Query 000361
Match_columns 1617
No_of_seqs 279 out of 466
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 16:34:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000361.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_140-144//hhsearch_pdb/000361hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 93.1 34.0 290 64-409 18-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 83.9 54.3 94 743-864 650-743 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 81.6 56.3 163 245-407 110-283 (852)
4 1b3u_A Protein (protein phosph 1.0 1 1 80.4 33.5 27 343-369 165-191 (588)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 80.0 67.3 48 850-902 947-995 (1230)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 79.8 47.3 230 64-310 56-303 (1230)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 79.2 52.7 679 68-865 53-813 (861)
8 1qgr_A Protein (importin beta 1.0 1 1 79.0 54.8 225 627-867 583-831 (876)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 74.2 54.0 150 261-410 133-296 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 70.0 34.5 222 624-891 298-522 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=93.06 Aligned_cols=290 Identities=13% Similarity=0.144 Sum_probs=111.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20589821279899998788751299999991589999999998216998889987146999999998432532101698
Q 000361 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1617)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~lLe~lA~vks~vl~~DL~ 143 (1617)
.|+|.|..+|..++-+|..+.+..-| +....++..++.... |. ++ .-+..+.+.|..+-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 85062199999999719999998697-----989998998898755----78-58--999999999977876-----058
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 42899999999997324998251999999999999602345--5388999999961379857899999999999655447
Q 000361 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLE 221 (1617)
Q Consensus 144 ~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~--ip~~vLd~IL~~l~~~~~~~a~~lA~~ii~~~~dkL~ 221 (1617)
..+....++..+..... +....|.......|..+...... +...++. ++..+........+..|..++......+.
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSPSDLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 59899998999999874-76079999999999999997999999999999-99998507771799999999999998569
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 99999999840699999887403889999998416303441121120123577768999999999986259999821004
Q 000361 222 AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1617)
Q Consensus 222 ~~i~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~~y 301 (1617)
. .....++|.+..-+..++..+|..|.+.+|.+...-+.. ...
T Consensus 159 ~-----------------------------------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~ 201 (588)
T 1b3u_A 159 S-----------------------------------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVK 201 (588)
T ss_dssp H-----------------------------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred H-----------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--HHH
T ss_conf 9-----------------------------------999999999999848997889999999899999981677--679
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCCHH
Q ss_conf 999999983005999339999999969978219999986789999986607971679999999999965321-3788988
Q 000361 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVE 380 (1617)
Q Consensus 302 ~~~w~~fL~R~~Dks~~VR~~~v~~~~~iL~s~p~~~~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~V~~e 380 (1617)
+.+...++.-.+|.++.||...+++...+....+.......+++.+...+.|.+++||.+++.+++.++... ...+...
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 281 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999882499288999899999999985798888878999999980699778999999999999998195210558
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999976036893699999999999999
Q 000361 381 TVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1617)
Q Consensus 381 lL~~l~eR~RDKK~~VR~eAi~~L~~LY~ 409 (1617)
++..+...+.|..+.||..|...|+.+-.
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=83.92 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 89999999331433145057899999983512566667888787778615678999999999995159876664320588
Q 000361 743 LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDD 822 (1617)
Q Consensus 743 L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ 822 (1617)
...|+.|++..+..|..+...|..++++.+ . . +....+..-++++..++..+-. ...+.+..
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l-~-~------------~~~~v~~~a~~alg~i~~~~~~----~~~p~~~~ 711 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNL-N-P------------EFISVCNNATWAIGEISIQMGI----EMQPYIPM 711 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTC-C-T------------TSHHHHHHHHHHHHHHHHHHGG----GGGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-C------------CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 999999999816888987999999999876-9-4------------2068999999999999997117----67878999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999954037666677899666767579999999985310
Q 000361 823 LLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 864 (1617)
Q Consensus 823 ll~lL~~il~~GEi~~~~~t~~~~ksrLRLaAa~~lLKLAr~ 864 (1617)
++..|..++.. |. ....++-.|+.++-+|++.
T Consensus 712 il~~L~~~l~~---------~~-~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 712 VLHQLVEIINR---------PN-TPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHTC---------SS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---------CC-CCCHHHHHHHHHHHHHHHH
T ss_conf 99999998579---------98-8720778899999999986
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=81.65 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH-----HCHHHHHHHHHHHCCCCHH
Q ss_conf 889999998416-3034411211201235777689999999999862599998210-----0499999998300599933
Q 000361 245 YHEVIYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVA 318 (1617)
Q Consensus 245 ~h~Li~eL~~~~-P~lL~~ViP~Le~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~Dks~~ 318 (1617)
+-.++..|.+.. |.-....+|.|..-+.+.+..+|..|..+++.++...+..+.. ....++..++.-+.|.++.
