Query 000361
Match_columns 1617
No_of_seqs 274 out of 466
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 7E-136 2E-140 1318.6 84.4 1068 10-1104 6-1119(1266)
2 KOG1525 Sister chromatid cohes 99.1 5.3E-10 1.1E-14 148.8 16.3 220 8-230 409-648 (1266)
3 PF09465 LBR_tudor: Lamin-B re 98.9 2.8E-09 6.2E-14 92.6 6.4 44 1318-1361 7-50 (55)
4 PTZ00429 beta-adaptin; Provisi 98.6 0.0001 2.2E-09 96.6 38.6 390 269-755 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00055 1.2E-08 90.2 42.2 549 223-854 5-594 (1075)
6 KOG1020 Sister chromatid cohes 98.3 0.063 1.4E-06 72.9 54.2 136 296-443 809-945 (1692)
7 PTZ00429 beta-adaptin; Provisi 98.2 0.0042 9.2E-08 81.8 37.9 337 246-672 89-431 (746)
8 KOG1824 TATA-binding protein-i 98.2 0.082 1.8E-06 68.9 48.4 366 21-413 24-468 (1233)
9 KOG1020 Sister chromatid cohes 98.0 0.074 1.6E-06 72.3 43.0 341 61-413 588-964 (1692)
10 PF01602 Adaptin_N: Adaptin N 98.0 0.0019 4.2E-08 81.9 28.5 117 245-369 62-179 (526)
11 PF01602 Adaptin_N: Adaptin N 97.6 0.056 1.2E-06 68.8 31.7 239 244-533 133-374 (526)
12 PRK09687 putative lyase; Provi 97.6 0.0005 1.1E-08 81.0 12.1 145 246-407 41-186 (280)
13 PRK09687 putative lyase; Provi 97.4 0.0014 3E-08 77.4 12.8 129 262-407 90-219 (280)
14 KOG1060 Vesicle coat complex A 97.3 0.14 3E-06 66.0 29.3 130 271-410 44-173 (968)
15 KOG1062 Vesicle coat complex A 97.3 0.33 7.2E-06 62.9 32.4 353 260-714 105-469 (866)
16 PRK13800 putative oxidoreducta 97.1 0.051 1.1E-06 74.1 25.6 119 264-405 777-895 (897)
17 KOG2023 Nuclear transport rece 97.0 1.1 2.3E-05 57.3 31.7 369 245-651 378-789 (885)
18 smart00333 TUDOR Tudor domain. 96.8 0.0021 4.7E-08 57.2 5.8 44 1318-1363 4-48 (57)
19 PF12717 Cnd1: non-SMC mitotic 96.8 0.033 7.1E-07 61.4 16.1 94 316-411 1-94 (178)
20 KOG0212 Uncharacterized conser 96.8 2.5 5.4E-05 53.4 32.8 430 207-671 26-509 (675)
21 KOG0414 Chromosome condensatio 96.8 4.1 8.9E-05 55.4 62.4 438 245-732 295-797 (1251)
22 KOG2025 Chromosome condensatio 96.7 3.3 7.2E-05 53.5 35.3 159 217-405 59-218 (892)
23 KOG1824 TATA-binding protein-i 96.7 1.6 3.6E-05 57.6 31.6 544 204-769 454-1054(1233)
24 PF13646 HEAT_2: HEAT repeats; 96.6 0.012 2.6E-07 56.3 9.5 83 308-405 4-88 (88)
25 smart00743 Agenet Tudor-like d 96.6 0.0035 7.6E-08 56.9 5.4 36 1318-1354 4-39 (61)
26 cd04508 TUDOR Tudor domains ar 96.6 0.0042 9.1E-08 53.3 5.6 43 1320-1363 1-44 (48)
27 KOG1949 Uncharacterized conser 96.5 0.44 9.6E-06 60.7 24.0 100 266-369 224-329 (1005)
28 PRK13800 putative oxidoreducta 96.4 0.015 3.3E-07 79.1 12.4 120 263-407 622-741 (897)
29 KOG1060 Vesicle coat complex A 96.3 2.6 5.6E-05 55.0 29.6 160 245-413 91-250 (968)
30 KOG1242 Protein containing ada 96.3 1.7 3.7E-05 55.4 28.1 231 302-582 215-449 (569)
31 PF10508 Proteasom_PSMB: Prote 96.3 0.39 8.4E-06 61.6 23.3 241 165-410 91-367 (503)
32 PF10508 Proteasom_PSMB: Prote 96.3 2.3 5.1E-05 54.6 30.1 131 263-394 120-257 (503)
33 PLN03200 cellulose synthase-in 96.2 3.8 8.3E-05 59.6 33.4 371 315-752 416-812 (2102)
34 PF12348 CLASP_N: CLASP N term 95.9 0.077 1.7E-06 60.3 12.6 146 264-412 55-209 (228)
35 COG5218 YCG1 Chromosome conden 95.8 4.6 0.0001 51.2 27.7 255 269-557 98-370 (885)
36 KOG2171 Karyopherin (importin) 95.8 13 0.00027 51.0 69.0 311 62-411 86-420 (1075)
37 KOG4675 Uncharacterized conser 95.4 0.008 1.7E-07 68.9 2.4 69 1307-1381 149-218 (273)
38 PF14500 MMS19_N: Dos2-interac 95.4 1.3 2.8E-05 52.1 20.4 231 63-308 6-255 (262)
39 PF13646 HEAT_2: HEAT repeats; 95.3 0.051 1.1E-06 51.9 7.4 86 264-367 1-88 (88)
40 KOG1248 Uncharacterized conser 95.2 20 0.00044 49.2 52.5 167 121-291 282-456 (1176)
41 KOG2011 Sister chromatid cohes 95.0 0.35 7.5E-06 65.1 15.7 128 304-442 287-421 (1048)
42 PF12460 MMS19_C: RNAPII trans 94.8 9 0.0002 48.1 26.9 299 69-379 56-402 (415)
43 PF12719 Cnd3: Nuclear condens 94.8 0.39 8.5E-06 57.3 14.4 97 271-371 36-143 (298)
44 PF12348 CLASP_N: CLASP N term 94.7 0.79 1.7E-05 52.1 15.8 102 265-371 97-206 (228)
45 KOG1949 Uncharacterized conser 94.7 5.8 0.00013 51.2 23.9 188 265-462 177-377 (1005)
46 KOG2023 Nuclear transport rece 94.6 0.45 9.7E-06 60.5 14.2 182 167-382 106-293 (885)
47 KOG0915 Uncharacterized conser 94.6 20 0.00043 50.4 29.8 311 75-411 789-1162(1702)
48 COG5098 Chromosome condensatio 94.5 0.89 1.9E-05 58.0 16.4 106 306-411 302-417 (1128)
49 KOG0213 Splicing factor 3b, su 94.4 7.7 0.00017 50.4 24.0 219 63-330 560-826 (1172)
50 PF09038 53-BP1_Tudor: Tumour 94.3 0.075 1.6E-06 54.5 5.6 45 1315-1360 1-45 (122)
51 KOG1061 Vesicle coat complex A 94.3 7.2 0.00016 51.2 24.2 139 262-411 13-152 (734)
52 COG5096 Vesicle coat complex, 94.2 6.8 0.00015 52.1 24.3 129 271-410 28-157 (757)
53 cd00020 ARM Armadillo/beta-cat 94.0 0.076 1.6E-06 53.0 5.1 106 263-368 8-117 (120)
54 PF12755 Vac14_Fab1_bd: Vacuol 93.7 0.17 3.7E-06 50.6 6.8 66 341-407 26-94 (97)
55 PF12717 Cnd1: non-SMC mitotic 93.6 0.66 1.4E-05 51.2 11.9 86 247-335 10-96 (178)
56 COG5096 Vesicle coat complex, 93.5 8.6 0.00019 51.2 23.3 103 304-410 93-196 (757)
57 COG5240 SEC21 Vesicle coat com 93.5 7.4 0.00016 49.3 21.2 295 79-406 44-366 (898)
58 KOG0414 Chromosome condensatio 93.4 1.2 2.7E-05 60.1 15.6 151 244-400 896-1055(1251)
59 PLN03200 cellulose synthase-in 93.3 58 0.0013 48.3 32.4 141 265-409 407-559 (2102)
60 KOG1078 Vesicle coat complex C 91.8 5.8 0.00013 52.0 17.9 258 63-365 252-526 (865)
61 PF02985 HEAT: HEAT repeat; I 91.8 0.24 5.2E-06 39.0 3.9 29 343-371 1-29 (31)
62 PF12719 Cnd3: Nuclear condens 91.4 11 0.00024 45.1 19.3 125 284-410 5-144 (298)
63 KOG1062 Vesicle coat complex A 91.0 14 0.0003 48.9 20.1 90 275-371 307-414 (866)
64 COG5240 SEC21 Vesicle coat com 90.9 59 0.0013 41.8 30.3 51 624-674 319-369 (898)
65 PF01347 Vitellogenin_N: Lipop 90.7 3 6.6E-05 54.7 14.8 128 256-404 480-617 (618)
66 PF13513 HEAT_EZ: HEAT-like re 90.5 0.16 3.4E-06 44.9 2.0 52 317-368 1-54 (55)
67 COG5098 Chromosome condensatio 90.1 18 0.0004 46.9 19.6 139 244-382 281-427 (1128)
68 PF13001 Ecm29: Proteasome sta 90.0 12 0.00025 48.3 18.9 129 253-384 361-499 (501)
69 PF10363 DUF2435: Protein of u 90.0 2.2 4.8E-05 42.4 9.7 87 302-392 2-89 (92)
70 PF06003 SMN: Survival motor n 89.9 0.44 9.5E-06 56.1 5.5 49 1316-1364 68-117 (264)
71 KOG2259 Uncharacterized conser 89.8 0.47 1E-05 60.3 5.9 97 306-406 376-472 (823)
72 PF05804 KAP: Kinesin-associat 89.8 12 0.00026 49.9 18.9 177 644-831 289-478 (708)
73 KOG1061 Vesicle coat complex A 89.7 86 0.0019 41.8 31.7 124 246-375 70-193 (734)
74 cd00020 ARM Armadillo/beta-cat 89.6 0.58 1.3E-05 46.6 5.5 100 308-407 12-118 (120)
75 KOG0915 Uncharacterized conser 89.5 33 0.00072 48.4 22.5 352 29-393 995-1457(1702)
76 KOG2259 Uncharacterized conser 88.6 2.6 5.7E-05 54.0 11.0 112 296-410 191-311 (823)
77 KOG2956 CLIP-associating prote 88.5 4 8.7E-05 50.8 12.2 173 251-435 321-498 (516)
78 PF12755 Vac14_Fab1_bd: Vacuol 88.4 1 2.2E-05 45.2 6.1 84 279-362 3-88 (97)
79 PF13513 HEAT_EZ: HEAT-like re 88.1 0.44 9.5E-06 42.0 3.0 52 356-407 1-55 (55)
80 PF12765 Cohesin_HEAT: HEAT re 87.8 0.67 1.5E-05 39.4 3.7 39 327-365 3-41 (42)
81 TIGR02270 conserved hypothetic 87.3 3.9 8.5E-05 51.2 11.6 54 346-406 151-204 (410)
82 KOG1242 Protein containing ada 87.2 18 0.0004 46.6 17.3 186 217-411 207-403 (569)
83 KOG1820 Microtubule-associated 87.0 7.3 0.00016 52.5 14.3 150 258-411 249-445 (815)
84 KOG2011 Sister chromatid cohes 86.9 9.4 0.0002 52.1 15.2 164 204-412 264-439 (1048)
85 smart00638 LPD_N Lipoprotein N 85.5 1.1E+02 0.0024 40.0 24.2 142 205-363 421-570 (574)
86 KOG1058 Vesicle coat complex C 85.0 29 0.00063 45.7 17.4 252 64-368 142-422 (948)
87 KOG1059 Vesicle coat complex A 84.6 1.6E+02 0.0034 39.3 35.2 114 254-375 101-214 (877)
88 smart00638 LPD_N Lipoprotein N 84.5 30 0.00064 45.3 18.2 144 254-407 389-543 (574)
89 TIGR02270 conserved hypothetic 84.3 11 0.00023 47.4 13.3 135 244-409 42-176 (410)
90 PF12231 Rif1_N: Rap1-interact 83.2 1.3E+02 0.0028 37.4 27.2 320 66-411 3-354 (372)
91 COG1413 FOG: HEAT repeat [Ener 82.7 8.6 0.00019 46.4 11.4 136 248-409 94-242 (335)
92 COG5181 HSH155 U2 snRNP splice 79.7 1.6E+02 0.0035 38.4 20.5 302 53-366 599-942 (975)
93 KOG1967 DNA repair/transcripti 78.7 9.7 0.00021 50.9 10.3 149 261-409 866-1024(1030)
94 PF12074 DUF3554: Domain of un 78.5 1.1E+02 0.0024 37.2 19.1 204 147-355 19-257 (339)
95 KOG0413 Uncharacterized conser 78.1 28 0.00061 46.8 13.9 131 275-410 944-1074(1529)
96 KOG0392 SNF2 family DNA-depend 76.4 12 0.00027 51.3 10.4 137 241-382 792-944 (1549)
97 KOG1240 Protein kinase contain 76.4 21 0.00046 49.0 12.5 157 242-399 440-636 (1431)
98 COG1413 FOG: HEAT repeat [Ener 76.3 17 0.00038 43.7 11.3 47 357-410 164-210 (335)
99 PF14676 FANCI_S2: FANCI solen 75.1 3.6 7.7E-05 45.0 4.4 120 246-368 39-158 (158)
100 KOG1243 Protein kinase [Genera 75.0 9.5 0.0002 49.8 8.7 108 301-408 327-436 (690)
101 KOG1943 Beta-tubulin folding c 74.9 3.6E+02 0.0078 37.7 31.7 179 205-413 515-709 (1133)
102 KOG2025 Chromosome condensatio 74.9 3E+02 0.0065 36.8 32.5 213 141-407 75-292 (892)
103 PF04826 Arm_2: Armadillo-like 74.4 97 0.0021 36.6 16.2 145 217-363 88-254 (254)
104 KOG0368 Acetyl-CoA carboxylase 74.2 1.5E+02 0.0034 42.2 19.3 225 107-344 768-1022(2196)
105 KOG1992 Nuclear export recepto 73.8 86 0.0019 42.1 16.5 116 113-233 603-733 (960)
106 KOG1059 Vesicle coat complex A 72.4 44 0.00096 44.0 13.4 165 244-409 163-365 (877)
107 PF12765 Cohesin_HEAT: HEAT re 72.0 4.7 0.0001 34.3 3.5 39 366-404 3-42 (42)
108 PF11864 DUF3384: Domain of un 71.1 3.1E+02 0.0067 35.2 21.8 166 116-291 147-330 (464)
109 COG5537 IRR1 Cohesin [Cell div 70.7 6.1 0.00013 50.4 5.5 105 302-410 273-387 (740)
110 KOG0166 Karyopherin (importin) 70.4 11 0.00025 48.0 7.8 141 262-406 152-305 (514)
111 PF01347 Vitellogenin_N: Lipop 70.2 52 0.0011 43.3 14.4 219 151-406 348-586 (618)
112 KOG2213 Apoptosis inhibitor 5/ 70.1 2.2E+02 0.0048 35.5 17.8 229 300-569 22-278 (460)
113 COG5181 HSH155 U2 snRNP splice 70.0 2.3E+02 0.005 37.1 18.5 258 147-410 396-718 (975)
114 PF14911 MMS22L_C: S-phase gen 69.6 44 0.00096 41.4 12.4 185 96-287 139-370 (373)
115 KOG1967 DNA repair/transcripti 69.5 2.3E+02 0.005 38.8 19.1 127 239-366 881-1019(1030)
116 PF02985 HEAT: HEAT repeat; I 68.7 9 0.0002 30.1 4.2 29 382-410 2-30 (31)
117 COG5215 KAP95 Karyopherin (imp 68.4 3.7E+02 0.0081 35.1 20.7 316 6-369 384-761 (858)
118 PF05004 IFRD: Interferon-rela 66.5 1.6E+02 0.0034 35.8 16.2 67 648-714 46-114 (309)
119 PF10363 DUF2435: Protein of u 66.3 20 0.00044 35.7 7.2 84 268-357 9-92 (92)
120 PF05004 IFRD: Interferon-rela 66.3 1.2E+02 0.0026 36.9 15.1 150 263-412 87-260 (309)
121 KOG2051 Nonsense-mediated mRNA 66.0 42 0.0009 45.9 11.7 92 245-337 481-579 (1128)
122 KOG2038 CAATT-binding transcri 65.8 4.7E+02 0.01 35.4 23.3 67 343-410 305-371 (988)
123 PF13251 DUF4042: Domain of un 63.9 71 0.0015 35.9 11.6 130 278-410 2-175 (182)
124 PF05641 Agenet: Agenet domain 63.9 12 0.00026 35.0 4.8 35 1319-1354 3-40 (68)
125 KOG0212 Uncharacterized conser 63.5 4.5E+02 0.0099 34.4 36.3 283 118-411 12-326 (675)
126 KOG1517 Guanine nucleotide bin 62.5 2.3E+02 0.005 39.4 17.1 121 275-412 613-735 (1387)
127 PF05327 RRN3: RNA polymerase 62.1 76 0.0016 41.7 13.3 188 102-323 31-221 (563)
128 PF15057 DUF4537: Domain of un 61.7 16 0.00034 38.5 5.7 42 1320-1362 1-42 (124)
129 PF08167 RIX1: rRNA processing 61.3 59 0.0013 35.7 10.3 138 602-771 19-163 (165)
130 PF14500 MMS19_N: Dos2-interac 61.2 3.4E+02 0.0075 32.2 19.4 64 345-410 2-70 (262)
131 PF05804 KAP: Kinesin-associat 60.8 5.8E+02 0.013 34.7 21.4 164 545-715 464-649 (708)
132 KOG1058 Vesicle coat complex C 60.7 5.7E+02 0.012 34.6 33.2 144 256-411 14-165 (948)
133 KOG0211 Protein phosphatase 2A 60.5 27 0.00059 47.0 8.8 136 274-412 210-348 (759)
134 KOG0211 Protein phosphatase 2A 59.4 2.1E+02 0.0046 39.0 16.6 139 261-401 275-419 (759)
135 PF03378 CAS_CSE1: CAS/CSE pro 58.3 1.1E+02 0.0024 38.9 13.4 178 74-266 44-242 (435)
136 PF05918 API5: Apoptosis inhib 57.0 5.9E+02 0.013 33.6 27.6 122 603-730 19-140 (556)
137 PF08569 Mo25: Mo25-like; Int 56.4 4.5E+02 0.0097 32.5 17.6 88 266-354 213-313 (335)
138 KOG1241 Karyopherin (importin) 55.8 6.8E+02 0.015 34.0 28.1 157 254-411 355-532 (859)
139 PF12530 DUF3730: Protein of u 55.5 3.2E+02 0.007 31.8 15.6 165 586-756 19-190 (234)
140 KOG0644 Uncharacterized conser 55.4 13 0.00028 49.1 4.4 47 1316-1362 978-1036(1113)
141 PF00567 TUDOR: Tudor domain; 54.9 26 0.00056 35.0 5.9 48 1315-1363 50-98 (121)
142 KOG2032 Uncharacterized conser 54.0 4.2E+02 0.0092 34.1 16.7 240 120-371 114-371 (533)
143 KOG2393 Transcription initiati 53.6 29 0.00063 44.1 7.0 24 1511-1535 292-315 (555)
144 PF05918 API5: Apoptosis inhib 52.7 1.4E+02 0.0031 39.0 13.0 82 274-362 34-115 (556)
145 PF12830 Nipped-B_C: Sister ch 51.8 57 0.0012 36.5 8.4 70 341-411 7-76 (187)
146 KOG0168 Putative ubiquitin fus 51.6 1.9E+02 0.0041 39.2 13.7 103 50-157 328-440 (1051)
147 PLN03076 ARF guanine nucleotid 47.7 1.3E+03 0.028 34.9 31.7 157 48-218 1083-1257(1780)
148 PF11717 Tudor-knot: RNA bindi 47.6 45 0.00098 29.9 5.5 37 1319-1356 3-41 (55)
149 PF13251 DUF4042: Domain of un 47.2 1.2E+02 0.0026 34.2 9.9 98 271-371 49-174 (182)
150 COG5218 YCG1 Chromosome conden 47.2 8.2E+02 0.018 32.4 27.1 229 122-410 66-298 (885)
151 KOG1078 Vesicle coat complex C 46.4 9.4E+02 0.02 32.9 27.4 221 204-440 223-516 (865)
152 COG5537 IRR1 Cohesin [Cell div 45.7 1.1E+02 0.0025 39.7 10.3 129 273-412 286-428 (740)
153 KOG2933 Uncharacterized conser 45.7 1.2E+02 0.0026 36.8 9.9 162 244-410 107-278 (334)
154 KOG0166 Karyopherin (importin) 45.4 1.5E+02 0.0033 38.3 11.5 169 266-441 70-251 (514)
155 KOG1991 Nuclear transport rece 45.2 1.1E+03 0.023 33.1 43.7 296 164-478 102-495 (1010)
156 KOG1832 HIV-1 Vpr-binding prot 44.8 13 0.00027 49.3 2.1 24 842-865 752-775 (1516)
157 PF04118 Dopey_N: Dopey, N-ter 44.8 1.6E+02 0.0034 35.9 11.1 107 251-368 131-251 (307)
158 PF12530 DUF3730: Protein of u 43.5 5.8E+02 0.013 29.6 16.2 71 248-325 107-178 (234)
159 KOG2956 CLIP-associating prote 43.3 4.7E+02 0.01 33.5 14.8 164 165-331 302-476 (516)
160 KOG1240 Protein kinase contain 43.2 1.2E+03 0.027 33.4 20.7 136 271-411 586-727 (1431)
161 KOG1077 Vesicle coat complex A 42.7 96 0.0021 41.0 9.1 120 246-370 307-432 (938)
162 KOG1832 HIV-1 Vpr-binding prot 40.9 16 0.00034 48.5 2.1 18 143-160 123-140 (1516)
163 cd00256 VATPase_H VATPase_H, r 40.3 9.1E+02 0.02 31.0 20.6 63 67-133 65-131 (429)
164 KOG1991 Nuclear transport rece 40.3 1.2E+03 0.027 32.5 27.5 111 248-361 445-566 (1010)
165 KOG2062 26S proteasome regulat 40.1 1.2E+02 0.0027 40.3 9.5 88 278-377 502-590 (929)
166 KOG2153 Protein involved in th 39.8 80 0.0017 41.3 7.8 63 320-382 302-365 (704)
167 PF04826 Arm_2: Armadillo-like 38.5 1.3E+02 0.0029 35.5 9.0 135 273-407 24-161 (254)
168 KOG2160 Armadillo/beta-catenin 38.2 3.3E+02 0.0072 33.6 12.3 88 270-362 132-229 (342)
169 KOG4413 26S proteasome regulat 38.2 2.1E+02 0.0045 34.8 10.3 129 275-410 53-201 (524)
170 PF13764 E3_UbLigase_R4: E3 ub 38.1 8E+02 0.017 33.9 17.0 165 12-199 44-236 (802)
171 KOG0943 Predicted ubiquitin-pr 38.0 66 0.0014 44.2 6.8 37 1023-1059 1318-1354(3015)
172 PF12074 DUF3554: Domain of un 37.9 1.5E+02 0.0032 36.3 9.7 87 319-409 3-90 (339)
173 KOG1820 Microtubule-associated 37.2 6.5E+02 0.014 34.8 16.0 57 314-370 382-442 (815)
174 COG5219 Uncharacterized conser 36.3 6.1E+02 0.013 35.1 14.7 195 98-329 1036-1264(1525)
175 PF14228 MOR2-PAG1_mid: Cell m 35.7 1.6E+03 0.034 32.4 28.5 125 278-410 486-611 (1120)
176 PF14664 RICTOR_N: Rapamycin-i 35.0 1.2E+02 0.0025 37.9 8.2 112 263-376 26-142 (371)
177 COG5064 SRP1 Karyopherin (impo 34.7 2.8E+02 0.006 34.1 10.6 137 264-407 73-251 (526)
178 PF08506 Cse1: Cse1; InterPro 34.5 7.6E+02 0.017 30.9 15.1 223 509-747 102-369 (370)
179 KOG2050 Puf family RNA-binding 34.4 6.5E+02 0.014 33.2 14.3 123 399-550 246-376 (652)
180 KOG3026 Splicing factor SPF30 33.7 41 0.00089 38.7 3.6 36 1317-1352 91-126 (262)
181 COG5116 RPN2 26S proteasome re 33.0 76 0.0016 40.8 6.0 62 312-377 525-587 (926)
182 PF08324 PUL: PUL domain; Int 32.9 1.8E+02 0.004 34.0 9.2 97 274-370 122-230 (268)
183 KOG0168 Putative ubiquitin fus 32.0 4.6E+02 0.01 35.9 12.8 183 593-778 243-440 (1051)
184 PF08605 Rad9_Rad53_bind: Fung 31.6 83 0.0018 33.6 5.3 56 1321-1381 14-69 (131)
185 KOG0567 HEAT repeat-containing 31.2 1E+03 0.022 28.7 14.6 32 381-412 219-252 (289)
186 KOG2160 Armadillo/beta-catenin 31.2 3.6E+02 0.0078 33.3 11.1 143 264-411 85-242 (342)
187 cd03568 VHS_STAM VHS domain fa 30.5 1.3E+02 0.0029 32.5 6.8 90 603-698 36-132 (144)
188 KOG3723 PH domain protein Melt 29.9 1.2E+03 0.025 30.8 15.2 201 555-769 65-281 (851)
189 KOG1243 Protein kinase [Genera 29.8 2E+02 0.0044 38.2 9.3 148 256-405 324-472 (690)
190 PF11707 Npa1: Ribosome 60S bi 29.0 1.9E+02 0.0042 35.3 8.7 132 254-409 48-214 (330)
191 KOG4224 Armadillo repeat prote 29.0 7.6E+02 0.017 30.8 13.0 147 261-410 207-364 (550)
192 KOG0413 Uncharacterized conser 28.6 1.9E+03 0.04 31.0 37.4 100 265-368 437-536 (1529)
193 PF08569 Mo25: Mo25-like; Int 28.5 1.2E+03 0.026 28.8 15.6 168 229-410 49-239 (335)
194 PF00514 Arm: Armadillo/beta-c 28.4 90 0.002 25.8 4.0 29 342-370 12-40 (41)
195 PF12830 Nipped-B_C: Sister ch 28.1 4.4E+02 0.0094 29.6 10.6 66 303-373 8-76 (187)
196 PF11919 DUF3437: Domain of un 27.5 1.4E+02 0.0029 30.0 5.7 57 355-412 2-61 (90)
197 KOG1293 Proteins containing ar 27.4 3.6E+02 0.0078 35.8 10.7 172 267-449 336-524 (678)
198 cd03561 VHS VHS domain family; 26.8 5E+02 0.011 27.4 10.3 81 329-411 26-114 (133)
199 PF02237 BPL_C: Biotin protein 26.4 1.6E+02 0.0035 25.7 5.4 39 1319-1360 2-40 (48)
200 PF08767 CRM1_C: CRM1 C termin 25.9 4.3E+02 0.0094 32.2 10.9 161 148-312 9-211 (319)
201 KOG0162 Myosin class I heavy c 25.7 6.4E+02 0.014 34.0 12.3 219 163-413 455-711 (1106)
202 KOG3064 RNA-binding nuclear pr 25.4 24 0.00053 40.9 0.1 18 1549-1566 244-261 (303)
203 KOG0946 ER-Golgi vesicle-tethe 24.5 3.3E+02 0.0072 36.8 9.7 92 242-373 106-197 (970)
204 PF14911 MMS22L_C: S-phase gen 24.4 7E+02 0.015 31.3 12.2 123 18-160 223-347 (373)
205 PF14664 RICTOR_N: Rapamycin-i 23.7 1.3E+03 0.028 29.0 14.5 199 204-410 44-270 (371)
206 cd06561 AlkD_like A new struct 23.2 3.1E+02 0.0067 30.3 8.3 76 317-400 120-195 (197)
207 PF06685 DUF1186: Protein of u 22.3 1E+03 0.022 28.3 12.4 101 244-356 100-203 (249)
208 PF12612 TFCD_C: Tubulin foldi 21.5 3.3E+02 0.0072 30.6 8.2 111 70-198 21-137 (193)
209 cd00280 TRFH Telomeric Repeat 21.1 4.4E+02 0.0095 30.0 8.6 103 47-157 30-139 (200)
210 KOG3687 Tuberin - Rap/ran-GTPa 20.7 2.5E+03 0.055 29.8 18.6 342 80-435 346-782 (1697)
211 KOG2122 Beta-catenin-binding p 20.7 3E+03 0.065 30.7 23.5 58 279-336 211-271 (2195)
212 PF10266 Strumpellin: Heredita 20.4 1.7E+03 0.037 31.9 15.6 22 632-653 583-604 (1081)
213 KOG2140 Uncharacterized conser 20.3 3.6E+02 0.0079 34.9 8.6 110 709-837 219-331 (739)
214 PF08713 DNA_alkylation: DNA a 20.3 9.6E+02 0.021 26.7 11.7 121 203-335 65-187 (213)
215 PF00514 Arm: Armadillo/beta-c 20.0 1E+02 0.0022 25.5 2.8 30 261-290 11-40 (41)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.3e-136 Score=1318.56 Aligned_cols=1068 Identities=30% Similarity=0.464 Sum_probs=901.3
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCC
Q 000361 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1617)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1617)
..-|-+....|++++||++||++|+.||++++|++ .+.+++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34466666778999999999999999999999996 6899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000361 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1617)
Q Consensus 90 daPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1617)
||||++.||+|||++|++||.||.|+.+|||.||+||||+||.||.|++|.|.+|++++.+||++||++++.+||.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555699999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchH
Q 000361 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1617)
Q Consensus 170 ~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~---~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~-~~~~~~~~~ 245 (1617)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|+.||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 456667799
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
++++||.+||+...+..+..+++.|+.|++++||..+|.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999888889999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-hhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000361 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1617)
Q Consensus 406 ~LY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~-~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1617)
++|+. ||..++.+...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 555666677888999999999999999998664 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000361 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1617)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~klLk~~id~ 561 (1617)
..|+++|.++|.+|+.||.+++..+.++ .++++...|..++..||||.......++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788889999999999999999999999653 467888899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000361 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1617)
Q Consensus 562 ~t~~~t~~~a~kELlkkL~~----~~~~~e~l~~Ll~R~S~li~Nk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1617)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666554 4557788899999999988877 777777765432111 111 112344
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000361 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1617)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKy 705 (1617)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|.......+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 5689999999999988876 46666666666666778899999888854444445566778899999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhcccccc
Q 000361 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKI 779 (1617)
Q Consensus 706 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~ap~vfe~-~~~eI~~fiik~IL~~~~~~ 779 (1617)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+ ....+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876422 3445666666665433 59999999999999999966655 57789999999998888887
Q ss_pred CCC-CCCCCCC---c-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhH
Q 000361 780 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1617)
Q Consensus 780 ~~~-~~~~W~d---~-se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEi~~~~~tp~~~ksrLR 851 (1617)
++. ....|+. . +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|+...+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 6677865 2 45688899999999999999866421 111122566777765 68999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000361 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK 929 (1617)
Q Consensus 852 LaAa~~lLKLAr~--~d~~i~~~~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~L~~kY~~lflla~~a~ep~~~~e~k 929 (1617)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+..... ..-+
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~ 956 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANK 956 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHH
Confidence 9999999999976 578899999988888899999999999999999999999999999999988653311100 0001
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhhhcCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCccc
Q 000361 930 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV 1009 (1617)
Q Consensus 930 ~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIhlLAHH~~pd~ee~~d~~~~~~~~~~L~F~L~~L~~~~~~~ 1009 (1617)
....+-...+++.+.....+.++.. +...|||+.+|.+|++||| |++....++..|-.+..++||.++.|...+
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence 1111112222233333333333221 5688999999999999999 999888899999999999999999996431
Q ss_pred cccccccchH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCcccccCCC
Q 000361 1010 KSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1083 (1617)
Q Consensus 1010 ~~~~~~~eNi--SlLy~la~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~~~-k~w~lq~yPGkV~LP~~LF~p~~ 1083 (1617)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||++.||..+|.+..
T Consensus 1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 232 2333444556677787643 3456799999999999998775 67999999999999999999876
Q ss_pred CCCCcchhhcccccccccchh
Q 000361 1084 KKEGDDSLASERQTWLADESV 1104 (1617)
Q Consensus 1084 s~~~~ea~~~~~k~yLpde~~ 1104 (1617)
+ ..-...++|+|+++-
T Consensus 1104 ~-----kn~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1104 D-----KNFINNKIYIPEETE 1119 (1266)
T ss_pred h-----hhhccccccCCchhc
Confidence 3 234568999999843
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=5.3e-10 Score=148.84 Aligned_cols=220 Identities=29% Similarity=0.365 Sum_probs=194.5
Q ss_pred HHHHHccccCCCCCC--HHHHHHHHHHH--------HHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHH
Q 000361 8 QLKEVGSKLETPPST--KDGLVKLLKQA--------ATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVA 77 (1617)
Q Consensus 8 ~l~~~g~kL~~~~~s--~~eLlkrL~~l--------~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vA 77 (1617)
.+...|.|...++.+ +++||..+-+. ...|..+.|+..-.+.+.+++++..|+.=.+..|++-++.+-..
