 1214 (1262)
T ss_pred hhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccC
Confidence 00000000 000 13489999999999999999999999999999986
Q ss_pred EEEEEEEEccCCCCCCeEEEecCCCCCccccccCceEEeCCCccccccc
Q 000359 1166 HYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYL 1214 (1618)
Q Consensus 1166 ~pRIafFAlRDIkaGEELTFDYG~~~eskke~~~~~ClCGS~nCRG~iL 1214 (1618)
.|.++|||.|-|++|+||||||++......+ ....|.||+.+|||++|
T Consensus 1215 fPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~-keL~C~CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1215 FPWVAFFTRKYVKAGTELTWDYQYEQGQVAT-KELTCHCGAENCRGRLL 1262 (1262)
T ss_pred CchhhhhhhhhhccCceeeeecccccccccc-ceEEEecChhhhhcccC
Confidence 5999999999999999999999987765433 34799999999999875
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.82 E-value=2.2e-21 Score=236.96 Aligned_cols=122 Identities=28% Similarity=0.558 Sum_probs=98.8
Q ss_pred CCCccccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCce
Q 000359 1054 RPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDL 1133 (1618)
Q Consensus 1054 ~PleVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~ 1133 (1618)
.++.+|+...+||||.+.. +|++|+||+||+|||++..+..++ + +..+ -...+.|.+.+..+
T Consensus 1178 p~L~v~~gp~~G~~v~tk~--PikagtfI~EYvGeVit~ke~e~~---m--mtl~--~~d~~~~cL~I~p~--------- 1239 (1306)
T KOG1083|consen 1178 PPLEVFRGPKKGWGVRTKE--PIKAGTFIMEYVGEVITEKEFEPR---M--MTLY--HNDDDHYCLVIDPG--------- 1239 (1306)
T ss_pred CCcceeccCCCCccccccc--cccccchHHHHHHHHHHHHhhccc---c--cccC--CCCCcccccccCcc---------
Confidence 3688999999999999995 699999999999999986543222 1 1111 11233454444432
Q ss_pred EEEccccCCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCc
Q 000359 1134 VVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTES 1193 (1618)
Q Consensus 1134 lvIDAtrkGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~es 1193 (1618)
.+||+.++||.+||+||||.|||++++|.|||.+|+++||+|||.+||||||||++..+.
T Consensus 1240 l~id~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~ 1299 (1306)
T KOG1083|consen 1240 LFIDIPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFN 1299 (1306)
T ss_pred ccCChhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccC
Confidence 799999999999999999999999999999999999999999999999999999986553
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.62 E-value=7.4e-16 Score=170.70 Aligned_cols=115 Identities=29% Similarity=0.427 Sum_probs=92.9
Q ss_pred cCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEcccc-
Q 000359 1062 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH- 1140 (1618)
Q Consensus 1062 ~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtr- 1140 (1618)
.+||.||+|... +++|+||.||.|.+|...+..+++ ..|..+.....|+.|+. +... .|||||+.
T Consensus 264 dgKGRGv~a~~~--F~rgdFVVEY~Gdliei~eAk~rE------~~Ya~De~~GcYMYyF~-h~sk-----~yCiDAT~e 329 (392)
T KOG1085|consen 264 DGKGRGVRAKVN--FERGDFVVEYRGDLIEISEAKVRE------EQYANDEEIGCYMYYFE-HNSK-----KYCIDATKE 329 (392)
T ss_pred ccccceeEeecc--cccCceEEEEecceeeechHHHHH------HHhccCcccceEEEeee-ccCe-----eeeeecccc
Confidence 369999999975 999999999999999765543333 23444555566644443 3222 39999977
Q ss_pred CCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCC
Q 000359 1141 KANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSV 1190 (1618)
Q Consensus 1141 kGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~ 1190 (1618)
.+-++|.||||-.+||.+..+.++|.|++.++|.|||.+||||+||||..
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 46679999999999999999999999999999999999999999999964
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.53 E-value=3.4e-15 Score=177.83 Aligned_cols=142 Identities=30% Similarity=0.499 Sum_probs=106.2
Q ss_pred CCccccccCccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceE
Q 000359 1055 PDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLV 1134 (1618)
Q Consensus 1055 PleVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~l 1134 (1618)
+..+.....+|+||||.. .|++|++|.+|.|+++...+... +. ..+.. ....+.+.+.... ..
T Consensus 333 ~~~~~~~~~~~~g~fa~~--~i~~~e~i~~~~~~~~~~~~~~~-----~~-~~~~~--~~~~~~~~~~~~~-------~~ 395 (480)
T COG2940 333 PNVVQESEIKGYGVFALE--SIKKGEFIIEYHGEIIRRKEARE-----RE-ENYDL--LGNEFSFGLLEDK-------DK 395 (480)
T ss_pred hhhhhhhcccccceeehh--hccchHHHHHhcCcccchHHHHh-----hh-ccccc--cccccchhhcccc-------ch
Confidence 444555667899999996 49999999999999987432111 11 11111 1111122222211 27
Q ss_pred EEccccCCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCccc-----cccCceEEeCCCcc
Q 000359 1135 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKE-----EYEASVCLCGSQVC 1209 (1618)
Q Consensus 1135 vIDAtrkGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~eskk-----e~~~~~ClCGS~nC 1209 (1618)
++|+...|+++||+||||.|||......++|..++.++|+|||.+|||||+||+...+... ......|.||+..|
T Consensus 396 ~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (480)
T COG2940 396 VRDSQKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRC 475 (480)
T ss_pred hhhhhhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCcc
Confidence 9999999999999999999999999888888889999999999999999999998876532 11357999999999
Q ss_pred cccc
Q 000359 1210 RGSY 1213 (1618)
Q Consensus 1210 RG~i 1213 (1618)
++++
T Consensus 476 ~~~~ 479 (480)
T COG2940 476 SHTM 479 (480)
T ss_pred CCCC
Confidence 9975
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.36 E-value=6.2e-13 Score=129.29 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=45.6
Q ss_pred EEccccCCCcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecC
Q 000359 1135 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYN 1188 (1618)
Q Consensus 1135 vIDAtrkGNiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG 1188 (1618)
..++.....++.|+||||.|||.+......+...+.|.|.|+|++|||||++||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 455666778999999999999999887666677999999999999999999997
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.87 E-value=5e-10 Score=134.13 Aligned_cols=123 Identities=30% Similarity=0.559 Sum_probs=95.1
