Query 000359
Match_columns 1618
No_of_seqs 284 out of 1606
Neff 3.5
Searched_HMMs 13730
Date Tue Mar 26 17:41:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000359.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_136-139//hhsearch_scop/000359hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ml9a_ b.85.7.1 (A:) Dim-5 {F 100.0 6.3E-37 4.6E-41 280.7 14.0 244 938-1204 9-284 (284)
2 d1mvha_ b.85.7.1 (A:) SET doma 100.0 2.4E-35 1.7E-39 269.3 19.6 229 925-1192 17-264 (269)
3 d2f69a2 b.85.7.1 (A:194-364) H 99.9 1.6E-22 1.2E-26 176.8 10.0 129 1062-1213 31-160 (171)
4 d2g46a1 b.85.7.2 (A:1-119) Vir 99.7 6E-18 4.3E-22 143.8 9.4 107 1056-1194 6-112 (119)
5 d2h2ja2 b.85.7.3 (A:50-310) Ru 97.9 2.3E-06 1.7E-10 60.3 2.8 49 1143-1191 187-242 (261)
6 d1fs1a1 a.158.1.1 (A:109-149) 90.5 0.072 5.2E-06 27.9 2.5 36 428-465 1-36 (41)
7 d1wh2a_ d.76.1.1 (A:) Hypothet 90.4 0.06 4.4E-06 28.5 2.0 49 215-263 16-64 (78)
8 d1nexb1 a.158.1.1 (B:270-369) 84.7 0.24 1.8E-05 24.1 2.3 34 430-465 8-41 (100)
9 d1p22a1 a.158.1.1 (A:135-252) 82.1 0.32 2.3E-05 23.2 2.1 31 433-465 20-50 (118)
10 d2ovrb1 a.158.1.1 (B:2263-2364 80.5 0.43 3.1E-05 22.3 2.3 37 427-465 18-54 (102)
11 d2astb2 c.10.1.3 (B:2136-2419) 69.9 2.2 0.00016 17.2 6.3 41 498-538 148-189 (284)
12 d1syxb1 d.76.1.1 (B:25-86) GYF 59.0 3.4 0.00025 15.8 2.9 37 218-254 3-42 (62)
No 1
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}
Probab=100.00 E-value=6.3e-37 Score=280.65 Aligned_cols=244 Identities=20% Similarity=0.266 Sum_probs=159.2
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCC--CCC-CCCCCCCCC-CCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCC-
Q ss_conf 66788-563123455666788742--011-145463344-534567988541113311003689999997320146689-
Q 000359 938 ELDME-LPEVKDYKPRKQLGDQVF--EQE-VYGIDPYTH-NLLLDSMPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTG- 1011 (1618)
Q Consensus 938 ~~d~e-~P~~~~Y~prkvlG~DV~--Eqe-~yGiDcYTr-~~L~d~lP~el~W~~~~K~~FIek~LL~tLnkqvr~~~G- 1011 (1618)
++|.+ +|.-|.|+++.+.+.+|. ... ..||+|... .+....|+|- .. ....+...... ......++.
T Consensus 9 ~vd~~~~p~~f~Yi~~~~~~~~~~~~~~~~~~gC~C~~~~~c~~~~C~C~---~~-~~~~~~~~~~~---~~~~~~~~~~ 81 (284)
T d1ml9a_ 9 REDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCL---DE-MAPDSDEEADP---YTRKKRFAYY 81 (284)
T ss_dssp SSSSCCCCTTCEECSSCEECTTCCCCCGGGCCCCCCSSTTGGGSTTSGGG---TT-SCCC--------------CCSSBB
T ss_pred CCCCCCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HH-CCCCCCCCCCC---CCCCCCCCCC
T ss_conf 77777899998887237767998638745777888958997689889273---45-38332335565---4434542011
Q ss_pred -CCCCCCC------CCCCCCCCCCC-CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf -9999998------78865211467-857468981333101121122335788641126744269908457869999899
Q 000359 1012 -TGNTPMM------YPLQPVIEEIE-KEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVV 1083 (1618)
Q Consensus 1012 -sg~tP~~------c~ckpiiEC~~-~~C~eeCdNRvlQ~Cq~i~kaI~k~PleVFrT~~KG~GVfA~kDE~IkKGeFI~ 1083 (1618)