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 566789999999988 89999998876 67788888877667889999999999999999999999999999
Q ss_pred HHHHHHHh--hcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHH--HHHHHHHhhhhhhhhcc---CCchHHHHH
Q 000361 78 TCICEITR--ITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV--VILETLAKYRSCVVMLD---LECDELVNE 150 (1617)
Q Consensus 78 cCLadIlR--I~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~--~lLe~la~vks~vl~~D---L~~~~Li~~ 150 (1617)
.||.+++| |.+|..||+++.++.||..|+..+..|.|+.+..|.... .+|+.++.+++|+.+++ +.|.++...
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~ 568 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT 568 (1266)
T ss_pred HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999 999999999999999999999999999999775544443 59999999999999999 458999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcH---HHHHHHHHHHHHhhhhhHHHHHHH
Q 000361 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND---TARRLAMNVIEQCAGKLEAGIKQF 227 (1617)
Q Consensus 151 lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~~---~a~~lA~~vi~~~~dkL~~~i~q~ 227 (1617)
||..||.+++..++.+++..|..+|++.|.+ |+-+++..|...+..+... .+..++..||..|+-++..++.+-
T Consensus 569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ 645 (1266)
T KOG1525|consen 569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA 645 (1266)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999 8888888888777554332 678899999999999998888776
Q ss_pred HHH
Q 000361 228 LVS 230 (1617)
Q Consensus 228 f~~ 230 (1617)
+..
T Consensus 646 ls~ 648 (1266)
T KOG1525|consen 646 LSS 648 (1266)
T ss_pred hhh
Confidence 654
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.90 E-value=2.8e-09 Score=92.60 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=36.5
Q ss_pred ccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000361 1318 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1361 (1617)
Q Consensus 1318 ~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdDgd~E~l~ 1361 (1617)
-.|.+|.+|||++..||+|.|++||+.++.|+|.|+||++..|.
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 48999999999999999999999999999999999999995543
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.63 E-value=0.0001 Score=96.57 Aligned_cols=390 Identities=12% Similarity=0.066 Sum_probs=208.7
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000361 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1617)
Q Consensus 269 ~eL~sdd~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L 347 (1617)
.+|.+.+...|..|++ +++-|.-+ -+...-|+++-+.+ .=.+..+|.-+--++..+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3444566777777765 56666543 35666566666544 344788888777776665555553 233557999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcccc
Q 000361 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1617)
Q Consensus 348 ~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 427 (1617)
.+=|.|+++.||.-|+.++|.+-... +-+.++..|..-+.|+.+-||+.|.-+++++|+..-. ....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-------lv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-------LFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-------cccccch
Confidence 99999999999999888886654433 2233556677778999999999999999999996421 1123456
Q ss_pred chHHHhhhhccCCCCchhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000361 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1617)
Q Consensus 428 IP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 507 (1617)
+|. +..+..+.|.. .+-..+ ..+..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nAl---------------~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNAA---------------AIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHHH---------------HHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333322 111110 01111110 0110 010 0 011122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000361 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1617)
Q Consensus 508 ~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~klLk~~id~~t~~~t~~~a~kELlkkL~~~~~--~ 585 (1617)
+ +=.|- .+++.|+..-|+. -.+.......++.+|...++ +
T Consensus 232 ---~-EW~Qi---~IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQL---YILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHH---HHHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 11111 1233333322221 11122233444444444332 5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHh-----hcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc
Q 000361 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAA-----QKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI 660 (1617)
Q Consensus 586 ~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~-----~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~~~~ 660 (1617)
++.++.+++-..+. +.+.+..++.++.. .....+ ..-.+..-|..|...+|.+|..+.+.+.-...|.. .
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~e--iqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-y 348 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAE--TQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-F 348 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCcc--HHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-H
Confidence 66666655443322 44444444433221 001112 22345666788899999999987655543334433 3
Q ss_pred chhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CC
Q 000361 661 IKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HL 739 (1617)
Q Consensus 661 ~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l 739 (1617)
+....|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.- ......++..|++-+.... ..
T Consensus 349 IK~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v 421 (746)
T PTZ00429 349 VKLEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELL 421 (746)
T ss_pred HHHHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhH
Confidence 677889999887632 11 1235566778888888899999999988666421 1223345555555554322 22
Q ss_pred chHHHHHHHHHhhccc
Q 000361 740 PAVLQSLGCIAQTAMP 755 (1617)
Q Consensus 740 ~t~L~sL~~Iaq~ap~ 755 (1617)
...+.++-.|.+..|.
T Consensus 422 ~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHCcc
Confidence 2345555566565664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00055 Score=90.18 Aligned_cols=549 Identities=15% Similarity=0.169 Sum_probs=291.3
Q ss_pred HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhccccc-CCChHHHHHHHHHHHHhhcCCCCCchhh-
Q 000361 223 GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQ- 300 (1617)
Q Consensus 223 ~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~-sdd~~~Rl~At~llG~mfs~~~~~~a~~- 300 (1617)
.+.|.+...+.-|+. ....+-+.+..+|+--| ++|.|.+.+. +.++++|..|.-++-|+++..-..+..+
T Consensus 5 ~l~qLl~~l~spDn~---vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNE---VRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHHHHhcCCCch---HHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 344455454443321 22346777777888888 7777777777 7799999999999999987643333222
Q ss_pred cHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC-
Q 000361 301 FHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP- 378 (1617)
Q Consensus 301 y~~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~- 378 (1617)
-.++=...|.- ..-..+.||.+..+.+..|-.+-... .-++++..|..+.+++|+..|-.|+-.+..+...-.....
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22222222222 24578899999999888876654322 4579999999999999999999999998887653333333
Q ss_pred --HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcc-ccchHHHhhhhccCCCCchhHHHHhhccCC
Q 000361 379 --VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLF 455 (1617)
Q Consensus 379 --~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~-~wIP~~IL~~~Y~nd~~~~lvE~vL~e~Ll 455 (1617)
.+++..+..-|-|-...||-.|.++++.+.... +++......| .-+|+-|.-+-- .+
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i 215 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VI 215 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hh
Confidence 267788889999999999999999999876542 1222333344 455655543310 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcCC
Q 000361 456 PTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAE 532 (1617)
Q Consensus 456 P~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kL~~~i~~Ls~~fPD 532 (1617)
+.. .......++ ++|..++..-.+ ++..+...++++-+ .+..-++.+....-.+|-+++..-|-
T Consensus 216 ~~~-----d~~~a~~~l--------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 216 QDG-----DDDAAKSAL--------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred hcc-----chHHHHHHH--------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 000 000000111 111111111111 22223333333321 11111233333333345555554332
Q ss_pred chHHHHHHHHHHhhccHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Q 000361 533 PAKAEENFLILDQLKDANVWKILMNLLDSN-----------------TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMK 595 (1617)
Q Consensus 533 p~Ka~~~L~kf~klnD~Ri~klLk~~id~~-----------------t~~~t~~~a~kELlkkL~~~~~~~e~l~~Ll~R 595 (1617)
..| +...+-++=+-.++.-+.+.+ +.+.-+..+.+.+-..||++..+.-++.
T Consensus 283 ~~k------~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~----- 351 (1075)
T KOG2171|consen 283 MCK------KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE----- 351 (1075)
T ss_pred Hhh------hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH-----
Confidence 222 222222222223333332222 2333444445555555555433222222
Q ss_pred hhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH----HHhhccccchhhHHHHHHH
Q 000361 596 CSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN----LLKEENEIIKEGILHVLAK 671 (1617)
Q Consensus 596 ~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~----lL~~~~~~~~~~aLkiLak 671 (1617)
+++.++. +.+-.....++--|-.|+.=|+.+..++..+++. .|.|..|.+...++.++.+
T Consensus 352 ---------~l~~~l~-------S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ 415 (1075)
T KOG2171|consen 352 ---------ALEAMLQ-------STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQ 415 (1075)
T ss_pred ---------HHHHHhc-------CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 2222221 1211222334444555666667666666655544 4555667788889999987
Q ss_pred hhcchHhhhhcc-cchHHHH-HHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHH----hhhhc-C--CCchH
Q 000361 672 AGGTIREQLAAT-SSSVDLL-LERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVD----MLEEK-T--HLPAV 742 (1617)
Q Consensus 672 ~~k~~~e~~~~~-~s~l~~~-L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~----~L~~~-~--~l~t~ 742 (1617)
.+..+...+... ...+.+. +..+-..++++.-.||+.+|....-.--...++-++..|+. .|..+ + -...+
T Consensus 416 ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 416 MSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred hhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 664432111110 1112212 22233457788888998888755432211223334444444 34322 2 44567
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHH
Q 000361 743 LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDD 822 (1617)
Q Consensus 743 L~sL~~Iaq~ap~vfe~~~~eI~~fiik~IL~~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ 822 (1617)
+++||.+|.-+-.-|..+-+.++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+.+.+.+..
T Consensus 496 vtaIasvA~AA~~~F~pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHH
Confidence 889999999998889998889999875 45544321 1122333343 5555544444444456777777
Q ss_pred HHHHHHHhhccCccccCCC-CChhhHhHhHHHH
Q 000361 823 LLGILKSMLSYGEMSEDIE-SSSVDKAHLRLAS 854 (1617)
Q Consensus 823 ll~lL~~il~~GEi~~~~~-tp~~~ksrLRLaA 854 (1617)
++.+|-.+- +|+.....+ ++....+|-|++-
T Consensus 563 liqll~~~~-~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 563 LIQLLLELQ-GSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HHHHHHhhc-ccchhhccccHHHHHHHHHHHHH
Confidence 888865432 333332222 2334444444443
No 6
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.29 E-value=0.063 Score=72.93 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=105.0
Q ss_pred CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000361 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1617)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~ 375 (1617)
.|.+.|....+.-|+=..--.+.||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-++.......+
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 46676766666666666678999999999999998888776433467889999999999999999999999876554443
Q ss_pred CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhh-ccCCCCc
Q 000361 376 SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 443 (1617)
Q Consensus 376 ~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~-Y~nd~~~ 443 (1617)
.+ .+....+++|+.|--+.||+.||+.|-.+|-.+ +.|.-||..+-... .++|-+.
T Consensus 889 ~~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 889 LI-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 33 345678899999999999999999999999874 45666666655443 3566553
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=98.20 E-value=0.0042 Score=81.79 Aligned_cols=337 Identities=15% Similarity=0.103 Sum_probs=188.4
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444455567899999999999999999999999999999996543 2333456666667788999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....... +... ...+-
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-----l~l~---------------~~~~~ 222 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-----IESS---------------NEWVN 222 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-----hHHH---------------HHHHH
Confidence 999998888865333457788888899999999999999998875433221 1100 11111
Q ss_pred HHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCCCC--CCCHHH---HHHHHHHHHhcCCHHH
Q 000361 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPT--GFSVKD---RVRHWVRIFSGFDRIE 479 (1617)
Q Consensus 406 ~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~-~lvE~vL~e~LlP~--~~~~~~---R~~~ll~l~~~LD~~~ 479 (1617)
+++... .+.=.|-.-.||+++..-.+.. .-.+.+ .+.++|. ..++.- =++.++.+....++.
T Consensus 223 ~Ll~~L----------~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 223 RLVYHL----------PECNEWGQLYILELLAAQRPSDKESAETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred HHHHHh----------hcCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 122211 1122677778888763211111 111112 2223332 122211 122222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHh
Q 000361 480 MKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL 559 (1617)
Q Consensus 480 ~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~klLk~~i 559 (1617)
..... +.+.-.-++.+. ...++++=-.-..|..|...+|.-... ++..|+ |.
T Consensus 291 --~~~~~------~~rl~~pLv~L~-----ss~~eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff-------------~~ 342 (746)
T PTZ00429 291 --LIERC------TVRVNTALLTLS-----RRDAETQYIVCKNIHALLVIFPNLLRT--NLDSFY-------------VR 342 (746)
T ss_pred --HHHHH------HHHHHHHHHHhh-----CCCccHHHHHHHHHHHHHHHCHHHHHH--HHHhhh-------------cc
Confidence 11111 111112233331 123455544444566666666533221 233332 11
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC
Q 000361 560 DSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS 639 (1617)
Q Consensus 560 d~~t~~~t~~~a~kELlkkL~~~~~~~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~ 639 (1617)
-.+.+| ++...=+++-+| .|.++|..|++++..+..+.+......+..-+..++..+
T Consensus 343 ~~Dp~y--IK~~KLeIL~~L---------------------ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 343 YSDPPF--VKLEKLRLLLKL---------------------VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cCCcHH--HHHHHHHHHHHH---------------------cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 112222 222223444443 455566666666554433333345566666777788889
Q ss_pred CcCccccHHHHHHHHhhccccchhhHHHHHHHh
Q 000361 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKA 672 (1617)
Q Consensus 640 P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~ 672 (1617)
|.....++..|+++|....+. +..++.++..+
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~I 431 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDI 431 (746)
T ss_pred hHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHH
Confidence 999999999999999764333 33455555544
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.15 E-value=0.082 Score=68.89 Aligned_cols=366 Identities=15% Similarity=0.162 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 000361 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1617)
Q Consensus 21 ~s~~eLlkrL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~Lkd 100 (1617)
..+.+|..+|++-.-.| +.++...+.+.|+ ++|.-++.+|+-++.-||+=|.- --..++++.
T Consensus 24 MAtsDLm~eLqkdsi~L----------d~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL----------DDDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc----------cccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45667888877753333 2233445555554 47888999999999999875541 112345555
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcC-----CChhhHHHHHHHHH
Q 000361 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASD-----DHPESVLSSMQTIM 175 (1617)
Q Consensus 101 IF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~-----~~~~~V~~~m~~IL 175 (1617)
+-.=+..-. +++.+.--|.-...|...++++.=++ ...+-..+|+.|...... +....+.-..++||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 443333321 23333333344455555555443110 123444444444443322 12223556678888
Q ss_pred HHHhcccccccH----HHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC--CCCCCCcch-HHHH
Q 000361 176 IVLLEESEDIQE----DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEV 248 (1617)
Q Consensus 176 ~~vI~Ese~ip~----~lLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~--~~~~~~~~~-~h~L 248 (1617)
..++.-..++-+ .++.+++-++..++. +-++=|.-.+..-+....+.+-.++.+.+..+ +.......+ +-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 888877665333 344444444433221 22333333333323333333333333333221 112222222 3344
Q ss_pred HHHHHhhcc----hhhhhhhhhhcccc---cCCChHHHHHHHHHHHHhhcCCCCCchhhc--------------------
Q 000361 249 IYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGSANNEQF-------------------- 301 (1617)
Q Consensus 249 i~eL~~~~P----~lL~~ViP~Le~eL---~sdd~~~Rl~At~llG~mfs~~~~~~a~~y-------------------- 301 (1617)
|-+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..-++..--
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 444544432 33455777777777 788999999999988865543211110000
Q ss_pred --HHHHHHHHhh------------hcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000361 302 --HSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1617)
Q Consensus 302 --~~~w~~fL~R------------~~D~s~~VR~~~v~~~~~iL~s~p~~--~~~~eii~~L~~rL~D~DekVR~aaV~a 365 (1617)
-+.=..|+.- =.|.+=.||.+..++...++.++++. .--+.+-..|..|+.|-+|.|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 1122222222 23556689999999999999887642 1113444688889999999999999999
Q ss_pred HHHhhhhhcCCC--------------C-------H---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000361 366 ICDVACHALNSI--------------P-------V---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1617)
Q Consensus 366 i~~la~~~l~~V--------------~-------~---elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~ 413 (1617)
+.++-......+ | . -+++.++.-+|+|+..-|.-|+..|..+-+.+..
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG 468 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc
Confidence 987754332211 1 1 2457889999999999999999999999998743
No 9
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.00 E-value=0.074 Score=72.27 Aligned_cols=341 Identities=18% Similarity=0.170 Sum_probs=199.3
Q ss_pred chhhhcCCCcchHHHHHHHHHHHHhh-cCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHH-hhhhhhh
Q 000361 61 QPVLLKHQDKDVKLLVATCICEITRI-TAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLA-KYRSCVV 138 (1617)
Q Consensus 61 ~~~LL~HkD~~Vr~~vAcCLadIlRI-~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la-~vks~vl 138 (1617)
.+++=+..+.+.|.+.---+-|+|=. +-|+=|=+..-|.-.-.++|.+|.. ...+-..=.-..-+|-++| ++|---+
T Consensus 588 ~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~-ks~~~sir~asLdlLG~IaarLrkd~v 666 (1692)
T KOG1020|consen 588 ERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSN-KSVDVSIRTASLDLLGTIAARLRKDAV 666 (1692)
T ss_pred HHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333335557888888888888764 4588887777777777778888762 1111111122233444443 2222111
Q ss_pred hc--------------cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc---CC
Q 000361 139 ML--------------DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG---RN 200 (1617)
Q Consensus 139 ~~--------------DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~---~~ 200 (1617)
.+ +.+ .+.=+..+++++.+....... .+=++.++.--..+..-..++.+.... .+
T Consensus 667 ~s~l~~g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~-------~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~ 739 (1692)
T KOG1020|consen 667 LSKLEQGSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTE-------ETALSEVYACHFYIAQWYRDTRLETILIMEEN 739 (1692)
T ss_pred HHHHhhccchhhhhhcccccccchhhhhHHHHHHHHHHhhh-------ccchhhHHHhhHHHHhHHHHHHHHHHHHHHhc
Confidence 11 000 001122233332222110000 000011111111233333333333221 11
Q ss_pred C------cH---HHHHHHHHHHHHhhhhhHHHHHHHHHHh--hcCCCCC-CCCcchHHHHHHHHHhhcchhhhhhhhhhc
Q 000361 201 K------ND---TARRLAMNVIEQCAGKLEAGIKQFLVSS--MSGDSRP-GHSHIDYHEVIYDVYRCSPQILSGVVPYLT 268 (1617)
Q Consensus 201 ~------~~---~a~~lA~~vi~~~~dkL~~~i~q~f~~~--l~~~~~~-~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le 268 (1617)
+ .. -.+.++.+.+..-..+++-++.+.-..- ..+.... .....+.-.+|+..-..+-++..+.=|+|.
T Consensus 740 kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk 819 (1692)
T KOG1020|consen 740 KDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLK 819 (1692)
T ss_pred cCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHH
Confidence 1 11 3356666666665555554443321110 0011011 111122333444444444444444444433
Q ss_pred cc---ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000361 269 GE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1617)
Q Consensus 269 ~e---L~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~ 345 (1617)
.- |..+.+.+|.+|.+.|..|...+. ..-.+|+.=.+--+|++|-+..||-+.|+.++.+++++|+ .+.+.-.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~ 895 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYD 895 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHH
Confidence 32 335679999999999999998864 5778999999999999999999999999999999999986 3668889
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000361 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1617)
Q Consensus 346 ~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V-~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~ 413 (1617)
.+..|+.|+---||..|++.++++....+... -+++...+..|+-|=--.|.+-+.+.+.++|-.=+.
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999766544422 235666777999999989999999999999986443
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.99 E-value=0.0019 Score=81.94 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000361 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1617)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1617)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.++++.+-. ..--+.+...-.+-..|.++.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 46667788899999999999999999999999999999999999662 223355666667777899999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000361 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1617)
Q Consensus 325 ~~~~~iL~s~p~~~~~~e-ii~~L~~rL~D~DekVR~aaV~ai~~l 369 (1617)
-++..+....|+. ... +++.|...|.|.|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888864 334 789999999999999999999999887
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.56 E-value=0.056 Score=68.77 Aligned_cols=239 Identities=14% Similarity=0.213 Sum_probs=157.8
Q ss_pred hHHHHHHHHHhhcchhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000361 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~-ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1617)
++-..+..+++..|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++....+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667888999999999988 799999999989999999999999999 33221122334555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000361 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1617)
Q Consensus 323 ~v~~~~~iL~s~p~~~~~--~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eA 400 (1617)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998765543332 22 3688999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000361 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1617)
Q Consensus 401 m~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 480 (1617)
+..|..+-..+. ..+. -+..++.++- ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-------------------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSNP----------PAVF-NQSLILFFLL-------------------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHCH----------HHHG-THHHHHHHHH-------------------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhcccc----------hhhh-hhhhhhheec-------------------CCCChhHHHHHHHHHhhcccccch
Confidence 988877765531 1111 1222222211 112333455555555555666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000361 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 533 (1617)
Q Consensus 481 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp 533 (1617)
+. +-..+.+|+. +..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l~------~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYLS------ELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHHH------HC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHHH------hccchhhhhhHHHHHHHHHhccCch
Confidence 32 2233444441 1234557778888888888877553
No 12
>PRK09687 putative lyase; Provisional
Probab=97.55 E-value=0.0005 Score=81.05 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=102.6
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R-~~D~s~~VR~~~v 324 (1617)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||.| +.+... -+.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRC----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4456666655432 2333344446788999999999999985 433221 12333333333 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000361 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1617)
Q Consensus 325 ~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~L 404 (1617)
...+++=...+.. ...++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9998752222111 2367788888999999999999999886532 355678888999999999999999999
Q ss_pred HHH
Q 000361 405 ADI 407 (1617)
Q Consensus 405 a~L 407 (1617)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 13
>PRK09687 putative lyase; Provisional
Probab=97.38 E-value=0.0014 Score=77.36 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.6
Q ss_pred hhhhhhccc-ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000361 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1617)
Q Consensus 262 ~ViP~Le~e-L~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~ 340 (1617)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.| . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666655 4567899999999999998432 21 11244556677778899999999999988642 1 1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 341 ~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
.+.+..|...|.|+|..||..|+.+++.+.. -+...+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 14
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.14 Score=65.96 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=93.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh
Q 000361 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 350 (1617)
Q Consensus 271 L~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~r 350 (1617)
|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=|..+++-
T Consensus 44 LdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 5567777777887766556654 435444 444555566667888887765555555556776433 236899999
Q ss_pred hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 351 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 351 L~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
|.|+...+|.-|..++..+-.. .|-.=+|-++.+-++|-.+-||+.|..++-++|..
T Consensus 117 L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 9999999999988887554332 23333677899999999999999999999999986
No 15
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.33 Score=62.91 Aligned_cols=353 Identities=18% Similarity=0.154 Sum_probs=201.5
Q ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000361 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1617)
Q Consensus 260 L~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~ 339 (1617)
|.-+.-.|...|++.+--+==+|.-+||.|++. .+++ ++.-+--.-.+-.++-||.+.+-|+-.++..-|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 334455778899999988889999999999975 2443 33333223333378999999999999999988863
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 000361 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1617)
Q Consensus 340 ~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~ 419 (1617)
.+-++.....+|.|-+..|=.++|.-+.++...+++ .+. +-|| ....|-.+-+.... +.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l~----~fr~--------l~~~lV~iLk~l~~----~~ 235 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----ALS----YFRD--------LVPSLVKILKQLTN----SG 235 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HHH----HHHH--------HHHHHHHHHHHHhc----CC
Confidence 446678999999999999999998888776655442 221 1111 12222222222211 11
Q ss_pred cch-hccccchHHHhhhhccCCCCchhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000361 420 INQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 498 (1617)
Q Consensus 420 ~~~-~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~ 498 (1617)
... -.+..||.=.|++ |.-|++.+++.-|+.+...+..+|.+..+
T Consensus 236 yspeydv~gi~dPFLQi----------------------------~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQI----------------------------RILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred CCCccCccCCCchHHHH----------------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 111 1244444444432 56677888888888887777777664433
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHHH
Q 000361 499 RYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRD 573 (1617)
Q Consensus 499 ~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~---Ka~~~L~kf~klnD~Ri~k-lLk~~id~-~t~~~t~~~a~k 573 (1617)
+ + +...-.-.+-|-.+++-|....|++. .|-..|-+|-.=.|.++.+ .|..++-. +.+...+..=|.
T Consensus 282 n----t----dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 282 N----T----DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred c----c----cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 0 0 11101112224445555555555544 3445556665445655433 33333322 334434444455
Q ss_pred HHHHHhcCCCc-h-HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHH
Q 000361 574 DLLKILGAKHR-L-YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 650 (1617)
Q Consensus 574 ELlkkL~~~~~-~-~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~-~~L 650 (1617)
-++-.|.++-+ + ..++. .++.++|.+||..+++++ |..+-.. ++-|++.. ..+
T Consensus 354 tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~eL------------------l~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKEL------------------LEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHHH------------------HHHHHhc-cHHHHHHHHHHH
Confidence 55666655421 1 11221 356678888888777643 3333333 44444432 333
Q ss_pred HHHHhhc---cccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000361 651 VNLLKEE---NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1617)
Q Consensus 651 i~lL~~~---~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~ 714 (1617)
+.+.+.= +-.-...++++|..+|.++++. ...-|.++.-+|.+..=+|+++-|.+..
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3333332 2233466788888888776544 3344666777787777778888876433
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.15 E-value=0.051 Score=74.11 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=80.8
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000361 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1617)
Q Consensus 264 iP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~ei 343 (1617)
+|.|..-|..++..+|..|+..||.+-..+ .+....+.-..|.++.||...+++...+ +. .+.
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a 839 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVA 839 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cch
Confidence 344445566678888888888888773321 1112233445677888888888887641 11 246
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 344 i~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
+..|...|.|++..||.+|+.+++.+ ..+......|...+.|....||++|...|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 67778888888888888888887664 234556667777888888888888888775
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=1.1 Score=57.26 Aligned_cols=369 Identities=17% Similarity=0.186 Sum_probs=201.9
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH--
Q 000361 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 322 (1617)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~-- 322 (1617)
+.+++-.+|+ -++|.-++|.|.+-|.+++=-+|-.++=.||-|--+=-.-|..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~--~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFG--DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 3556666654 367777899999999999999999999999977654211244455888888899999999999975
Q ss_pred H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCCh
Q 000361 323 V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKSV 394 (1617)
Q Consensus 323 ~--v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~V~~--elL~~l---aeR~rDKK~ 394 (1617)
| -.+++.++.-+++ .--.-++.+|..|++|..-+|--|||.++..+...+ -+.||. .+|.++ ...-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 2 3555555554432 223467889999999999999999999998886644 445553 122222 223334555
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhh--hhccCCCCc-------hhHHHHhhccCCCCCCCHHHHH
Q 000361 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 465 (1617)
Q Consensus 395 ~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~--~~Y~nd~~~-------~lvE~vL~e~LlP~~~~~~~R~ 465 (1617)
.|==.||-+||.--..+..+.. -++. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~----Yiqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPA----YIQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHH----HHHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 6666677777765544332110 0000 11221111 111223221 1466667778888887777776
Q ss_pred HHHHHHH----h--cCCH-------H-HHHHHHHHHHHHHHHHHHHHHHH------HH-HhhhcCCCcHHHHHHHHHHHH
Q 000361 466 RHWVRIF----S--GFDR-------I-EMKALEKILEQKQRLQQEMQRYL------SL-RQMHQDGDAPEIQKKILFCFR 524 (1617)
Q Consensus 466 ~~ll~l~----~--~LD~-------~-~~kal~~il~~k~~l~~~~~~~l------~l-~~~~~~~d~~ei~~kL~~~i~ 524 (1617)
-++++=+ . .-|+ . -+-+|.-+-+.-+.+-..+..++ ++ .+..+ ...|++.+---..+-
T Consensus 609 ~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-D~~peVRQS~FALLG 687 (885)
T KOG2023|consen 609 FRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-DEVPEVRQSAFALLG 687 (885)
T ss_pred HHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-cCChHHHHHHHHHHH
Confidence 6665411 0 0011 0 00111122222222222222221 11 11122 245666543222223
Q ss_pred HHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC
Q 000361 525 VMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN 602 (1617)
Q Consensus 525 ~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~klLk~~id~~--t~~~t~~~a~kELlkkL~~~~~~~e~l~~Ll~R~S~li~N 602 (1617)
-|++++++..+. +=..++.+|..-.+++ +-+..+.-|.-|+--+++.+. ..+++.++++.-. ++|
T Consensus 688 Dltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-iin 754 (885)
T KOG2023|consen 688 DLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-IIN 754 (885)
T ss_pred HHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hhc
Confidence 334444333332 1123444444444553 345566667888888887653 2566666665443 234
Q ss_pred hhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000361 603 KEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 651 (1617)
Q Consensus 603 ks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li 651 (1617)
+.+.+ +|++.. | --+-.+..++|+++..|.+..+
T Consensus 755 ~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 755 RQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred ccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHH
Confidence 33333 333211 1 1123367799999999876554
No 18
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.85 E-value=0.0021 Score=57.16 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=39.8
Q ss_pred ccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEccC-Ccceeeecc
Q 000361 1318 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1363 (1617)
Q Consensus 1318 ~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdD-gd~E~l~l~ 1363 (1617)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999977 999988754
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.82 E-value=0.033 Score=61.45 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000361 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1617)
Q Consensus 316 s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~ 395 (1617)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345678899999999999999999999999998888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000361 396 VKRYTMERLADIFRGC 411 (1617)
Q Consensus 396 VR~eAm~~La~LY~~~ 411 (1617)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=2.5 Score=53.41 Aligned_cols=430 Identities=15% Similarity=0.162 Sum_probs=234.0
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCC-CCCCcc-----hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHH
Q 000361 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1617)
Q Consensus 207 ~lA~~vi~~~-~dkL~~~i~q~f~~~l~~~~~-~~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~R 279 (1617)
++.+++++++ .+++...|.+...+.++.... ..+.++ -++-|=.+--.+.-.++.+|++. +...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceee
Confidence 3444444433 467888887777776654322 111111 12222222222333444555555 445788999
Q ss_pred HHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000361 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 280 l~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~---v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~De 356 (1617)
--|.+.+-.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.......-...+++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99999887776544457788889999999999999999999652 233444444333223356899999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC-C-----Ccc------
Q 000361 357 NVRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SIN------ 421 (1617)
Q Consensus 357 kVR~aaV~ai~~la~~-~l~~V--~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~-~-----~~~------ 421 (1617)
-+|..+|.-+.-+... .++-+ -.+++.-|..=+-|-...||..+=..|+.+-+....+.+. . ...
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 9999999988665431 11111 1245555666678999999999999999988876543221 0 000
Q ss_pred ----h--hccccchHHHhhhhccCCCCch-hHHHHhhccCCCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHH
Q 000361 422 ----Q--NEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEK 485 (1617)
Q Consensus 422 ----~--~~~~wIP~~IL~~~Y~nd~~~~-lvE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~k---al~~ 485 (1617)
. ..+-||-.- .++.....- ..-.+ ++.++|.-.+.++. ....+. +.+-++....+ .+..
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~i-l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ 336 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSGI-LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS 336 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhhh-hhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH
Confidence 0 013343111 112111111 22222 45678875444332 222221 11111211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHHHHH--HHHH-HhhccH------HHHH
Q 000361 486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN--FLIL-DQLKDA------NVWK 553 (1617)
Q Consensus 486 il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls---~~fPDp~Ka~~~--L~kf-~klnD~------Ri~k 553 (1617)
+-..+++|+.- +. +.+++. +.+||. ..+|...-...+ +..+ ..|-|+ +...
T Consensus 337 -------ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 337 -------IIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred -------HHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 12233333331 21 222333 345543 445544332111 2222 223322 1222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000361 554 ILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 633 (1617)
Q Consensus 554 lLk~~id~~t~~~t~~~a~kELlkkL~~~~~~~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~ 633 (1617)
++..++....++ ..++....|+.+..+...+.+.--.|..|.-++..|.++|=.-|..+-.. ..|-.+++...+.|+
T Consensus 400 lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln 476 (675)
T KOG0212|consen 400 LLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALN 476 (675)
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHH
Confidence 333333333332 22444455555555554455666668889999999999997766654332 234457777789999
Q ss_pred HHHhhCCcCccccHHHHHHHHhh-ccccchhhHHHHHHH
Q 000361 634 ILARFSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAK 671 (1617)
Q Consensus 634 ~IS~~~P~lFk~~~~~Li~lL~~-~~~~~~~~aLkiLak 671 (1617)
.|--+.|++| +|-+.|++ .++.. ......|++
T Consensus 477 ~iLlTStELf-----~LR~~Lk~lsn~es-~~lF~cLy~ 509 (675)
T KOG0212|consen 477 TILLTSTELF-----QLRNKLKDLSNEES-QNLFCCLYR 509 (675)
T ss_pred hhhcccHHHH-----HHHHHHHhccChhh-hHHHHHHHH
Confidence 9999999999 67777775 22221 234555654
No 21
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=4.1 Score=55.39 Aligned_cols=438 Identities=18% Similarity=0.164 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCCc---hhhcHH-HHHHHHhhhcCCChh
Q 000361 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSAN---NEQFHS-VFSEFLKRLTDRIVA 318 (1617)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~--~~~~---a~~y~~-~w~~fL~R~~D~s~~ 318 (1617)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+. .++-++ +-..+..|+.|+++-
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~ 374 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAY 374 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4578899999999999998888888899999999999999999987642 1111 122222 333444455555555
Q ss_pred HHHHHHHHhHHHHhcC--CCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000361 319 VRMSVLEHVKSCLLTD--PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1617)
Q Consensus 319 VR~~~v~~~~~iL~s~--p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~V 396 (1617)
||..+++-...|..-| |-+ -.. +++..++.|+-||..-|
T Consensus 375 vRskVLqv~~~l~~~~s~p~~-~~~--------------------------------------eV~~la~grl~DkSslV 415 (1251)
T KOG0414|consen 375 VRSKVLQVFRRLFQQHSIPLG-SRT--------------------------------------EVLELAIGRLEDKSSLV 415 (1251)
T ss_pred HHHHHHHHHHHHHHccCCCcc-HHH--------------------------------------HHHHHHhcccccccHHH
Confidence 5555444443322222 111 112 34455556666666666
Q ss_pred HHHHHHHHHHHHHH------------------hhhhccC--CCcchhccccchHHHhhhhccCCCCchhHHHHhhccCCC
Q 000361 397 KRYTMERLADIFRG------------------CCLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFP 456 (1617)
Q Consensus 397 R~eAm~~La~LY~~------------------~~~~~~~--~~~~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP 456 (1617)
|+.||..+..+-.. +....++ .+...-.=..+++--.. -|..-.. .++..=+..--|
T Consensus 416 Rk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~q 492 (1251)
T KOG0414|consen 416 RKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKNQ 492 (1251)
T ss_pred HHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhccc
Confidence 66666666655443 2221110 00000000000000000 0000000 000000000001
Q ss_pred CCCCHHH--HHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHhh
Q 000361 457 TGFSVKD--RVRHWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSRS 529 (1617)
Q Consensus 457 ~~~~~~~--R~~~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kL~~~i~~Ls~~ 529 (1617)
....... ---.+..-....+.. ..+++.+++...-++...|.+-+... +..-++...+|+.-|... .++..