Q ss_pred EeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEccccCCCccccc
Q 000359 1069 VCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRI 1148 (1618)
Q Consensus 1069 FA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtrkGNiARFI 1148 (1618)
+|..+ |.+| +|++++..++.-+ +.........++|..++..+ ..||+..+||.+||+
T Consensus 319 ~~~~~--~~k~------vg~~i~~~e~~~~------~~~~~~~~~~~~~~~~~e~~---------~~id~~~~~n~sr~~ 375 (463)
T KOG1081|consen 319 TAKAD--IRKG------VGEVIDDKECKAR------LQRVKESDLVDFYMVFIQKD---------RIIDAGPKGNYSRFL 375 (463)
T ss_pred hhHHh--hhcc------cCcccchhhheee------hhhhhccchhhhhhhhhhcc---------cccccccccchhhhh
Confidence 55554 8888 9999986543222 22222334455664444432 289999999999999
Q ss_pred CCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCccccccCceEEeCCCccccccccCCC
Q 000359 1149 CHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTG 1218 (1618)
Q Consensus 1149 NHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~eskke~~~~~ClCGS~nCRG~iL~~~~ 1218 (1618)
||||+|||+...+.+.+..++++||.+.|++||||||+|+..-.. ....|.||+.+|.++++...-
T Consensus 376 nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~----~~~~~~~~~e~~~~~~~k~~~ 441 (463)
T KOG1081|consen 376 NHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEG----NEKRCCCGSENCTETKGKKKK 441 (463)
T ss_pred cccCCCceeechhheecccccccccccccccchhhhheeeccccC----CcceEeecccccccCCccccc
Confidence 999999999999999999999999999999999999999987543 457999999999997654433
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.57 E-value=5.1e-08 Score=112.37 Aligned_cols=120 Identities=27% Similarity=0.403 Sum_probs=84.4
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEccccCC
Q 000359 1063 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKA 1142 (1618)
Q Consensus 1063 ~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtrkG 1142 (1618)
..|--|++++. |.+|+-|--.+|-|+.-.+..|.. +.. .+..+|-.||-.+-.- |...=
T Consensus 136 ~~gAkivst~~--w~~ndkIe~LvGcIaeLse~eE~~-----ll~---~g~nDFSvmyStRk~c-----------aqLwL 194 (453)
T KOG2589|consen 136 QNGAKIVSTKS--WSRNDKIELLVGCIAELSEAEERS-----LLR---GGGNDFSVMYSTRKRC-----------AQLWL 194 (453)
T ss_pred CCCceEEeecc--ccCCccHHHhhhhhhhcChhhhHH-----HHh---ccCCceeeeeecccch-----------hhhee
Confidence 45888999965 999999999999987543322211 111 2345666666544211 11222
Q ss_pred CcccccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCCccccccCceEEeCCCcccc
Q 000359 1143 NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1211 (1618)
Q Consensus 1143 NiARFINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~eskke~~~~~ClCGS~nCRG 1211 (1618)
..|+||||-|.|||+++. .|.-++.+-++|||+||||||.=||..++..+ ...|.| ..|-.
T Consensus 195 GPaafINHDCrpnCkFvs---~g~~tacvkvlRDIePGeEITcFYgs~fFG~~---N~~CeC--~TCER 255 (453)
T KOG2589|consen 195 GPAAFINHDCRPNCKFVS---TGRDTACVKVLRDIEPGEEITCFYGSGFFGEN---NEECEC--VTCER 255 (453)
T ss_pred ccHHhhcCCCCCCceeec---CCCceeeeehhhcCCCCceeEEeecccccCCC---CceeEE--eeccc
Confidence 568999999999999755 46678999999999999999999999998653 245666 45644
No 13
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=97.65 E-value=4e-05 Score=65.54 Aligned_cols=45 Identities=40% Similarity=0.789 Sum_probs=43.2
Q ss_pred ceEEecCCCCCcCCCcHHHHHHHHhhcccccCcccccccCceeeec
Q 000359 218 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPL 263 (1618)
Q Consensus 218 dW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~ssvfrk~d~~wvpv 263 (1618)
.|||.+ .|..+||||+.||..|+.+|.|.+.+-|.++--.-|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 599999 899999999999999999999999999999999999996
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.55 E-value=2e-05 Score=97.61 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCCccccccccccccCCCCcc----cccccccccccccccccCCCCccchhhhhhchhhHHHHHHHHhhhccccCCCCCC
Q 000359 940 DMELPEVKDYKPRKQLGDQVF----EQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTGTGNT 1015 (1618)
Q Consensus 940 d~e~P~~~~Y~prkvlG~DV~----Eqe~yGcDcYTr~~L~d~~P~el~W~~~~K~~FIek~LLktLnkqvr~~~G~g~t 1015 (1618)
|--.|++.-|...-+.|..++ -.-+-||||-+-. .+.++|- . |+...+....+-+..+.+-.|-...
T Consensus 694 ds~~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gc--id~~kca-c------hQltvk~~~t~p~~~v~~t~gykyK 764 (1262)
T KOG1141|consen 694 DSHRLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGC--IDSMKCA-C------HQLTVKKKTTGPNQNVASTNGYKYK 764 (1262)
T ss_pred cCcCCccchhheeeccCCCcccccChhhhhcCCCCcch--hhhhhhh-H------HHHHHHhhccCCCcccccCcchhhH
Confidence 333466667776666666555 3346688887643 2334441 1 1111111111112222111111000
Q ss_pred -CCCCCCcccccccC--CcCccCCCchhhhcccccccccccCCCccccccCccceEEeCccCCcCCCCEEEEEecEEecc
Q 000359 1016 -PMMYPLQPVIEEIE--KEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPV 1092 (1618)
Q Consensus 1016 -P~~c~ckPI~EC~~--ccC~e~C~NRvvQ~c~~i~k~I~k~PleVFrT~~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~ 1092 (1618)
-..|.-..++||+. .||+..|.||++|.+-.+ ++.+|.|..||||++|..+ |.+|.|||-|.|.+++.
T Consensus 765 Rl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qv-------Rlq~fkt~~kGWg~rcldd--i~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 765 RLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQV-------RLQRFKTIHKGWGRRCLDD--ITGGNFVCIYPGGALLH 835 (1262)
T ss_pred HHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCcee-------EeeeccccccccceEeeee--cCCceEEEEecchhhhh
Confidence 00122234689975 368999999999988655 4667888899999999986 99999999999999874
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=96.67 E-value=0.0016 Score=78.09 Aligned_cols=104 Identities=21% Similarity=0.160 Sum_probs=74.2
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCCCCcceeeeccCCCCCCCCCceEEEcccc--
Q 000359 1063 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH-- 1140 (1618)
Q Consensus 1063 ~KGwGVFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~~~~fY~m~L~r~~gD~dg~D~lvIDAtr-- 1140 (1618)
..|.||.+..- |++|+--+-|.||++... . .......|.-.++..+ ...++||++.