.+..... ....+++||+. |.|+..|.||++|.+... ++++|++..|||||||.++ |++|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~-------~lev~kt~~kG~Gv~a~~~--I~kGt~I~ 152 (284)
T d1ml9a_ 82 SQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTV-------PLQIFRTKDRGWGVKCPVN--IKRGQFVD 152 (284)
T ss_dssp CSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCS-------CEEEEECSSSCEEEECSSC--BCTTCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCCC-------CEEEEECCCCCEEEEECCC--CCCCCEEE
T ss_conf 33444453433224688835677989896998898224389845-------7799985897238855877--18999999
Q ss_pred EEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC------CEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 982499436211223244554210689999862466414888999998------25999065678945445789999818
Q 000359 1084 EFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGY------DLVVVDAMHKANYASRICHSCRPNCE 1157 (1618)
Q Consensus 1084 EYVGEVIs~eEw~ErQdaiRrlq~~~kd~~~~FY~i~L~r~~gD~~Gy------d~lvIDAt~kGNiARFINHSCePNCe 1157 (1618)
||+||+++..+..+ +...+......+.|.+.+..... .... ..++|||+.+||+||||||||+|||+
T Consensus 153 eY~Gevi~~~ea~~------~~~~~~~~~~~~~y~~~l~~~~~-~~~~~~~~~~~~~~iDa~~~GN~aRfiNHSC~PN~~ 225 (284)
T d1ml9a_ 153 RYLGEIITSEEADR------RRAESTIARRKDVYLFALDKFSD-PDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMA 225 (284)
T ss_dssp ECCCEEECHHHHHH------HHHHSCGGGCHHHHEEECCSSCC-SSSSCHHHHSCCCEEECSSEECGGGGCEECSSCSEE
T ss_pred EECCCCCCHHHHHH------HHHHHHHHCCCCCCCEECCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHEEECCCCCCCC
T ss_conf 93475368999999------99888761468842020034566-431111236785467411215612314313567861
Q ss_pred EEEEEECC----EEEEEEEECCCCCCCCEEEEECCCCCCCCC--------CCCCCEEEE
Q ss_conf 99999889----889999982588999828872599987600--------146906970
Q 000359 1158 AKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTESKE--------EYEASVCLC 1204 (1618)
Q Consensus 1158 vq~v~VdG----~pRIaIFAlRDIkaGEELTfDYg~~~es~k--------E~e~~~ClC 1204 (1618)
++.+.+++ .++|+|||+|||++||||||||+..+++.+ ....+.|+|
T Consensus 226 ~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C 284 (284)
T d1ml9a_ 226 IFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284 (284)
T ss_dssp EEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred EEEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCHHHCCCCCCEEEC
T ss_conf 68999404789720799998971299998987618997773100010112568766259
No 2
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00 E-value=2.4e-35 Score=269.26 Aligned_cols=229 Identities=19% Similarity=0.243 Sum_probs=151.6
Q ss_pred HHHHHHHCCCCC-C---CCCCC-CCCC-CCCCCCCCCCCCCCC---CCCCCCCCCCCCC--CC--CCCCCCCCHHHHHHC
Q ss_conf 999831015999-7---66788-5631-234556667887420---1114546334453--45--679885411133110
Q 000359 925 YAEKLNAQKNGS-E---ELDME-LPEV-KDYKPRKQLGDQVFE---QEVYGIDPYTHNL--LL--DSMPDELDWNLLEKH 991 (1618)
Q Consensus 925 y~~kl~~~~~gt-~---~~d~e-~P~~-~~Y~prkvlG~DV~E---qe~yGiDcYTr~~--L~--d~lP~el~W~~~~K~ 991 (1618)
++.+|..++..- . .+|.+ .|.. |+|++..+.+.+|.- ....||+|-.... .. ..|.|- .. ..