T Consensus 493 ~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~~ 570 (1251)
T KOG0414|consen 493 LESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCKQ 570 (1251)
T ss_pred cccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHH
Confidence 1000000 000000000011111 11233333333333333344333331 122234556676655543 23445
Q ss_pred cCCchHHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHH
Q 000361 530 FAEPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLSM 594 (1617)
Q Consensus 530 fPDp~Ka~~~L~kf~kl---nD~Ri~klLk~~-------id~~t~~~t~~~a~kELlkkL~~-----~~~~~e~l~~Ll~ 594 (1617)
| +-.-|+.++++.-.| +|..++.++-.| .+++..-.+.....+-|++.+-+ .+++-+.+..|+.
T Consensus 571 F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~ 649 (1251)
T KOG0414|consen 571 F-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA 649 (1251)
T ss_pred h-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh
Confidence 5 345566677766554 566666555555 34445544543333444444322 2333333333333
Q ss_pred hhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhc
Q 000361 595 KCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1617)
Q Consensus 595 R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k 674 (1617)
--.|+...|..|..+......+........++.+|-++|...|++-..+.+.|++.=.. .+.....+|..++.++-
T Consensus 650 ---~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~~ 725 (1251)
T KOG0414|consen 650 ---RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIVD 725 (1251)
T ss_pred ---CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhhc
Confidence 45678888888888764433332211223467899999999999999998887765332 35556667777765541
Q ss_pred -chHh------hh-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000361 675 -TIRE------QL-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1617)
Q Consensus 675 -~~~e------~~-~~~~s~l~~~L~~lal~Gtp-------~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~ 732 (1617)
.+.+ .+ .+....+...|+.+-..|-+ .-|-.|+.+|..+...... ....|++.+.++
T Consensus 726 ~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~~~~ 797 (1251)
T KOG0414|consen 726 PRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKLLKQ 797 (1251)
T ss_pred ccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 1110 00 12234567777777766421 5567788888877775542 223344444443
No 22
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=3.3 Score=53.49 Aligned_cols=159 Identities=22% Similarity=0.293 Sum_probs=107.3
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000361 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1617)
Q Consensus 217 ~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~ 296 (1617)
++++-..+..|++++-.-+. ..+ ++.+.+-+|=--+.+.+-.+|-...++|..+....+.-
T Consensus 59 ~dRIl~fla~fv~sl~q~d~-----e~D--------------lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei 119 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDK-----EED--------------LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI 119 (892)
T ss_pred HHHHHHHHHHHHHhhhccCc-----hhh--------------HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc
Confidence 46666777788877532210 011 22222223333355789999999999999988743211
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcC
Q 000361 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALN 375 (1617)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL-~D~DekVR~aaV~ai~~la~~~l~ 375 (1617)
=-.-|--+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|..-+ +||.+.||.+|.-.|
T Consensus 120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~liqnDpS~EVRRaaLsnI--------- 188 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKDLIQNDPSDEVRRAALSNI--------- 188 (892)
T ss_pred CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHHHHhcCCcHHHHHHHHHhh---------
Confidence 112344455588999999999999999999876 333333 23346666666544 899999999977666
Q ss_pred CCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 376 SIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 376 ~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
.++..++-.+.+|.||=+..+|+-+-.++.
T Consensus 189 ~vdnsTlp~IveRarDV~~anRrlvY~r~l 218 (892)
T KOG2025|consen 189 SVDNSTLPCIVERARDVSGANRRLVYERCL 218 (892)
T ss_pred ccCcccchhHHHHhhhhhHHHHHHHHHHhh
Confidence 456677778899999999999997655444
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.73 E-value=1.6 Score=57.59 Aligned_cols=544 Identities=17% Similarity=0.160 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--C-CCCCCCcchH-HHHHHHHHhhcchhhhhhhhhhcccccCC--C--
Q 000361 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--D-SRPGHSHIDY-HEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 275 (1617)
Q Consensus 204 ~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~--~-~~~~~~~~~~-h~Li~eL~~~~P~lL~~ViP~Le~eL~sd--d-- 275 (1617)
.++.+-..+++...+-|..++-..+..+++. | +..++..+.+ --+..-|-.+.|....+-+|-|..-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 6678888888888777777776655555542 2 1122222222 23344455667777777666554433211 1
Q ss_pred hHHHHHHHHHHHHhhc-----CC--CCCchhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000361 276 LDTRLKAVGLVGDLFA-----VP--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1617)
Q Consensus 276 ~~~Rl~At~llG~mfs-----~~--~~~~a~~y~~~w~~fL~R~--~D~s~~VR~~~v~~~~~iL~s~p~--~~~~~eii 344 (1617)
-.+--.|..+.+.+.. .+ +.++......+|.+-+.|+ +|.+-+||...+.+.++++.+-.+ +.+.+-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 2222223333333332 11 3455566688888888886 699999999999999998876433 23445677
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000361 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1617)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 420 (1617)
..|++||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+.. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~ 690 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-EL 690 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 88899986 578899999999999985543 334567777777777666678888777777777766322110 01
Q ss_pred chhccccchHHHhhhhccCCCCchhHHHHhhccCC--CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Q 000361 421 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRVRHWVRIFSG-----FDRIEMKALEKILEQKQRL 493 (1617)
Q Consensus 421 ~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~Ll--P~~~~~~~R~~~ll~l~~~-----LD~~~~kal~~il~~k~~l 493 (1617)
...-+..||+-|- ..|.+.-..--.+..+++ |...-.+-+-..+-++.+. +-..+..++..++..-..-
T Consensus 691 ~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 691 LEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 1112344444332 223221111111111111 1110011111111111111 1111122222221111110
Q ss_pred HHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHH--hhccH-HHHHHHHHH-h
Q 000361 494 QQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL-L 559 (1617)
Q Consensus 494 ~~~~~~~l~l~~~~~--------~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka--~~~L~kf~--klnD~-Ri~klLk~~-i 559 (1617)
+..-..|..+....+ ++-....--.+.+++..|+..||+-.++ ..-.+-|. +.+|. ++|-+|..= +
T Consensus 767 ~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 767 KEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred CCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 111011222211111 1111222234778889999999965554 33344444 34443 455544221 1
Q ss_pred cCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 000361 560 DSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDILGIL 635 (1617)
Q Consensus 560 d~~--t~~~t~~~a~kELlkkL~~~~~~~e~l~~Ll~R~S~li~N--ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~I 635 (1617)
+.. .++..- ...-++.-++.+ ..|....-.|-...+..+ ...+|.|+..+.... . .++ ---|-|...|
T Consensus 847 gr~~~~s~~~e--~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp--k-~Qy-LLLhSlkevi 918 (1233)
T KOG1824|consen 847 GRRKDLSPQNE--LKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQP--K-RQY-LLLHSLKEVI 918 (1233)
T ss_pred ccCCCCCcchh--hHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch--H-hHH-HHHHHHHHHH
Confidence 111 111110 011122223322 234444444444444441 235677777664311 1 111 1124577789
Q ss_pred HhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHH---HHHHHHHHHh
Q 000361 636 ARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYAVHALAA 712 (1617)
Q Consensus 636 S~~~P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~q---AKyAvr~Laa 712 (1617)
+...+..|+..++.+-.+|..+-+..-+++=-+++.|-|.+- -...+++.+.|+.+-..|.+.. +=-||+..
T Consensus 919 ~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs-- 993 (1233)
T KOG1824|consen 919 VSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS-- 993 (1233)
T ss_pred HHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheeeee--
Confidence 999999999999999999988555455566566666644322 1224578899988877776532 22223321
Q ss_pred hcCCCccchHHHHHH-HHHHh---hhhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHHH
Q 000361 713 ITKDDGLKSLSVLYK-RLVDM---LEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIK 769 (1617)
Q Consensus 713 ~~~~~~~~~~~~L~~-~L~~~---L~~~~-~l-~t~L~sL~~Iaq~ap~vfe~~~~eI~~fii 769 (1617)
+++.... +..+++ .|-+- +.+.+ +. -..|+++-..+.+-|....+--.++...++
T Consensus 994 isd~p~~--id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 994 ISDQPQP--IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred ecCCCCc--cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 2222221 112222 22222 22211 11 224677777777777766655555544443
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.61 E-value=0.012 Score=56.30 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000361 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1617)
Q Consensus 308 fL~R~-~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~la 386 (1617)
++... +|.++.||...+...+.+ ...+++..|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999988888731 23578999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000361 387 ERLRD-KSVLVKRYTMERLA 405 (1617)
Q Consensus 387 eR~rD-KK~~VR~eAm~~La 405 (1617)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87777 45678999999986
No 25
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.61 E-value=0.0035 Score=56.85 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.5
Q ss_pred ccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEccC
Q 000361 1318 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1354 (1617)
Q Consensus 1318 ~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdD 1354 (1617)
-+|..|.+||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 26
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.59 E-value=0.0042 Score=53.35 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.3
Q ss_pred CCeEEEecCCCCceEEEEEEEecCCCCeeEEEccC-Ccceeeecc
Q 000361 1320 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1363 (1617)
Q Consensus 1320 G~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdD-gd~E~l~l~ 1363 (1617)
|..|-+.|++|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778899977 999988754
No 27
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.44 Score=60.74 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=80.3
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhhhc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000361 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1617)
Q Consensus 266 ~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y-~~~w~~fL~R~~-----D~s~~VR~~~v~~~~~iL~s~p~~~~ 339 (1617)
+|+.-|..+-+.+|.-||..|.++|+. |+.-- |.+-...|+... |.+++||++.++..+.++.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 445556778899999999999999985 55544 345667787764 67889999999999998876545555
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000361 340 APQILTALCDRLLDFDENVRKQVVAVICDV 369 (1617)
Q Consensus 340 ~~eii~~L~~rL~D~DekVR~aaV~ai~~l 369 (1617)
..+++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678889999999999999999999887543
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.45 E-value=0.015 Score=79.09 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.7
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000361 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1617)
Q Consensus 263 ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~e 342 (1617)
.++.|-..|..+++.+|..|++.||+.-. +.+...+...+.|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677788999999999999998631 23455566667899999999999998776433221
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 343 ii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999874
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=2.6 Score=54.99 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000361 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1617)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1617)
.|--+.+-.+-.|++-+--|-.+.--|...|.-+|--|.+++..|= +..--|=...+--+-..|.+|-||....
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3444555566689988888889999999999999999999987542 2333355666777788999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000361 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1617)
Q Consensus 325 ~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~L 404 (1617)
-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.++-++....++.|-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 9999988776653 34899999999999999999999999988777777765443 22223333332211123455556
Q ss_pred HHHHHHhhh
Q 000361 405 ADIFRGCCL 413 (1617)
Q Consensus 405 a~LY~~~~~ 413 (1617)
.+.-+.+..
T Consensus 242 ~RYAR~~l~ 250 (968)
T KOG1060|consen 242 TRYARHQLP 250 (968)
T ss_pred HHHHHhcCC
Confidence 555444443
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=1.7 Score=55.43 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=144.3
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH--
Q 000361 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 379 (1617)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~-- 379 (1617)
.+++-.-|..|.|+...||-+...+++.++..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 566666777889999999999999888766543322 23566777777777777777788888888877765554433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC-chhHHHHhhccCCCC
Q 000361 380 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1617)
Q Consensus 380 -elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~-~~lvE~vL~e~LlP~ 457 (1617)
+++..+.+.|-|-|+.||+.+++.|-++=... ++ ..+.-|=.+++.|+-++.-+ ...++.+....
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt---- 360 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGATT---- 360 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhccee----
Confidence 56788999999999999999999998876552 11 12444456677776444311 23444444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000361 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1617)
Q Consensus 458 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~ 537 (1617)
+....|+.+..-+--|+.+.-. - -+..++++...+|..+++..+||....
T Consensus 361 -------------FV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 361 -------------FVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred -------------eeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 3345555444333333322111 0 112344566667788888888888776
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000361 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1617)
Q Consensus 538 ~~L~kf~klnD~Ri~klLk~~id~~t~~~t~~~a~kELlkkL~~~ 582 (1617)
..|..+. +.+...+.+. .|++.+ .+.++.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 6665553 2233334344 466555 3345677778888754
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.33 E-value=0.39 Score=61.58 Aligned_cols=241 Identities=19% Similarity=0.281 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHh
Q 000361 165 ESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQF--------LVSS 231 (1617)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~-----ip~~lLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~--------f~~~ 231 (1617)
+.|....+..+..++...+. +..+++..|+..+..... .....|.+++...+.. ...+... +.++
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHH
Confidence 46777767777777776655 556777777777754332 3334444444443321 2222222 3333
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhcchhhhh-----hhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHH
Q 000361 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVF 305 (1617)
Q Consensus 232 l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~-~~~~a~~y~~~w 305 (1617)
+... ......++++++.+|.+..|+.+.. +++.+..+|..+|+-+|+.|+++|+.|-..+ |..+..+ ..++
T Consensus 169 ~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~ 245 (503)
T PF10508_consen 169 MSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIF 245 (503)
T ss_pred Hhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHH
Confidence 3221 1123457999999999999988765 5689999999999999999999999998855 3333322 2344
Q ss_pred HHHHhhhcCCC-----hhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----
Q 000361 306 SEFLKRLTDRI-----VAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---- 373 (1617)
Q Consensus 306 ~~fL~R~~D~s-----~~VR~~-~v~~~~~iL~s~p~~--~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~---- 373 (1617)
........+.. ..+.+- .+++.+.+...+|.. ...+.++..|...+...|...|..|+.+++.++.+.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 44444433332 222221 235555544434421 122456666676777899999999999999987522
Q ss_pred -c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 374 -L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 374 -l-~~V~~---elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
+ ..-+. .+|+.++.+++.-+..+|..|+..|+.++..
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999964
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.31 E-value=2.3 Score=54.58 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=89.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000361 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1617)
Q Consensus 263 ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~-s~~VR~~~v~~~~~iL~s~p~~~~~- 340 (1617)
++|.|-.-|..+|..+-..|.++|.+|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55666666788999999999999999998653 33333232334445555556 7789999999998887665542111
Q ss_pred --HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCCh
Q 000361 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSV 394 (1617)
Q Consensus 341 --~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~--l~~V-~~elL~~laeR~rDKK~ 394 (1617)
+.+++.+...|.+.|--||+.++..+.++|... ...+ ...++..+...+.+-+.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 137778888899999999999999999998722 2211 22345555555554443
No 33
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.21 E-value=3.8 Score=59.60 Aligned_cols=371 Identities=16% Similarity=0.120 Sum_probs=180.3
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000361 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1617)
Q Consensus 315 ~s~~VR~~~v~~~~~iL~s~p~~~---~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~V~~elL~~lae 387 (1617)
-..+++...+.+...+...+.+.- .....+..|...|...++.+|..++.+++-++..+-. .+....+-.|..
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999888877554332210 0012457888888889999999999999888753321 223345667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCCCCCCCHHHHHHH
Q 000361 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1617)
Q Consensus 388 R~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~~~~~~R~~~ 467 (1617)
.++..+..+|++|+..|+++=... . +.......-+-||. |++++-..+.+ ..+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~-~---qir~iV~~aGAIpp-LV~LL~sgd~~--~q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS-E---DIRACVESAGAVPA-LLWLLKNGGPK--GQE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc-H---HHHHHHHHCCCHHH-HHHHHhCCCHH--HHH---------------HHHHH
Confidence 888889999999999998874310 0 00011122355564 55554322221 000 01112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000361 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1617)
Q Consensus 468 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kln 547 (1617)
+..+..+-|.... ..++++. . ++.+.++.....++..|...-....-..+. .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG------SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh------hh
Confidence 2222222222211 1122221 0 122222222111222221111000000000 00
Q ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhh
Q 000361 548 DANVWKILMNLLDSNT--SFDQAFTGRDDLLKILG-AKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQF 624 (1617)
Q Consensus 548 D~Ri~klLk~~id~~t--~~~t~~~a~kELlkkL~-~~~~~~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~ 624 (1617)
+......|-.++...+ .++.+. .++-.+- ... +.. ..++....|+-|+..+.... ....
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa----~iLsnL~a~~~---d~~--------~avv~agaIpPLV~LLss~~---~~v~ 668 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAA----SVLADIFSSRQ---DLC--------ESLATDEIINPCIKLLTNNT---EAVA 668 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHH----HHHHHHhcCCh---HHH--------HHHHHcCCHHHHHHHHhcCC---hHHH
Confidence 0011111112222211 111111 1111111 111 000 11344455777777664321 1112
Q ss_pred HHHHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCC
Q 000361 625 MQSCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 699 (1617)
Q Consensus 625 ~~~a~eLL~~IS~~~P~-----lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gt 699 (1617)
...|..|....+...+. +=.+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|+
T Consensus 669 keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCC
Confidence 23444444444333322 1145689999999998878889999999987643211111123456889999999999
Q ss_pred hHHHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000361 700 RRQAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1617)
Q Consensus 700 p~qAKyAvr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sL~~Iaq~ 752 (1617)
++.=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 749 ~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 749 LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999999987775432111 1 112345555554222 3332 56666666664
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.88 E-value=0.077 Score=60.25 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.5
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000361 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1617)
Q Consensus 264 iP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~ei 343 (1617)
++.|...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...|+.+-+.. ..+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666777888899999999987666666667788889999999999999999999999888765411 245
Q ss_pred -HHHHHhhhCCChhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000361 344 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 344 -i~~L~~rL~D~DekVR~aaV~ai~~la~~~l---~~V~-----~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~ 412 (1617)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||..|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998877654333 2221 3467899999999999999999999999999763
No 35
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.84 E-value=4.6 Score=51.15 Aligned_cols=255 Identities=17% Similarity=0.173 Sum_probs=143.8
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000361 269 GELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1617)
Q Consensus 269 ~eL~sdd~~~Rl~At~llG~mfs~~~~~~-a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L 347 (1617)
--+.+.+-.+|....++|+.+.-.-+ .+ -.-|-.+--..++|.-|+.+.||.+.|.+...+= .-+.++...+...|
T Consensus 98 Rg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l 174 (885)
T COG5218 98 RGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLL 174 (885)
T ss_pred hcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHH
Confidence 34557899999999999998765433 11 1234455567889999999999999999876532 22334445566555
Q ss_pred Hhh-hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccc
Q 000361 348 CDR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFE 426 (1617)
Q Consensus 348 ~~r-L~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~ 426 (1617)
..- -+||-+.||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++.
T Consensus 175 ~~~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~l 233 (885)
T COG5218 175 KDIVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSL 233 (885)
T ss_pred HHHHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhc
Confidence 544 3899999999965554 455666777899999998888874 45544444321 2344
Q ss_pred cchHHHhhhhc-cCC--CC--chhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHH
Q 000361 427 WIPGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQ 495 (1617)
Q Consensus 427 wIP~~IL~~~Y-~nd--~~--~~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~ 495 (1617)
.|--+|+-.=+ -+| +. ...++-+....+.|.+.. ++.+...+|-. .++|+..+|..+.- .+.
T Consensus 234 si~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~ 306 (885)
T COG5218 234 SIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEK 306 (885)
T ss_pred cccceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhh
Confidence 55555542211 222 22 236777777777777643 33333333332 22233333221110 011
Q ss_pred HHHHHHHHHhhhcCCCcHHHHH-----HHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHH
Q 000361 496 EMQRYLSLRQMHQDGDAPEIQK-----KILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMN 557 (1617)
Q Consensus 496 ~~~~~l~l~~~~~~~d~~ei~~-----kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~klLk~ 557 (1617)
.+-.|+ +.... .+..-..+ =|...|.-|-.-||+..+....+..+-.+.++..|.-+-+
T Consensus 307 eFPe~~--w~d~T-~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cf 370 (885)
T COG5218 307 EFPEYL--WSDPT-EENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCF 370 (885)
T ss_pred hcHHHH--hhCch-HHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHH
Confidence 111111 00000 00000000 1222344444559999998888888888887764444433
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=13 Score=50.96 Aligned_cols=311 Identities=14% Similarity=0.136 Sum_probs=173.7
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhcc
Q 000361 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1617)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~D 141 (1617)
..+++-.-.-||--.|--+++|-|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34555666779999999999999987787 56678888887754 344444455688888887753221 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--c-cc-------HHHHHHHHHhhcCCCcH----HHHH
Q 000361 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQ-------EDLLVILLSALGRNKND----TARR 207 (1617)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~-ip-------~~lLd~IL~~l~~~~~~----~a~~ 207 (1617)
-+--+-+..||...+.- ++.+ |...-..-++.++...+ . .- +.++.++= .+.+.... .++.
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~-~~i~~~d~~~a~~~l~ 228 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQ-EVIQDGDDDAAKSALE 228 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhH-hhhhccchHHHHHHHH
Confidence 12234666777766642 2333 66666666777666654 1 11 11111111 11122222 2334
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhh--cCCCCCCCCc--chHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHH
Q 000361 208 LAMNVIEQCAGKLEAGIKQFLVSSM--SGDSRPGHSH--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1617)
Q Consensus 208 lA~~vi~~~~dkL~~~i~q~f~~~l--~~~~~~~~~~--~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At 283 (1617)
.--++...+..-+.|++.+.+.-++ .++ ...+.. ..+-++|.-+-+++|.++----| +-+ .+..
T Consensus 229 ~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~ 296 (1075)
T KOG2171|consen 229 ALIELLESEPKLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVP 296 (1075)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHH
Confidence 4444444444445555444332221 121 111122 23677888888887776543222 111 1111
Q ss_pred HHHHHhhcCCCCCchhhcHHHHHHHHh-hhcCCCh-hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHH
Q 000361 284 GLVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRK 360 (1617)
Q Consensus 284 ~llG~mfs~~~~~~a~~y~~~w~~fL~-R~~D~s~-~VR~~~v~~~~~iL~s~p~-~~~~~eii~~L~~rL~D~DekVR~ 360 (1617)
.++. |...-..+ .+|++ --.|.+- +.=.-+.+.+-+.|..+.. .-....+.+++..-|.-++++=|.
T Consensus 297 ~~l~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~ 366 (1075)
T KOG2171|consen 297 VLLA-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERH 366 (1075)
T ss_pred HHHH-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHH
Confidence 2222 22211111 45554 1111111 1112223333444444432 234567889999999999999999
Q ss_pred HHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 361 QVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 361 aaV~ai~~la~~~l~~V---~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
|++.+|+.++.-..+.+ =..++..+..-+.|-.+.||-.|+..+|++=-..
T Consensus 367 AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 99999998875333322 2346788889999999999999999999886554
No 37
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.42 E-value=0.008 Score=68.94 Aligned_cols=69 Identities=23% Similarity=0.474 Sum_probs=52.6
Q ss_pred ccccCCCCCCcccCCeEEEecCCCCceEEEEEEEecC-CCCeeEEEccCCcceeeecccceEEEecCCCCCCcccc
Q 000361 1307 TTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1381 (1617)
Q Consensus 1307 ~~~~~~~~~~~~vG~ri~v~Wp~D~~~Y~G~v~~y~~-~~~~H~v~YdDgd~E~l~l~~e~~~~~~~~~~~~~~~~ 1381 (1617)
...-+...++.+||++|..-||+++.||++.|+.|+. ...+|.+.|| ++--++-|+|++...-+..+++
T Consensus 149 ~~~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~------~~~~~~p~~wvdl~~I~p~DIr 218 (273)
T KOG4675|consen 149 VSSWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPD------INDCNDPWEWVDLREISPEDIR 218 (273)
T ss_pred CCccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccc------cccccCCccccccccCCHHhcc
Confidence 3344566778899999999999999999999999555 4567888787 4445666777777666666665
No 38
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.38 E-value=1.3 Score=52.12 Aligned_cols=231 Identities=12% Similarity=0.202 Sum_probs=150.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccC
Q 000361 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1617)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL 142 (1617)
..|.+.|..+|+-.--||++++-=..|+ ..+..|..-++.||.+-| .|. ..+...+.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~--------~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDH--------ACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccH--------hhHHHHHHHHHHHHhCcCC
Confidence 4678899999999999999999765444 478899999999999865 342 1233333333333333334
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHHHhhcCCCcH----HHHHHHHHHH
Q 000361 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1617)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~E----se~ip~~lLd~IL~~l~~~~~~----~a~~lA~~vi 213 (1617)
+ .+.+..+.+.+|+-+. ..++...+...-.||..+++. ...+..+.+.-++..+..++-. -+++|...|+
T Consensus 74 ~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 S-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2335566666665444 345666666666666666555 3456778888888777544432 7888888887
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---cchhhhhhhhhhcccccCCChHHHHHHHH
Q 000361 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1617)
Q Consensus 214 ~~~~dkL~~~i~q~f~~~l~------~~~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~eL~sdd~~~Rl~At~ 284 (1617)
..-. +.+.+..+|--+.. ..+.....++..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7655 46677777743221 1110011234445555555544 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-chhhcHHHHHHH
Q 000361 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1617)
Q Consensus 285 llG~mfs~~~~~-~a~~y~~~w~~f 308 (1617)
+|..++..-|.. +......+|...
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999865543 344457778754
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.35 E-value=0.051 Score=51.95 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.7
Q ss_pred hhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000361 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1617)
Q Consensus 264 iP~Le~eL-~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~e 342 (1617)
||.|-..| ...+..+|..|+.+||++- .+.+...++..+.|.++.||.+.+...+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235566666677999999999999999864 1 246
Q ss_pred HHHHHHhhhCCC-hhHHHHHHHHHHH
Q 000361 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1617)
Q Consensus 343 ii~~L~~rL~D~-DekVR~aaV~ai~ 367 (1617)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 5567999888763
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=20 Score=49.20 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC
Q 000361 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1617)
Q Consensus 121 ~~~~~lLe~la~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~ 199 (1617)
..-++.+.-+.+-..++-..|.+ |=.=+..+|..||.+- ....+.+.....+++..|+.++-.+-+.+-..++..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45577777777777777767766 5556677888888843 344567788889999999999888777766666665555
Q ss_pred CCcHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCcchHH-HHHHHHHhhcchhhhhhhhhhcccccC
Q 000361 200 NKNDTARRLA----MNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPYLTGELLT 273 (1617)
Q Consensus 200 ~~~~~a~~lA----~~vi~~~~dkL~~~i~q~f~~~l~-~~~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViP~Le~eL~s 273 (1617)
-+..++|.++ ..+|++|...-.|++..-+..+-. ..+........++ -+.-.+-..=|+.+++++|.=- ..
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~ 437 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HA 437 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cc
Confidence 5544555444 455566665545554444433221 1222222222443 4556677789999999999722 32
Q ss_pred C-ChHHHHHHHHHHHHhhc
Q 000361 274 D-QLDTRLKAVGLVGDLFA 291 (1617)
Q Consensus 274 d-d~~~Rl~At~llG~mfs 291 (1617)
+ ..-.|.=-.-+|-+-+-
T Consensus 438 ~s~~~~RsWLLPvLR~~i~ 456 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYII 456 (1176)
T ss_pred cccccchhHhHHHHHHhhc
Confidence 2 23344444444444443
No 41
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.35 Score=65.11 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=91.0
Q ss_pred HHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000361 304 VFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1617)
Q Consensus 304 ~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL 382 (1617)
+|. .|+-|+.|+.|.||+.|++..+-.+.+-|+.-...--++++.=.|.|-...||+.+|+++.-+-...-..-..+++
T Consensus 287 if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF 366 (1048)
T KOG2011|consen 287 IFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF 366 (1048)
T ss_pred HhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 344 6888999999999999999999888888864333457899999999999999999999998877653222222222
Q ss_pred -HHHHHh-----hccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000361 383 -KLVAER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1617)
Q Consensus 383 -~~laeR-----~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~ 442 (1617)
.-+.+| .||-.+.||..++..+..++...... ... -..|.+++|+.+.+
T Consensus 367 tsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 367 TSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 222222 58888999999998887776643211 111 23457777877655
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.83 E-value=9 Score=48.07 Aligned_cols=299 Identities=16% Similarity=0.204 Sum_probs=164.9
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCChh--HHHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhh-hhhccCC-
Q 000361 69 DKDVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSC-VVMLDLE- 143 (1617)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdaPy~d~--~Lkd-IF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~-vl~~DL~- 143 (1617)
+.+.-..+.-||..++.-..-+.++.+. ...+ |...+++.+-.....+.. ....+|+.++.+=.. +-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3444444555666666555544434432 2222 444444433222222222 445677777765333 3335544
Q ss_pred chHHHHHHHHHHHHh-----hcC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHhhcCCCcH----HHH
Q 000361 144 CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1617)
Q Consensus 144 ~~~Li~~lF~~ff~~-----v~~------~~~~~V~~~m~~IL~~vI~Ese~ip--~~lLd~IL~~l~~~~~~----~a~ 206 (1617)
.++++.++|..|+.. ... ..+.........|+..+=-+. .+| .++++-++......... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 578899999999811 000 123333333333333322221 233 23455444433332222 555
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhcchhhhhhhhhhcccccCCCh
Q 000361 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1617)
Q Consensus 207 ~lA~~vi~~~--~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~eL~sdd~ 276 (1617)
++..-++|++ .+.+...+..++..+ .............+ |+...+..+.+++...+-.| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 6777788874 444666666666554 11111111122222 22222222333344433332 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CC-------CCc-----hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000361 277 DTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1617)
Q Consensus 277 ~~Rl~At~llG~mfs~-~~-------~~~-----a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~---~~~ 340 (1617)
.+...|.+.+|-+++. ++ ++. =+-|-.+....+..+...+..+|...+.+...+|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7899999999999988 32 110 1234556667788888888889999999999999877752 345
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000361 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1617)
Q Consensus 341 ~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~ 379 (1617)
.+|+.-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888887788889999999998887766544444
No 43
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.83 E-value=0.39 Score=57.33 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000361 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 339 (1617)
Q Consensus 271 L~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~-----------~~ 339 (1617)
+++.+..+|..|++.|| +++.-+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 56655557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 340 APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 340 ~~eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
...+++.|..-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34678888888988899999999999988654
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.67 E-value=0.79 Score=52.07 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=66.0
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C---C
Q 000361 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---A 338 (1617)
Q Consensus 265 P~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~-w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~--~---~ 338 (1617)
|.|=..+.....-+|..|..+|-.|+..-+ -++.+ ......-.+++++.||..+++++..++...+. . .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 333333445667788888888888886422 12345 45555567888999999999998888887761 1 1
Q ss_pred C--hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 339 D--APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 339 ~--~~eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
. ...+++.+...+.|++..||.++-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 24688999999999999999999888877643
No 45
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=5.8 Score=51.25 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=127.0
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-----hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc----CC
Q 000361 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1617)
Q Consensus 265 P~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~-----~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s----~p 335 (1617)
|-|.--|++.|-.+|+.|..++-+.|--.+.+... --..-|....+=..|--|.||-..++.+-.+... -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 66777899999999999999999999876655422 2233355556677899999999999887775532 24
Q ss_pred CCCChHHHHHHHHh-hhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000361 336 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1617)
Q Consensus 336 ~~~~~~eii~~L~~-rL~D~DekVR~aaV~ai~~la~~~l~~V~~e-lL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~ 413 (1617)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+-=.+ +|..|..-+-|+.-+||..+...|.+|=.+-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 23455544433 4589999999999999988776554433223 567888889999999999999999998775321
Q ss_pred hccCCCcchhccccchHHHhhhhccCCCC--chhHHHHhhccCCCCCCCHH
Q 000361 414 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 462 (1617)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~--~~lvE~vL~e~LlP~~~~~~ 462 (1617)
.-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 22334444333232233433 12344555667788775444
No 46
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.45 Score=60.51 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcccc-cccHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCc
Q 000361 167 VLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSH 242 (1617)
Q Consensus 167 V~~~m~~IL~~vI~Ese-~ip~~lLd~IL~~l~~~~---~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~ 242 (1617)
+....+.|++.|+.... .-.+++|..+...|..+. ...|+.--..||+..++.+...+.. .+
T Consensus 106 Ir~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~----------rp---- 171 (885)
T KOG2023|consen 106 IRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT----------RP---- 171 (885)
T ss_pred HHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc----------Cc----
Confidence 33333444444444332 356888888888775432 2378877788898887666554320 00
Q ss_pred chHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000361 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1617)
Q Consensus 243 ~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1617)
|--.||-+=.-.++..+.+|..|+..+-..+-....++...-..-.....-+.+|.+++||..