T Consensus 39 ~~~lgV~s~~~--i~~G~~FGP~~G~~~~~~----~-----------~~~~n~~y~W~I~~~d-----~~~~~iDg~d~~ 96 (396)
T KOG2461|consen 39 VTGLGVWSNAS--ILPGTSFGPFEGEIIASI----D-----------SKSANNRYMWEIFSSD-----NGYEYIDGTDEE 96 (396)
T ss_pred Ccccccccccc--ccCcccccCccCcccccc----c-----------cccccCcceEEEEeCC-----CceEEeccCChh
Confidence 35899999975 999999999999983210 0 0111233444444432 1248999964
Q ss_pred CCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCC
Q 000359 1141 KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1192 (1618)
Q Consensus 1141 kGNiARFINHSCd---PNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~e 1192 (1618)
..|+.||+|=.++ -|+.+ +...-.|-+.|+|+|.+||||-+.|+.++-
T Consensus 97 ~sNWmRYV~~Ar~~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 97 HSNWMRYVNSARSEEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred hcceeeeecccCChhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccchH
Confidence 7899999998885 47665 223447889999999999999999997764
No 16
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=96.19 E-value=0.0029 Score=56.88 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=38.2
Q ss_pred ceEEecCCCCCcCCCcHHHHHHHHhhcccccCcccccccC----ceeeeccc
Q 000359 218 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD----KVWVPLTF 265 (1618)
Q Consensus 218 dW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~ssvfrk~d----~~wvpv~~ 265 (1618)
.|+|+|..|..+||||-.++|.-..+|.+....-|.|..+ ..|+++..
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~ 53 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDR 53 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCG
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhh
Confidence 4999999999999999999999999999998777777644 45565543
No 17
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=96.00 E-value=0.0079 Score=54.59 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=43.0
Q ss_pred ceEEecCCCCCcCCCcHHHHHHHHhhcccccCcccccc-cCceeeeccccc
Q 000359 218 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRK-FDKVWVPLTFAT 267 (1618)
Q Consensus 218 dW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~ssvfrk-~d~~wvpv~~~~ 267 (1618)
-|+|+|-.|..|||||-++++.-..+|....+--|=|. .|.-|+|+....
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~~ 53 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDIL 53 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHHH
Confidence 39999999999999999999999999999976655555 567999987654
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=95.06 E-value=0.012 Score=50.10 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=30.5
Q ss_pred cccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh
Q 000359 428 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 428 w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
|..|--.+|..||.|| |.++|+-++.|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L--~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL--DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHC
Confidence 4567778999999999 89999999999999999983
No 19
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=92.64 E-value=0.056 Score=42.86 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=13.9
Q ss_pred CceEEeCCCccccccc
Q 000359 1199 ASVCLCGSQVCRGSYL 1214 (1618)
Q Consensus 1199 ~~~ClCGS~nCRG~iL 1214 (1618)
.+.|+|||++|||+|.
T Consensus 2 ~~~C~CGs~~CRG~l~ 17 (26)
T smart00508 2 KQPCLCGAPNCRGFLG 17 (26)
T ss_pred CeeeeCCCccccceec
Confidence 3789999999999874
No 20
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=90.93 E-value=0.26 Score=44.89 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=33.2
Q ss_pred ceEEecCCCCCcCCCcHHHHHHHHhhcccccCcccccccC
Q 000359 218 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD 257 (1618)
Q Consensus 218 dW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~ssvfrk~d 257 (1618)
-|+|+|-.|..+||||-+++|.-..+|.....--|=|..+
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~ 41 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNE 41 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCC
Confidence 3999999999999999999999999999976544434333
No 21
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=89.86 E-value=0.11 Score=50.87 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=34.8
Q ss_pred cCCCcc-ccccccccccCCCCc---ccccccccccccccc-cccCCCCccchhhhhhchhhHHHHHHHHhhhccccCCCC
Q 000359 939 LDMELP-EVKDYKPRKQLGDQV---FEQEVYGIDPYTHNL-LLDSMPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTGTG 1013 (1618)
Q Consensus 939 ~d~e~P-~~~~Y~prkvlG~DV---~Eqe~yGcDcYTr~~-L~d~~P~el~W~~~~K~~FIek~LLktLnkqvr~~~G~g 1013 (1618)
.|.+.| .-|+|++++++++.+ ......||+|-. .+ -...+++ ... ....| ....++.+.
T Consensus 17 vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~-~C~~~~~C~C---~~~-~~~~~-----~Y~~~g~l~------ 80 (103)
T PF05033_consen 17 VDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSG-DCSNPSNCEC---LQR-NGGIF-----AYDSNGRLR------ 80 (103)
T ss_dssp SSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SS-SSTCTTTSHH---HCC-TSSS------SB-TTSSBS------
T ss_pred CCCCCCCCCeEEeeeEEcCCCccccccccCccCccCC-CCCCCCCCcC---ccc-cCccc-----cccCCCcCc------
Confidence 555655 679999999999864 588888999943 22 1222222 111 10001 000011111
Q ss_pred CCCCCCCCcccccccC-CcCccCCCch
Q 000359 1014 NTPMMYPLQPVIEEIE-KEAVDDCDVR 1039 (1618)
Q Consensus 1014 ~tP~~c~ckPI~EC~~-ccC~e~C~NR 1039 (1618)
.....+++||+. |.|...|.||
T Consensus 81 ----~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 81 ----IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp ----SSSTSEEE---TTSSS-TTSTT-
T ss_pred ----cCCCCeEEeCCCCCCCCCCCCCC
Confidence 223568999987 5699999997
No 22
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=87.87 E-value=0.48 Score=46.45 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=38.5
Q ss_pred cChHHHHHhhcccCchHHHHHhhhccCCCCccCCCc-cccccccccccCCCCc----cccccccccccccccccc
Q 000359 908 ADEEDVRRKMRVSLPEDYAEKLNAQKNGSEELDMEL-PEVKDYKPRKQLGDQV----FEQEVYGIDPYTHNLLLD 977 (1618)
Q Consensus 908 ~d~~ev~~km~v~l~~~y~~kl~~~~~gt~~~d~e~-P~~~~Y~prkvlG~DV----~Eqe~yGcDcYTr~~L~d 977 (1618)
.|....++.++|.+. | ++|.+. |+-|+|+++.+.|++| .+....||+|.. .+...