T Consensus 110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 189 (852)
T 4fdd_A 110 VGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189 (852)
T ss_dssp HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999986481356899999999870999899999999999999985787563431332999999999985679789
Q ss_pred HHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCC
Q ss_conf 999999996997821999--99867899999866079716799999999999653213788---9888999997603689
Q 000361 319 VRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKS 393 (1617)
Q Consensus 319 VR~~~v~~~~~iL~s~p~--~~~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---~~elL~~l~eR~RDKK 393 (1617)
||...+++...++...+. .....++++.|...+.|.|+.||.+++.+++.++......+ -..++..+...+.|..
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999986463879988999999999871799778999999999999985779899889999999998706996
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 36999999999999
Q 000361 394 VLVKRYTMERLADI 407 (1617)
Q Consensus 394 ~~VR~eAi~~L~~L 407 (1617)
..||..|++.+..+
T Consensus 270 ~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 270 ENVALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999998
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=80.41 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=10.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999998660797167999999999996
Q 000361 343 ILTALCDRLLDFDENVRKQVVAVICDV 369 (1617)
Q Consensus 343 i~~~L~~rL~D~DEkVR~aaVkai~~l 369 (1617)
++..+...+.|.|..||.+++.+++.+
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEF 191 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999984899788999999989999
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=80.03 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 5799999999853104-8877889999983124677266999999999986740
Q 000361 850 LRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKD 902 (1617)
Q Consensus 850 LRLaAa~~lLKLAr~~-d~~i~~~~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~~ 902 (1617)
+|-.++.++=+|+... +..+| .+. ....+++..+|..-+.-+...+..
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p----~l~-~~l~~~~~~~R~~~~~~l~~~~~~ 995 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLP----RLK-GYLISGSSYARSSVVTAVKFTISD 995 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHH----HHT-TTSSSSCHHHHHHHHHHTGGGCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6899998875665067688889----999-985699788999999999999706
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=79.78 Aligned_cols=230 Identities=13% Similarity=0.148 Sum_probs=99.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20589821279899998788751299999991589999999998216998889987146999999998432532101698
Q 000361 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1617)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~lLe~lA~vks~vl~~DL~ 143 (1617)
.|.+++..||..++-||..+..-+.+ .++..|+..++..+ .|++.. . +......|+.+-.. +.-+
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~~i~~~---l~~~ 120 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLKTVIGE---LPPA 120 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHHHHHHH---CC--
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHHHHHHH---CCCC
T ss_conf 86699989999999999999975879------89999999999986---698388--9-99999999999996---7974
Q ss_pred ------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ------42899999999997324998251999999999999602345-5---3889999999613798578999999999
Q 000361 144 ------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKNDTARRLAMNVI 213 (1617)
Q Consensus 144 ------~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~-i---p~~vLd~IL~~l~~~~~~~a~~lA~~ii 213 (1617)
......+++..++....++....+......++..+++.... + -..++..++..+... ...-+.-|...+
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al 199 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIAL 199 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 4444117889999999999987578846799999999999999827677887999999999987599-689999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99655447----99999999840699999887403889999998416303----44112112012357776899999999
Q 000361 214 EQCAGKLE----AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQLDTRLKAVGL 285 (1617)
Q Consensus 214 ~~~~dkL~----~~i~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViP~Le~EL~sdd~~~Rl~At~l 285 (1617)
...+..+. +.+-.++...+..+.. ......+-+.+..|.+..|.. +..++|.+-.-+..++..+|..|...
T Consensus 200 ~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 200 GHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp HHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999856899999999999998616775-568999999999999986898998899999999998668977899999999
Q ss_pred HHHHHCCCCCCCHHHCHHHHHHHHH
Q ss_conf 9986259999821004999999983
Q 000361 286 VGDLFAVPGSANNEQFHSVFSEFLK 310 (1617)
Q Consensus 286 lG~mfs~~~s~~a~~y~~~w~~fL~ 310 (1617)
++.+...-+..+..-.+.+...++.