T Consensus 172 -----------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~ 234 (885)
T KOG2023|consen 172 -----------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKN 234 (885)
T ss_pred -----------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 011223333334567899999999999988766543333222222223445779999999999
Q ss_pred HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000361 323 VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1617)
Q Consensus 323 ~v~~~~~iL~s~p~~--~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL 382 (1617)
+..+...+|..+|++ .-...|++++..|-.|.||.|-++||+-.-.+|... ++.++|
T Consensus 235 vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 235 VCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 999999988888763 123589999999999999999999999887766544 555555
No 47
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=20 Score=50.41 Aligned_cols=311 Identities=15% Similarity=0.210 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCh-hHHHHHHHHHHHhccCCCCCCCCChhhH-----HHHHHHHHhhhhhhhhccCCchHHH
Q 000361 75 LVATCICEITRITAPEAPYSD-DVLKDIFQLIVGTFSGLKDTGGPSFGRR-----VVILETLAKYRSCVVMLDLECDELV 148 (1617)
Q Consensus 75 ~vAcCLadIlRI~APdaPy~d-~~LkdIF~l~v~~f~~L~d~~~p~f~~~-----~~lLe~la~vks~vl~~DL~~~~Li 148 (1617)
-.+.|=.|-.++ -|+.|+-. ..=.+.+.+|...|..+-...+|.+.|. ..+...++.-+..++++- ++.
T Consensus 789 ~~~~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~----eI~ 863 (1702)
T KOG0915|consen 789 NYTALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK----EIQ 863 (1702)
T ss_pred hhhhcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH----HHH
Confidence 344455566666 33333321 1233456666666665656677877765 233445555556665543 333
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc-cccHHHHHHHHHhhcC--------------------CCcHH--H
Q 000361 149 NEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGR--------------------NKNDT--A 205 (1617)
Q Consensus 149 ~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese-~ip~~lLd~IL~~l~~--------------------~~~~~--a 205 (1617)
+-|..|+. -++++...|.+ .=|.-|-+=++ ..-.++++-++..|.. +++.. .
T Consensus 864 -~aF~~~Ls-d~dEf~QDvAs---rGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~ 938 (1702)
T KOG0915|consen 864 -EAFSHLLS-DNDEFSQDVAS---RGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGK 938 (1702)
T ss_pred -HHHHHHhc-ccHHHHHHHHh---cCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCc
Confidence 66666654 22222222221 11111111111 2333444444444311 11111 1
Q ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHHhhcCC-CCCCC---------------Ccch--HHHHHHHHHhhcchhhhhhhhh
Q 000361 206 RRLAMNVIEQCAGKLEAGIK-QFLVSSMSGD-SRPGH---------------SHID--YHEVIYDVYRCSPQILSGVVPY 266 (1617)
Q Consensus 206 ~~lA~~vi~~~~dkL~~~i~-q~f~~~l~~~-~~~~~---------------~~~~--~h~Li~eL~~~~P~lL~~ViP~ 266 (1617)
-.-=+++|+-.+|-=||.+- +|+ +.-... .-.++ ..+. +-.||-.|||+-
T Consensus 939 isTYKELc~LASdl~qPdLVYKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~---------- 1007 (1702)
T KOG0915|consen 939 ISTYKELCNLASDLGQPDLVYKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ---------- 1007 (1702)
T ss_pred chHHHHHHHHHhhcCChHHHHHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc----------
Confidence 22236888888888888764 444 222110 00000 1111 234555555442
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHH
Q 000361 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQI 343 (1617)
Q Consensus 267 Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~---~~~~ei 343 (1617)
=..+..++-.-|-.-+-++.++.....+-+-+++.+.|.-..++.=.||.+.+-+..++|..+|.. +...++
T Consensus 1008 -----yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1008 -----YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPEL 1082 (1702)
T ss_pred -----cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 235677777777777877777654445566899999999999999999999999999999988742 334578
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVK-----LVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 344 i~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~------V-~~elL~-----~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
+.++-+-.=|-.|.||.|+=++...++.-.... . ..+++. .+.+-+--|-..||+.+|..|.+|-+.+
T Consensus 1083 w~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 888888888999999998766655554322111 1 113333 2334444566799999999999999876
No 48
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.51 E-value=0.89 Score=57.96 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=79.4
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcC---CCC-----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000361 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTD---PSR-----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1617)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~iL~s~---p~~-----~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V 377 (1617)
..|..=..--+-..|..+++.|++++..- |.. ....+++.-|.+||.|+-.-+|..|++++..+--.....+
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 34444445567788999999999987632 111 1235788999999999999999988888755433222222
Q ss_pred --CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 378 --PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 378 --~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
-.++.+.++.|+-||..-||+.|+..+++|.-.+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999999987765
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.38 E-value=7.7 Score=50.45 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=118.9
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccC
Q 000361 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1617)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL 142 (1617)
..|.....-||..+|.||+-+.-. -.||.-+++..||+.+-.-.+.=. + +-....|..+.. . |-
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---l--ip-- 623 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---L--IP-- 623 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---c--cc--
Confidence 344555566999999999988765 468999999999998866443211 1 111222322221 1 11
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHhhh
Q 000361 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAG 218 (1617)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~----~~~a~~lA~~vi~~~~d 218 (1617)
|+..-+..+|. ..+|.-+|-|..+-..+.-.++|.-+.+.- .+++|.-- +
T Consensus 624 ----lmd~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~--------d 677 (1172)
T KOG0213|consen 624 ----LMDAEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRF--------D 677 (1172)
T ss_pred ----cccHHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhh--------h
Confidence 11112222222 345666667765555555556665553321 11444211 2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000361 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1617)
Q Consensus 219 kL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~ 296 (1617)
.+...+..|.+--+.+|.. .-...-+.-.+|..- |-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr---~ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRR---NYKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhcccc---chhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 2223333333222222211 001122222222211 2233333 335678899999999999999999876532
Q ss_pred -----------------c------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000361 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1617)
Q Consensus 297 -----------------~------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1617)
| ++.| |.+-..-|.|.+.+++.||....+.+..+
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1 1222 66677778899999999999877766653
No 50
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.31 E-value=0.075 Score=54.46 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=35.4
Q ss_pred CCcccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000361 1315 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1360 (1617)
Q Consensus 1315 ~~~~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdDgd~E~l 1360 (1617)
|.++||.||---|-+++-||.|+|+. +....+.+|..|||.+..+
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcccee
Confidence 35789999999999777779999999 5777899999999998654
No 51
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=7.2 Score=51.18 Aligned_cols=139 Identities=16% Similarity=0.212 Sum_probs=94.4
Q ss_pred hhhhhhcccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000361 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1617)
Q Consensus 262 ~ViP~Le~eL~sdd~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~ 340 (1617)
+.+|.+-.+|.+.-...|..|++ +++.|--+ -++.. +|...++-..=.+.+.-.-+=.++...-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G--~DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVG--KDVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccC--cchHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555666665555566666664 56666554 24555 4445555444445666666666666666667753 3
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 341 ~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
...+..+.+-.-|+++.+|.-|+... .+-....+.+-+..-+..-++|+.+-||+.|..+++++|...
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm---~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTM---GCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhce---eeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 45668888889999999999865554 333344445556677788899999999999999999999864
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.22 E-value=6.8 Score=52.07 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=100.0
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000361 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1617)
Q Consensus 271 L~sdd~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~ 349 (1617)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 67778888888876 567777654 5778888888888854 788888777666666667773 34455689999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 350 rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
=|.|+++.+|..|+..++.+-.. .+-+-++..+..-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999987777554333 33345678889999999999999999999999973
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.00 E-value=0.076 Score=52.97 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=57.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000361 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1617)
Q Consensus 263 ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~-~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~-- 339 (1617)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.-++|.++.||..++.+..++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777777888999999999999988762100000 0113444444445555555555555555554443321000
Q ss_pred -hHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000361 340 -APQILTALCDRLLDFDENVRKQVVAVICD 368 (1617)
Q Consensus 340 -~~eii~~L~~rL~D~DekVR~aaV~ai~~ 368 (1617)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01234445555555555555555555443
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.68 E-value=0.17 Score=50.61 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 341 ~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V---~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
.+|++.+..++.|+|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 5788888889999999999999999988886443333 23577888899999999999877 555544
No 55
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.59 E-value=0.66 Score=51.23 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=72.1
Q ss_pred HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000361 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1617)
Q Consensus 247 ~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~ 326 (1617)
..+-.|..-.|.++-+.+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455667778999999999999999999999999999999999875 5777778888899999999999999988888
Q ss_pred hHHHHhc-CC
Q 000361 327 VKSCLLT-DP 335 (1617)
Q Consensus 327 ~~~iL~s-~p 335 (1617)
...++.. +|
T Consensus 87 ~~e~~~~~~~ 96 (178)
T PF12717_consen 87 FSELLKKRNP 96 (178)
T ss_pred HHHHHHhccc
Confidence 8887776 44
No 56
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.53 E-value=8.6 Score=51.18 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.5
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000361 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1617)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~e-lL 382 (1617)
.-+.|++=+.|.++.||...+.....+ +..+....++..+.+++.|+..-||..|+-+|..+-.-..+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 356788899999999999999887642 1223456778999999999999999999999988776677777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 383 ~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 57
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.51 E-value=7.4 Score=49.32 Aligned_cols=295 Identities=15% Similarity=0.189 Sum_probs=168.6
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhh------hhccCCchHHHHHH
Q 000361 79 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCV------VMLDLECDELVNEM 151 (1617)
Q Consensus 79 CLadIlRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~l-Le~la~vks~v------l~~DL~~~~Li~~l 151 (1617)
.|+.|+|+.+----|...+...+|--|..-|.+ .++|..|++|+ ++-|+.+--=| +|-|+.
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~-------- 111 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLN-------- 111 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhc--------
Confidence 367889998888888888889888888777753 67889999886 45555432222 233332
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHh-hcC---CCcH----HHHHHH---HHHHHHhhhhh
Q 000361 152 YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRLA---MNVIEQCAGKL 220 (1617)
Q Consensus 152 F~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~-l~~---~~~~----~a~~lA---~~vi~~~~dkL 220 (1617)
++-+..+......-|..||++.-. +. ..-+|.+ |.. .... .||.|- .+.+.+-...-
T Consensus 112 ---------~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~ 179 (898)
T COG5240 112 ---------GGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNET 179 (898)
T ss_pred ---------cCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHH
Confidence 223333334444444455544221 11 1112211 110 0111 223221 11111111111
Q ss_pred HHHHHHHHHHhh-----cCC-CC-CCCCcc-hHH--HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000361 221 EAGIKQFLVSSM-----SGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1617)
Q Consensus 221 ~~~i~q~f~~~l-----~~~-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mf 290 (1617)
|.+ ..++- .|. +. |....+ ++| .|+|++-+..--.++..+..+-..+...|-.--.+-++.+..++
T Consensus 180 qea----v~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll 255 (898)
T COG5240 180 QEA----VLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELL 255 (898)
T ss_pred HHH----HhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHH
Confidence 111 11211 111 11 112222 455 67999999887777777777776665555444455566666666
Q ss_pred cCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000361 291 AVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1617)
Q Consensus 291 s~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la 370 (1617)
-. .+++..+..+..+.||+- +-..|-++....+-.+-..|-......+.+..|+-.|.-+.---|.+|...+.++|
T Consensus 256 ~~-n~q~~~q~rpfL~~wls~---k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 256 KE-NSQALLQLRPFLNSWLSD---KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred Hh-ChHHHHHHHHHHHHHhcC---cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 55 357778888888889875 33445555444443332333222344577889999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000361 371 CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1617)
Q Consensus 371 ~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~ 406 (1617)
...++.|..-- ..+-..+-|-+..|-.+||+.|-+
T Consensus 332 m~~P~kv~vcN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 332 MKYPQKVSVCN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred hhCCceeeecC-hhHHHHhhcccccchHHHHHHHHH
Confidence 98888765421 123445677777788888877754
No 58
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=1.2 Score=60.06 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=106.6
Q ss_pred hHHHHHHHHHh---hcc--hhhhhhhhhhcccc----cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcC
Q 000361 244 DYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1617)
Q Consensus 244 ~~h~Li~eL~~---~~P--~lL~~ViP~Le~eL----~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D 314 (1617)
+.|++|..+.. ..+ .+|....|.+..-- ...++.++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 46666665542 233 56666777776544 345699999999999999865 3456554444444344432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000361 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1617)
Q Consensus 315 ~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~ 394 (1617)
.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++.-+.....--|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 57889999999999988877754 3467799999999999999999999998776655433332 24566777888887
Q ss_pred hHHHHH
Q 000361 395 LVKRYT 400 (1617)
Q Consensus 395 ~VR~eA 400 (1617)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 766544
No 59
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.33 E-value=58 Score=48.33 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=92.7
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCch-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000361 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1617)
Q Consensus 265 P~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a-----~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~ 339 (1617)
+.|-.-|...+.+++..|+..|..+-.... +.. .---+..-.||+. -+..+|...+.....+-..+.....
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334445667778999999999988776532 110 1112344455554 4678888777776654433321000
Q ss_pred ---hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000361 340 ---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1617)
Q Consensus 340 ---~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~---~V-~~elL~~laeR~rDKK~~VR~eAm~~La~LY~ 409 (1617)
....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+-+++....+|+.|...|++|-.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 013467888889999999999999999998873211 12 22345567777888889999999999998854
No 60
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=5.8 Score=52.01 Aligned_cols=258 Identities=19% Similarity=0.181 Sum_probs=144.4
Q ss_pred hhhcCCCcchHHHHHHHHHHH----HhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh-hhh
Q 000361 63 VLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR-SCV 137 (1617)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadI----lRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vk-s~v 137 (1617)
..|.||..-|-.=+|--++.+ -|+.+| . --+.++|++. |....--.++-+|-.+|-.. .-|
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p----a----vs~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP----A----VSVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch----H----HHHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCccc
Confidence 456777777766666555543 244455 1 2234444432 22222222344555555322 233
Q ss_pred hhccCCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHHHh---cccccccHHHHHHHHHhhcCCCcHHHH
Q 000361 138 VMLDLECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIVLL---EESEDIQEDLLVILLSALGRNKNDTAR 206 (1617)
Q Consensus 138 l~~DL~~~~Li~~l--------F~~ff~~v~~~~~~~V~~~m~~IL~~vI---~Ese~ip~~lLd~IL~~l~~~~~~~a~ 206 (1617)
.+|.++-+.||... ..+++.. +...+|...|-.|-+.+= +|.--|--+-+..+...+.
T Consensus 318 ~~cN~elE~lItd~NrsIat~AITtLLKT---G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp-------- 386 (865)
T KOG1078|consen 318 TVCNLDLESLITDSNRSIATLAITTLLKT---GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP-------- 386 (865)
T ss_pred cccchhHHhhhcccccchhHHHHHHHHHh---cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc--------
Confidence 44555544444432 2233332 335566666665544443 3333333333333333332
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHH
Q 000361 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1617)
Q Consensus 207 ~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~ll 286 (1617)
+....+-.|+.++|.++++ .+-.....+.|..+-+..|+.=-.-+-.|..-. +|=+.+..||+.|
T Consensus 387 ------------~k~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rIL 451 (865)
T KOG1078|consen 387 ------------RKHTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRIL 451 (865)
T ss_pred ------------HHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHH
Confidence 3344556677777766422 111223567777777878875444333333322 4566788899999
Q ss_pred HHhhcCCCCCchhhcHHHHHHH-HhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000361 287 GDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1617)
Q Consensus 287 G~mfs~~~~~~a~~y~~~w~~f-L~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~a 365 (1617)
+.+--. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|.++++|.|+.||-.|--.
T Consensus 452 hlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 452 HLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred HHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 866543 2 123345555544 46777778999999999999999666543 34688999999999999999885433
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.79 E-value=0.24 Score=38.95 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 343 ii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
|+..|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778888889999999999999888764
No 62
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.45 E-value=11 Score=45.15 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCCCchhhcH--HHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHH
Q 000361 284 GLVGDLFAVPGSANNEQFH--SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 360 (1617)
Q Consensus 284 ~llG~mfs~~~~~~a~~y~--~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~ 360 (1617)
..++.|+......+..... +++..++-. ..-.++.||..-+++.+-+-+-+. ..+.+-+.-+...+..-++.||.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445555443322322222 667776622 233467999999999987555443 33455555555555444999999
Q ss_pred HHHHHHHHhhhhh-cCCC---C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 361 QVVAVICDVACHA-LNSI---P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 361 aaV~ai~~la~~~-l~~V---~--------~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.|+++++|+.... +..+ + ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999998632 2222 2 24667777777777889999999999998875
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=14 Score=48.85 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHhhcCCC------------------CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC
Q 000361 275 QLDTRLKAVGLVGDLFAVPG------------------SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1617)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~------------------~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~ 336 (1617)
+..+|.+|+..||+-+..+. .+.+++|+.+--+ ...|.++.||...+|..-.++..+-
T Consensus 307 ~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N- 382 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN- 382 (866)
T ss_pred CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc-
Confidence 45566666666666666553 2457888877654 5679999999999999877665432
Q ss_pred CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 337 RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 337 ~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
...+++.|.+-|.-.|+.+|...+..|+.+|-
T Consensus 383 ---v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 383 ---VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45677777777777899999998888887664
No 64
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.92 E-value=59 Score=41.82 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhc
Q 000361 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1617)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k 674 (1617)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345789999999999999999988888888998887666667777767663
No 65
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.68 E-value=3 Score=54.68 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=77.1
Q ss_pred cchhhhhhhhhhccccc----CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc---CCChhHHHHHHHHhH
Q 000361 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1617)
Q Consensus 256 ~P~lL~~ViP~Le~eL~----sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~---D~s~~VR~~~v~~~~ 328 (1617)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45555666777776666 45779999999999987 22 233444444333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000361 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 404 (1617)
Q Consensus 329 ~iL~s~p~~~~~~eii~~L~~rL~D~De--kVR~aaV~ai~~la~~~l~~V~~elL~~laeR~-rDKK~~VR~eAm~~L 404 (1617)
.+....| ..+.+.|..-+.|..+ .||.+|+-++-. ..-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644333 2455666666666544 499997666522 113556788888887 677788887665543
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.50 E-value=0.16 Score=44.86 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000361 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1617)
Q Consensus 317 ~~VR~~~v~~~~~iL~s~p~--~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~ 368 (1617)
+.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777663332221 11234777888888888888888888777754
No 67
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.12 E-value=18 Score=46.87 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCCchhhcHHHHHHH----HhhhcCCCh
Q 000361 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEF----LKRLTDRIV 317 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~--~~~~a~~y~~~w~~f----L~R~~D~s~ 317 (1617)
+.-..+..|-...|.+.+--+-++..-|.++.-..|-..++..|.+.... ...++..||...+.. -.|+.|..|
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 45567788889999999999999999999999999999999999887542 236778888777655 469999999
Q ss_pred hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCHHHH
Q 000361 318 AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVETV 382 (1617)
Q Consensus 318 ~VR~~~v~~~~~iL~s~p~-~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~V~~elL 382 (1617)
-+|...++-+..|.--+.- .....+++..+..||.|----||..||+....+-... |...-...|
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~l 427 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQL 427 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccchh
Confidence 9999999998776543311 1223589999999999999999999999998876633 444444433
No 68
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.04 E-value=12 Score=48.32 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=87.5
Q ss_pred Hhhcchhhhhhhhhhc----ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000361 253 YRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1617)
Q Consensus 253 ~~~~P~lL~~ViP~Le----~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~ 328 (1617)
-.+.|.++...+|.++ ....+++...|..|=++||.+..... .+...--++..-+.....+-.++||..+-++..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 3667777888888884 34667899999999999999887644 334344555566667778889999999999988
Q ss_pred HHHhcCCCCCC-----hHHHH-HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000361 329 SCLLTDPSRAD-----APQIL-TALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1617)
Q Consensus 329 ~iL~s~p~~~~-----~~eii-~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~ 384 (1617)
.++.+-+.... ..... ..+.....+..-.+|.+||+-.. +|..+++++...+..
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhCCccchHHHHHHh
Confidence 87764432111 11112 22333345667779999888763 467777877765543
No 69
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.03 E-value=2.2 Score=42.39 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000361 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1617)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p-~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~e 380 (1617)
..+|+.++.-.+|..++||..-+....+.+.++. .......|+..+..-|.|+|.=|=++||++++.++...+ .+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----DE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----HH
Confidence 3678999999999999999999999999888765 334456788899999999999999999999999887653 34
Q ss_pred HHHHHHHhhccC
Q 000361 381 TVKLVAERLRDK 392 (1617)
Q Consensus 381 lL~~laeR~rDK 392 (1617)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 555555554444
No 70
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=89.87 E-value=0.44 Score=56.07 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=40.1
Q ss_pred CcccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEcc-CCcceeeeccc
Q 000361 1316 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1364 (1617)
Q Consensus 1316 ~~~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~Yd-Dgd~E~l~l~~ 1364 (1617)
..=||-+|.-.|-.|..||.++|++.+...+.-.|+|. -|..|.+.|..
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 45599999999999999999999999999999999994 57888888864
No 71
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.47 Score=60.33 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000361 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1617)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~l 385 (1617)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-+..|.+.++|-.+-||+.++.++.-++.+ -.|..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888976 447889999999999999999999999888877 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000361 386 AERLRDKSVLVKRYTMERLAD 406 (1617)
Q Consensus 386 aeR~rDKK~~VR~eAm~~La~ 406 (1617)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999988777654
No 72
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.76 E-value=12 Score=49.85 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=98.8
Q ss_pred cccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhh-hcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000361 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 722 (1617)
Q Consensus 644 k~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~-~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~ 722 (1617)
++.+.-|+++|..++....-.++..|.+.+-+ .++- .-....+.+.|.++-..++...-.-|.++|..++-+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567889998877665555566677666532 2221 112446788899998888888888999999988876543210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCCC-----Cchh
Q 000361 723 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACWD-----DRSE 792 (1617)
Q Consensus 723 ---~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~a--p~vfe~~~~eI~~fiik~IL~~~~~~~~~~~~~W~-----d~se 792 (1617)
.-++..|+..|.........|..|..|+... ...|.. ++.+.+|++-++..+.... ..+.-|. -...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 1133455555553322233455666666542 345532 2356777776665433211 1111110 0111
Q ss_pred --hHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000361 793 --LCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1617)
Q Consensus 793 --~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 831 (1617)
...+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 111133457777777655432 45788988874
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=86 Score=41.79 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=95.7
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
|.-+.-.-..-|++=...++.+-..-..++..+|.+|++++|.+= . ...-.-++...++-.+|..+.||...+-
T Consensus 70 yLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 70 YLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DKITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hHHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 333333446678888888899999999999999999999988442 2 2222346778888899999999999988
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~ 375 (1617)
++..+-.-++..-...-++..|.+-+.|.+.-|=..|+.++..+...+.+
T Consensus 144 ~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 144 CVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 88876666665444457888899999999999999999999888876654
No 74
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.62 E-value=0.58 Score=46.59 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHH
Q 000361 308 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVE 380 (1617)
Q Consensus 308 fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~---~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~V~~e 380 (1617)
++.-..|.++.+|...+.+...+-...|.. -....+++.|...|.|.+.+||..++.+++.++..... .+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333444556788888888877755543321 00125677888889999999999999999999764321 12233
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 381 TVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 381 lL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
++..+.+.+.+....||+.|+..|+.|
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677888999999999999999999876
No 75
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=33 Score=48.41 Aligned_cols=352 Identities=15% Similarity=0.229 Sum_probs=166.2
Q ss_pred HHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch--------------hhh-cCCCcchHHHHHHHH--HHHHhhcCCCC
Q 000361 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQP--------------VLL-KHQDKDVKLLVATCI--CEITRITAPEA 91 (1617)
Q Consensus 29 rL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~--------------~LL-~HkD~~Vr~~vAcCL--adIlRI~APda 91 (1617)
-|++|-=-|....=||..-..+++..+-+.|+.. .|| +=.++.-|+--|||| +|++|= .
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g----~ 1070 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG----R 1070 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC----C
Confidence 3444444445554455444556666555555544 233 347888899999996 599985 5
Q ss_pred CCCh--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCC----chHHHHHH--------------
Q 000361 92 PYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE----CDELVNEM-------------- 151 (1617)
Q Consensus 92 Py~d--~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~----~~~Li~~l-------------- 151 (1617)
|+++ +.|.+|+..+|+.-..+.+. --.-..-....|+ |.||-+||.. +.+.+.-+
T Consensus 1071 ~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~ls--Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1071 PFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARALS--KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 6665 56777777666654433321 1111122233333 3466677753 12222111
Q ss_pred ------HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhh----------------------------
Q 000361 152 ------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL---------------------------- 197 (1617)
Q Consensus 152 ------F~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l---------------------------- 197 (1617)
..++.+++. .-++.+..+..+..-.+++-.+.+.+.||..+--.+
T Consensus 1146 evr~~si~tl~dl~K-ssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~c 1224 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAK-SSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKC 1224 (1702)
T ss_pred HHHHHHHHHHHHHHH-hchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHH
Confidence 112222221 112334444444444555555555555555443221
Q ss_pred ------------------------cCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcc-hHH-HHHHH
Q 000361 198 ------------------------GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHI-DYH-EVIYD 251 (1617)
Q Consensus 198 ------------------------~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~-~~h-~Li~e 251 (1617)
+-+.+..+..+-..+..+|..-|.||.-.+|.-++.|-.. .++.. +++ .-.--
T Consensus 1225 i~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~ 1303 (1702)
T KOG0915|consen 1225 INYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGY 1303 (1702)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHH
Confidence 0001113334444444445555555555555544443211 11111 111 11111
Q ss_pred HHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH--HHHhhhcCCChhHHHHHHHHhH
Q 000361 252 VYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKRLTDRIVAVRMSVLEHVK 328 (1617)
Q Consensus 252 L~~~-~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~--~fL~R~~D~s~~VR~~~v~~~~ 328 (1617)
|.++ .|+=-...+-.+-.++..+++..+..+..++.+ |+....+....|.+.+- .||.++.+ .-+.=-.|-+.--
T Consensus 1304 L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~ 1381 (1702)
T KOG0915|consen 1304 LAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDVWA 1381 (1702)
T ss_pred HHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence 2222 443333333344444555566666777777776 55443344444444443 55665555 1111111111111
Q ss_pred HHHhcCCCC--CChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHH--------HHHHHHhhccCC
Q 000361 329 SCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVET--------VKLVAERLRDKS 393 (1617)
Q Consensus 329 ~iL~s~p~~--~~~~eii~~L~~rL-~D~DekVR~aaV~ai~~la~~~l~~V~~el--------L~~laeR~rDKK 393 (1617)
.+....-.+ -...+|+..+|+-. .+.-.++|.++.+++..++......+|.+. +.++..|+=|=|
T Consensus 1382 e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1382 ELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred HhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccH
Confidence 111000000 01235666666654 455599999999999988887777777543 345666665443
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=2.6 Score=54.00 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000361 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1617)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~ 375 (1617)
.+...-..+|+....=++|.++.||...++..-. +.+ ..-....+.+-..+-+-|.++-||.+||+.|.-++...+-
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~--L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA--LSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh--hcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556788887777899999999999888543 222 1122334567778889999999999999999777765532
Q ss_pred CC---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 376 SI---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 376 ~V---------~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.. -...+..+.+=++|..+.||.+|.+.||.+=+.
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 21 124678999999999999999999999987665
No 77
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.51 E-value=4 Score=50.76 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred HHHh-hcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000361 251 DVYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1617)
Q Consensus 251 eL~~-~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 329 (1617)
.+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.
T Consensus 321 svWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 321 SVWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred hHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3564 444555555543322 478999999999999999987766666556677899999999999998888999988
Q ss_pred HHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 330 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 330 iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la----~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
+|.+|.-. .-+.-++.+++-.|+..=.++++....+. ...|..+=.++.=.+.+=.---...||+.|+=+|-
T Consensus 398 ~las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 88877421 34556677777799998888887764432 22233332233334444444556689999999999
Q ss_pred HHHHHhhhhccCCCcchhccccchHHHhhh
Q 000361 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1617)
Q Consensus 406 ~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~ 435 (1617)
.+|+..-- ..-...+...++.-+++
T Consensus 474 amv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 474 AMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99997521 11123455556655544
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.42 E-value=1 Score=45.20 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChh
Q 000361 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 279 Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~--~~~~eii~~L~~rL~D~De 356 (1617)
|..+.-.|+.+--+-+..+....+.+-..-|.-|.|.++.||....++..+|....... .-..+|..+|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444455544322233456666788888899999999999999999999987654321 1135899999999999999
Q ss_pred HHHHHH
Q 000361 357 NVRKQV 362 (1617)
Q Consensus 357 kVR~aa 362 (1617)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.15 E-value=0.44 Score=42.03 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 356 ekVR~aaV~ai~~la~~~l~---~V~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
+.||.+|+.+++.++..... ..-.+++..|...++|-...||..|...|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999886643332 23446788999999999999999999999875
No 80
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.80 E-value=0.67 Score=39.37 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.5
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000361 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1617)
Q Consensus 327 ~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~a 365 (1617)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 445566666655566888888889999999999888765
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=87.25 E-value=3.9 Score=51.21 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000361 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1617)
Q Consensus 346 ~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~ 406 (1617)
.|..-|.|.|..||.++|.+++.+-.. +.+..|..-+.|....||..|+.+|+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444466666666666665553321 111112233556666666666666543
No 82
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.20 E-value=18 Score=46.58 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=123.6
Q ss_pred hhhhHHHHHHHHHHhhcC--CCCCCCCcchHHHHHHHHHhh-----cchhhhhhhhhhcccccCCChHHHHHHHHHHHHh
Q 000361 217 AGKLEAGIKQFLVSSMSG--DSRPGHSHIDYHEVIYDVYRC-----SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 289 (1617)
Q Consensus 217 ~dkL~~~i~q~f~~~l~~--~~~~~~~~~~~h~Li~eL~~~-----~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~m 289 (1617)
..-.+|||..+|..++.. |.... ....+.+-+..|-++ ++.+|.+.|+.+... .=..-..|++++|-|
T Consensus 207 g~~~EPyiv~~lp~il~~~~d~~~~-Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrtK~aslellg~m 281 (569)
T KOG1242|consen 207 GPPFEPYIVPILPSILTNFGDKINK-VREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAM 281 (569)
T ss_pred CCCCCchHHhhHHHHHHHhhccchh-hhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHH
Confidence 355789999999988753 21111 111233444444444 455666666666553 455667899999977
Q ss_pred hcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh--cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000361 290 FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--TDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 367 (1617)
Q Consensus 290 fs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~--s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~ 367 (1617)
--.....+....|++--..-....|..|+||-+-.++...+-. .|| ++.-+++.|.+++-||..+|... ++.++
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp~~~~~e~-~~~L~ 357 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP---DIQKIIPTLLDALADPSCYTPEC-LDSLG 357 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCcccchHHH-HHhhc
Confidence 7665556788889999999999999999999987777655332 233 46778899999999999888765 44443
Q ss_pred Hhhh-hhcCCCCHHHH-HHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 368 DVAC-HALNSIPVETV-KLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 368 ~la~-~~l~~V~~elL-~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
...+ +.....+-.+| -.|..-+.++....++.|..-.+++++..
T Consensus 358 ~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 3222 22222233333 34555567777888888888888887763
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.00 E-value=7.3 Score=52.50 Aligned_cols=150 Identities=16% Similarity=0.274 Sum_probs=103.9
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCch---------------------------------------
Q 000361 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN--------------------------------------- 298 (1617)
Q Consensus 258 ~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a--------------------------------------- 298 (1617)
+++..+-|.|+.++.+.+=..|..|++-|...+..++....
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 67888999999999999999999999999999987651111
Q ss_pred --hhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhc
Q 000361 299 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1617)
Q Consensus 299 --~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~-~~l 374 (1617)
..| ..++..+|.|+.|+-+.+|-..+.++-.++.+.+ ...+.+++..-+.+-...+|...-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4456677788888888888888888877776544 23566666677777777777764333322111 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 375 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 375 ~~V~~----elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
..++. .+...++-.+.|+...||..|.+.++.+++.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 22322 34456777888888888888888888888865
No 84
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.89 E-value=9.4 Score=52.14 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHH
Q 000361 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1617)
Q Consensus 204 ~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At 283 (1617)
..+..-+...+...|.+...|..+|.++... +++ .-.+.+|...+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYR--------------------------DV~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYR--------------------------DVDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------ecc--------------------------cCchHHHHHHH
Confidence 5556666777777788888888888776543 222 23567899999
Q ss_pred HHHHHhhcCCCCCchhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh-----hC
Q 000361 284 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 352 (1617)
Q Consensus 284 ~llG~mfs~~~~~~a~~y~~~w~--~fL~R----~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~r-----L~ 352 (1617)
+-||-- +..||+.|- .||+= .+|+...||..||+.+..+..+.-...-......-+.+| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999954 466777765 45543 589999999999999999877632211223445555555 36
Q ss_pred CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHhh
Q 000361 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 412 (1617)
Q Consensus 353 D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~-LY~~~~ 412 (1617)
|.+.-||....... +.......++.+-+..|...|=|-++.||+.|+..|-. ++..++
T Consensus 381 d~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 77777776644332 34455677888888899999999999999999988755 444443
No 85
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.53 E-value=1.1e+02 Score=39.99 Aligned_cols=142 Identities=17% Similarity=0.107 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhh-------hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhhhcccccCCCh
Q 000361 205 ARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQL 276 (1617)
Q Consensus 205 a~~lA~~vi~~~~-------dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~eL~sdd~ 276 (1617)
.+.|+...|.... +.+.+++.+.+.+.....+ . .+..-.|..|-.. .|..+....|+++.. ..-..