T Consensus 2 ~Dis~G~E~~pI~~v-----------N---~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~-~C~~~ 61 (98)
T smart00468 2 LDISNGKENVPVPLV-----------N---EVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG-DCSSS 61 (98)
T ss_pred ccccCCccCCCcceE-----------e---cCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCC-CCCCC
Confidence 355555666666665 3 356654 5779999999999965 588889999876 44443
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=86.27 E-value=0.58 Score=37.73 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh
Q 000359 432 DGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 432 ~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
...++.+||-|| |.+.++-++.+||.|+++++
T Consensus 2 P~~ll~~I~~~l--~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 2 PDEILEEILSKL--PPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhc
Confidence 346789999888 45899999999999999985
No 24
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=84.56 E-value=2.1 Score=44.54 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH---hhccccccc---chh----------------hHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000359 656 EFLASSLKEIM---RVNTFEFFV---PKV----------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 713 (1618)
Q Consensus 656 ~~~~~~~~~~~---~~~~~d~~~---~~~----------------~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1618)
+.+...|+.|| ......+|. ++. ..|+.|+++|||.+ +..+..||..|++.|..+-
T Consensus 27 ~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~Li~~Na~~yN 104 (128)
T cd05529 27 ERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRS--LEALRHDVRLILSNAETFN 104 (128)
T ss_pred HHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 67788899999 666666665 322 57899999999987 7899999999999999985
Q ss_pred cCCC
Q 000359 714 NRGS 717 (1618)
Q Consensus 714 ~~~~ 717 (1618)
+.+.
T Consensus 105 ~~~s 108 (128)
T cd05529 105 EPNS 108 (128)
T ss_pred CCCC
Confidence 5553
No 25
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=83.90 E-value=1.2 Score=52.97 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=35.1
Q ss_pred cCccccccchHHHHHHHHHhh---hhhhhHHhhcchhhHHHHHh
Q 000359 425 SGGWGLLDGHTLAHVFHFLRS---DMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 425 ~~~w~~l~g~~l~r~fh~lr~---d~ksl~~~~~tc~~w~~~~~ 465 (1618)
..+-.-|--.+|+|||-.+-+ |+.||.-+|||||+|.-+++
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 333556888999999999876 88999999999999999876
No 26
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=81.50 E-value=2.5 Score=50.22 Aligned_cols=43 Identities=35% Similarity=0.562 Sum_probs=32.0
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCC-eEEEecCCCCCc
Q 000359 1147 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGE-EITFDYNSVTES 1193 (1618)
Q Consensus 1147 FINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGE-ELTFDYG~~~es 1193 (1618)
++||||.||+. +..++. ...+.+...+.+++ ||+..|.....+
T Consensus 208 ~~~hsC~pn~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGR-GLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECCc-eeEEEeecccCCCCCEEEEeecccccC
Confidence 89999999998 334453 44456667777766 999999977764
No 27
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=81.06 E-value=0.89 Score=38.48 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=28.3
Q ss_pred cccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh
Q 000359 428 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 428 w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
|.-|.-.++..||.+| |.++++..+.||++|+.++.
T Consensus 3 ~~~LP~~il~~Il~~l--~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 3 LSDLPDEILQEILSYL--DPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHT
T ss_pred HHHCCHHHHHHHHHHC--cHHHHHHHHHHhhHHHHHHc
Confidence 4556667899999887 78899999999999999885
No 28
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.45 E-value=5.2 Score=40.04 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhcccccccch------------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccC
Q 000359 654 MEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNR 715 (1618)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~d~~~~~------------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1618)
++++|..-|.+||+......|.-- +..|+.|+++|+|.+ +..+..|+..|+..|+.+-+.
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRT--LEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCCC
Confidence 578888899999998888888643 467999999999987 789999999999999988554
Q ss_pred CCCCCcchhhHHHHHHHHHhhccc
Q 000359 716 GSAGDMNRITTLFIQLATRLEQGA 739 (1618)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1618)
+. .+.+.|..|+.-
T Consensus 80 ~s----------~~~~~A~~l~~~ 93 (98)
T cd05512 80 DT----------IFYRAAVRLRDQ 93 (98)
T ss_pred CC----------HHHHHHHHHHHh
Confidence 43 335666666543
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=78.49 E-value=1.1 Score=55.07 Aligned_cols=115 Identities=26% Similarity=0.436 Sum_probs=78.5
Q ss_pred ccccccCccccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh---hhcccceeeecCCC------------CCCch
Q 000359 420 SSAIESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR---FYKGISRQVDLSSV------------GPNCT 484 (1618)
Q Consensus 420 ~~~~~~~~w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~---~~~~~~~~~~~ss~------------g~~ct 484 (1618)
-++-.+.+|.|.- .++.|||-|| |+|||-=++.-|+-|+--+- .|.. +||... -..|.
T Consensus 65 a~~~~~~~~~LPp-El~lkvFS~L--Dtksl~r~a~~c~~~n~~AlD~~~~q~----idL~t~~rDv~g~VV~~~~~Rcg 137 (483)
T KOG4341|consen 65 AADNNSISRSLPP-ELLLKVFSML--DTKSLCRAAQCCTMWNKLALDGSCWQH----IDLFTFQRDVDGGVVENMISRCG 137 (483)
T ss_pred hhhcccccccCCH-HHHHHHHHHH--hHHHHHHHHHHHHHhhhhhhcccccee----eehhcchhcCCCcceehHhhhhc
Confidence 4456677888764 6788999999 99999999999999986542 2222 222111 11121
Q ss_pred ---------------hHHHHHHHhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeecccccccccccc
Q 000359 485 ---------------DSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALK 543 (1618)
Q Consensus 485 ---------------d~~~~~~~~~y~~~~~~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~~~~~~ 543 (1618)
|+-++. ++-+=-||.-|-|.||++||..-+..+-+-++.|.+|++-+|+..-++.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 222222 222345677778888888888888888888888888888888887776665
No 30
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=77.30 E-value=6.1 Score=39.71 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcccccccch------------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 655 EEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 655 ~~~~~~~~~~~~~~~~~d~~~~~------------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
.+.|..-|.++|+.....+|.-- ...|+.|+++|+|.+ +..+.+||..|+..|.++-+.+
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQS--IEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 45666778889988888887632 367899999999976 8899999999999999985544
Q ss_pred CCCCcchhhHHHHHHHHHhhcc
Q 000359 717 SAGDMNRITTLFIQLATRLEQG 738 (1618)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~ 738 (1618)
. .+.+.|.+|.+
T Consensus 81 s----------~~~~~A~~L~~ 92 (98)
T cd05513 81 T----------IYYKAAKKLLH 92 (98)
T ss_pred C----------HHHHHHHHHHH
Confidence 3 33556666643
No 31
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=71.25 E-value=3.6 Score=38.53 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=33.3
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
+..|..|+++|+|.+ +..+..|+.+|++.|+.+.+.++
T Consensus 39 L~~I~~kl~~~~Y~s--~~~f~~Dv~~i~~Na~~yn~~~s 76 (84)
T PF00439_consen 39 LSTIRKKLENGKYKS--IEEFEADVRLIFQNARRYNPPDS 76 (84)
T ss_dssp HHHHHHHHHTTSSSS--HHHHHHHHHHHHHHHHHHSCTTS
T ss_pred hhhhhHHhhccchhh--HHHHHHHHHHHHHHHHHHCCCcC
Confidence 457999999999986 88999999999999999866554
No 32
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=67.38 E-value=13 Score=38.16 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcccccccchh------------------hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 658 LASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 658 ~~~~~~~~~~~~~~d~~~~~~------------------~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
|.--+.+||+...+..|+-.| ..|+.++++|+|.+ ...+..|+..|+..|..+-+.+
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~~~ 79 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQS--REEFLEDIELIVDNSVLYNGPD 79 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 444556677766666665433 67999999999976 6889999999999998875544
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=67.34 E-value=6.4 Score=46.31 Aligned_cols=64 Identities=28% Similarity=0.477 Sum_probs=49.8
Q ss_pred eeecCCCCCCchhHHHHHHHhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeecccccccc
Q 000359 473 QVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGE 539 (1618)
Q Consensus 473 ~~~~ss~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~~ 539 (1618)
.+||+.-+. .||..+..+.+. =-+++.+-|.+|.++|...|..|...+|.|.+++|.+|.++.+
T Consensus 247 ~l~l~~~~~-isd~~l~~l~~~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 247 SLDLSGCGL-VTDIGLSALASR--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred ccchhhhhc-cCchhHHHHHhh--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 344443332 788888877765 2378888888999999999999999999999999999998733
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=64.22 E-value=8 Score=36.14 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.9
Q ss_pred hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 679 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 679 ~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
..|+.|+++|+|. ....+.+||..|+..|+.+.+.+
T Consensus 46 ~~I~~kl~~~~Y~--s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 46 STIKKKLKNGEYK--SLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 6799999999995 67889999999999999986666
No 35
>smart00297 BROMO bromo domain.