T Consensus 17 ~~~~~~~~~~~pi~~~N~vD~~~~P~~~F~yi~~~~~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~---~~-~~- 91 (269)
T d1mvha_ 17 FRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECL---DD-LD- 91 (269)
T ss_dssp HHHHHHTSSSSCEEEECSSCCCCCSCCCSEECSSCEECTTCCCCCGGGCCCCCCCCSSSSCTTCTTTCSSS---TT-CC-
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC---CC-CC-
T ss_conf 99998547799827886999988999885891031048997758966668989989989577888640120---44-67-
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 0368999999732014668-9999999878865211467-8574689813331011211223357886411267442699
Q 000359 992 LFIEDVLLRTLNKQVRHFT-GTGNTPMMYPLQPVIEEIE-KEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVV 1069 (1618)
Q Consensus 992 ~FIek~LL~tLnkqvr~~~-Gsg~tP~~c~ckpiiEC~~-~~C~eeCdNRvlQ~Cq~i~kaI~k~PleVFrT~~KG~GVf 1069 (1618)
+. ..++ .+..........+++||+. |.|+..|.||++|.+... ++++|++..+|||||
T Consensus 92 -----------~~--~~~~~~~~~rl~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~-------~leV~~t~~~G~Gvf 151 (269)
T d1mvha_ 92 -----------EP--THFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTL-------PLEIFKTKEKGWGVR 151 (269)
T ss_dssp -----------SS--CCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCS-------CEEEEECSSSSEEEE
T ss_pred -----------CC--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCC-------CEEEEECCCCCEEEE
T ss_conf -----------88--7656166773135768758879999999998978464788834-------879998078776898
Q ss_pred ECCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 08457869999899982499436211223244554210689999862466414888999998259990656789454457
Q 000359 1070 CNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRIC 1149 (1618)
Q Consensus 1070 A~kDE~IkKGeFI~EYVGEVIs~eEw~ErQdaiRrlq~~~kd~~~~FY~i~L~r~~gD~~Gyd~lvIDAt~kGNiARFIN 1149 (1618)
|.++ |++|+||+||+||+++..+..+ +...+.......+|.+...... ..++|||+..||++||||
T Consensus 152 A~~~--I~kGt~I~eY~Gevi~~~e~~~------R~~~y~~~~~~~~~~l~~~~~~------~~~~iDa~~~GN~aRFiN 217 (269)
T d1mvha_ 152 SLRF--APAGTFITCYLGEVITSAEAAK------RDKNYDDDGITYLFDLDMFDDA------SEYTVDAQNYGDVSRFFN 217 (269)
T ss_dssp ESSC--BCTTCEEEECCCEEEEHHHHHH------HHTTCCSCSCCCEEEECSSCSS------SCEEEECSSEECGGGGCE
T ss_pred ECCC--CCCCCEEEEECCEEECHHHHHH------HHHHHHHCCCCCHHHEECCCCC------CCCEEEEEECCCCEEEEE
T ss_conf 5853--0789567886065775999999------8876764388410111102466------530464334486417731
Q ss_pred CCCCCCEEEEEEEECC----EEEEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf 8999981899999889----889999982588999828872599987
Q 000359 1150 HSCRPNCEAKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTE 1192 (1618)
Q Consensus 1150 HSCePNCevq~v~VdG----~pRIaIFAlRDIkaGEELTfDYg~~~e 1192 (1618)
|||+|||.++.+.+++ .++|+|||+|||++||||||||++..+
T Consensus 218 HSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d 264 (269)
T d1mvha_ 218 HSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD 264 (269)
T ss_dssp ECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 58998817789996687676426999989834999989871399767
No 3
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=1.6e-22 Score=176.80 Aligned_cols=129 Identities=16% Similarity=0.047 Sum_probs=93.0
Q ss_pred CCCCCEEEECCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf 67442699084578699998999824994362112232445542106899998624664148889999982599906567
Q 000359 1062 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHK 1141 (1618)
Q Consensus 1062 ~~KG~GVfA~kDE~IkKGeFI~EYVGEVIs~eEw~ErQdaiRrlq~~~kd~~~~FY~i~L~r~~gD~~Gyd~lvIDAt~k 1141 (1618)
+.+|+||||.++ |++|++|++|.|++++..+..++... ...|.+.+..... .+......+++...