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~---~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~~ 494 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD--E---EEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLST 494 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC--c---hheeeHHHhhhccCChhHHHHHHHhcCCC-CCCCH
Confidence 3455665664432 4455666666655443211 1 1122233333322 577777777777632 22356
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000361 277 DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 277 ~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~De 356 (1617)
.+|..|+..|.++-... -....+-+|.-|+.+- ..++||++.+-.+ +.++|+... +-......-.|++.
T Consensus 495 ~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~~---l~~ia~~l~~E~~~ 563 (574)
T smart00638 495 FIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVAL---LQRIAELLNKEPNL 563 (574)
T ss_pred HHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHHH---HHHHHHHHhhcCcH
Confidence 79999999999775321 1245556777776665 4578999877664 456786432 22233333468888
Q ss_pred HHHHHHH
Q 000361 357 NVRKQVV 363 (1617)
Q Consensus 357 kVR~aaV 363 (1617)
.|+-.+.
T Consensus 564 QV~sfv~ 570 (574)
T smart00638 564 QVASFVY 570 (574)
T ss_pred HHHHHhH
Confidence 8887643
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.01 E-value=29 Score=45.71 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=138.2
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHH-------------HHH
Q 000361 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV-------------VIL 127 (1617)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~---APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~-------------~lL 127 (1617)
=|+|...=||-.+-|||-.|++.+ -|||| .-|..++.+.. ||+ +-...| |++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 368999999999999999999995 48888 44555555432 221 122223 333
Q ss_pred HHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHH
Q 000361 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1617)
Q Consensus 128 e~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~~~a~~ 207 (1617)
+.+..|.++ ++.+.-.|-.|..-++-..|..--.++.-|+..+-.++..| .|.
T Consensus 210 ~~idqi~~~--------~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV-------------------~fE 262 (948)
T KOG1058|consen 210 SNIDQIPSF--------NDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAV-------------------IFE 262 (948)
T ss_pred hhHhhccCc--------cHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchh-------------------hhh
Confidence 333333222 22222222222222333334433333444443333332222 122
Q ss_pred HHHHHHH--HhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh----cchhhhhhhhhhcccccCCChHHHHH
Q 000361 208 LAMNVIE--QCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC----SPQILSGVVPYLTGELLTDQLDTRLK 281 (1617)
Q Consensus 208 lA~~vi~--~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~----~P~lL~~ViP~Le~eL~sdd~~~Rl~ 281 (1617)
-|..|+. .....|.++...|+.=+.... .-+..+-.-+.|++|... --+++..|++. |.+.|.++|.+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kes--dnnvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr~K 336 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKES--DNNVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVRSK 336 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhcc--CcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHHHH
Confidence 2222111 112334444444443222111 001111123344444433 33445555555 67799999999
Q ss_pred HHHHHHHhhcCCCCCchhhcHHHHHHHHhh-------hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC
Q 000361 282 AVGLVGDLFAVPGSANNEQFHSVFSEFLKR-------LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1617)
Q Consensus 282 At~llG~mfs~~~~~~a~~y~~~w~~fL~R-------~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~ 354 (1617)
+..+.-++.+..... ++-+-+-++ -+|..-.-|...++....|-.+-|+. +..++..|.+-+-|+
T Consensus 337 tldi~ldLvssrNve------div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 337 TLDIALDLVSSRNVE------DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDFISDS 408 (948)
T ss_pred HHHHHHhhhhhccHH------HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHHhccC
Confidence 999999999876421 111111112 24556677999999999999888864 578999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 000361 355 DENVRKQVVAVICD 368 (1617)
Q Consensus 355 DekVR~aaV~ai~~ 368 (1617)
.+.-=..++.-|.+
T Consensus 409 N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 409 NEAAASDVLMFVRE 422 (948)
T ss_pred CHHHHHHHHHHHHH
Confidence 99987777766655
No 87
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.57 E-value=1.6e+02 Score=39.33 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=82.1
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc
Q 000361 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 333 (1617)
Q Consensus 254 ~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s 333 (1617)
...-+++.-.+-++.-.|.+.++-.=-.|...|. .|..|+ +++ ++...-+.=.+-.-|-||...|-..-.+...
T Consensus 101 ~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~fvTpd--LAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLk 174 (877)
T KOG1059|consen 101 HDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CIVTPD--LAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLK 174 (877)
T ss_pred cCCccHHHHHHHHHHHHhccCccchhhheecccc-cccCch--hhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 3334444445556677777777766667777776 344443 554 3444444445567899999999988888887
Q ss_pred CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000361 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1617)
Q Consensus 334 ~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~ 375 (1617)
-|+. .+.-.+-|.++|-|+|..|--|||.+||++|..++.
T Consensus 175 YPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 175 YPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 7752 356788999999999999999999999999998865
No 88
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.50 E-value=30 Score=45.26 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=91.0
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-------CchhhcHHHHHHHHhhh-cCCChhHHHHHHH
Q 000361 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1617)
Q Consensus 254 ~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~-------~~a~~y~~~w~~fL~R~-~D~s~~VR~~~v~ 325 (1617)
.-.|++|-.+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-..+...|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446777777777777766667888999999999988742111 11233434444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~---D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~ 402 (1617)
++++ +.+| .++..|...+. .....||.+||.++..++...+..+-.-++..+-. ++..+.||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2223 34455555544 45678999999999888776655554444444422 2244789998887
Q ss_pred HHHHH
Q 000361 403 RLADI 407 (1617)
Q Consensus 403 ~La~L 407 (1617)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77654
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.25 E-value=11 Score=47.44 Aligned_cols=135 Identities=14% Similarity=0.012 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000361 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1617)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++. . ..+..+...+....|-.+.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~~---~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALLA---Q-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHhc---c-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 4667777766655531 1 112358888899999888899999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000361 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1617)
Q Consensus 324 v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~ 403 (1617)
++..+.|= -.+....|...|.|.|..||.+++.+... ... -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99987421 13567788888899999999988855533 221 133433 344569999999999999
Q ss_pred HHHHHH
Q 000361 404 LADIFR 409 (1617)
Q Consensus 404 La~LY~ 409 (1617)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 987643
No 90
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=83.23 E-value=1.3e+02 Score=37.42 Aligned_cols=320 Identities=13% Similarity=0.090 Sum_probs=177.3
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcc----C---CCCC-CCCChhhHHHHHHHHHhhhhhh
Q 000361 66 KHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS----G---LKDT-GGPSFGRRVVILETLAKYRSCV 137 (1617)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~v~~f~----~---L~d~-~~p~f~~~~~lLe~la~vks~v 137 (1617)
...|++=|+-+-..|+.+||.|-- .|. ...+.+=+.+|+..+. . =.+| +...+.|..-+|-.+-.--.++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~-~~~-~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDN-LPD-RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcC-CCc-HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 445566566666669999998842 232 2334444444444332 1 1222 3445666666666665443343
Q ss_pred hhccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc--C----CCcH--HHHHH
Q 000361 138 VMLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R----NKND--TARRL 208 (1617)
Q Consensus 138 l~~DL~~~~Li~~lF~~ff~~v-~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~--~----~~~~--~a~~l 208 (1617)
-.++ ++...-+..+..... .+..++.+...-..+|..-==....++.+....|+..+. . .++- .+..+
T Consensus 81 ~~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 81 STLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hhCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2222 333334444444443 455677777666666554111122345555555554331 1 1111 66778
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhcc-h-hhhh-hhhhhcccccCCChHHHHHHHH
Q 000361 209 AMNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP-Q-ILSG-VVPYLTGELLTDQLDTRLKAVG 284 (1617)
Q Consensus 209 A~~vi~~~~dkL~~~i~q~f~~~l~~~-~~~~~~~~~~h~Li~eL~~~~P-~-lL~~-ViP~Le~eL~sdd~~~Rl~At~ 284 (1617)
=++++.++.+.|...+..+|-.++.+- +.......++..+..++-.+.+ + .+.. |...+...+..+ .+-..-++
T Consensus 158 ~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ 235 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHH
Confidence 889999999999999988876554321 1111122245666666554432 2 2222 333334444333 77788888
Q ss_pred HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000361 285 LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1617)
Q Consensus 285 llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ 364 (1617)
.+.+|+..++. ...=|++|..+..=..+.- .+ ......+.+.-...+++.+|..||.+|..
T Consensus 236 ~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~-------~~----------~w~~~n~wL~v~e~cFn~~d~~~k~~A~~ 296 (372)
T PF12231_consen 236 RLKEMIKSKDE--YKLAMQIWSVVILLLGSSR-------LD----------SWEHLNEWLKVPEKCFNSSDPQVKIQAFK 296 (372)
T ss_pred HHHHHHhCcCC--cchHHHHHHHHHHHhCCch-------hh----------ccHhHhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 89999988531 2334778987765543321 11 11224578888889999999999999998
Q ss_pred HHHHhhhhh-cC-CCCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHh
Q 000361 365 VICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1617)
Q Consensus 365 ai~~la~~~-l~-~V~~elL~--------~laeR~rDKK~-~VR~eAm~~La~LY~~~ 411 (1617)
+=.-+.+.. .+ ......++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 297 aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 297 AWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 877766622 11 11223332 23233333332 89999999999876433
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.70 E-value=8.6 Score=46.38 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=94.6
Q ss_pred HHHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC----------
Q 000361 248 VIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI---------- 316 (1617)
Q Consensus 248 Li~eL~~~-~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s---------- 316 (1617)
.++.|-.+ .|..+-..++.|+. .++..+|..|...||.+-.... +...+.-..|..
T Consensus 94 a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 94 AADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccc
Confidence 33344444 25555555555554 6899999999999998876542 222222233322
Q ss_pred --hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000361 317 --VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1617)
Q Consensus 317 --~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~ 394 (1617)
-.+|...+..... ... ...+..+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+
T Consensus 161 ~~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 161 ALLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL 227 (335)
T ss_pred hHHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH
Confidence 1577777666543 111 256778899999999999999999998877665 4455677888999999
Q ss_pred hHHHHHHHHHHHHHH
Q 000361 395 LVKRYTMERLADIFR 409 (1617)
Q Consensus 395 ~VR~eAm~~La~LY~ 409 (1617)
.||..++..|+.+=.
T Consensus 228 ~vr~~~~~~l~~~~~ 242 (335)
T COG1413 228 EVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHHhcccCc
Confidence 999999999987544
No 92
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=79.71 E-value=1.6e+02 Score=38.42 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=167.5
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHHHH---HHHhhcCCC--------CCC------ChhHHHHHHHHHHH-----h
Q 000361 53 QPFLNAIVQP--VLLKHQDKDVKLLVATCIC---EITRITAPE--------APY------SDDVLKDIFQLIVG-----T 108 (1617)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vr~~vAcCLa---dIlRI~APd--------aPy------~d~~LkdIF~l~v~-----~ 108 (1617)
+|....+|+. ++|+|+-++||.-.|--.+ -|+.-|.-. .-| ..+.|--|...|.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666677766 7899999999987654433 333322211 111 11334444444433 2
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhhhhccCCc-hHHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000361 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLEC-DELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1617)
Q Consensus 109 f~~L~d~~~p~f~~~~~lLe~l------a~vks~vl~~DL~~-~~Li~~lF~~ff~~v~--~~~~~~V~~~m~~IL~~vI 179 (1617)
|..+.-|-+.-.+.-.-||.+= ..+...-.+|+... --=..+-.+.+|.++. ..|.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4445555554455555555442 23333335566532 1224455566666654 2345555544444433322
Q ss_pred cccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCC----CCCcchHHHHH-HH
Q 000361 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEVI-YD 251 (1617)
Q Consensus 180 ~Ese~ip~~lLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~---~l~~~~~~----~~~~~~~h~Li-~e 251 (1617)
.. -=|++||+++|++|.-+.. -.++|..-+=.+-.-.|.-|+= +|.+=..+ .+..++++-.. .-
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 11 2489999999999853211 0112222111111222222321 12111111 11234554433 34
Q ss_pred HHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000361 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1617)
Q Consensus 252 L~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~-~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1617)
+.+.+-+.+.++.|.||+-|...|.-.|+.|..++-.+--.+ |.--....=.+.+-..--.-|.+|.|=..+.++...+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999998876543 3222223333444333455678998888777766543
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000361 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1617)
Q Consensus 331 L~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai 366 (1617)
-..-. ..-+.+++..-|.-|--+||.+-+.++
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 22111 135789999999999999999865554
No 93
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.74 E-value=9.7 Score=50.86 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=115.8
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcC-CCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C
Q 000361 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R 337 (1617)
Q Consensus 261 ~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~-~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~--~ 337 (1617)
..+.|-|.....+..-..|-.=...|...++. |..-+.-..|.++--.|.-..=-++.||+...+..+..+.-++. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 34566666666667777777778888888874 32334567889999999999989999999999999998887754 2
Q ss_pred CChHHHHHHHHhhhCCCh---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000361 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1617)
Q Consensus 338 ~~~~eii~~L~~rL~D~D---ekVR~aaV~ai~~la~~~----l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~ 409 (1617)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=..-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888888778888 679999999998887633 334466799999999999999999999987655443
No 94
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.47 E-value=1.1e+02 Score=37.23 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhcCCCcH--HHH--HHHHHHH-------H
Q 000361 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR--RLAMNVI-------E 214 (1617)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~ip~~lLd~IL~~l~~~~~~--~a~--~lA~~vi-------~ 214 (1617)
+-..+-+.|..++..+..+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .|+..+. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444555555555556666666666666666655554 789999999998877554432 222 2222221 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCC-CCCCcc-hHHHHHH--------------HHH----hhcchhhhhhhhhhcccccCC
Q 000361 215 QCAGKLEAGIKQFLVSSMSGDSR-PGHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1617)
Q Consensus 215 ~~~dkL~~~i~q~f~~~l~~~~~-~~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~eL~sd 274 (1617)
..+..+-+.+-+++.++...... ...... -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 22334445555556555544211 111112 2222222 011 112333333 3444443222
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhh-cHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000361 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1617)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~~~~a~~-y~~~w~~fL~R~~D~--s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL 351 (1617)
+ .=.-.++.+-.++.......... .....++|+-=.... ++.||...++....++..+|.. ....|+.+|...|
T Consensus 177 ~--d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 E--DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred h--HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 2 22345555555555432221111 133444666666666 6777777777777777766642 2345555655555
Q ss_pred CCCh
Q 000361 352 LDFD 355 (1617)
Q Consensus 352 ~D~D 355 (1617)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 95
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.12 E-value=28 Score=46.77 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC
Q 000361 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1617)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~ 354 (1617)
-.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| +.||--+|-+..+|-... ..-..--+..+..+|.||
T Consensus 944 ~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHhcCc
Confidence 45689999999999998876 7899888888877776544 677766555544433321 111123467788899999
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 355 DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 355 DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
++-||.+++.-+..+-.+.+-.-..+++--+---+-|-+..||..|=-.++.+...
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999998888877776666777665555666799999888777666666654
No 96
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.43 E-value=12 Score=51.35 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=99.8
Q ss_pred CcchHHHHHHHHH-----hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC
Q 000361 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1617)
Q Consensus 241 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~ 315 (1617)
..+.-.+++..+| ...| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+-.+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3444556666666 3345 667788888889999999999999999999975 34566667777777777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000361 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 382 (1617)
Q Consensus 316 s~~VR~~~v~~~~~iL~s~p~~---~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~--------~l~~V~~elL 382 (1617)
+--+|.+-...+-.+|.....+ .-..-++.-|..|+-|.+|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777766666532111 11234778899999999999999999999887652 2345667766
No 97
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.37 E-value=21 Score=49.05 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH----hhh-cC
Q 000361 242 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 314 (1617)
Q Consensus 242 ~~~~h~Li~eL~~~--~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL----~R~-~D 314 (1617)
.+++.+|+..|-++ .-..|-.|+|++-+-+.....++|..|+.||.++++.-. ++....-.+|.+|| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678888888765 556788899999999999999999999999999998642 34443344444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHh------------------cCCC---------CCChHHHH----HHHHhhhCCChhHHHHHH
Q 000361 315 -RIVAVRMSVLEHVKSCLL------------------TDPS---------RADAPQIL----TALCDRLLDFDENVRKQV 362 (1617)
Q Consensus 315 -~s~~VR~~~v~~~~~iL~------------------s~p~---------~~~~~eii----~~L~~rL~D~DekVR~aa 362 (1617)
-...||++...+++.+-. +.|. ..+..++. ..+...|.|++.-||.+-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567799998877765332 1111 11222333 344456788888888888
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHH
Q 000361 363 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRY 399 (1617)
Q Consensus 363 V~ai~~la~~~l~~V~~e-lL~~laeR~rDKK~~VR~e 399 (1617)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|..
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHH
Confidence 888877765544443444 4566666677777776643
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=76.33 E-value=17 Score=43.74 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.||.+++.++..+. .......+.++++|....||..|...|+.+-..
T Consensus 164 ~~r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 164 DVRAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 55665555543321 223345566777777778888888888877654
No 99
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=75.08 E-value=3.6 Score=44.99 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
-+++.++++..+..-..++-++-..+.+.....-..=+.+|+.|.... ......|.+..++|+.-+....+.+-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888877777665543344578888887653 2456778888899999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~ 368 (1617)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234677888888999999999999998864
No 100
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=75.02 E-value=9.5 Score=49.78 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.6
Q ss_pred cHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCC
Q 000361 301 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 378 (1617)
Q Consensus 301 y~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~V~ 378 (1617)
|+.-+. ..++=|.=.+..||+..+++..+.+-.-+..-...+|...|..-+.|+++.+|..+|+++..+|. -+-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 33455666788999999999988665332212234788999999999999999999999988886 3445688
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000361 379 VETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1617)
Q Consensus 379 ~elL~~laeR~rDKK~~VR~eAm~~La~LY 408 (1617)
.|+|+.++.---|-...+|..+-.+||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988877888889988888877763
No 101
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.92 E-value=3.6e+02 Score=37.70 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-------HHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhh-hhhhhhcccccCC
Q 000361 205 ARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLTD 274 (1617)
Q Consensus 205 a~~lA~~vi~~~~dkL~~~i~q~-------f~~~l~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViP~Le~eL~sd 274 (1617)
+--+|.....+|--.+..+|.+| |+..+...=.-=+..++ +-.-+.+|....|..+. .|+|.|=....+.
T Consensus 515 ~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 515 IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSK 594 (1133)
T ss_pred cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCC
Confidence 34566677778877777777776 33333321000001111 22334458889999999 5889888889999
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC
Q 000361 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1617)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~ 354 (1617)
+...|.-++-..|.+++.-. .-+|-+.. ..+=|++|... ++..++++-.+.
T Consensus 595 ~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFYR 645 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhcc
Confidence 99999999998888886421 11111111 22233333322 222333333333
Q ss_pred h--hHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000361 355 D--ENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1617)
Q Consensus 355 D--ekVR~aaV~ai~~la~~~l~----~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~ 413 (1617)
- +..|.++++.|..+.-.... .+-......+++-+++-+ .+|..|...++.++..|+.
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 3 55666666666555444332 222223344555555555 7999999999999998874
No 102
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.87 E-value=3e+02 Score=36.80 Aligned_cols=213 Identities=21% Similarity=0.207 Sum_probs=127.5
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc-C--CCcHHHHHHHHHHHHHh
Q 000361 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 216 (1617)
Q Consensus 141 DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~-~--~~~~~a~~lA~~vi~~~ 216 (1617)
+++ -+|++..+|.+++..+ .....+|..-.+.|+..+.++--.|+.+|-+.|...+. + .+. ++-++-.-+ |
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~---a 149 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVL---A 149 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC-chHHHHHHH---H
Confidence 454 4789999999888643 34567899999999999999999999999988776542 1 111 111111100 0
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000361 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1617)
Q Consensus 217 ~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~ 296 (1617)
.. +|.+ + +.+....+-.++..|-+..| +.++|..|.-. ++..
T Consensus 150 Ls--------rlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLsn----I~vd--- 191 (892)
T KOG2025|consen 150 LS--------RLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALSN----ISVD--- 191 (892)
T ss_pred HH--------HHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHHh----hccC---
Confidence 11 1211 1 22233445555555444444 57788877542 3221
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000361 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1617)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~ 376 (1617)
++|+-.-++|..|.+..+|..+-+.+-.=+ +--...+..-+-.|..-|.|-++-||.|.+.+|..-. +..
T Consensus 192 -----nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W---l~~ 261 (892)
T KOG2025|consen 192 -----NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW---LRF 261 (892)
T ss_pred -----cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH---hhh
Confidence 235667789999999999988777654322 1111112233346666789999999999888884433 333
Q ss_pred CCHHHHHHHHHhhcc-CChhHHHHHHHHHHHH
Q 000361 377 IPVETVKLVAERLRD-KSVLVKRYTMERLADI 407 (1617)
Q Consensus 377 V~~elL~~laeR~rD-KK~~VR~eAm~~La~L 407 (1617)
....+++.| +|+-= ....|+..|++.|-..
T Consensus 262 ~dgni~ElL-~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 262 SDGNILELL-ERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred ccccHHHHH-HHhccccchHHHHHHHHHHHHH
Confidence 333444333 44432 2347888888887764
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.40 E-value=97 Score=36.61 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcc---hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000361 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP---QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1617)
Q Consensus 217 ~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P---~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~ 293 (1617)
..+++.||.+-...++... ..+..+.....++..| .+.+ .++.+.||.+-.-|.+.++.+|..|.++|..|-..|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-LNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 3455556655555544431 1111222233444443 1222 345556777766677899999999999998776665
Q ss_pred CC---CchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCC------C---------CCChHHHHHHHHhhhCCC
Q 000361 294 GS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDP------S---------RADAPQILTALCDRLLDF 354 (1617)
Q Consensus 294 ~~---~~a~~y~~~w~~fL~R~~D~s~~VR~~-~v~~~~~iL~s~p------~---------~~~~~eii~~L~~rL~D~ 354 (1617)
.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+.... . ..+.+.+.+.|......+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 21 123344666777777877777777765 4444444443221 0 123455667777778889
Q ss_pred hhHHHHHHH
Q 000361 355 DENVRKQVV 363 (1617)
Q Consensus 355 DekVR~aaV 363 (1617)
|+.||.+||
T Consensus 246 d~ev~~~v~ 254 (254)
T PF04826_consen 246 DPEVKEQVI 254 (254)
T ss_pred CHHHhhhcC
Confidence 999998864
No 104
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=74.20 E-value=1.5e+02 Score=42.23 Aligned_cols=225 Identities=16% Similarity=0.224 Sum_probs=122.2
Q ss_pred HhccCCCCCC---CCChhhHHHHHHHHHhhhhhh-hhccCCchHHHHHH---------HHHHHHhhcCCChhhHHHHHHH
Q 000361 107 GTFSGLKDTG---GPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1617)
Q Consensus 107 ~~f~~L~d~~---~p~f~~~~~lLe~la~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~V~~~m~~ 173 (1617)
.+|++++.|. +..-.++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..--|.++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 4677777652 333445666776665432211 11121135555555 5566676777778899988888
Q ss_pred HHHHHhcccccccHHHHHHHHHh-hcC-CCcH---------HHHHHHHHHHHHhhhhhHHHHHHHHHHh-----hcCCCC
Q 000361 174 IMIVLLEESEDIQEDLLVILLSA-LGR-NKND---------TARRLAMNVIEQCAGKLEAGIKQFLVSS-----MSGDSR 237 (1617)
Q Consensus 174 IL~~vI~Ese~ip~~lLd~IL~~-l~~-~~~~---------~a~~lA~~vi~~~~dkL~~~i~q~f~~~-----l~~~~~ 237 (1617)
++..-..-.-..|...|..||.. +.. +.++ |--+|..+-+..-.......+.++|.+- +.++
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 88887766668899999988853 321 1111 2222333222221111111111111111 1111
Q ss_pred CCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCC-hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC
Q 000361 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI 316 (1617)
Q Consensus 238 ~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd-~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s 316 (1617)
....+-..|..|-+-.+..+..|+-++- ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.++.+-+
T Consensus 926 ---~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~l~~L~ 994 (2196)
T KOG0368|consen 926 ---RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRKLTELN 994 (2196)
T ss_pred ---CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHHHHhhc
Confidence 0112234566666555555666654442 2222 2223455666666554 33 455677888888888888
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000361 317 VAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1617)
Q Consensus 317 ~~VR~~~v~~~~~iL~s~p~~~~~~eii 344 (1617)
...-.++.-.|.+||...|+..+....+
T Consensus 995 ~~~~~eVal~Ar~iLi~~ps~~~R~n~~ 1022 (2196)
T KOG0368|consen 995 HTNTSEVALKARQILIQSPSYELRHNQI 1022 (2196)
T ss_pred cchHHHHHHHHHHHHHhCcchhhhHHHH
Confidence 8888888888889998887644433333
No 105
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.81 E-value=86 Score=42.09 Aligned_cols=116 Identities=17% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhhhhccCC---chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000361 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE---CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1617)
Q Consensus 113 ~d~~~p~f~~~~~lLe~la~vks~vl~~DL~---~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~-ip~~ 188 (1617)
.+|++|-| ++|+.|+++-+ +.-.|+-. -..+...||=.|-.+.+.+ =.....+...||+.+++-+.. +|..
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 45667744 47889998753 33345544 1346666664444443321 235667788999999998876 8887
Q ss_pred HHHHHHHhhcCC---Cc---HHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhc
Q 000361 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMS 233 (1617)
Q Consensus 189 lLd~IL~~l~~~---~~---~~a~~lA~~vi~~~~dkL~-----~~i~q~f~~~l~ 233 (1617)
...++.-.+.++ ++ .+.-+|-..++...+.... .+|-.+|.-++.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 665444333321 12 2555677777766654433 344456655543
No 106
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.39 E-value=44 Score=43.97 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH---------------H
Q 000361 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 308 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~---------------f 308 (1617)
++--++|.++---|+-|-..+|-|-+.|..+|+.+-..||..+.++-....-++..--|..|+- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5667888888888999999999999999999999999999999988765544443333333321 1
Q ss_pred HhhhcCCChhHHHHHHHHhHHHHh-----------------c-----CCCCCCh-HHHHHHHHhhhCCChhHHHHHHHHH
Q 000361 309 LKRLTDRIVAVRMSVLEHVKSCLL-----------------T-----DPSRADA-PQILTALCDRLLDFDENVRKQVVAV 365 (1617)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~iL~-----------------s-----~p~~~~~-~eii~~L~~rL~D~DekVR~aaV~a 365 (1617)
.+...=..|..+...++-.-.++. . +|.+... .-.+..|+..+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 234444556666555544333222 1 2332222 2334777888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000361 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1617)
Q Consensus 366 i~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~ 409 (1617)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-.
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 999999998887653 1223455678999999999988754443
No 107
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.05 E-value=4.7 Score=34.33 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000361 366 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 404 (1617)
Q Consensus 366 i~~la~~~l~~V~~-elL~~laeR~rDKK~~VR~eAm~~L 404 (1617)
+..+....+..... .++..+..|+.|.++.||+.|++.|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444444444433 5678999999999999999998764
No 108
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.09 E-value=3.1e+02 Score=35.24 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000361 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1617)
Q Consensus 116 ~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~ 195 (1617)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44566777777777766655432 2455555555555554443344444555677777776 67899999988887
Q ss_pred hhcC-----CCcHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCCc---ch--HHHHHHHHHhh----cchh-
Q 000361 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHSH---ID--YHEVIYDVYRC----SPQI- 259 (1617)
Q Consensus 196 ~l~~-----~~~~~a~~lA~~vi~~~-~dkL~~~i~q~f~~~l~~~~~~~~~~---~~--~h~Li~eL~~~----~P~l- 259 (1617)
-|-. .-.+++++..++||... ...+-..++.++ .+.+...... ++ .+-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6622 22348899999888532 333334444333 2211111110 11 12222234555 3332
Q ss_pred --hhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000361 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1617)
Q Consensus 260 --L~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs 291 (1617)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33599999999998888777788888888883
No 109
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=70.71 E-value=6.1 Score=50.42 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=71.8
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000361 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1617)
Q Consensus 302 ~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~e 380 (1617)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.+.++.=-|.|..+.||+.+++.+--+..+.++. +
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---D 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---h
Confidence 44554 7999999999999999999999888776642111123445555699999999999999986655544331 1
Q ss_pred HHHHHHHhhc---------cCChhHHHHHHHHHHHHHHH
Q 000361 381 TVKLVAERLR---------DKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 381 lL~~laeR~r---------DKK~~VR~eAm~~La~LY~~ 410 (1617)
.++.+.+|-+ |=.. ||-.+++.|..+--.
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 3444444443 4444 888888888766443
No 110
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.44 E-value=11 Score=48.02 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=85.4
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh-----cC
Q 000361 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-----TD 334 (1617)
Q Consensus 262 ~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~--~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~-----s~ 334 (1617)
+++|.+-.-|.+.+..+|-.|+-.||.+.+... .+++-.+ .+....|.=++.... +.++..+...|. .+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456667777889999999999999999988742 1111111 122223333333232 344444433333 23
Q ss_pred CC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000361 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1617)
Q Consensus 335 p~--~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V----~~elL~~laeR~rDKK~~VR~eAm~~La~ 406 (1617)
|. .+.+..++.+|...|+..|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999988876654333322 22233345555555556666555555554
No 111
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.22 E-value=52 Score=43.33 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=116.3
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Q 000361 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 229 (1617)
Q Consensus 151 lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~-i~q~f~ 229 (1617)
.|-.+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 366666666644433322 3333333221 2333444555555444456777777777766 333322 223333
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC----C---------CCC
Q 000361 230 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 296 (1617)
Q Consensus 230 ~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~----~---------~~~ 296 (1617)
.+..- +-+-.+++|..+.+.+.......+..+|..|.-.+|.|.-. . ...
T Consensus 420 ~l~~~-----------------~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPFH-----------------VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHHT----------------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHhh-----------------cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 32111 11223445555555555544456678888888888877632 1 223
Q ss_pred chhhcHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC---hhHHHHHHHHHHHHhhhh
Q 000361 297 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 372 (1617)
Q Consensus 297 ~a~~y~~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~---DekVR~aaV~ai~~la~~ 372 (1617)
....|-.-+...|+. ....+..-++.++++++++ .+| .++..|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665656655553 3456778999999999974 233 4667777777666 899999998888655443
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000361 373 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1617)
Q Consensus 373 ~l~~V~~elL~~laeR~rDKK--~~VR~eAm~~La~ 406 (1617)
. |..+...+..-..|.. +.||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 3344444444445443 6799988877765
No 112
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=70.12 E-value=2.2e+02 Score=35.52 Aligned_cols=229 Identities=18% Similarity=0.191 Sum_probs=122.1
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCC
Q 000361 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1617)
Q Consensus 300 ~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~V~ 378 (1617)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+. +.+-+++-.+.+-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66666777666665555555554 56777777666764 5578888889999999999999887765544431 11111
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCCCCC
Q 000361 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1617)
Q Consensus 379 ~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~ 458 (1617)
..+.+.|- --.|+.||...-. .+...-...+..|-++|+ |..
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl~----------------------~l~ 140 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKLI----------------------TLK 140 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHhh----------------------ccc
Confidence 11222221 1234455554311 000000112333333333 322
Q ss_pred CC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHH
Q 000361 459 FS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFC 522 (1617)
Q Consensus 459 ~~--~~~R----~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~-----d~~ei~~kL~~~ 522 (1617)
-. .++- +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+- ..++...++-+|
T Consensus 141 ~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 141 GEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISC 220 (460)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHH
Confidence 11 1111 112224456677778888888887776665 3455555443322221 124444455555
Q ss_pred HHHHHhhcCCchHHHHHHH---------HHHhhccHHHHHHHHHH--hcCCCCHHHHH
Q 000361 523 FRVMSRSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFDQAF 569 (1617)
Q Consensus 523 i~~Ls~~fPDp~Ka~~~L~---------kf~klnD~Ri~klLk~~--id~~t~~~t~~ 569 (1617)
...-.-+|.-..+....+. .|+++-+.|=..+||.+ |++.|+.+.+.
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~ 278 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAAR 278 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHH
Confidence 5544456655554444433 35666688888888888 55556554443
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.00 E-value=2.3e+02 Score=37.10 Aligned_cols=258 Identities=17% Similarity=0.235 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHhh--
Q 000361 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA-- 217 (1617)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-----e~ip~~lLd~IL~~l~~~~~~--~a~~lA~~vi~~~~-- 217 (1617)
.+.++|.-+...++. |-.++...++.-|..+|--. ..-..+...+++..|...... .--.+..++|.+..