Probab=63.81 E-value=21 Score=34.88 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccc------------------hhhHHHhhhccccccccCCcchhhhHHHHHHHHHH
Q 000359 650 GYKRMEEFLASSLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIK 711 (1618)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~d~~~~------------------~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 711 (1618)
..+++...+..-+..+++.-....|.- -...|+.|+++|+|.+ +..+..|+..|...|+.
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s--~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSS--VEEFVADVQLMFSNAKT 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHH
Confidence 456777777777778777655555552 1357899999999954 78899999999999999
Q ss_pred hccCCC
Q 000359 712 AKNRGS 717 (1618)
Q Consensus 712 ~~~~~~ 717 (1618)
+-+.+.
T Consensus 82 ~n~~~s 87 (107)
T smart00297 82 YNGPDS 87 (107)
T ss_pred HCCCCC
Confidence 855443
No 36
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=62.74 E-value=20 Score=36.93 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhcccccccchh------------------hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 655 EEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 655 ~~~~~~~~~~~~~~~~~d~~~~~~------------------~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
--+|..-|..||+.-.+..|.-.| ..|+.|+++|+|.+ ...+..||..|+..|..+-+.+
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLT--AKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 346777888888877777776544 56889999999975 6789999999999999985443
No 37
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=62.06 E-value=20 Score=36.16 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhcccccccchh------------------hHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000359 653 RMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 714 (1618)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~d~~~~~~------------------~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1618)
-+.+.+..-|..||+......|.=.| ..|+.|+++|+|.+ +..++.|+..|+..|+.+-+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRS--TAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 35678888899999887777776333 56999999999964 78899999999999998744
Q ss_pred C
Q 000359 715 R 715 (1618)
Q Consensus 715 ~ 715 (1618)
.
T Consensus 81 ~ 81 (104)
T cd05507 81 S 81 (104)
T ss_pred C
Confidence 3
No 38
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=62.00 E-value=21 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.423 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhccccccc----ch----------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000359 655 EEFLASSLKEIMRVNTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 714 (1618)
Q Consensus 655 ~~~~~~~~~~~~~~~~~d~~~----~~----------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1618)
.+|+..-|+.||+.-...-|. |. +..|+.|+++|.|. -...+..||..|...|..+-+
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~--s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYT--SVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 367778889999886666665 22 46799999999994 568899999999999999855
Q ss_pred CC
Q 000359 715 RG 716 (1618)
Q Consensus 715 ~~ 716 (1618)
.+
T Consensus 84 ~~ 85 (103)
T cd05500 84 PE 85 (103)
T ss_pred CC
Confidence 44
No 39
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.18 E-value=26 Score=35.71 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhccccccc----ch----------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000359 654 MEEFLASSLKEIMRVNTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 713 (1618)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~d~~~----~~----------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1618)
+..++..-|.+||+......|. |+ ...|+.|+++|+|.+ ...+..|+..|+..|..+-
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWS--ASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 4445556688888877666664 21 367999999999975 4589999999999999985
Q ss_pred cCCCCCCcchhhHHHHHHHHHhhc
Q 000359 714 NRGSAGDMNRITTLFIQLATRLEQ 737 (1618)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1618)
+.++ .|.++|..|+
T Consensus 84 ~~~s----------~i~~~A~~l~ 97 (107)
T cd05497 84 KPGD----------DVVLMAQTLE 97 (107)
T ss_pred CCCC----------HHHHHHHHHH
Confidence 5443 2345666555
No 40
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=59.89 E-value=5.8 Score=48.99 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCC
Q 000359 1147 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNS 1189 (1618)
Q Consensus 1147 FINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~ 1189 (1618)
+.||+|++. . ..+..-...+-+++.++|.+||||.++||.
T Consensus 239 ~~NH~~~~~-~--~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI-K--AGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc-c--ccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 679999992 1 111112338999999999999999999997
No 41
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=53.28 E-value=34 Score=34.37 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcccccccchh------------------hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCCC
Q 000359 657 FLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGSA 718 (1618)
Q Consensus 657 ~~~~~~~~~~~~~~~d~~~~~~------------------~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1618)
+...-|.+||+.-....|.-.| .-|+.|+++|.|.+- ....+|+..|...|.++-+.+.
T Consensus 4 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~--~ef~~D~~li~~Na~~yN~~~s- 80 (97)
T cd05505 4 KCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSV--QEFLDDMKLVFSNAEKYYENGS- 80 (97)
T ss_pred HHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCH--HHHHHHHHHHHHHHHHHCCCCC-
Confidence 4455677788765555555333 578999999999774 7889999999999999865554
Q ss_pred CCcchhhHHHHHHHHHhhcc
Q 000359 719 GDMNRITTLFIQLATRLEQG 738 (1618)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~ 738 (1618)
.|.++|..|+.