T Consensus 31 p~~G~GlFA~~~--I~kG~~I~~Y~G~~i~~~e~~~~~~~------------~~~y~~~l~~~~~-~d~~~~~~~~~~~~ 95 (171)
T d2f69a2 31 SSAGEGLFSKVA--VGPNTVMSFYNGVRITHQEVDSRDWA------------LNGNTLSLDEETV-IDVPEPYNHVSKYC 95 (171)
T ss_dssp TTCCEEEEESSC--BCTTCEEEEECCEEECHHHHHTSCGG------------GCSSCEECSSSCE-EECCTTTTSTTTCC
T ss_pred CCCCEEHCCCCC--CCCCCEEEEEEEEEECHHHHHHHHHH------------CCCCEEEECCCEE-ECCCCCCCCCCCCC
T ss_conf 798601100864--47999999845699879998653232------------0363777536615-32775433334114
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC-CEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 89454457899998189999988-9889999982588999828872599987600146906970997643101
Q 000359 1142 ANYASRICHSCRPNCEAKVTAVD-GHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSY 1213 (1618)
Q Consensus 1142 GNiARFINHSCePNCevq~v~Vd-G~pRIaIFAlRDIkaGEELTfDYg~~~es~kE~e~~~ClCGS~nCRG~i 1213 (1618)
||.+|||||||+|||..+.+..+ +.++|.+||+|||++|||||+||++... .+.++.+.|..|+
T Consensus 96 g~~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~~~--------~~~~~~p~~p~w~ 160 (171)
T d2f69a2 96 ASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS--------PPGKSGPEAPEWY 160 (171)
T ss_dssp SCCGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSC--------CC-----CSCHHH
T ss_pred CCCCEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCC--------CCCCCCCCCCHHH
T ss_conf 6741165716887734899994499709999986574999989987489888--------7666798870899
No 4
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Probab=99.73 E-value=6e-18 Score=143.83 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEE
Q ss_conf 86411267442699084578699998999824994362112232445542106899998624664148889999982599
Q 000359 1056 DDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVV 1135 (1618)
Q Consensus 1056 leVFrT~~KG~GVfA~kDE~IkKGeFI~EYVGEVIs~eEw~ErQdaiRrlq~~~kd~~~~FY~i~L~r~~gD~~Gyd~lv 1135 (1618)
+.+-.+..+|+||||.++ |++|++|++|.|++++..+... . ..+ |.+.+... ..
T Consensus 6 v~v~~s~~~G~GvfA~~~--i~~g~~i~~~~g~~~~~~~~~~------~--------~~~-y~~~~~~~---------~~ 59 (119)
T d2g46a1 6 VIVKKSPLGGYGVFARKS--FEKGELVEECLCIVRHNDDWGT------A--------LED-YLFSRKNM---------SA 59 (119)
T ss_dssp CEECCCSSCSSCEEECSC--BCTTCCCEEEECEEECSTHHHH------H--------TCS-SEEEETTE---------EE
T ss_pred EEEEECCCCCEEEEECCH--HHCCCEEECCCEEEECHHHHHH------H--------HHC-EEEECCCC---------CC
T ss_conf 799975898409998952--4379777244279833788765------4--------200-02300443---------21
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 90656789454457899998189999988988999998258899982887259998760
Q 000359 1136 VDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESK 1194 (1618)
Q Consensus 1136 IDAt~kGNiARFINHSCePNCevq~v~VdG~pRIaIFAlRDIkaGEELTfDYg~~~es~ 1194 (1618)
+ .++.+||+||||+|||... ...+..++.++|+|||++|||||+||+..++..
T Consensus 60 ~----~~~~~~~~NHsc~pN~~~~--~~~~~~~~~~~A~rdI~~GEEL~~dYg~~yw~~ 112 (119)
T d2g46a1 60 M----ALGFGAIFNHSKDPNARHE--LTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp E----CCSTTSSCCCCSSCCCEEE--ECSSSSEEEEECSSCBCTTEEECCCCCSSSCCS
T ss_pred E----ECCCEEEEEECCCCCCEEE--EECCCCEEEEEECCCCCCCCEEEEECCHHHHCC
T ss_conf 0----0687589874687674299--988998899999853699999999659457435
No 5
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=97.92 E-value=2.3e-06 Score=60.27 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCEEEEEE-------EECCEEEEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 9454457899998189999-------988988999998258899982887259998
Q 000359 1143 NYASRICHSCRPNCEAKVT-------AVDGHYQIGIYTVRGIHYGEEITFDYNSVT 1191 (1618)
Q Consensus 1143 NiARFINHSCePNCevq~v-------~VdG~pRIaIFAlRDIkaGEELTfDYg~~~ 1191 (1618)
..+-++||||+||+..... ...+...+.+.|.|+|++|||||++||...