T Consensus 396 ~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 396 QFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 344444444444432 33445555555555555332 245667788888888543221 23334444443321
Q ss_pred --hhhHHHH-HHHHHHhh----cCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000361 218 --GKLEAGI-KQFLVSSM----SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1617)
Q Consensus 218 --dkL~~~i-~q~f~~~l----~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mf 290 (1617)
.+|...| ..||.-.- .+| ..+....-+-.++..=.--+|.+.--++-+ ++.+-++.|..++.++.++|
T Consensus 475 tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 475 TPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred CHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHHH
Confidence 2333333 23443221 122 222223333344444444566666665544 55578899999999999999
Q ss_pred cCCCCC-c----------------------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000361 291 AVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1617)
Q Consensus 291 s~~~~~-~----------------------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~~ 328 (1617)
+.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.++
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 876421 1 1122 677889999999999999999888877
Q ss_pred HHHh--cCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHHHH
Q 000361 329 SCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRYTM 401 (1617)
Q Consensus 329 ~iL~--s~p~-~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~V--~~-elL~~laeR~rDKK~~VR~eAm 401 (1617)
.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++|||.+-. +.|... |. .+|-++.--+|.|..+|-..+|
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 6432 2222 11111122345555666778888888899988754 445544 22 3556777888999999999999
Q ss_pred HHHHHHHHH
Q 000361 402 ERLADIFRG 410 (1617)
Q Consensus 402 ~~La~LY~~ 410 (1617)
..++.+-..
T Consensus 710 ~lvg~I~~~ 718 (975)
T COG5181 710 ALVGTICMN 718 (975)
T ss_pred HHHHHHHhc
Confidence 988887664
No 114
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=69.63 E-value=44 Score=41.43 Aligned_cols=185 Identities=16% Similarity=0.272 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhh--------hhccCC-chHH----HHHHHHHHHH
Q 000361 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCV--------VMLDLE-CDEL----VNEMYSTFFA 157 (1617)
Q Consensus 96 ~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~l-Le----~la~vks~v--------l~~DL~-~~~L----i~~lF~~ff~ 157 (1617)
.-++++|.+|+.-+..+.-..++|-.+..-= +. .+.-..... +.++-+ ..++ +..+=..|+.
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~ 218 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLE 218 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhc
Confidence 3489999999998888887788887665321 11 111111111 112222 1122 2222223333
Q ss_pred hhcCCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HhhcCCC-c----HHHHHHHHHHHHHhh-------
Q 000361 158 VASDDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGRNK-N----DTARRLAMNVIEQCA------- 217 (1617)
Q Consensus 158 ~v~~~~~~~V~~~m~~IL~~vI~E----se~ip~~lLd~IL----~~l~~~~-~----~~a~~lA~~vi~~~~------- 217 (1617)
. .+.-|+.=...+..++.+++.+ ....-..++..++ .++.--. . .-|-.+-..+++.|.
T Consensus 219 ~-~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~ 297 (373)
T PF14911_consen 219 F-KGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEP 297 (373)
T ss_pred C-CCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchH
Confidence 2 2222333333334444455555 2222222333222 2221111 1 134444444455554
Q ss_pred -hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccC--------CChHHHHHHHHHHH
Q 000361 218 -GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLVG 287 (1617)
Q Consensus 218 -dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~s--------dd~~~Rl~At~llG 287 (1617)
+.|+..+++|..+-+.- ....++.++..|...+|+++.+.||.|+.+|.. .|...|..=-++++
T Consensus 298 ~~~l~s~lrsfvqk~l~~------~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 298 REQLTSVLRSFVQKYLAH------YTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 44555555555442111 123689999999999999999999999998863 36667766555554
No 115
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.49 E-value=2.3e+02 Score=38.82 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCCcchHHHHHHHHHhhcchhh-----hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH-HHHhhh
Q 000361 239 GHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKRL 312 (1617)
Q Consensus 239 ~~~~~~~h~Li~eL~~~~P~lL-----~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~-~fL~R~ 312 (1617)
....-.+|+.+--+-...|.-. ...+|.|=+-|.-.|+.+|+-+++++-..+-..+ .+...|-+++- .+|.=-
T Consensus 881 ~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls 959 (1030)
T KOG1967|consen 881 GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLS 959 (1030)
T ss_pred ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcC
Confidence 3344457777777777777521 2356677788999999999999999998887655 57777766554 666555
Q ss_pred cCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000361 313 TDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1617)
Q Consensus 313 ~D~s---~~VR~~~v~~~~~iL~s~p~~---~~~~eii~~L~~rL~D~DekVR~aaV~ai 366 (1617)
.|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+=
T Consensus 960 ~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 960 SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 5555 889999999987765534432 23458999999999999999999987653
No 116
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.67 E-value=9 Score=30.10 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 382 L~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45567888999999999999999999863
No 117
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=68.39 E-value=3.7e+02 Score=35.13 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch-hhhcCCCcchHHHHHHHHHHHH
Q 000361 6 EQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQP-VLLKHQDKDVKLLVATCICEIT 84 (1617)
Q Consensus 6 ~~~l~~~g~kL~~~~~s~~eLlkrL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~-~LL~HkD~~Vr~~vAcCLadIl 84 (1617)
|-.+-.||+-+.+|.. +.|.+..-++---+-.+.-++.--..+.-.-++-.+.+. .-.-++-..+-..|..|+--++
T Consensus 384 eaavmAfGSvm~gp~~--~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 384 EAAVMAFGSVMHGPCE--DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHHhhhhhcCccH--HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHH------------HhhhhhhhhccCC--chHHHH
Q 000361 85 RITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETL------------AKYRSCVVMLDLE--CDELVN 149 (1617)
Q Consensus 85 RI~APdaPy~d~~LkdIF~l~v~~f~-~L~d~~~p~f~~~~~lLe~l------------a~vks~vl~~DL~--~~~Li~ 149 (1617)
|-||-..--.--|.=|+.+|. .-.+..++.|+.|.-||..| +.+-.|--+.-|= |-+-+.
T Consensus 462 -----D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 462 -----DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred -----ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHhhc----------------------CCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHH
Q 000361 150 EMYSTFFAVAS----------------------DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1617)
Q Consensus 150 ~lF~~ff~~v~----------------------~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~~~a~~ 207 (1617)
++.-.|++.+. .+.+.+....+..|...-=...+.+...++...+..+...+..-++.
T Consensus 537 ~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 537 DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHH
Q 000361 208 LAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 287 (1617)
Q Consensus 208 lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG 287 (1617)
=.---|..-+..|+..+.+|... .+|+|..-|.-.|-.+=.-|+.++|
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~--------------------------------fiPyl~~aln~~d~~v~~~avglvg 664 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASK--------------------------------FIPYLTRALNCTDRFVLNSAVGLVG 664 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHHHhcchhHHHHHHHHHHHH
Q ss_pred HhhcCCCCCc-----------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh-------cCCCCCChHHH
Q 000361 288 DLFAVPGSAN-----------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-------TDPSRADAPQI 343 (1617)
Q Consensus 288 ~mfs~~~~~~-----------------a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~-------s~p~~~~~~ei 343 (1617)
++--.-+.+| ...|+++=-+-|.-|.|+...|-..+..+.-.|.+ ..|+..+
T Consensus 665 dlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~---- 740 (858)
T COG5215 665 DLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDE---- 740 (858)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCc----
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHh
Q 000361 344 LTALCDRLLDFDENVRKQVVAVICDV 369 (1617)
Q Consensus 344 i~~L~~rL~D~DekVR~aaV~ai~~l 369 (1617)
--..|.-.++|..++.++..+
T Consensus 741 -----~~~~dy~~~~~~~v~~ayVgI 761 (858)
T COG5215 741 -----VYVDDYRKNAVQLVNCAYVGI 761 (858)
T ss_pred -----eeHHHHHHHHHHHHHHHHHHh
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.55 E-value=1.6e+02 Score=35.81 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=39.7
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhh--cchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000361 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1617)
Q Consensus 648 ~~Li~lL~~~~~~~~~~aLkiLak~~--k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~ 714 (1617)
.+.++.|.+......+.+|..|.++- .++.+.+......+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555455667777666442 22233332223346666777777899888889988865443
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=66.30 E-value=20 Score=35.70 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000361 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1617)
Q Consensus 268 e~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L 347 (1617)
-.+|....+++|-.+..+|.+++..+. .....-+.+..-|+.=..|-++=|=..+|+....+...+|. +++..|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999875 34556789999999999999999999999999988877764 688999
Q ss_pred HhhhCCChhH
Q 000361 348 CDRLLDFDEN 357 (1617)
Q Consensus 348 ~~rL~D~Dek 357 (1617)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 9988887753
No 120
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.26 E-value=1.2e+02 Score=36.87 Aligned_cols=150 Identities=16% Similarity=0.184 Sum_probs=93.6
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcC--CCCCchhhcHHHHHHHHhhhcCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000361 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1617)
Q Consensus 263 ViP~Le~eL~sdd~~~Rl~At~llG~mfs~--~~~~~a~~y~~~w~~fL~R~~D~s--~~VR~~~v~~~~~iL~s~-p~~ 337 (1617)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|.+|+.+.+-+..-. ...
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 444555566666678889999999977544 345555666666665555556655 578999988776544322 122
Q ss_pred CChHHHHHHHHh---h-hCCC-----------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000361 338 ADAPQILTALCD---R-LLDF-----------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1617)
Q Consensus 338 ~~~~eii~~L~~---r-L~D~-----------DekVR~aaV~ai~~la~~~l----~~V~~elL~~laeR~rDKK~~VR~ 398 (1617)
.+..++++.|.. . .... +..|..+|+.+.+=+..... ...-.+.+..|.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333344441 1 1111 35688888888766653221 112223455667777777899999
Q ss_pred HHHHHHHHHHHHhh
Q 000361 399 YTMERLADIFRGCC 412 (1617)
Q Consensus 399 eAm~~La~LY~~~~ 412 (1617)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 121
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=66.00 E-value=42 Score=45.91 Aligned_cols=92 Identities=23% Similarity=0.409 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccC-------CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCCh
Q 000361 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1617)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~s-------dd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~ 317 (1617)
+-.++..|+.|-|++-..++-+|..+... -+...++..|+.+|.|..-.-......+ +....+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999887752 3688899999999999865322222222 356678888988999
Q ss_pred hHHHHHHHHhHHHHhcCCCC
Q 000361 318 AVRMSVLEHVKSCLLTDPSR 337 (1617)
Q Consensus 318 ~VR~~~v~~~~~iL~s~p~~ 337 (1617)
++=+.+++.|+.+|.++|..
T Consensus 560 Em~c~lLE~~GrfLlr~pEt 579 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPET 579 (1128)
T ss_pred HHHHHHHHhcchhhhcChhH
Confidence 99999999999999999863
No 122
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.84 E-value=4.7e+02 Score=35.38 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 343 ii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.+..|..-..|+=+.|+..++++|.++-+..++. -..+|..|...+-|+...|=..|--.|-.|-+.
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 4444444445555555555555554443333221 011344444555555544444444444444443
No 123
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.87 E-value=71 Score=35.93 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhcC-CCCCc---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-------
Q 000361 278 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1617)
Q Consensus 278 ~Rl~At~llG~mfs~-~~~~~---------------a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~------- 334 (1617)
+|+.|..+|+.++.. +.-.+ ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999876 32111 112244444443 4999999999999998887632
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCChhHHHHHHHHHHHHhhhhh-cCCCCHHH----HHHHHHhhccCC
Q 000361 335 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVACHA-LNSIPVET----VKLVAERLRDKS 393 (1617)
Q Consensus 335 -----p~~---~~---~~eii~~L~~rL-----~D~DekVR~aaV~ai~~la~~~-l~~V~~el----L~~laeR~rDKK 393 (1617)
+.. .. ...++..+...| ...+-.+=.+.++++..+.... ++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 124444444443 4556667778888887776533 56677765 457788899999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000361 394 VLVKRYTMERLADIFRG 410 (1617)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1617)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 124
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=63.86 E-value=12 Score=35.02 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.1
Q ss_pred cCCeEEEecCCC---CceEEEEEEEecCCCCeeEEEccC
Q 000361 1319 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1354 (1617)
Q Consensus 1319 vG~ri~v~Wp~D---~~~Y~G~v~~y~~~~~~H~v~YdD 1354 (1617)
.|.+|.|+--.+ .+||.|+|...+... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 699999999999876 99999964
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.54 E-value=4.5e+02 Score=34.40 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=170.3
Q ss_pred CChhhHH-HHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHH
Q 000361 118 PSFGRRV-VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILL 194 (1617)
Q Consensus 118 p~f~~~~-~lLe~la~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~V~~~m~~IL~~vI~Ese~ip~~lLd~IL 194 (1617)
..|.++. ..||-=--||-|+.-.|.+ -+.+|.++-..|--.-..++.+ .+.......+..=++... .-..++-+++
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHH
Confidence 4455543 2333222344555444443 2456666666554322222222 233222222222232222 4566777788
Q ss_pred HhhcCCCcH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCCCCCCCCcchHHHHHHHHHhh-----c
Q 000361 195 SALGRNKND-------TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S 256 (1617)
Q Consensus 195 ~~l~~~~~~-------~a~~lA~~vi~~~~dkL~~~i~q~f~~~l------~~~~~~~~~~~~~h~Li~eL~~~-----~ 256 (1617)
..|...... +.|++|+ -|-. .|--||+.+. ..|+.. .....-+|+-.|.+- +
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaK----v~k~----~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAK----VAKG----EVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHH----Hhcc----CcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccc
Confidence 888654322 4566655 2222 2334454432 122111 111223333333322 2
Q ss_pred -chhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh---
Q 000361 257 -PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--- 332 (1617)
Q Consensus 257 -P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~--- 332 (1617)
-=-|...||.|.+-+-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.=..|-+.+||..+=.+..++|.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 2236779999999999999999999999999999999999998889999999999999999999887776666664
Q ss_pred cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HH
Q 000361 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LA 405 (1617)
Q Consensus 333 s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V---~~elL~~laeR~rDKK~-~VR~eAm~~---La 405 (1617)
+.|+.-+..++++-+...+.-+++..+..|+.-|.++.......+ -..+|..+..-+-|+-. .++..|... |.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 567653456899999999999999999999888877766443322 12345555666667665 456554333 44
Q ss_pred HHHHHh
Q 000361 406 DIFRGC 411 (1617)
Q Consensus 406 ~LY~~~ 411 (1617)
.+...+
T Consensus 321 ~l~s~~ 326 (675)
T KOG0212|consen 321 KLVSSE 326 (675)
T ss_pred HHHhhh
Confidence 444443
No 126
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.46 E-value=2.3e+02 Score=39.35 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000361 275 QLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1617)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~~-~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D 353 (1617)
+.-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||++.|-+.+.+|.+-..+-+ --....+.+.|
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd---e~~~~~~~~~~ 689 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD---EQTLVVEEEID 689 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc---hhhhhhhhhhc
Confidence 688999999999999986431 12223334445566667899999999999999998876432111 11122233444
Q ss_pred -ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000361 354 -FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 354 -~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~ 412 (1617)
+|++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 690 l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 690 LDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred chhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 4444444311 11112356788999999999998888888766553
No 127
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=62.11 E-value=76 Score=41.72 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=99.2
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc
Q 000361 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1617)
Q Consensus 102 F~l~v~~f-~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~ 180 (1617)
|..++.+| ......+.+.-.+-..+| -....||-++|-.|..||..+++.-.- +.++.+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L---~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWL---KALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHH---HHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 45555555 333333444434444444 444567777887788998888777332 2355677777777777777
Q ss_pred ccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHhhcch
Q 000361 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR--PGHSHIDYHEVIYDVYRCSPQ 258 (1617)
Q Consensus 181 Ese~ip~~lLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~--~~~~~~~~h~Li~eL~~~~P~ 258 (1617)
....--..+|+.|..+|.+.....+-. .+... .......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777788888888886642210000 11111 111233689999999999999
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000361 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1617)
Q Consensus 259 lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1617)
....++|.|....=.-..+.+...+ -+-.|+...+. ...--..+|..-+.|...++++|.+.|
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9988888877766554444433322 22222222110 123334666666666666666555544
No 128
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=61.66 E-value=16 Score=38.45 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.4
Q ss_pred CCeEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeeec
Q 000361 1320 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 1362 (1617)
Q Consensus 1320 G~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdDgd~E~l~l 1362 (1617)
|.+|=..|+.|.-||.|+|..+- ..+.-.|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 78899999999999999999998 6677888888888877644
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.32 E-value=59 Score=35.73 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCcccc----HHHHHHHHhhccc-cchhhHHHHHHHhhcc
Q 000361 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGT----EEELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1617)
Q Consensus 602 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~----~~~Li~lL~~~~~-~~~~~aLkiLak~~k~ 675 (1617)
+++.+..+..++..--.+.+....-.+.-|+..+...+ |++|..| +..|+.+|+..++ .+.+.++.+|..+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654332322222234668999999998 9999666 3666777776443 3556677777665432
Q ss_pred hHhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 000361 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1617)
Q Consensus 676 ~~e~~~~~~s~l~~~L~~lal~-Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~ap 754 (1617)
++.+ +. +..+ +||...+....+|..+.+ ..-....|.+|+.+-+..|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2222 11 1111 356666665555543222 1123567888999999999
Q ss_pred cccccchHHHHHHHHHh
Q 000361 755 PVFETRESEIEEFIKSK 771 (1617)
Q Consensus 755 ~vfe~~~~eI~~fiik~ 771 (1617)
..|-.+...|..+++.-
T Consensus 147 tt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 147 TTFRPFANKIESALLSL 163 (165)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999999888753
No 130
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.24 E-value=3.4e+02 Score=32.24 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=43.8
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~la~~~l-~~V~~e----lL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
..|...|.+.|+.+|..++..++.+...-. ..++.+ ++..+..|+.|.. .|.- |+.+|..|.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhC
Confidence 467889999999999999999887765443 223332 3467778886653 3433 37777777743
No 131
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=60.83 E-value=5.8e+02 Score=34.73 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=83.7
Q ss_pred hhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000361 545 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 614 (1617)
Q Consensus 545 klnD~Ri~klLk~~id~~t~~~t~-~~a~kELlkkL~~~~~---~~e~l~~Ll~R~S~------li~Nks~V~~LL~~v~ 614 (1617)
+-+|+=++++|+++...+...+.. ......|++.+..... ..+.+-+|-.-..+ ++-+-.-|+.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457888999999998776443333 3445566666654322 34555554332211 2323455666666553
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchhhHHHHHHHhhcchHhh-----hhc
Q 000361 615 AQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-----LAA 682 (1617)
Q Consensus 615 ~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~-----~~~ 682 (1617)
.. ...++ . ..+....++..+ ..++. +.+..|+++|....+ --+-+||+++-+...+... +-
T Consensus 544 ~g-~~~dD-l---~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll- 616 (708)
T PF05804_consen 544 PG-ASEDD-L---LLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLL- 616 (708)
T ss_pred CC-CCChH-H---HHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHH-
Confidence 21 11121 1 223333333221 22222 457899999987433 2467889888776543321 11
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcC
Q 000361 683 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITK 715 (1617)
Q Consensus 683 ~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~ 715 (1617)
........|-.+.-..++..+|.|=.||-.+..
T Consensus 617 ~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 617 KETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 112233444444444555666666666554443
No 132
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.70 E-value=5.7e+02 Score=34.63 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=90.5
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHH
Q 000361 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 330 (1617)
Q Consensus 256 ~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s--~~VR~~---~v~~~~~i 330 (1617)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | +.+|+++..- -||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~I-iRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTI-IRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHH-hheeeccCchHHHHHHHHHHHHcc--
Confidence 3444444445677788999999999999988777765 3 4556655433 2443211 122111 112222
Q ss_pred HhcCCCCCChHHH---HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 331 LLTDPSRADAPQI---LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 331 L~s~p~~~~~~ei---i~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
.+++++....|. .++++.=|.-|.|=||-.+..-+|.+--..+- +.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl---epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL---EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh---hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 233333222333 37888899999999999999999886432211 12334555555667889999999999999
Q ss_pred HHHh
Q 000361 408 FRGC 411 (1617)
Q Consensus 408 Y~~~ 411 (1617)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 133
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=60.54 E-value=27 Score=46.99 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHHHhhcCCC-CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000361 274 DQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1617)
Q Consensus 274 dd~~~Rl~At~llG~mfs~~~-~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~ 352 (1617)
|--+-|..|..++|.++..-. -.+-.+.++.+..+ ..|..|.||.++.+.++.+-..-+.....+.++..+..-++
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 444478888888888886533 22334455555554 57999999999999988766554554455678889999999
Q ss_pred CChhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000361 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 353 D~DekVR~aaV~ai~~la~-~~l~-~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~ 412 (1617)
|-.+-||.+|+.....+.. ..-. .+-..+..++-.-.-|+.+.||--.+.....+|...-
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~ 348 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG 348 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence 9999999999999877654 2222 3444566788888999999999999999999999763
No 134
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=59.42 E-value=2.1e+02 Score=38.96 Aligned_cols=139 Identities=21% Similarity=0.222 Sum_probs=102.7
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000361 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1617)
Q Consensus 261 ~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s-~p~~~~ 339 (1617)
..|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+....+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3467777776677789999999999998887643332 77788889999999999999998877766553321 1222 1
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhc----CCCCH-HHHHHHHHhhccCChhHHHHHH
Q 000361 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHAL----NSIPV-ETVKLVAERLRDKSVLVKRYTM 401 (1617)
Q Consensus 340 ~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l----~~V~~-elL~~laeR~rDKK~~VR~eAm 401 (1617)
..+....+..-+.|..+.||.++-.-+..+++..- -.++. .+|-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 23677888899999999999998888888776322 33333 3557788888999999887643
No 135
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.32 E-value=1.1e+02 Score=38.87 Aligned_cols=178 Identities=14% Similarity=0.248 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhcCCC-CCCChhH---HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCch---H
Q 000361 74 LLVATCICEITRITAPE-APYSDDV---LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 146 (1617)
Q Consensus 74 ~~vAcCLadIlRI~APd-aPy~d~~---LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~---~ 146 (1617)
-|+.-|+.-|+=++.-+ .||.+.. |..|+..+. .+|++|.|. +|+.|+++.. +-.+++-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~l--ir~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGAL--IRFVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHH--HHHS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHH--HHhccCCChhHHHH
Confidence 36777876666655444 6775532 333333322 357888775 5678999864 1123332211 4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhh
Q 000361 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKN---DTARRLAMNVIEQCAG 218 (1617)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~ip~---~lLd~IL~~l~~~~~---~~a~~lA~~vi~~~~d 218 (1617)
+-..+|-.|..+...+ -.....+...||+.+++-.. .+|+ .++..||+...=... .+.-+|-...|.+++.
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 4555555555554432 22455566678888888765 5665 334444432211111 1445677888888776
Q ss_pred hhH--H---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcch-hhhhhhhh
Q 000361 219 KLE--A---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPY 266 (1617)
Q Consensus 219 kL~--~---~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~ 266 (1617)
.+. . .|-.-|.-++.... .....++|+..|...+|. .|...+|+
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 552 1 12223344444431 122356788777777776 45555544
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.97 E-value=5.9e+02 Score=33.61 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhc
Q 000361 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 682 (1617)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~ 682 (1617)
..|.......+...+.+. ..-.-|-.++--.-+.||++=...+..+.++++|++..+.-.+++.|-.+++.-++..
T Consensus 19 ~~~~~~y~~il~~~kg~~--k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-- 94 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSP--KEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-- 94 (556)
T ss_dssp GGGHHHHHHHHHGGGS-H--HHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--
T ss_pred ccCHHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--
Confidence 345555444444443322 2223455777778888899988889999999998877666677777766655422222
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 000361 683 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 730 (1617)
Q Consensus 683 ~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~ 730 (1617)
+.+..+|-.+=....+.+....-++|+.+.+.+...++..|+..|.
T Consensus 95 --~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 95 --SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp --HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3466666666666666666555566655554443344455555554
No 137
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.44 E-value=4.5e+02 Score=32.51 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=57.8
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC-CCchhhc---HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC-h
Q 000361 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-A 340 (1617)
Q Consensus 266 ~Le~eL~sdd~~~Rl~At~llG~mfs~~~-~~~a~~y---~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~-~ 340 (1617)
....-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...-- .+..+||.... +
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF-KvFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF-KVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH-HHHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH-HHHHhCCCCChHH
Confidence 44555778999999999999999999864 2334444 88888889999999999999986554 45566775321 1
Q ss_pred --------HHHHHHHHhhhCCC
Q 000361 341 --------PQILTALCDRLLDF 354 (1617)
Q Consensus 341 --------~eii~~L~~rL~D~ 354 (1617)
.-++..|.+-..|.
T Consensus 292 ~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 292 VDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 23444555555665
No 138
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.78 E-value=6.8e+02 Score=33.98 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=103.6
Q ss_pred hhcc-hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCch-hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000361 254 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 331 (1617)
Q Consensus 254 ~~~P-~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a-~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL 331 (1617)
+++- +++-.|+|++|..++++|=..|-.|+-.+|-++-+|..+-- .-=+..-..-+.-..|.+.-||-.-.-..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4443 34557999999999999999999999999999988863311 111333444455566888888865555556666
Q ss_pred hcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH------------HHHH---HHHHhhccC
Q 000361 332 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETVK---LVAERLRDK 392 (1617)
Q Consensus 332 ~s~p~~----~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~------------elL~---~laeR~rDK 392 (1617)
-..|+. ...+.++..|..=|+| ..+|=..+|-++..++.......+. .++. .+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 555431 1123556677777776 5788888888888887433222211 1222 344554434
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 000361 393 SVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 393 K~~VR~eAm~~La~LY~~~ 411 (1617)
-.+.|..|-+.|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5689999999999988853
No 139
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.47 E-value=3.2e+02 Score=31.75 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cc
Q 000361 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE------NE 659 (1617)
Q Consensus 586 ~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~------~~ 659 (1617)
..+++.|=.-|..- | .+++.+++.+..-...+.......++++|..+-...|..| +..+.++..+.-. +.
T Consensus 19 ~~~L~~L~~l~~~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~ 94 (234)
T PF12530_consen 19 LPLLEALPSLACHK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSK 94 (234)
T ss_pred HHHHHHHHHHhccC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCC
Confidence 34444444333333 2 4455555443321111221223467899999999999999 4555554441111 11
Q ss_pred cchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHh-hcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCC
Q 000361 660 IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH 738 (1617)
Q Consensus 660 ~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~la-l~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~ 738 (1617)
......+-.++..-..+....|.....+...+..++ ....+..+-+|+.+|..+...+ ...+....+-|...| ....
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~ 172 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDY 172 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCcc
Confidence 111122222222222233333433345777777777 5677788889999999988643 333433455566555 2346
Q ss_pred CchHHHHHHHHHhhcccc
Q 000361 739 LPAVLQSLGCIAQTAMPV 756 (1617)
Q Consensus 739 l~t~L~sL~~Iaq~ap~v 756 (1617)
-|.++.+|.+++.+.|..
T Consensus 173 rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQG 190 (234)
T ss_pred chHHHHHHHHHHHHhccc
Confidence 788999999999987743
No 140
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=55.39 E-value=13 Score=49.15 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=37.8
Q ss_pred CcccCCeEEEecCCC----CceEEEEEEEecCCC--------CeeEEEccCCcceeeec
Q 000361 1316 EDLIGYRIKVWWPMD----KQFYEGTIKSYDPIK--------KKHVILYDDEDVEVLRL 1362 (1617)
Q Consensus 1316 ~~~vG~ri~v~Wp~D----~~~Y~G~v~~y~~~~--------~~H~v~YdDgd~E~l~l 1362 (1617)
+.-.+-++||||-+. .+|++|+|-+.-|.. .+..|+||.|+.+.+.=
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 444889999999864 789999999987755 46899999998776654
No 141
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=54.90 E-value=26 Score=34.96 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCcccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEc-cCCcceeeecc
Q 000361 1315 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 1363 (1617)
Q Consensus 1315 ~~~~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~Y-dDgd~E~l~l~ 1363 (1617)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 345588888888899999999999 6777788888988 99999987655
No 142
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.96 E-value=4.2e+02 Score=34.14 Aligned_cols=240 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhhhhhhccCC----chHHHHHHHHHHHHhhcCCC------hhhHHHHHHHHHHHHhcccccccHHH
Q 000361 120 FGRRVVILETLAKYRSCVVMLDLE----CDELVNEMYSTFFAVASDDH------PESVLSSMQTIMIVLLEESEDIQEDL 189 (1617)
Q Consensus 120 f~~~~~lLe~la~vks~vl~~DL~----~~~Li~~lF~~ff~~v~~~~------~~~V~~~m~~IL~~vI~Ese~ip~~l 189 (1617)
|+|.|.|+=.+-. ||++++.| +......---..+.++.+=| +-.....|..-+..+-+|-+.+...+
T Consensus 114 ypqlf~llLllvs---cvlg~k~p~~lqa~~r~~~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~ql 190 (533)
T KOG2032|consen 114 YPQLFSLLLLLVS---CVLGLKSPDSLQALSRLEDVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQL 190 (533)
T ss_pred hHHHHHHHHHHHH---HHhhccCcccHHHHHHHHhHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhc
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHH--hhcc--hhhhhhhh
Q 000361 190 LVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVY--RCSP--QILSGVVP 265 (1617)
Q Consensus 190 Ld~IL~~l~~~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~--~~~P--~lL~~ViP 265 (1617)
-+.-...+ -+-.+++.+=....-.|.....|+.++.... ..+..+.---.+.++- ...| .+|-+|+-
T Consensus 191 s~~~~h~~------g~trlqr~m~~~~~~~~~~il~q~~ss~ts~---~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~ 261 (533)
T KOG2032|consen 191 SDNDIHRV------GLTRLQRFMACVQDLEMGKILAQLLSSITSE---KENGRITDIAFFAELKRPKELDKTGLLGSVLL 261 (533)
T ss_pred ccCcccHH------HHHHHHHHHHhhCCccHHHHHhhcccccchh---cccchHHHHHHHHHHhCcccccccccHHHHHH
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChH---
Q 000361 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP--- 341 (1617)
Q Consensus 266 ~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~--- 341 (1617)
.+-......+...|..|.+.||.+.+.-.....+-++..-. -..|=.-|-..+|=.+.+++...++..--..+..+
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 342 QILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 342 eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
.|.--+...+-|-++++|.++.-.++.++.
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
No 143
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=53.64 E-value=29 Score=44.12 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.6
Q ss_pred cccccCCCCCCcccccCCCCCCCCC
Q 000361 1511 DEVDKMDSEEKPAEEVGSVPQDEKS 1535 (1617)
Q Consensus 1511 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1535 (1617)
++++..+|++. +.|-|-.||-.+.
T Consensus 292 ~e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 292 NEGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred ccccccccccc-cCCcccccccccc
Confidence 34455667777 5555555665553
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.74 E-value=1.4e+02 Score=39.04 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000361 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1617)
Q Consensus 274 dd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D 353 (1617)
-+..+..+|-+.+.+.|.. |..---..+++.|.=+-|-++.||++.++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566777777888888764 5555556778888888888888888888888877766654 35667777777666
Q ss_pred ChhHHHHHH
Q 000361 354 FDENVRKQV 362 (1617)
Q Consensus 354 ~DekVR~aa 362 (1617)
+||.+=+.+
T Consensus 107 tdd~~E~~~ 115 (556)
T PF05918_consen 107 TDDPVELDA 115 (556)
T ss_dssp ---HHHHHH
T ss_pred cccHHHHHH
Confidence 555444443
No 145
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.75 E-value=57 Score=36.53 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 341 ~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
+.-++.+.+...+++..||..|+..+.-+....+-+ |.+.+-+|.-..-|....||..|+..+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 345667777899999999999999997766544432 6677777888889999999999999999999987
No 146
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.59 E-value=1.9e+02 Score=39.21 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=59.2
Q ss_pred HhHHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHHhhcCCCCC-----CChhHHHHHHHHHHHhccCCCCC--CCCChh
Q 000361 50 EAMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPEAP-----YSDDVLKDIFQLIVGTFSGLKDT--GGPSFG 121 (1617)
Q Consensus 50 ~sl~~~~~~L-v~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaP-----y~d~~LkdIF~l~v~~f~~L~d~--~~p~f~ 121 (1617)
+++..++.+| +=..||.|.|+.+=-+++.|++-|.-=++|++- +..+-++.|=+|+.-+ ++ +++-|.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTILSNGTYT 402 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----cccccccchh
Confidence 3456677766 556899999999999999999877766665432 1223445555555443 22 455555
Q ss_pred hHHHHHHHHHh--hhhhhhhccCCchHHHHHHHHHHHH
Q 000361 122 RRVVILETLAK--YRSCVVMLDLECDELVNEMYSTFFA 157 (1617)
Q Consensus 122 ~~~~lLe~la~--vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1617)
--+-+|-.++. .-.++.+..++=-+.+..+|.+.-.
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 55555555542 2233333333323455555555433
No 147
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=47.69 E-value=1.3e+03 Score=34.89 Aligned_cols=157 Identities=10% Similarity=0.137 Sum_probs=80.5
Q ss_pred hHHhHHHHHHHhcc--hhhhcC----CCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChh
Q 000361 48 ILEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFG 121 (1617)
Q Consensus 48 ~~~sl~~~~~~Lv~--~~LL~H----kD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~ 121 (1617)
+.+++..+.++|.. ..=|.. .---++.+|-.|...+-||-- +-..||..+-.-|-..+-..+ -.