T Consensus 81 ---------~i~~~a~~le~ 91 (97)
T cd05505 81 ---------YVLSCMRKTEQ 91 (97)
T ss_pred ---------HHHHHHHHHHH
Confidence 34667776653
No 42
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=52.51 E-value=34 Score=34.05 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcccccccch------------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 656 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 656 ~~~~~~~~~~~~~~~~d~~~~~------------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
.|...-|.+||+....+.|+-. +..|+.|+++|+|.+ .....+|+..|...|.++-+-+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKT--LEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 3566778888888888877622 367999999999954 5788999999999999985543
No 43
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=49.20 E-value=38 Score=34.93 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcccccccch------------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 656 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 656 ~~~~~~~~~~~~~~~~d~~~~~------------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
+++..-|.+||+......|+=. +..|+.++++|+|.+ +..+..|+..|...|..+-+.++
T Consensus 15 ~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s--~~~f~~Dv~LI~~Na~~yN~~~s 92 (115)
T cd05504 15 SALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKL--AEEFLSDIQLVFSNCFLYNPEHT 92 (115)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 5677778888887666666422 367899999999976 66899999999999999865554
No 44
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.84 E-value=43 Score=34.56 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=30.9
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 714 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1618)
+..|+.++++|.|.+ +..+.+|+..|+..|..+-+
T Consensus 51 L~tI~~kl~~~~Y~s--~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 51 LGTMLKKLKNLQYKS--KAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 368999999999986 78999999999999998844
No 45
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.48 E-value=30 Score=35.22 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=31.7
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
...|+.++++|.|.+ ...+.+|+..|+..|..+-+.+
T Consensus 49 L~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~ 85 (108)
T cd05495 49 LSTIRRKLDTGQYQD--PWQYVDDVWLMFDNAWLYNRKT 85 (108)
T ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 367999999999986 7889999999999999985543
No 46
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=41.59 E-value=20 Score=37.94 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=32.2
Q ss_pred cccchhhHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000359 673 FFVPKVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 713 (1618)
Q Consensus 673 ~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1618)
|+---+..||.|+.||||.. ......||.+|..+|.++-
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~t--p~~F~~DiklI~~Nc~~yn 100 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYAT--PKDFLKDIKRIVRDAKTIG 100 (119)
T ss_pred EeccCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHhC
Confidence 44447899999999999976 4566789999999998863
No 47
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.16 E-value=73 Score=32.29 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.2
Q ss_pred hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 679 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 679 ~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
..|+.|+++|+|.+ +...++||..|+..|..+-+-+
T Consensus 46 ~tI~~kl~~~~Y~s--~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 46 STLEKNVRKKAYGS--TDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 67899999999976 7889999999999999885444
No 48
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=40.35 E-value=9.9 Score=47.52 Aligned_cols=130 Identities=12% Similarity=-0.015 Sum_probs=84.2
Q ss_pred EEeCccCCcCCCCEEEEEecEEecccchhhhhhhhhhhhccCCCC-CCcceeeeccCCCCCCCCCceEEEccccCCCccc
Q 000359 1068 VVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDP-APEFYNIYLERPKGDADGYDLVVVDAMHKANYAS 1146 (1618)
Q Consensus 1068 VFA~rDE~IpKGeFI~EYvGEVIt~eEw~ErqeaiRrlq~~skd~-~~~fY~m~L~r~~gD~dg~D~lvIDAtrkGNiAR 1146 (1618)
..+.+. +..|++|+.++|+..-.. .+-............ ...||..+ .+.....++...|+..+
T Consensus 130 ~~~~~~--~~~~~~vw~~vg~~~~~~----c~vc~~~~~~~~~~~~~~~f~~~~---------~~~~~~~~~~~~g~~~~ 194 (463)
T KOG1081|consen 130 CRAFKK--REVGDLVWSKVGEYPWWP----CMVCHDPLLPKGMKHDHVNFFGCY---------AWTHEKRVFPYEGQSSK 194 (463)
T ss_pred eeeecc--ccceeEEeEEcCcccccc----cceecCcccchhhccccceeccch---------hhHHHhhhhhccchHHH
Confidence 555544 899999999999985321 100000000000001 12222221 11223455555999999
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEccCCCCCCe------EEEecCCCCCccccccCceEEeCCCccccccccC
Q 000359 1147 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE------ITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNL 1216 (1618)
Q Consensus 1147 FINHSCdPNCevq~V~VdG~pRIafFAlRDIkaGEE------LTFDYG~~~eskke~~~~~ClCGS~nCRG~iL~~ 1216 (1618)
+++|+|.|+-.+..+...+.+|+..++.+.++-++- .+-+|...... ..+.|.|.+..|...++..
T Consensus 195 ~l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~~~ 266 (463)
T KOG1081|consen 195 LIPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCPI----GDQQIYSAAVSCIKKLLAK 266 (463)
T ss_pred hhhhccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccccccCc----Ccccccchhhhhhhhcccc
Confidence 999999999999999899999999999999988877 66666655442 2345888888888876544
No 49
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=37.85 E-value=20 Score=26.23 Aligned_cols=11 Identities=55% Similarity=1.467 Sum_probs=9.9
Q ss_pred cceEEecCCCC
Q 000359 217 GEWYYLDGAGH 227 (1618)
Q Consensus 217 gdW~ylDg~g~ 227 (1618)
|.|||++..|.
T Consensus 8 ~~wYy~~~~G~ 18 (19)
T PF01473_consen 8 GNWYYFDSDGY 18 (19)
T ss_dssp TEEEEETTTSB
T ss_pred CEEEEeCCCcc
Confidence 89999999885
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=37.67 E-value=22 Score=26.63 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.3
Q ss_pred CcceEeeccccccccccccCCc
Q 000359 525 HLSSIDIRGCGQFGELALKFPN 546 (1618)
Q Consensus 525 ~~~~~~i~~~~~~~~~~~~~~~ 546 (1618)
.|.++||+|| +|.++...|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4689999999 98888877765
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.64 E-value=28 Score=43.44 Aligned_cols=60 Identities=28% Similarity=0.512 Sum_probs=48.1
Q ss_pred chhHHHHHHH--hhhccc--cc-----------------------ceeeecccccCChhHHHHHHHhCCCcceEeecccc
Q 000359 483 CTDSLIRKTL--NAFDKE--KL-----------------------NSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCG 535 (1618)
Q Consensus 483 ctd~~~~~~~--~~y~~~--~~-----------------------~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~ 535 (1618)
|++.-+..|+ ++|+.+ ++ ..+-..+||++|...|..+-...|.|..+.+.||.
T Consensus 252 C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 252 CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 8888888776 777432 22 23445789999999999999999999999999999
Q ss_pred ccccccc
Q 000359 536 QFGELAL 542 (1618)
Q Consensus 536 ~~~~~~~ 542 (1618)
||++.-.