T Consensus 187 P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~ 242 (261)
T d2h2ja2 187 PMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK 242 (261)
T ss_dssp TTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSSC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCC
T ss_conf 34178645899884201235567654347883799998998899998988169999
No 6
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.51 E-value=0.072 Score=27.90 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 33454037899998974113366874300034899886
Q 000359 428 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 428 w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
|..|--.+|.+||.|| +.++|+-++.+||+|+..++
T Consensus 1 f~~LP~eil~~If~~L--~~~dl~~~~~Vcr~w~~l~~ 36 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCL--CLPELLKVSGVCKRWYRLAS 36 (41)
T ss_dssp CCSSCHHHHHHHHTTS--CGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHC
T ss_conf 9858799999999869--99999999999999999967
No 7
>d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=90.36 E-value=0.06 Score=28.45 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=40.2
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
Q ss_conf 3233398439888769986788999873024335763100148313321
Q 000359 215 QLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPL 263 (1618)
Q Consensus 215 ~~gdW~ylDg~g~E~gP~sfseLq~lv~~g~i~~~sSvfrK~d~~WvPv 263 (1618)
+.=-|||+|-.|..||||+-++++.-.++|-.+..--|.|..+.-+-++
T Consensus 16 e~~~W~Y~D~~g~~qGPfs~~~M~~W~~~GyF~~~l~Vrr~g~~~~~~~ 64 (78)
T d1wh2a_ 16 EKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAV 64 (78)
T ss_dssp SSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCE
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCE
T ss_conf 6347999899999969969899999998799999807998999977628
No 8
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=84.66 E-value=0.24 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 454037899998974113366874300034899886
Q 000359 430 LLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 430 ~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
.|-..++.+||.|| |.++|+-++.+||.|+..+.
T Consensus 8 ~LP~Ell~~I~s~L--d~~dL~~~s~Vcr~W~~~~~ 41 (100)
T d1nexb1 8 SLPFEISLKIFNYL--QFEDIINSLGVSQNWNKIIR 41 (100)
T ss_dssp HSCHHHHHHHHTTS--CHHHHHHHTTTCHHHHHHHH
T ss_pred HCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 59899999999779--98899999999999999997
No 9
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.15 E-value=0.32 Score=23.19 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 037899998974113366874300034899886
Q 000359 433 GHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 433 g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
-.++.+||.|| |+++|+-++.+||+|+..++
T Consensus 20 ~EI~~~Ils~L--d~~dL~~~s~Vck~W~~l~~ 50 (118)
T d1p22a1 20 DHIAENILSYL--DAKSLCAAELVCKEWYRVTS 50 (118)
T ss_dssp HHHHHHHHTTC--CHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999769--99999999999999999976
No 10
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.49 E-value=0.43 Score=22.28 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 533454037899998974113366874300034899886
Q 000359 427 GWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 465 (1618)
Q Consensus 427 ~w~~l~g~~l~r~fh~lr~d~ksl~~~~~tc~~w~~~~~ 465 (1618)
--..|-..+|..||-|| |.++|+-++.+||.|+.++.
T Consensus 18 ~i~~LP~Eil~~Ils~L--d~~dL~~~~~vcr~w~~l~~ 54 (102)
T d2ovrb1 18 FISLLPKELALYVLSFL--EPKDLLQAAQTCRYWRILAE 54 (102)
T ss_dssp TTTSSCHHHHHHHHTTS--CHHHHHHHTTSCHHHHHHHT
T ss_pred CHHHCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHC
T ss_conf 96669999999999839--99999999999999999978
No 11
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.86 E-value=2.2 Score=17.18 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=19.8
Q ss_pred CCCCEEEECCC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 34343665155-557936899999848985267312555333
Q 000359 498 EKLNSILLVGC-TNITSGMLEEILQSFPHLSSIDIRGCGQFG 538 (1618)
Q Consensus 498 ~~~~~~~l~~c-~~~~~~~l~~~~~~~p~~~~~~i~~~~~~~ 538 (1618)
.++..+.|.|| .+++...+..+...+|.|..+++.+|..+.
T Consensus 148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it 189 (284)
T d2astb2 148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 189 (284)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111012213554244444343423232221235532234778
No 12
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.04 E-value=3.4 Score=15.82 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=31.6
Q ss_pred CEEE---ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3398---439888769986788999873024335763100
Q 000359 218 EWYY---LDGAGHERGPSSFSELQVLVDQGCIQKHTSVFR 254 (1618)
Q Consensus 218 dW~y---lDg~g~E~gP~sfseLq~lv~~g~i~~~sSvfr 254 (1618)
-|+| .|..|..+|||+-.++|.-...|-.+..--|-|
T Consensus 3 ~WeYkw~~d~~g~iqGPf~~~~M~~W~~~GyF~~~l~vRr 42 (62)
T d1syxb1 3 MWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRK 42 (62)
T ss_dssp EEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEE
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8898346599987839859999999998799999966996
Done!