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl--------~W~~iW~~l~~hf~~vg~~~n--~~ 1152 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL--------VWSSIWHVLSDFFVTIGCSEN--LS 1152 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe--------ehHhHHHHHHHHHHHhcCCcc--hh
Confidence 45677777777743 333322 223356667777777777654 223556555555544332222 22
Q ss_pred hHHHHHHHHHhhhh-hhhhccCCc---hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHh
Q 000361 122 RRVVILETLAKYRS-CVVMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSA 196 (1617)
Q Consensus 122 ~~~~lLe~la~vks-~vl~~DL~~---~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~ip~~lLd~IL~~ 196 (1617)
-.+|.+.+|-.+-. |.-.-+|+. +..+..=|..++. ......|...+...+..+|... +.|-. =++.||.-
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~V 1228 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMV 1228 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHH
Confidence 46777776654311 111222321 2233344444443 3334456666666666666653 33433 35566655
Q ss_pred hcC---CCc----HHHHHHHHHHHHHhhh
Q 000361 197 LGR---NKN----DTARRLAMNVIEQCAG 218 (1617)
Q Consensus 197 l~~---~~~----~~a~~lA~~vi~~~~d 218 (1617)
|.. .+. ..||+....|+.....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 531 111 1678887777766554
No 148
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=47.58 E-value=45 Score=29.94 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=30.8
Q ss_pred cCCeEEEecCCCCceEEEEEEEecCCCC--eeEEEccCCc
Q 000361 1319 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED 1356 (1617)
Q Consensus 1319 vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~--~H~v~YdDgd 1356 (1617)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n 41 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWN 41 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTST
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCC
Confidence 899999999 899999999999988664 5677776443
No 149
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=47.18 E-value=1.2e+02 Score=34.19 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=71.5
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Cc-----------hhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000361 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1617)
Q Consensus 271 L~sdd~~~Rl~At~llG~mfs~~~~-------------~~-----------a~~y~~~w~~fL~R~~D~s~~VR~~~v~~ 326 (1617)
|...+..+|..|..++.-|+.+... +| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23344443333 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 327 ~~~iL~s~p~~----~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
+..++.+-|+. .....++..+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888887863 3456777888999999999999998888876643
No 150
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.16 E-value=8.2e+02 Score=32.36 Aligned_cols=229 Identities=21% Similarity=0.200 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC-
Q 000361 122 RRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR- 199 (1617)
Q Consensus 122 ~~~~lLe~la~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~- 199 (1617)
+-+..|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.||..+.+--..|...+-..++..+..
T Consensus 66 Ril~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 66 RILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444455444443 467777 5899999998887654 344567888888999888887777777777766655521
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChH
Q 000361 200 --NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLD 277 (1617)
Q Consensus 200 --~~~~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~ 277 (1617)
.+..+.+.=|..+ -.||.++ .+ +...+.-.++..+-+..|+ .+
T Consensus 141 ~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnDPS-----------------~E 185 (885)
T COG5218 141 LFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQNDPS-----------------DE 185 (885)
T ss_pred HhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcCcH-----------------HH
Confidence 1111222222111 1233332 11 1223344466555555553 56
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhH
Q 000361 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1617)
Q Consensus 278 ~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~Dek 357 (1617)
+|..|.- +++.. ++|+-.-|.|..|.+...|..+-+.+-.-+---.+.+....|. .+.--|.|-|.-
T Consensus 186 VRr~all----ni~vd--------nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~s 252 (885)
T COG5218 186 VRRLALL----NISVD--------NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFS 252 (885)
T ss_pred HHHHHHH----HeeeC--------CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-hhhhcchhhhhh
Confidence 7777642 22221 2467788999999999999887665432111000111111222 455568999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 358 VR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
||.|++.+|..-.....+ ..++ .|.+|+ ..+=|..|...+-.+|..
T Consensus 253 v~~a~~d~ia~~w~~~~d---~~lv-eLle~l---DvSr~sv~v~aik~~F~~ 298 (885)
T COG5218 253 VKGALVDAIASAWRIPED---LRLV-ELLEFL---DVSRRSVLVAAIKGVFEK 298 (885)
T ss_pred HHHHHHHHHHHHhccccc---ccHH-HHHHHH---hhhhHHHHHHHHHHHHhh
Confidence 999999998553333222 2222 223443 223344445555555654
No 151
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.39 E-value=9.4e+02 Score=32.86 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhhhhhHH---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHH
Q 000361 204 TARRLAMNVIEQCAGKLEA---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1617)
Q Consensus 204 ~a~~lA~~vi~~~~dkL~~---~i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl 280 (1617)
-|+-|-.++...+.+.-+. ++..|+.+.+... ...-.+.+-..|..|..+.|..++.++..|.--|.+..+.+|-
T Consensus 223 ~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRf 300 (865)
T KOG1078|consen 223 LAVCMLIRIASELLKENQQADSPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRF 300 (865)
T ss_pred hHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHH
Confidence 4555555555555555555 3334445554432 1112234555677777777777887887777777788888888
Q ss_pred HHHHHHHHhhcCCCCC----------------------------------------------------------------
Q 000361 281 KAVGLVGDLFAVPGSA---------------------------------------------------------------- 296 (1617)
Q Consensus 281 ~At~llG~mfs~~~~~---------------------------------------------------------------- 296 (1617)
.|+++|-++-..+...
T Consensus 301 aAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~s 380 (865)
T KOG1078|consen 301 AAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRS 380 (865)
T ss_pred HHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHH
Confidence 8888887776543110
Q ss_pred chhhcHHHHH---HHHhhhc--CCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000361 297 NNEQFHSVFS---EFLKRLT--DRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1617)
Q Consensus 297 ~a~~y~~~w~---~fL~R~~--D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1617)
+-..||.-|. .||++.- +-..+--..+|+++..|+..+|...+ -.+..||+.+-|-.-. .-++..+.-+..
T Consensus 381 Lc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe--~~L~~LCefIEDce~~--~i~~rILhlLG~ 456 (865)
T KOG1078|consen 381 LCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE--RGLEHLCEFIEDCEFT--QIAVRILHLLGK 456 (865)
T ss_pred HHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh--HHHHHHHHHHHhccch--HHHHHHHHHHhc
Confidence 1234555544 5665532 33344455677777777777775322 3456666666655432 223333333344
Q ss_pred hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCC
Q 000361 372 HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKD 440 (1617)
Q Consensus 372 ~~l~-~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd 440 (1617)
..+. ..|..-++.+..|+-==+..||..|...|+++=.. .......||+.+-+|.++.|
T Consensus 457 EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~----------~~~l~~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 457 EGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ----------DVVLLPSILVLLKRCLNDSD 516 (865)
T ss_pred cCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC----------CCCccccHHHHHHHHhcCch
Confidence 4443 34666778888888888889999999999987611 12345688999999987665
No 152
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=45.70 E-value=1.1e+02 Score=39.70 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH--HH----hhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH
Q 000361 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE--FL----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1617)
Q Consensus 273 sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~--fL----~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~ 346 (1617)
.-+..+|..++.-++..+.. +|+.|.. || .=..|.+..||...++-...+...+|...-..+..+-
T Consensus 286 Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eR 357 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVER 357 (740)
T ss_pred chhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 45678899999999887753 4444432 11 1257999999999999998888888876545566655
Q ss_pred HHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHhh
Q 000361 347 LCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1617)
Q Consensus 347 L~~r-----L~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~---VR~eAm~~La~LY~~~~ 412 (1617)
+..| ..|.|= ||..+++..|.+.. +..++..-+-.+.--|-|=++. +|.++...++++-....
T Consensus 358 Fk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 358 FKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5554 478888 99999999877543 3344444444444557787776 77788877777766544
No 153
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.69 E-value=1.2e+02 Score=36.76 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhhcchhhhh----hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000361 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~----ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~V 319 (1617)
+.-..|..|-.+.|+.|.+ ||.++-.+|+.-.-.+=..|+.++++||+.-+..+.+.-..+-...|.|..+-.-=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556677777777776554 889999999999999999999999999998765666777888889999988877888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------CCHHHHHHHHHhhccCC
Q 000361 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS------IPVETVKLVAERLRDKS 393 (1617)
Q Consensus 320 R~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~------V~~elL~~laeR~rDKK 393 (1617)
|...-++.-.. .+|-. ..-++..|...+.-+-.+||..++..+.... ..+.. ...++...+++-++||=
T Consensus 187 reda~kAL~aM-V~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAM-VNHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHH-HhccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 88777766542 33322 2357788888899999999998544431111 11111 12355678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000361 394 VLVKRYTMERLADIFRG 410 (1617)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1617)
+.+|..|=-.+..+..+
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996654444444443
No 154
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.40 E-value=1.5e+02 Score=38.34 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC---CCchhh--cHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---
Q 000361 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 337 (1617)
Q Consensus 266 ~Le~eL~sdd~~~Rl~At~llG~mfs~~~---~~~a~~--y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~--- 337 (1617)
.+-..+.+++...++.|+..+-+++|... .+.+-. -=+.+..||+| |..+.+|.+..=++.+|-.-....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33344668999999999999999999753 121111 13456778875 456777777666666655432211
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHh-hccCChhHHHHHHHHHHHHHHHhh
Q 000361 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAER-LRDKSVLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 338 ~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~----V~~elL~~laeR-~rDKK~~VR~eAm~~La~LY~~~~ 412 (1617)
-.....+..|...|..+++.||-+||-+++.+|-..... +.-..+..|..- ..+.+....+.++=+|.+|.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 001134567889999999999999999999998755331 222233323222 22333456666666777766541
Q ss_pred hhccCCCcchhccccchHHHhhhhccCCC
Q 000361 413 LRNFNGSINQNEFEWIPGKILRCLYDKDF 441 (1617)
Q Consensus 413 ~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~ 441 (1617)
+.+.....+.-|=..|+.+.|..|.
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 1223334556666666777666663
No 155
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=1.1e+03 Score=33.14 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=143.2
Q ss_pred hhhHHHHHHHHHHHHhccccccc---HHHHHHHHHhhcCCCcH---HHHHHHHHHHHHh--------------hhhhHHH
Q 000361 164 PESVLSSMQTIMIVLLEESEDIQ---EDLLVILLSALGRNKND---TARRLAMNVIEQC--------------AGKLEAG 223 (1617)
Q Consensus 164 ~~~V~~~m~~IL~~vI~Ese~ip---~~lLd~IL~~l~~~~~~---~a~~lA~~vi~~~--------------~dkL~~~ 223 (1617)
|.-++..+..++..||.. +-| +.+++.|...+...... .|-.+-.+|+.+. .+-+-|.
T Consensus 102 p~~iRvql~~~l~~Ii~~--D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKA--DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred chHHHHHHHHHHHHHHhc--CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 667788888888888876 444 78888887777433211 3333333444333 3445666
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-----------cchhhhhhhhhh--------cccccCCChHHHH----
Q 000361 224 IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPYL--------TGELLTDQLDTRL---- 280 (1617)
Q Consensus 224 i~q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViP~L--------e~eL~sdd~~~Rl---- 280 (1617)
|.++|+.++..++..+ .....+|..++.. +|+.+.+.+..+ =.|..+.|++.|.
T Consensus 180 il~~~~~ll~~~s~~s---~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 180 ILQIFNGLLSQESYQS---VELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHHHHhhccccchHH---HHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 7777777766543211 1233344443332 444444433221 1245555666664
Q ss_pred -----HHHHHHHHhhcCCCCC---------chhhc-----HHHHHHHHhhhc---C---CChhHHHHHHHHhHHHHhcC-
Q 000361 281 -----KAVGLVGDLFAVPGSA---------NNEQF-----HSVFSEFLKRLT---D---RIVAVRMSVLEHVKSCLLTD- 334 (1617)
Q Consensus 281 -----~At~llG~mfs~~~~~---------~a~~y-----~~~w~~fL~R~~---D---~s~~VR~~~v~~~~~iL~s~- 334 (1617)
=|.-.|-|+|.-=|+. |++-| +-+...||+=.. - .++.|=...+.+..+++...
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH
Confidence 4788889998653322 11111 222233332111 1 22222223333333332211
Q ss_pred ------CCCCChHHHH-----HHHHh-------hhCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChh
Q 000361 335 ------PSRADAPQIL-----TALCD-------RLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVL 395 (1617)
Q Consensus 335 ------p~~~~~~eii-----~~L~~-------rL~D~DekVR~aaV~ai~~la~-~~l~~V~~elL~~laeR~rDKK~~ 395 (1617)
|+ ..-|+ ..+|- -=.||+|=+|.- +.. ..+..-....+..+..-++-++..
T Consensus 337 twkll~PH---l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke 406 (1010)
T KOG1991|consen 337 TWKLLKPH---LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKE 406 (1010)
T ss_pred HHHHhhhH---HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchh
Confidence 21 01111 11110 115777778875 111 112222223344445555555455
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc------chhccccchHHHhhhhccCCCCchhHHHHhhccCCCCCCCH----HHHH
Q 000361 396 VKRYTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRV 465 (1617)
Q Consensus 396 VR~eAm~~La~LY~~~~~~~~~~~~------~~~~~~wIP~~IL~~~Y~nd~~~~lvE~vL~e~LlP~~~~~----~~R~ 465 (1617)
+=.-.|..+..++..|-........ +.-.++.|-+.|+. +.+=...+|..+..+++|.-.++ ..|+
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 5666777788888776433111111 11135666655543 22112478999999999875444 3444
Q ss_pred HHHHHHHhcCCHH
Q 000361 466 RHWVRIFSGFDRI 478 (1617)
Q Consensus 466 ~~ll~l~~~LD~~ 478 (1617)
--.++.|+..|-+
T Consensus 483 c~vl~~~~~~df~ 495 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFK 495 (1010)
T ss_pred HHHHHHHHhccCC
Confidence 4444566655543
No 156
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.82 E-value=13 Score=49.34 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=20.0
Q ss_pred CChhhHhHhHHHHHHHHHHhhhcc
Q 000361 842 SSSVDKAHLRLASAKAVLRLSRQW 865 (1617)
Q Consensus 842 tp~~~ksrLRLaAa~~lLKLAr~~ 865 (1617)
-|.+..--+|-.|.+.|+-|||..
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccCc
Confidence 366777789999999999999863
No 157
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=44.78 E-value=1.6e+02 Score=35.90 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=71.6
Q ss_pred HHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000361 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1617)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1617)
.|.-+.+.+|.+++|-||+| +.+.=-.+.+++-.+-..-+.. .-|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56677888999999999985 3333334444555444332222 34567888777 6899999988887654
Q ss_pred HhcCC--------------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000361 331 LLTDP--------------SRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1617)
Q Consensus 331 L~s~p--------------~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~ 368 (1617)
+-... -..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 012234577999999999999999997777644
No 158
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.51 E-value=5.8e+02 Score=29.62 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=49.4
Q ss_pred HHHHHHhhcchhhhhhhhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 248 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 248 Li~eL~~~~P~lL~~ViP~Le~eL-~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
-+.+|-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 344555556665555666666666 7899999999999999999443 456677999999988 3344444444
No 159
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=43.33 E-value=4.7e+02 Score=33.54 Aligned_cols=164 Identities=12% Similarity=0.152 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHhcccccccH----HHHHHHHHhhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--
Q 000361 165 ESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG-- 234 (1617)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~ip~----~lLd~IL~~l~~~~~~----~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~-- 234 (1617)
..-...|..|+.-+-+.+..|.. ++|..+|.-+...+.. -|.++-..+|.+.+++|..+.--.+.-++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 44566788888888888889988 4555556666554333 5666666777777777765543222222211
Q ss_pred CCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhhhc
Q 000361 235 DSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLT 313 (1617)
Q Consensus 235 ~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~-~~a~~y~~~w~~fL~R~~ 313 (1617)
+..+.......-..+.-+..+.|..=..||-. -+..+|.+.=+++++.+.+||..-.. .+...-|++-=+++.-+.
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~---~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~ 458 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQCIVNISP---LILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD 458 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchhHHHHHhh---HHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc
Confidence 11000011122334555555555443333222 13347777888899999999976432 233444566666677777
Q ss_pred CCChhHHHHHHHHhHHHH
Q 000361 314 DRIVAVRMSVLEHVKSCL 331 (1617)
Q Consensus 314 D~s~~VR~~~v~~~~~iL 331 (1617)
-.+..||..+|=|...++
T Consensus 459 S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 459 STSSTVRKTAVFCLVAMV 476 (516)
T ss_pred CchHHhhhhHHHhHHHHH
Confidence 778888888777765544
No 160
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=43.19 E-value=1.2e+03 Score=33.36 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=89.5
Q ss_pred ccCCC-hHHHHHHHHHHHHh---hcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH
Q 000361 271 LLTDQ-LDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1617)
Q Consensus 271 L~sdd-~~~Rl~At~llG~m---fs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~ 346 (1617)
|.+|. .-+|..-++-++.+ |+..+++ .-+..-.+.=.||++...|.++.+.+..+-.--.-+....=|+..
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ksN-----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKSN-----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhcccc-----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 33443 46777666666655 4544322 223333333468999999999999987532211112122346699
Q ss_pred HHhhhCCChhHHHHHHHHHHHHhhhhhc-CCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000361 347 LCDRLLDFDENVRKQVVAVICDVACHAL-NSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 347 L~~rL~D~DekVR~aaV~ai~~la~~~l-~~V-~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~ 411 (1617)
|..-|.|.+|-|=..|..++.-+....+ ..- =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999998887777766555332 211 2256778888888888889999999998888864
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.70 E-value=96 Score=41.00 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000361 246 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1617)
Q Consensus 246 h~Li~eL~~~------~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~V 319 (1617)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+-.|. .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000361 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1617)
Q Consensus 320 R~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la 370 (1617)
|...|+. |-.-.++.-+.+|+..|..-|.-.|--+|-..|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 162
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.91 E-value=16 Score=48.49 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHhhc
Q 000361 143 ECDELVNEMYSTFFAVAS 160 (1617)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~ 160 (1617)
+.+.++..+|+.--..+-
T Consensus 123 e~~~v~e~~~~~~~~~~q 140 (1516)
T KOG1832|consen 123 EGDHVLETGREMGQTDVQ 140 (1516)
T ss_pred ccchHHHHHHHHhhhccC
Confidence 456677777766544443
No 163
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=40.34 E-value=9.1e+02 Score=30.95 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh
Q 000361 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY 133 (1617)
Q Consensus 67 HkD~~Vr~~vAcCLadIlRI~APd-aPy~d~~L---kdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~v 133 (1617)
....++..|+-.-|.|+++- .|. +++--+.. .++|.-|+..|. ..+.+-....+++|..+...
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhc
Confidence 45677999999999999997 222 11111111 456777776543 34555566667777776544
No 164
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=1.2e+03 Score=32.54 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHHHhhcc--hhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCC---CCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000361 248 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1617)
Q Consensus 248 Li~eL~~~~P--~lL~~-ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~---~~~~a~~y~~~w~~fL~R~~D~s~~VR~ 321 (1617)
|..-|-+-+| +.+-. +.+++-.++++.--.+|..|.-+++..=+.. ..++.+.+..+.+++++ |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 3344445577 44433 4455556677888899999999999654221 23677888888888775 89999999
Q ss_pred HHHHHhHHHHhcCCCC-----CChHHHHHHHHhhhCCChhHHHHH
Q 000361 322 SVLEHVKSCLLTDPSR-----ADAPQILTALCDRLLDFDENVRKQ 361 (1617)
Q Consensus 322 ~~v~~~~~iL~s~p~~-----~~~~eii~~L~~rL~D~DekVR~a 361 (1617)
+.+-+...++.+.+.. ...+.+++.|..-.++++-.+=..
T Consensus 522 eAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9999888777766532 112344444444444444443333
No 165
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.15 E-value=1.2e+02 Score=40.28 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH-HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000361 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV-LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 278 ~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~-v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~De 356 (1617)
.|=+|+-+---||+..+ ...++.++.+ .|++|-+|..= ...+-...-+. ...-|-.-|.--..|.++
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nD 569 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVND 569 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccch
Confidence 46666666555665543 2233444433 47788888763 33322222211 112334455555778888
Q ss_pred HHHHHHHHHHHHhhhhhcCCC
Q 000361 357 NVRKQVVAVICDVACHALNSI 377 (1617)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V 377 (1617)
.||.+||.+|+-+.+..++.+
T Consensus 570 DVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHHHHHHHheeeEecChhhc
Confidence 888888888877766665544
No 166
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.81 E-value=80 Score=41.31 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=49.5
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCHHHH
Q 000361 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVETV 382 (1617)
Q Consensus 320 R~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~V~~elL 382 (1617)
=..+|+||-.++...|+......|+.++-..+.|+..-||...|++|..+.... ...++..++
T Consensus 302 ~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~V 365 (704)
T KOG2153|consen 302 AQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIV 365 (704)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHH
Confidence 346888999999999887777889999999999999999999999998876533 334443333
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.49 E-value=1.3e+02 Score=35.53 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000361 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1617)
Q Consensus 273 sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~ 352 (1617)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......+..-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554321111111122234566778899999987777765432221111222233445555433
Q ss_pred C--ChhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000361 353 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1617)
Q Consensus 353 D--~DekVR~aaV~ai~~la~~~-l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~L 407 (1617)
. .|..|..++.+++..++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 36788888888888876432 1111111222222222223456777777766655
No 168
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.22 E-value=3.3e+02 Score=33.62 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=60.6
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Cchh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000361 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1617)
Q Consensus 270 eL~sdd~~~Rl~At~llG~mfs~~~-~--~~a~--~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~ei- 343 (1617)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|...+=+....|.+++.. ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999998888888742 1122
Q ss_pred ----HHHHHhhhCCChhHHHHHH
Q 000361 344 ----LTALCDRLLDFDENVRKQV 362 (1617)
Q Consensus 344 ----i~~L~~rL~D~DekVR~aa 362 (1617)
+..|.+.|...+..||..+
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkr 229 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKR 229 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHH
Confidence 3578888888666666553
No 169
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=2.1e+02 Score=34.84 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=85.5
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 000361 275 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 342 (1617)
Q Consensus 275 d~~~Rl~---At~llG~mfs~~-~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~--------~e 342 (1617)
|+..|-. .|..|-|+|... |..++..|....+.=|. .| +..|.+..++.++-|+.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLi--ad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLI--AD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhccc--CC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4444544 788899999765 56677777666664443 33 6778888888887766543 32222 25
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 343 ILTALCDRLLDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 343 ii~~L~~rL~D~DekVR~aaV~ai~~la~~--~l~~V-~~e-----lL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
|.+.+.+++.-.|+.|-.+|++.|..++.+ .++.+ +.+ -+..++.|+-| -+|-...+.+-++|..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 667888899999999999999999998863 23322 222 34566777744 4565566666666664
No 170
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=38.05 E-value=8e+02 Score=33.95 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=97.2
Q ss_pred HccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCch--------hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHH
Q 000361 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPA--------SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEI 83 (1617)
Q Consensus 12 ~g~kL~~~~~s~~eLlkrL~~l~~~Ls~~dQ~~~~--------~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadI 83 (1617)
+++++.+.-+++.+.-+++= ... .|.++. .+=++..++...|.+.. =.-.|.++.-..|.||++-
T Consensus 44 V~~~IisldL~v~~Vy~~vW-----~~~-~~~~pM~v~YR~~Gl~geAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~~ 116 (802)
T PF13764_consen 44 VNNKIISLDLPVRDVYEKVW-----KPN-NQNPPMRVVYRMRGLDGEATEEFVESLEDDS-EEEEDPEQEFKIASVLAEC 116 (802)
T ss_pred ecCeeecCCCcHHHHHHHHh-----ccc-CCCCCeEEEEeecCCCCccchhhHhhccCcc-ccccCHHHHHHHHHHhhcC
Confidence 45566666677777766664 222 344332 23356677788776542 1224666666666665431
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHhhhhhh-hhccCCchHHHHHHHHHHHHhhc
Q 000361 84 TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDT--GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVAS 160 (1617)
Q Consensus 84 lRI~APdaPy~d~~LkdIF~l~v~~f~~L~d~--~~p~f~~~~~lLe~la~vks~v-l~~DL~~~~Li~~lF~~ff~~v~ 160 (1617)
.-|..++.+ +..+.+. +......-+.||....+|+.+- .++.+.+-..+...++.+|..-.
T Consensus 117 ------------gGL~~ll~~----l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~ 180 (802)
T PF13764_consen 117 ------------GGLEVLLSR----LDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQ 180 (802)
T ss_pred ------------CCHHHHHHH----HHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcc
Confidence 122222222 2222222 2345566678888888888777 55667777788888888887544
Q ss_pred CCChhhHHHHHHHHHHHHhccccc--c---------------cHHHHHHHHHhhcC
Q 000361 161 DDHPESVLSSMQTIMIVLLEESED--I---------------QEDLLVILLSALGR 199 (1617)
Q Consensus 161 ~~~~~~V~~~m~~IL~~vI~Ese~--i---------------p~~lLd~IL~~l~~ 199 (1617)
+.....+...+..||..++.|... + ..+.++.+|+++..
T Consensus 181 ~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s 236 (802)
T PF13764_consen 181 NSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNS 236 (802)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcC
Confidence 334456666677777777777543 2 45668888888753
No 171
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=66 Score=44.20 Aligned_cols=37 Identities=5% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHHHHhhccccccccccCcchHHHHHHHHHHHHHHh
Q 000361 1023 ISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLS 1059 (1617)
Q Consensus 1023 y~la~rIKq~rDa~d~~~S~nlY~LcDLAq~IIk~~~ 1059 (1617)
.+|+.++-.+..-+.-.++.+=|+|-=|+|-|+++-.
T Consensus 1318 e~LLseLLk~T~Lfe~PNaR~EHilLFLaqTV~RQTr 1354 (3015)
T KOG0943|consen 1318 EDLLSELLKATNLFELPNARGEHILLFLAQTVARQTR 1354 (3015)
T ss_pred HHHHHHHHhhccceeccCCCCceehhHHHHHHHHHHH
Confidence 3344443333333333445666677777777777644
No 172
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=37.93 E-value=1.5e+02 Score=36.25 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000361 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1617)
Q Consensus 319 VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL-~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR 397 (1617)
=|+.+++....+ |.......|+++|...+ .+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235668888888776 5699999999999997743333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000361 398 RYTMERLADIFR 409 (1617)
Q Consensus 398 ~eAm~~La~LY~ 409 (1617)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 173
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=37.23 E-value=6.5e+02 Score=34.79 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHhHHHHhcCC----CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000361 314 DRIVAVRMSVLEHVKSCLLTDP----SRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1617)
Q Consensus 314 D~s~~VR~~~v~~~~~iL~s~p----~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la 370 (1617)
++.|.+|..|..+...++.... .+....++++++.....|.|..||.++-.++..+.
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 3677777776666666665443 23344577788888888999999998888876644
No 174
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=36.27 E-value=6.1e+02 Score=35.08 Aligned_cols=195 Identities=18% Similarity=0.214 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCc--hHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 000361 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLEC--DELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1617)
Q Consensus 98 LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~--~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL 175 (1617)
|..-|.+...-|.+-+|...|.|.-.-+.|+- -|+|+-+.. ..+..+ .-+-+++......+|-
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~------Sv~~~~i~~~~~l~~LR---------~~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ------SVLLERIGPRAILYVLR---------KHNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh------hHhhccCCchHHHHHHH---------HccCcHHHHHhhccch
Confidence 44455555556666666666666555555442 122333221 111111 1123455555566666
Q ss_pred HHHhcccccccHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHH---HhhcCCCCCCCCcchHHHH
Q 000361 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLV---SSMSGDSRPGHSHIDYHEV 248 (1617)
Q Consensus 176 ~~vI~Ese~ip~~lLd~IL~~l~~~~~~----~a~~lA~~vi~~~~dkL~~~i~q~f~---~~l~~~~~~~~~~~~~h~L 248 (1617)
-.|.+-.+++..-+|..++-++...++. +-+++-..++..|.-+.-+. ||+. ++...+ ++
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~-----------d~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD-----------DE 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-----------hH
Confidence 6666666789999999888777554332 34555555555555443333 4543 111111 11
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCCCh--HHHH-----------HHHHHHHHhhcCCCCCc------------hhhcHH
Q 000361 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DTRL-----------KAVGLVGDLFAVPGSAN------------NEQFHS 303 (1617)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~eL~sdd~--~~Rl-----------~At~llG~mfs~~~~~~------------a~~y~~ 303 (1617)
+++...|..|-..|++|+. .+|+ +..+.|.+||--||-.+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 4555666666666766655 4444 44678999999887433 124778
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHH
Q 000361 304 VFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1617)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~v~~~~~ 329 (1617)
+|+--++-|.|.+-.+|..++++...
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~~ 1264 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLDM 1264 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 89999999999999999999988753
No 175
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=35.71 E-value=1.6e+03 Score=32.41 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHhhhCCChh
Q 000361 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 278 ~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~-~~~~eii~~L~~rL~D~De 356 (1617)
.+.++.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+|+....-.+.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 33555555555554 34568888888888878877766666667777655331 2345677766678889999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.||..|++-+..+....+..-..+-...+-+.+.++-+.|-+.|...|++....
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 999988888877765444322211122233455566555555555555554444
No 176
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.96 E-value=1.2e+02 Score=37.93 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000361 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1617)
Q Consensus 263 ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~-w~~fL~R~~D~s~---~VR~~~v~~~~~iL~s~p~~- 337 (1617)
.++.+..-|.+++-.+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-.-..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 33444445667789999999999999998763 22222111 2245566665543 34888888888888752111
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000361 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1617)
Q Consensus 338 ~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~ 376 (1617)
..-.-++.++....-++||+.|..+++.+|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887664
No 177
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.73 E-value=2.8e+02 Score=34.05 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-----chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC
Q 000361 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1617)
Q Consensus 264 iP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~-----~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~-p~~ 337 (1617)
+|+|...|-++|.+.-+.||--+-+++|...+. +..---+-|.+|+. ++--.|+++-..-.++| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000361 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 385 (1617)
Q Consensus 338 ~~~~-------eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~---------------------~V~~elL~----~l 385 (1617)
.-.+ .-+..|...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000361 386 AERLRDKSV----LVKRYTMERLADI 407 (1617)
Q Consensus 386 aeR~rDKK~----~VR~eAm~~La~L 407 (1617)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 178
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.48 E-value=7.6e+02 Score=30.92 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 000361 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1617)
Q Consensus 509 ~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~klLk~~id~~t~~~t~~~a~kELlkkL~~~~~~~e~ 588 (1617)
+.+++....++.+.|-.+...| ..|=++.+..|.+--=.-+|++|.. ++.+..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-ChhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000361 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1617)
Q Consensus 589 l~~Ll~R~S~l-i~-Nks~V~~LL~~v------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 642 (1617)
+..+..+..+- +| |+.|+..|++.+ ..-..+...+....|.++|..+++.++..