T Consensus 332 ~fsd~~f 338 (483)
T KOG4341|consen 332 QFSDRGF 338 (483)
T ss_pred hhhhhhh
Confidence 9998643
No 52
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=34.20 E-value=50 Score=33.73 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=32.6
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
+..|+.++++|.|.+ +..+..|+..|+..|.++-..++
T Consensus 51 L~tI~~kl~~~~Y~s--~~ef~~D~~l~f~Na~~yn~~~S 88 (106)
T cd05525 51 LSTIEKQILTGYYKT--PEAFDSDMLKVFRNAEKYYGRKS 88 (106)
T ss_pred HHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 357999999999987 88999999999999999855554
No 53
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=33.62 E-value=1.1e+02 Score=30.76 Aligned_cols=38 Identities=13% Similarity=0.363 Sum_probs=31.6
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
...|+.++++|.|. -...+..|+..|...|..+-+.++
T Consensus 48 L~~I~~kl~~~~Y~--s~~ef~~D~~li~~N~~~yn~~~s 85 (102)
T cd05499 48 LGTISKKLQNGQYQ--SAKEFERDVRLIFKNCYTFNPEGT 85 (102)
T ss_pred HHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46799999999995 466889999999999998855544
No 54
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=32 Score=39.56 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=45.9
Q ss_pred chhHHHHHH--HhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeeccccccc
Q 000359 483 CTDSLIRKT--LNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFG 538 (1618)
Q Consensus 483 ctd~~~~~~--~~~y~~~~~~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~ 538 (1618)
|+||-|-++ =|==+-..|+++.|.-|.++....|+.+-..+|+|+.+||.||-+.-
T Consensus 108 Asds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 108 ASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 566544333 23345688999999999999999999999999999999999998843
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=32.89 E-value=41 Score=29.20 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred ccceeeecccccCChhHHHHHHHhCCCcceEeeccccccccc
Q 000359 499 KLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGEL 540 (1618)
Q Consensus 499 ~~~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~~~ 540 (1618)
+++.+-|.++ +|+. |...|..+|.|.+++++|| ++-++
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCCC
Confidence 5666777666 5663 5666889999999999999 56554
No 56
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.61 E-value=94 Score=30.93 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcccccccc------------------hhhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 657 FLASSLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 657 ~~~~~~~~~~~~~~~d~~~~------------------~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
++..-|..+|+.-....|.= -...|+.|+++|+|. -...+..||..|+..|..+-+.+.
T Consensus 5 ~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~--s~~~f~~Dv~li~~Na~~yN~~~s 81 (101)
T cd05509 5 QLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYV--TLEEFVADLKLIFDNCRLYNGPDT 81 (101)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45556666777666555531 135799999999996 467889999999999988755443
No 57
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.50 E-value=58 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 716 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1618)
...|+.++++|.|. .+..+..||..|+..|..+-+.+
T Consensus 48 l~~I~~kl~~~~Y~--s~~ef~~D~~li~~Na~~yn~~~ 84 (102)
T cd05498 48 LSTIKKKLDNREYA--DAQEFAADVRLMFSNCYKYNPPD 84 (102)
T ss_pred HHHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 36799999999996 57899999999999999985544
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=31.62 E-value=31 Score=30.64 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=28.4
Q ss_pred CCcceEeeccccccccccc----cCCccceeecccccCcccCCcch-hhhhhhhh
Q 000359 524 PHLSSIDIRGCGQFGELAL----KFPNINWVKSQKSRGAKFNDSRS-KIRSLKQI 573 (1618)
Q Consensus 524 p~~~~~~i~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~ 573 (1618)
|+|.+++|++| ++.++.. .++++.+|.=+.+.+..++.+.- .+.+|+.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE
Confidence 56667777776 5555552 34566666655555555555543 55555544
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=31.08 E-value=85 Score=37.20 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=68.8
Q ss_pred ccccccchHHHHHHHHHhhhhh---hhHHhh--cchhhHHHHHhhhcccceeeecCC-CCCCchhHHHHHHHhhhccccc
Q 000359 427 GWGLLDGHTLAHVFHFLRSDMK---SLAFAS--LTCRHWRAAVRFYKGISRQVDLSS-VGPNCTDSLIRKTLNAFDKEKL 500 (1618)
Q Consensus 427 ~w~~l~g~~l~r~fh~lr~d~k---sl~~~~--~tc~~w~~~~~~~~~~~~~~~~ss-~g~~ctd~~~~~~~~~y~~~~~ 500 (1618)
+|....+.+...+.|.+-.... .|.+.. .....|..++-.+..-.+.+|++. ....+........+.. .-.++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L 245 (482)
T KOG1947|consen 167 SLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS-ICRKL 245 (482)
T ss_pred eeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh-hcCCc
Confidence 4444444455555555544433 333321 112233556666777777888875 2222222222222222 23788
Q ss_pred ceeeecccccCChhHHHHHHHhCCCcceEeeccccc
Q 000359 501 NSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQ 536 (1618)
Q Consensus 501 ~~~~l~~c~~~~~~~l~~~~~~~p~~~~~~i~~~~~ 536 (1618)
+.+-|.+|.++|..+|+.+...+|.|.++.+.+|.+
T Consensus 246 ~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 246 KSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred CccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 999999999999999999999999999999999997
No 60
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=27.29 E-value=78 Score=32.11 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=32.1
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
...|+.++++|+|.+ +..+..|+..|...|..+-..+.
T Consensus 49 L~tI~~kl~~~~Y~s--~~ef~~D~~l~~~Na~~yN~~~s 86 (105)
T cd05515 49 MEKIRSKIEGNQYQS--LDDMVSDFVLMFDNACKYNEPDS 86 (105)
T ss_pred HHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 467999999999965 78999999999999998855443
No 61
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.28 E-value=1.1e+02 Score=32.20 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcccccccch------------------hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000359 656 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 713 (1618)
Q Consensus 656 ~~~~~~~~~~~~~~~~d~~~~~------------------~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1618)
..+..-|..+|+.-..-.|.=- +..|+.|+++|+|.+ ...+..|+..|...|..+-
T Consensus 8 ~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~--~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 8 KQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDD--PMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 3445566777776655555422 367999999999974 6789999999999999984
No 62
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=25.67 E-value=94 Score=31.64 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=31.7
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
...|+.++++|.|.+ +..+..|+..|+..|..+-..+.
T Consensus 49 l~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~s 86 (103)
T cd05518 49 LKTIEHNIRNDKYAT--EEELMDDFKLMFRNARHYNEEGS 86 (103)
T ss_pred HHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 356999999999976 67899999999999999855443
No 63
>PF02792 Mago_nashi: Mago nashi protein; InterPro: IPR004023 This family was originally identified in drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene []. The human homologue has been shown to interact with an RNA binding protein, ribonucleoprotein rbm8 (Q9Y5S9 from SWISSPROT) []. An RNAi knockout of the Caenorhabditis elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination [] but the protein is also found in hermaphrodites and other organisms without a sexual differentiation.; GO: 0005634 nucleus; PDB: 2XB2_Y 2J0S_C 3EX7_A 2J0Q_F 1P27_C 2HYI_A 2X1G_B 1HL6_B 1RK8_B 1OO0_A ....
Probab=24.53 E-value=43 Score=36.36 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhhhhHHhhcchhhH
Q 000359 437 AHVFHFLRSDMKSLAFASLTCRHW 460 (1618)
Q Consensus 437 ~r~fh~lr~d~ksl~~~~~tc~~w 460 (1618)
.|||+||-.|+|.|||+ ++.-|+
T Consensus 116 Lr~FyYLvqDLKclvfs-Li~lHF 138 (143)
T PF02792_consen 116 LRVFYYLVQDLKCLVFS-LISLHF 138 (143)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhee
Confidence 59999999999999994 555554
No 64
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=24.09 E-value=97 Score=31.49 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=31.4
Q ss_pred hhHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 678 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 678 ~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
...|+.|+++|+|.+ +..+..|+..|+..|..+-.-+.
T Consensus 49 L~tI~~kl~~~~Y~s--~~~f~~D~~lm~~Na~~yN~~~s 86 (103)
T cd05520 49 LQQIRTKLKNGEYET--LEELEADLNLMFENAKRYNVPNS 86 (103)
T ss_pred HHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 356999999999975 66889999999999999855443
No 65
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.77 E-value=1.2e+02 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=31.3
Q ss_pred hHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000359 679 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 717 (1618)
Q Consensus 679 ~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1618)
..|+.|+++|.|.+ +....+|+..|...|..+-+.+.
T Consensus 46 ~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yn~~~s 82 (99)
T cd05506 46 GTVKKKLEKGEYSS--PEEFAADVRLTFANAMRYNPPGN 82 (99)
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 56999999999986 78899999999999998744443
No 66
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=1.3e+02 Score=37.72 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.4
Q ss_pred CcccccCCC---CCCCeEEEEEEECCEEEEEEEEccCCCCCCeEEEecCCCCC
Q 000359 1143 NYASRICHS---CRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1192 (1618)
Q Consensus 1143 NiARFINHS---CdPNCevq~V~VdG~pRIafFAlRDIkaGEELTFDYG~~~e 1192 (1618)
-.|-|+||- |..|+.. +.-.+-++|.|+|++|+|+.--||....
T Consensus 217 p~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~~p~ 263 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGLKPM 263 (466)
T ss_pred chhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccccCcc
Confidence 345689984 6666553 3335578999999999999999985544
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.82 E-value=70 Score=24.74 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=18.7
Q ss_pred ccceeeecccccCChhHHHHHH
Q 000359 499 KLNSILLVGCTNITSGMLEEIL 520 (1618)
Q Consensus 499 ~~~~~~l~~c~~~~~~~l~~~~ 520 (1618)
+++.+-|.+|.+||...|..|-
T Consensus 3 ~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 3 NLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCEeCCCCCCCcCHHHHHHHh
Confidence 5778889999999999988764
No 68
>PF14878 DLD: Death-like domain of SPT6; PDB: 3PSI_A 3PSF_A.
Probab=20.96 E-value=1.1e+02 Score=32.23 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHH---HHhhCcHHHHhhhHH-hhhhhhhchhhhhccchHHHHHhhhhhccceeeeeeehhHHHHHh
Q 000359 1271 NWVVAYSARLVRFINL---ERTKLPEEILRHNLE-EKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMR 1346 (1618)
Q Consensus 1271 ~WL~k~~A~~lryI~~---Er~~Lp~~ll~~~~~-ek~k~~~~~~l~~e~~dAe~eA~gv~~~RiQNlaiTLDKVr~vL~ 1346 (1618)
+|..|-|+..+++-+. |... |...+.+-++ .....+.++.|+ .=|..+-.+.-+|--.||--||--|+
T Consensus 15 ~lArkmA~DAle~deed~~~~~~-~~~av~~~~~~~~p~kL~~LdLd-------~yA~~Le~~~~~~K~~TL~~Ir~EL~ 86 (115)
T PF14878_consen 15 DLARKMAADALEYDEEDIAEDED-PSGAVEEIMEDDRPEKLNDLDLD-------EYAEELERQGGGNKRATLYDIRSELQ 86 (115)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHH--HT-TTHHHHTTHHHHHTTS-HH-------HHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhhcchhh-HHHHHHHHHccccHHHHhhcCHH-------HHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 5777888888776543 1111 1111222222 111223444432 23444555667788899999999999
Q ss_pred hccCCCCCCCCCccCCChHHHHHHH
Q 000359 1347 CVFGDPKKAPPPVERLSPEETVSFL 1371 (1618)
Q Consensus 1347 ~~~gdp~~a~PPL~~Lt~~ev~~~l 1371 (1618)
+.|.+.. +|+..+|++|+|.-|
T Consensus 87 ~pf~d~R---~~f~~pt~de~F~ml 108 (115)
T PF14878_consen 87 HPFEDLR---KPFREPTPDEIFTML 108 (115)
T ss_dssp STT---S---B----B-HHHHHHHH
T ss_pred Ccccccc---cCCCCCCHHHhhhHh
Confidence 9875555 799999999998754
No 69
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=20.83 E-value=54 Score=32.40 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.6
Q ss_pred EEEEEccCCCCCCeEE
Q 000359 1169 IGIYTVRGIHYGEEIT 1184 (1618)
Q Consensus 1169 IafFAlRDIkaGEELT 1184 (1618)
.|+||+|||++||-|.
T Consensus 2 rGl~At~dI~~Ge~I~ 17 (162)
T PF00856_consen 2 RGLFATRDIKAGEVIL 17 (162)
T ss_dssp EEEEESS-B-TTEEEE
T ss_pred EEEEECccCCCCCEEE
Confidence 4799999999999887
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.07 E-value=64 Score=44.15 Aligned_cols=35 Identities=31% Similarity=0.626 Sum_probs=30.9
Q ss_pred ccceEEecCCCCCcCCCcHHHHHHHHhhcccccCc
Q 000359 216 LGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHT 250 (1618)
Q Consensus 216 ~gdW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~s 250 (1618)
--+|||.|-.|.|-||.+|--+..|-.+-.|-..|
T Consensus 955 ~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~~s 989 (2235)
T KOG1789|consen 955 EEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKS 989 (2235)
T ss_pred chhheeecCCccccCchhHHHHHHHhcccchhHHH
Confidence 35899999999999999999999999888876554
Done!