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchhhHHHHHHHhhcchHhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000361 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1617)
Q Consensus 643 Fk~~~~~Li~lL~~-------~~~~~~~~aLkiLak~~k~~~e~~~~~~s-----~l~~~L~~lal-------~Gtp~qA 703 (1617)
...-+...+..+.. .+...++++|..+..++-.......+... .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000361 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1617)
Q Consensus 704 KyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~ 747 (1617)
=.|++.+....+-=....+..++..++.+|.......+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 179
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=6.5e+02 Score=33.17 Aligned_cols=123 Identities=8% Similarity=0.143 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC------chhHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 000361 399 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 472 (1617)
Q Consensus 399 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~------~~lvE~vL~e~LlP~~~~~~~R~~~ll~l~ 472 (1617)
+|--.+..+|+.+..- .+ -..++.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 4556667777765321 01 12234445544332 2268888664 5567777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHhhccHH
Q 000361 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSR--SFAEPAKAEENFLILDQLKDAN 550 (1617)
Q Consensus 473 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~--~fPDp~Ka~~~L~kf~klnD~R 550 (1617)
..+++..-|-...+ +-+-.+|..||..|. +.+...-|.-....+.. +-||.+++.=.+-.++..+||+
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655544432 447778999998763 33343334433344443 3366666533333334456654
No 180
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=33.65 E-value=41 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.6
Q ss_pred cccCCeEEEecCCCCceEEEEEEEecCCCCeeEEEc
Q 000361 1317 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1352 (1617)
Q Consensus 1317 ~~vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~Y 1352 (1617)
.=||.+|.+-|++|..||..+|....+-++.-.|.+
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 449999999999999999999999999766555554
No 181
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.99 E-value=76 Score=40.83 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.8
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHH-HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000361 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL-TALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1617)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii-~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V 377 (1617)
.+|+++-.|..=+-...-...-. .+ .-++ .-|.--..|.++.||.|||-+++-+.|.....+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GT-gn---~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGT-GN---LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcC-Cc---chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 36888888876443333222211 11 1244 444455899999999999999988877766654
No 182
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=32.92 E-value=1.8e+02 Score=34.00 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCCchhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000361 274 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 343 (1617)
Q Consensus 274 dd~~~Rl~At~llG~mfs~~-~~~~a~~y~~-~w~~fL~R~~D~----s~~VR~~~v~~~~~iL~---s~p-~~~~~~ei 343 (1617)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4445556666 344444444443 68899999888876422 223 22333456
Q ss_pred HHHHHhhhC-C-ChhHHHHHHHHHHHHhh
Q 000361 344 LTALCDRLL-D-FDENVRKQVVAVICDVA 370 (1617)
Q Consensus 344 i~~L~~rL~-D-~DekVR~aaV~ai~~la 370 (1617)
+..+..-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 666666332 2 46666666677887776
No 183
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.00 E-value=4.6e+02 Score=35.87 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=103.3
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchhhHHHHHH
Q 000361 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 670 (1617)
Q Consensus 593 l~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~~~~Li~lL~~~~~~~~~~aLkiLa 670 (1617)
+-|++-+.+.--.||.|+..+..- +-...++-+++-|..||+.+|.- ++ +.+...+.+|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777788888776421 11124466788899999999853 22 22332222222111124467888888
Q ss_pred HhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc-------hHHHHHHHHHHhhhhc--C-CCc
Q 000361 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK-------SLSVLYKRLVDMLEEK--T-HLP 740 (1617)
Q Consensus 671 k~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~-------~~~~L~~~L~~~L~~~--~-~l~ 740 (1617)
++.+.++..-+..--...+.|..+=.+-+.+-.-++.-|++.+....... +-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 88887654322111234667888777877777778888887776543210 1123444444444311 1 223
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhccccc
Q 000361 741 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 778 (1617)
Q Consensus 741 t~L~s---L~~Iaq~ap~vfe~~~~eI~~fiik~IL~~~~~ 778 (1617)
++-.. |..++--.|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 33233 333333358888876554455567888877654
No 184
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=31.58 E-value=83 Score=33.58 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=43.1
Q ss_pred CeEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeeecccceEEEecCCCCCCcccc
Q 000361 1321 YRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1381 (1617)
Q Consensus 1321 ~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdDgd~E~l~l~~e~~~~~~~~~~~~~~~~ 1381 (1617)
..|...| +..||.|++.+.+....+-.|+++||. ..+.++-+..++-.-.+..+.+
T Consensus 14 ~avW~~~--~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 14 NAVWAGY--NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred cceeecC--CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 3445555 789999999999887778999999999 4455666788887777766555
No 185
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.22 E-value=1e+03 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.9
Q ss_pred HHHHHHHhhccCC--hhHHHHHHHHHHHHHHHhh
Q 000361 381 TVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 381 lL~~laeR~rDKK--~~VR~eAm~~La~LY~~~~ 412 (1617)
.+-.|.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4556778888887 6799999999998766654
No 186
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=3.6e+02 Score=33.31 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=92.6
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhc--HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 000361 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1617)
Q Consensus 264 iP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y--~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~ 341 (1617)
+|.--....+-+.+.|..|..-|-.+.-... -|... -.-|.-.|+=.++.++.||.....-++.|..|||.- ..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe 160 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDID--NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QE 160 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 4555555667788889999998876654432 22211 235888888889999999999999999999999842 12
Q ss_pred HHHH--H----HHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000361 342 QILT--A----LCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1617)
Q Consensus 342 eii~--~----L~~rL~D~DekVR~aaV~ai~~la~~~l~~------V-~~elL~~laeR~rDKK~~VR~eAm~~La~LY 408 (1617)
.+++ + +..--.|.+..||..|.-||+.+....... + ...+|..+.++= +.....++.|+..++.|-
T Consensus 161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHH
Confidence 2331 1 122237999999999999998876533222 1 223444443331 134566666777777666
Q ss_pred HHh
Q 000361 409 RGC 411 (1617)
Q Consensus 409 ~~~ 411 (1617)
...
T Consensus 240 ~~~ 242 (342)
T KOG2160|consen 240 QED 242 (342)
T ss_pred Hhh
Confidence 653
No 187
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.47 E-value=1.3e+02 Score=32.46 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchhhHHHHHHHhhcc
Q 000361 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1617)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 675 (1617)
+..+..|.+++.. +|....-.|+.||..+.+.|...|...+ ++|++++.. .++.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q ss_pred hHhhhhcccchHHHHHHHHhhcC
Q 000361 676 IREQLAATSSSVDLLLERLCLEG 698 (1617)
Q Consensus 676 ~~e~~~~~~s~l~~~L~~lal~G 698 (1617)
++.... -..+...-..+-..|
T Consensus 112 f~~~~~--l~~i~~~y~~L~~~G 132 (144)
T cd03568 112 FKNDPS--LSLMSDLYKKLKNEG 132 (144)
T ss_pred hCCCcc--cHHHHHHHHHHHHcC
No 188
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=29.92 E-value=1.2e+03 Score=30.80 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH-hc------------CCCc--hHHHHHHHHHhhhccccChhHHHHHHHHHHhhccc
Q 000361 555 LMNLLDSNTSFDQAFTGRDDLLKI-LG------------AKHR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSS 619 (1617)
Q Consensus 555 Lk~~id~~t~~~t~~~a~kELlkk-L~------------~~~~--~~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~ 619 (1617)
+.+|+...-+...-..+..++|.- |. .+|. ..|.+..++.-.---..=..+|+--...+.+
T Consensus 65 it~aIRET~siE~YaAaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~r---- 140 (851)
T KOG3723|consen 65 ITTAIRETESIEKYAAALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHR---- 140 (851)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhc----
Q ss_pred chhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCC
Q 000361 620 ANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 699 (1617)
Q Consensus 620 ~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gt 699 (1617)
++..+..--.+.|..-+.....++.+|.+..|+-+-..|. +.|++|+......++-+.+.-..|...| ..
T Consensus 141 gn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~----~LLrvlS~Vye~~P~~i~PhlP~l~~lL------~q 210 (851)
T KOG3723|consen 141 GNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNT----MLLRVLSAVYEKQPQPINPHLPELLALL------SQ 210 (851)
T ss_pred cChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccch----HHHHHHHHHHhcCCCccCcccHHHHHHh------cC
Q ss_pred hH-HHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccccccchHHHHHHHH
Q 000361 700 RR-QAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 769 (1617)
Q Consensus 700 p~-qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~ap~vfe~~~~eI~~fii 769 (1617)
+. +..+++++|..+-..+....++..+-.|+-+|.+.++..-.++-|-.||++.|.....+.+.+.....
T Consensus 211 ~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~ 281 (851)
T KOG3723|consen 211 LEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGE 281 (851)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHH
No 189
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=29.83 E-value=2e+02 Score=38.19 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=96.5
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000361 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1617)
Q Consensus 256 ~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p 335 (1617)
.++.-..++|.|-.-+...|..+|+.-.+-+-+.+..-. =-.-...+|-.|..=|+|.++.+|..-|++...+.---.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788888888999999999887766655443211 112345688889999999999999999988765443222
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000361 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 336 ~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR-~rDKK~~VR~eAm~~La 405 (1617)
.+..-.|++++|.+.-.|.+-.+|..++..++.++...-..+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 22345689999998888999999999877777766542111111122111223 55555555555554443
No 190
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.01 E-value=1.9e+02 Score=35.29 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh--------hcHHHHHHHHhhhcCCCh--------
Q 000361 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV-------- 317 (1617)
Q Consensus 254 ~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~--------~y~~~w~~fL~R~~D~s~-------- 317 (1617)
.++=.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++ .++.+=+-.--|..+...
T Consensus 48 ~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~ 127 (330)
T PF11707_consen 48 ELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSK 127 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccC
Q ss_pred -hHHHHHHHHhHHHHhcCCC---------CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 000361 318 -AVRMSVLEHVKSCLLTDPS---------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1617)
Q Consensus 318 -~VR~~~v~~~~~iL~s~p~---------~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~lae 387 (1617)
.||..+|+++-.+|...+. +....-++++|.. |+.+.|+.- |..+.+
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~ 184 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKD 184 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHH
Q ss_pred hhccCChhHHH---------HHHHHHHHHHH
Q 000361 388 RLRDKSVLVKR---------YTMERLADIFR 409 (1617)
Q Consensus 388 R~rDKK~~VR~---------eAm~~La~LY~ 409 (1617)
++-.-. .|.+ .++..|+.+|.
T Consensus 185 ~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 185 KVLKDS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HhccCC-CCChhhhhhhcCHHHHHHHHHHhc
No 191
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.98 E-value=7.6e+02 Score=30.83 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=106.6
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000361 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1617)
Q Consensus 261 ~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~--~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~ 338 (1617)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=+.|-++.|.++..-+... |.+.. .
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888888999999999999999997654421 23678888899999999999999998887766654 33221 1
Q ss_pred ChHHHH-----HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000361 339 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1617)
Q Consensus 339 ~~~eii-----~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~---~elL~~laeR~rDKK~~-VR~eAm~~La~LY~ 409 (1617)
-..+|+ ..+-+.|.|+--..=++.|..|..++.+.+..++ .-+|+-|...+|=+.-. +...|...|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223443 4667777888888888999999888888887653 34666666666655544 78888777766644
Q ss_pred H
Q 000361 410 G 410 (1617)
Q Consensus 410 ~ 410 (1617)
.
T Consensus 364 s 364 (550)
T KOG4224|consen 364 S 364 (550)
T ss_pred h
Confidence 3
No 192
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=28.57 E-value=1.9e+03 Score=31.04 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=67.0
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000361 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1617)
Q Consensus 265 P~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii 344 (1617)
|.+.+|-.-++.+.|.+..+-=...+-. ..++.--.+|+-.-.|..|+.+.||...+.....||..... .....|+
T Consensus 437 s~~~~e~e~dn~~~~s~s~e~qk~~k~~---~~v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl 512 (1529)
T KOG0413|consen 437 SDSDEENEGDNEENVSKSKEEQKKEKKA---KEVKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSIL 512 (1529)
T ss_pred CchHhhhcccchhhhhhHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHH
Confidence 3334444445555554443322222221 23344457888888999999999999999999888875533 3456899
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHH
Q 000361 345 TALCDRLLDFDENVRKQVVAVICD 368 (1617)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~ 368 (1617)
.++..--+|+---||.+++-++..
T Consensus 513 ~~~inS~~d~~fs~ves~~~~~~~ 536 (1529)
T KOG0413|consen 513 CATINSEMDEKFSAVESLEDLNVS 536 (1529)
T ss_pred HHhcCCccccchhHHHhchhhhhc
Confidence 999988999988888877766643
No 193
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=28.55 E-value=1.2e+03 Score=28.83 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=89.9
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCC------chhh
Q 000361 229 VSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQ 300 (1617)
Q Consensus 229 ~~~l~~~~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~-~~~------~a~~ 300 (1617)
..++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +.. +...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 356677644333333578888888876 23344556666665 48999999999998753 222 3456
Q ss_pred c-HHHHHHHHhhhcCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000361 301 F-HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1617)
Q Consensus 301 y-~~~w~~fL~R~~D~s~~VR~~~v-------~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~ 372 (1617)
| |++....+.-..+.+..+=...+ +.+..+++.++ .+.-+.+-..-+.=.|=..|...+.++-..
T Consensus 122 ~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~ 194 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTR 194 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhc
Confidence 7 88888888777765543322211 01111111111 111233344445555555555555554433
Q ss_pred hcCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 373 ALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 373 ~l~~V~~-------elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
+-..+.. ..+......+.-.+.-.|+.++..||.|--.
T Consensus 195 hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 195 HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 2222211 2344566667777888888888888888754
No 194
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.37 E-value=90 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000361 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1617)
Q Consensus 342 eii~~L~~rL~D~DekVR~aaV~ai~~la 370 (1617)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998765
No 195
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.12 E-value=4.4e+02 Score=29.57 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHHHh---cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000361 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1617)
Q Consensus 303 ~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~---s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1617)
..|...|.-+.+.+..||...++.+.-++. .||. +.+..|.-..-|++..||..|.+...++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 357788888899999999999999998886 4553 78899999999999999999888887775433
No 196
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=27.55 E-value=1.4e+02 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000361 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1617)
Q Consensus 355 DekVR~aaV~ai~~la~~~l~~V~~---elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~ 412 (1617)
+...|.++|-.+|.+....+..||. ++|..|+....| ...||+.+=+.|++.++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3456889999999999998999987 567889999997 78999999999999999874
No 197
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=27.45 E-value=3.6e+02 Score=35.77 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=103.5
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcC---CCCCchhhcHHHHH---HHHhhhcCCChhHHHHHHHHhHH------HHhcC
Q 000361 267 LTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFLKRLTDRIVAVRMSVLEHVKS------CLLTD 334 (1617)
Q Consensus 267 Le~eL~sdd~~~Rl~At~llG~mfs~---~~~~~a~~y~~~w~---~fL~R~~D~s~~VR~~~v~~~~~------iL~s~ 334 (1617)
...+|.+-.+..|..+.+-.--|--. .+....++.-.++. .++.= -=++..+|.+|+.+.+. +|.+-
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35667777888887766533211110 01222333333332 22211 12467788888877654 45555
Q ss_pred CCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH-----HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000361 335 PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-----ETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1617)
Q Consensus 335 p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~-----elL~~laeR~rDKK~~VR~eAm~~La~LY~ 409 (1617)
+.+ .++..-|..-|+||+-.|-..+.-+||-+.. .|...-. ..+..|..-+.|+-+.+|+.+...| |+
T Consensus 415 ~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r~ 487 (678)
T KOG1293|consen 415 LKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---RH 487 (678)
T ss_pred Ccc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---HH
Confidence 544 3688888889999999999999999998754 2222222 2356788999999999998777665 44
Q ss_pred HhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHH
Q 000361 410 GCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1617)
Q Consensus 410 ~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lvE~v 449 (1617)
..+.. +...-..-+.-||...+.+ |+||++....|+.
T Consensus 488 l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 488 LMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 33321 0001113467889888876 5888764444544
No 198
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.80 E-value=5e+02 Score=27.41 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.5
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000361 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1617)
Q Consensus 329 ~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~-----~V~~elL~~laeR~rDK---K~~VR~eA 400 (1617)
+++...+ ....+.+.+|.+||...+..|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||+.+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999988777654322 22446666666666654 46899999
Q ss_pred HHHHHHHHHHh
Q 000361 401 MERLADIFRGC 411 (1617)
Q Consensus 401 m~~La~LY~~~ 411 (1617)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877766554
No 199
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=26.45 E-value=1.6e+02 Score=25.67 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=31.0
Q ss_pred cCCeEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000361 1319 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1360 (1617)
Q Consensus 1319 vG~ri~v~Wp~D~~~Y~G~v~~y~~~~~~H~v~YdDgd~E~l 1360 (1617)
+|++|+|.. ....|.|.+...|+. +.=.|..+||..+.+
T Consensus 2 lG~~V~v~~--~~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVET--GDGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEE--TSCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEE--CCeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 699999999 345679999999876 777888888855544
No 200
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=25.93 E-value=4.3e+02 Score=32.25 Aligned_cols=161 Identities=11% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC----------CChhh-----HHHHHHHHHHHHhcccc-------cccHHHHHHHHHhhcCCCcH--
Q 000361 148 VNEMYSTFFAVASD----------DHPES-----VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGRNKND-- 203 (1617)
Q Consensus 148 i~~lF~~ff~~v~~----------~~~~~-----V~~~m~~IL~~vI~Ese-------~ip~~lLd~IL~~l~~~~~~-- 203 (1617)
+..+++.+.+.++. .+|.. |...++.++...|+-++ .+=+.+++.+|.-...+...
T Consensus 9 ~l~lY~~~s~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r 88 (319)
T PF08767_consen 9 MLNLYRAYSQIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAR 88 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHH-------HhhcCC-CCCCCCcchHHHHHHHHHhhcchhhh--------hhhh
Q 000361 204 --TARRLAMNVIEQCAGKLEAGIKQFLV-------SSMSGD-SRPGHSHIDYHEVIYDVYRCSPQILS--------GVVP 265 (1617)
Q Consensus 204 --~a~~lA~~vi~~~~dkL~~~i~q~f~-------~~l~~~-~~~~~~~~~~h~Li~eL~~~~P~lL~--------~ViP 265 (1617)
..-.+...||++-.+.+.+.+.+.+. +++.++ ....+-....+.++..+.+.||..|. .++-
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhh
Q 000361 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL 312 (1617)
Q Consensus 266 ~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~ 312 (1617)
.+..-+++.+.++-..+.+++..|+. ++....++.-++|...+
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~----~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLN----NVSKTNPEFANQFYQQY 211 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHH----HHHH-SHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH
No 201
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=25.72 E-value=6.4e+02 Score=33.95 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=122.1
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000361 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1617)
Q Consensus 163 ~~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~-----~----------~-----------~a~~lA~~vi~~~ 216 (1617)
.|.-+.+.|-|...+.=-.++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477788888888888888888888887776654553221 0 0 2246777777655
Q ss_pred hhhhHHHHHHHHHHhhcCCC--CCCCC----cchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHH-HHHHHHHHHh
Q 000361 217 AGKLEAGIKQFLVSSMSGDS--RPGHS----HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 289 (1617)
Q Consensus 217 ~dkL~~~i~q~f~~~l~~~~--~~~~~----~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~R-l~At~llG~m 289 (1617)
-..=.++++..|-+-+..++ .+... ...+.+|+-.|.+|.|..+-.+=|.=+- --.|=++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG-- 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG-- 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc--
Confidence 44445555555544333332 23222 2258999999999999999888886322 222223333 33444444
Q ss_pred hcCCC-C---CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH-HhhhCCChhHHHHHHHH
Q 000361 290 FAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL-CDRLLDFDENVRKQVVA 364 (1617)
Q Consensus 290 fs~~~-~---~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L-~~rL~D~DekVR~aaV~ 364 (1617)
... . -..=+|+.+|..|+.||.=.+|.- |-.+- .++ .+-++.+ .+--+++|+ --+-
T Consensus 612 --LqENiRvRRAGfAYRr~F~kF~qRyailsp~t---~~twq---------GD~-~~av~~il~~~~m~~~q-yQmG--- 672 (1106)
T KOG0162|consen 612 --LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT---WPTWQ---------GDE-KQAVEHILRDVNMPSDQ-YQMG--- 672 (1106)
T ss_pred --hhhheeehhhhhHHHHHHHHHHHHheecCccc---ccccc---------cch-HHHHHHHHHhcCCChhH-hhcc---
Confidence 221 0 112369999999999998888765 43221 122 2222222 222233332 1111
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000361 365 VICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1617)
Q Consensus 365 ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~~~~ 413 (1617)
....|-.-|+.++ +.|-||||++.== ..++-+.|+.+..
T Consensus 673 -----~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 673 -----VTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred -----ceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 1122334466655 5688999988521 1233456776644
No 202
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=25.40 E-value=24 Score=40.88 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=11.0
Q ss_pred cccccccCCCCCCccccc
Q 000361 1549 SREEANEDGKSDSEGNEE 1566 (1617)
Q Consensus 1549 ~~~~~~~~~~~d~~~~~~ 1566 (1617)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555656666666665543
No 203
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.51 E-value=3.3e+02 Score=36.83 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000361 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1617)
Q Consensus 242 ~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~ 321 (1617)
..+.-..|-+.+--.++.+.-|+..+|. .|-.+|+-|++++.-+++..+.
T Consensus 106 sdd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~-------------------------- 155 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT-------------------------- 155 (970)
T ss_pred hhHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH--------------------------
Confidence 3356677888888899999999999887 8999999999999999987652
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000361 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1617)
Q Consensus 322 ~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1617)
.+.++|+.+|. =+..|.+-|.|..|-||-+++-.++++...+
T Consensus 156 ----e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 156 ----ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred ----HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 23466777774 3556778899999999999999998887644
No 204
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=24.44 E-value=7e+02 Score=31.33 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCC--Ch
Q 000361 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPY--SD 95 (1617)
Q Consensus 18 ~~~~s~~eLlkrL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy--~d 95 (1617)
.||......+..|.+|-+.+.. |+. ..+..-++.+.-.|...-++-|--.-||..+.--|-.|++-+. ..+. ..
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3677777888888888777652 221 2445556666667777777777677799998888888888655 1222 24
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhc
Q 000361 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1617)
Q Consensus 96 ~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~ 160 (1617)
+++..+|.-|+.---. -|-.+||.+|+++|... .++|..||-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7888888888874322 24478999999999864 4566666666555444
No 205
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.67 E-value=1.3e+03 Score=28.98 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH----HHHHHhhcCCCCCCCCcchHHHHHHHHHhh-------cchhhhhhhhhhccccc
Q 000361 204 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-------SPQILSGVVPYLTGELL 272 (1617)
Q Consensus 204 ~a~~lA~~vi~~~~dkL~~~i~----q~f~~~l~~~~~~~~~~~~~h~Li~eL~~~-------~P~lL~~ViP~Le~eL~ 272 (1617)
+||++.+-+|.... -++..++ -|+.-.+..+....-+...+..+|+.+..+ ...++..++--.|+
T Consensus 44 a~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 77888877775542 2222221 122222222221112233577888887777 34555566666565
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-------CChHHHHH
Q 000361 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQILT 345 (1617)
Q Consensus 273 sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p~~-------~~~~eii~ 345 (1617)
.+...|..|.+||.++.-... .++ .+-.-+...+.-..|-..++=-.++...-++| ++|.. -+...++.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELV-AECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHH
Confidence 788999999999998875421 111 11112334444445544454445555555544 44431 23344555
Q ss_pred HHHhh----hCCChhHHHHH-HHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000361 346 ALCDR----LLDFDENVRKQ-VVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1617)
Q Consensus 346 ~L~~r----L~D~DekVR~a-aV~ai~~la~-----~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La~LY~~ 410 (1617)
.+.+- ..+..+-=|.+ +.++|..+-. ..+..-+...++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 196 pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55554 22222111333 3334433322 111122336788888888888889999999999999985
No 206
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.23 E-value=3.1e+02 Score=30.33 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000361 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1617)
Q Consensus 317 ~~VR~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~V 396 (1617)
-..|..|+-.+..+.. ......+++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3455556666655443 112446677777777778888888888887777766 34445555544444444444
Q ss_pred HHHH
Q 000361 397 KRYT 400 (1617)
Q Consensus 397 R~eA 400 (1617)
.++|
T Consensus 192 ~r~a 195 (197)
T cd06561 192 LRYA 195 (197)
T ss_pred HHHH
Confidence 4444
No 207
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.31 E-value=1e+03 Score=28.35 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC---CchhhcHHHHHHHHhhhcCCChhHH
Q 000361 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVR 320 (1617)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~---~~a~~y~~~w~~fL~R~~D~s~~VR 320 (1617)
+.+.+++.+..-.++.|...|-. ..-+.=+|..|...|+.+...... ...+-|+.+++.++.| .++.
T Consensus 100 ~l~~ilasv~~G~~~~L~~li~~-----~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~----~~~~- 169 (249)
T PF06685_consen 100 DLPRILASVGDGDIEPLKELIED-----PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLER----NPSF- 169 (249)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc----CchH-
Confidence 56778887777777777765421 123577899999999988876421 2455556666666654 4444
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000361 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1617)
Q Consensus 321 ~~~v~~~~~iL~s~p~~~~~~eii~~L~~rL~D~De 356 (1617)
.|-..+..|+--+|. +...+|-+++..-|+|+.=
T Consensus 170 -~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 170 -LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred -HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCccc
Confidence 666666666655553 2345566677777777643
No 208
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=21.54 E-value=3.3e+02 Score=30.60 Aligned_cols=111 Identities=24% Similarity=0.344 Sum_probs=55.1
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCC--ChhHHHHHHHHHHHhccCC-CCCCCCChhhHHHHHHHHHhhhhhhhhccCCchH
Q 000361 70 KDVKLLVATCICEITRITAPEAPY--SDDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 146 (1617)
Q Consensus 70 ~~Vr~~vAcCLadIlRI~APdaPy--~d~~LkdIF~l~v~~f~~L-~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~ 146 (1617)
..||..++-||..|+.-..|..|+ ..++|.+||..--.. .+ ......+|.+-+-||. + +.
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~-------------~--~~ 83 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLD-------------L--PE 83 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhc-------------c--HH
Confidence 349999999999999544343333 336777777543221 11 1112234544443332 1 13
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc---ccccccHHHHHHHHHhhc
Q 000361 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALG 198 (1617)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~---Ese~ip~~lLd~IL~~l~ 198 (1617)
.-..++..+.--+ ++..+.+......-|...+. +.......++..|+..+.
T Consensus 84 y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 84 YRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3333444444333 23444555555555555553 334455555555555554
No 209
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.13 E-value=4.4e+02 Score=30.03 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=67.8
Q ss_pred hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhH-------HHHHHHHHHHhccCCCCCCCCC
Q 000361 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1617)
Q Consensus 47 ~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~-------LkdIF~l~v~~f~~L~d~~~p~ 119 (1617)
.|-...+.++..|+...+=.+....-.+++++||+-|--==.+|.-|+.+. --.||..|-+-+.- .
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~----~--- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSL----P--- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCC----c---
Confidence 466778888999988777777777788999999876555456899997533 34566666655431 1
Q ss_pred hhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHH
Q 000361 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1617)
Q Consensus 120 f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1617)
..-+..++.+-.+...++|..----+.-.++|+.+|+
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 1224445555566656665554334666777777776
No 210
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=20.73 E-value=2.5e+03 Score=29.85 Aligned_cols=342 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCCCChhH-HHHHHHHHHHhccCCCCCC--CCChhhHHHHHHHHHhhhhhhhhccC------------C-
Q 000361 80 ICEITRITAPEAPYSDDV-LKDIFQLIVGTFSGLKDTG--GPSFGRRVVILETLAKYRSCVVMLDL------------E- 143 (1617)
Q Consensus 80 LadIlRI~APdaPy~d~~-LkdIF~l~v~~f~~L~d~~--~p~f~~~~~lLe~la~vks~vl~~DL------------~- 143 (1617)
|++|+--+--..-|.+.. +.-||+.++++...|.+.+ ...-.+||.++|++|.-|-=--++.| |
T Consensus 346 il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~~~V~A~R~g 425 (1697)
T KOG3687|consen 346 LLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRAQSVHAARDG 425 (1697)
T ss_pred HHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhhhccCcCCch
Q ss_pred chHHHHHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcH----HHHHHHHHHHHH
Q 000361 144 CDELVNEMYSTFFAVASDDH----PESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQ 215 (1617)
Q Consensus 144 ~~~Li~~lF~~ff~~v~~~~----~~~V~~~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~~----~a~~lA~~vi~~ 215 (1617)
.-.++..+..-||.-.+... .-.+...+..+-.+..+| .|-..|+-..|+++.-++.. .+++.-.++...
T Consensus 426 wiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yee--EIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~ 503 (1697)
T KOG3687|consen 426 WIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEE--EILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEG 503 (1697)
T ss_pred HHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHH--HhhhheeeEeeccccccchhHHHHHHHHHHHHHHhh
Q ss_pred hhhh----hHHHHHHHHHHhhcCCCCCCC-----------------------CcchHHHH--HHHHHhhcchhhhhhhhh
Q 000361 216 CAGK----LEAGIKQFLVSSMSGDSRPGH-----------------------SHIDYHEV--IYDVYRCSPQILSGVVPY 266 (1617)
Q Consensus 216 ~~dk----L~~~i~q~f~~~l~~~~~~~~-----------------------~~~~~h~L--i~eL~~~~P~lL~~ViP~ 266 (1617)
|..+ +-..+-.+.+..+.+.+.-.+ ..++.|.| +..+--+---+..-++|+
T Consensus 504 C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A~kl~~lP~~ha~~v~~~l~~h~~Lhy 583 (1697)
T KOG3687|consen 504 CHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILATKLYTLPASHATRVYEMLVSHIQLHY 583 (1697)
T ss_pred cchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcCCCCCc-----------------------------hhhcHHHHHHHHhhhc-CCC
Q 000361 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-----------------------------NEQFHSVFSEFLKRLT-DRI 316 (1617)
Q Consensus 267 Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~-----------------------------a~~y~~~w~~fL~R~~-D~s 316 (1617)
......----.+|++|-..+-.+=+...-.+ +..|.-+|+-.+.... |.+
T Consensus 584 ~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~~~p~~i~~~~~~~~~~qCl~~~~D 663 (1697)
T KOG3687|consen 584 KHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPPTGPPVVPYSLLFRVLLQCLKQESD 663 (1697)
T ss_pred cCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCCCCCCcccHHHHHHHHHHHhccccc
Q ss_pred hhHHHHHHHHhHHHHhcC--CCCCChHHHHHHHHhhh----------CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000361 317 VAVRMSVLEHVKSCLLTD--PSRADAPQILTALCDRL----------LDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1617)
Q Consensus 317 ~~VR~~~v~~~~~iL~s~--p~~~~~~eii~~L~~rL----------~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~ 384 (1617)
-.||..++...+..|..- -....+.++..+|+..+ .|.++-+=.-|..++.-+-..--.---.+++..
T Consensus 664 ~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~Pv~~~L~~yh~~lQ~~~~~~~I~~ 743 (1697)
T KOG3687|consen 664 WKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVVPVLTALISYHNYLQKTKQREMIYC 743 (1697)
T ss_pred HHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeehHHHHHHHHHHHhcCCcchhhHHHH
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhh
Q 000361 385 VAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1617)
Q Consensus 385 laeR~rDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~ 435 (1617)
+-.|+--.-.+|=..+|..+.-.--.++ +...|+.+++.
T Consensus 744 l~q~li~~~aSVcv~~lsi~~Lemp~~~------------~~~LpD~v~Q~ 782 (1697)
T KOG3687|consen 744 LEQGLIHRCASVCVVALSICSLEMPDII------------IKALPDLVVQL 782 (1697)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhhHHHH------------HHHhhHHHHHH
No 211
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=20.65 E-value=3e+03 Score=30.71 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh---hcCCChhHHHHHHHHhHHHHhcCCC
Q 000361 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR---LTDRIVAVRMSVLEHVKSCLLTDPS 336 (1617)
Q Consensus 279 Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R---~~D~s~~VR~~~v~~~~~iL~s~p~ 336 (1617)
+..-.++|=.|-+.+.+..+-.-.....-.+.+ -.|-+-+.|...-+++-+|+.++|+
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 344556666677776544433332222222222 2223778899999999999999986
No 212
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=20.36 E-value=1.7e+03 Score=31.89 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=12.4
Q ss_pred HHHHHhhCCcCccccHHHHHHH
Q 000361 632 LGILARFSPLLLGGTEEELVNL 653 (1617)
Q Consensus 632 L~~IS~~~P~lFk~~~~~Li~l 653 (1617)
|..+|++|..-+-.++....+.
T Consensus 583 l~sVS~yYS~eLv~~vR~VLqi 604 (1081)
T PF10266_consen 583 LSSVSQYYSSELVKYVRKVLQI 604 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777665555555444443
No 213
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.35 E-value=3.6e+02 Score=34.85 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=56.7
Q ss_pred HHHhhcCCCccchHHHHHHHHHHhhhhc---CCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCC
Q 000361 709 ALAAITKDDGLKSLSVLYKRLVDMLEEK---THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKA 785 (1617)
Q Consensus 709 ~Laa~~~~~~~~~~~~L~~~L~~~L~~~---~~l~t~L~sL~~Iaq~ap~vfe~~~~eI~~fiik~IL~~~~~~~~~~~~ 785 (1617)
+|+|+.+.+=....+.|+++|+-++... ..-+..++++.+||-+--. +..-+|+.+=|--||+...+.
T Consensus 219 ALvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv~Leil~lLLe~PTd------ 289 (739)
T KOG2140|consen 219 ALVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIVALEILTLLLERPTD------ 289 (739)
T ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCC------
Confidence 3444444442233345667777665422 1456667777777754211 122345544444456554331
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccc
Q 000361 786 CWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837 (1617)
Q Consensus 786 ~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEi~ 837 (1617)
++ ...-|..||.|...|.-+ ...+...+|.-|++|+..|||.
T Consensus 290 ----dS--vevaI~flkecGakL~~V----Spr~~n~IfErlR~ILhe~Eld 331 (739)
T KOG2140|consen 290 ----DS--VEVAIAFLKECGAKLAEV----SPRALNGIFERLRYILHEGELD 331 (739)
T ss_pred ----ch--HHHHHHHHHHHHHHHHHh----ChHHHhHHHHHHHHHHhHhhHH
Confidence 11 112244455544444322 2235677888888988888875
No 214
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.34 E-value=9.6e+02 Score=26.74 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHH
Q 000361 203 DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1617)
Q Consensus 203 ~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl 280 (1617)
-..+.+|..|+..+...+.+.+-.++...+..-+ .-...+ ...++..+..-. ..+.|.++.++.++++=+|.
T Consensus 65 ~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~--~W~~~D~~~~~~~~~~~~~~----~~~~~~~~~W~~s~~~w~rR 138 (213)
T PF08713_consen 65 REERYLALLILDKRRKKLTEEDLELLEKWLPDID--NWATCDSLCSKLLGPLLKKH----PEALELLEKWAKSDNEWVRR 138 (213)
T ss_dssp HHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCC--CHHHHHHHTHHHHHHHHHHH----GGHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCC--cchhhhHHHHHHHHHHHHhh----HHHHHHHHHHHhCCcHHHHH
Confidence 3667788888877777776665555555443210 000001 011222111101 23567778888888888888
Q ss_pred HHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000361 281 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1617)
Q Consensus 281 ~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~s~p 335 (1617)
.|..++-..+.. ..++.++..--....|...-||.++-=+...+...+|
T Consensus 139 ~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 139 AAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 887665444332 2223333333344566777777776666666555544
No 215
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.01 E-value=1e+02 Score=25.55 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.6
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000361 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1617)
Q Consensus 261 ~~ViP~Le~eL~sdd~~~Rl~At~llG~mf 290 (1617)
.++||.|-.-|.+.+..+|..|+-.|+.|-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 358888999999999999999999999874
Done!