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~ 303 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLK 303 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 9999997848777768999999999
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=79.15 Aligned_cols=679 Identities=13% Similarity=0.124 Sum_probs=297.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98212798999987887512999---------99-991589999999998216998889987146999999998432532
Q 000361 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1617)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~APd---------aP-y~d~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~lLe~lA~vks~v 137 (1617)
.+..||.+.|..|-..++-+-+. .. .++++...|-..++..+. +++ +. . +..+-..++.+-
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~-~~-v-r~~~~~~l~~i~--- 123 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIE-PR-I-ANAAAQLIAAIA--- 123 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSS-HH-H-HHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCC-HH-H-HHHHHHHHHHHH---
T ss_conf 98679999999987022575748789999767662999999999999999877---996-37-9-999999999999---
Q ss_pred HHCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCC-CHHHH
Q ss_conf 1016984---2899999999997324998251999999999999602345-------53889999999613798-57899
Q 000361 138 VMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRNK-NDTAR 206 (1617)
Q Consensus 138 l~~DL~~---~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~-------ip~~vLd~IL~~l~~~~-~~~a~ 206 (1617)
..++|. .+++..+ +..+..+....+......++..+.++... .-..++..++..+.... +..-+
T Consensus 124 -~~~~p~~~w~~ll~~L----~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 198 (861)
T 2bpt_A 124 -DIELPHGAWPELMKIM----VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198 (861)
T ss_dssp -HHHGGGTCCHHHHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -HHHCCCCCCHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf -8467645549999999----99872689789999999999999972784356789889999999998415799987899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999965544799999999840699999887403889999998416303441121120123577768999999999
Q 000361 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1617)
Q Consensus 207 ~lA~~ii~~~~dkL~~~i~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sdd~~~Rl~At~ll 286 (1617)
..|.+.+..+...+... +.. . .. | .. +++.|..-+.+++..+|..|.+.+
T Consensus 199 ~~al~~l~~~~~~~~~~--------~~~-------~-~~-------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 199 LAALNALADSLIFIKNN--------MER-------E-GE-------R----NY---LMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp HHHHHHHHHHGGGCHHH--------HTS-------H-HH-------H----HH---HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------CCC-------H-HH-------H----HH---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999999987--------067-------6-68-------9----99---999999986599889999999999
Q ss_pred HHHHCCCCCCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------CC--CC----CHHHHHHH
Q ss_conf 9862599998210049-99999983005999339999999969978219-------------99--99----86789999
Q 000361 287 GDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTA 346 (1617)
Q Consensus 287 G~mfs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~v~~~~~iL~s~-------------p~--~~----~~~ei~~~ 346 (1617)
+++....+..+....+ .+|..++....|.+..||...+++...+.... |. .. ....++..
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999998899999999998737727899999999999998788643332103577325699999999889999
Q ss_pred HHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 986607971-------6799999999999653213788988899999760368936999999999999998632114998
Q 000361 347 LCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1617)
Q Consensus 347 L~~rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~l~eR~RDKK~~VR~eAi~~L~~LY~~~~~~~~~~~ 419 (1617)
+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..|+.+-.. +.. .
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~~~----~ 403 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-PDK----V 403 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-SCH----H
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCH----H
T ss_conf 99998706653012468689999999999998740868999999999875799726999999999999859-987----8
Q ss_pred CCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520001562588862320277885048998420687999997999999-9--9998129999999999999999999999
Q 000361 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1617)
Q Consensus 420 ~~~~~~~wIP~~IL~~~Y~~d~~~~lVE~vL~e~LlP~~~~~~~R~~~-l--~~l~~~LD~~~~kal~~il~~k~~l~~~ 496 (1617)
.....+..|-..++..+. | .++.-|... | ..+...+.+. + .....+...
T Consensus 404 ~~~~~l~~il~~l~~~l~--d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~ 455 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMN--D------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG--C------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--C------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHH
T ss_conf 889989999999998828--9------------------95999999999999999873540-------4-878889999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHH-HHHH
Q ss_conf 999999985513899289999999999998752399--3578899999884100889999999736-79--9999-9999
Q 000361 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFD-QAFT 570 (1617)
Q Consensus 497 ~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPD--p~Ka~~~L~kf~klnD~Ri~klLk~~id-p~--ts~~-t~~~ 570 (1617)
+..++... + +.+.+.......+..++..+++ +......+ ..++..|..+++ ++ ...+ .+..
T Consensus 456 l~~l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 456 VQACLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp HHHHHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred HHHHHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999976---4--47289999999999999862313542468999--------99999999998575861589999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999558976599999999862102557668999999999611-------5----201465889999999998528
Q 000361 571 GRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFS 639 (1617)
Q Consensus 571 a~~eLlkrL~~~~~~~e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~-------~----~~~~~~~~~a~eLL~~IS~~~ 639 (1617)
+...+....+.. ...++.. -++.++..+.... . .........+.+.|..+....
T Consensus 523 al~~l~~~~~~~--~~~~~~~-------------l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 523 ALTTMVEYATDT--VAETSAS-------------ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp HHHHHHHHCCGG--GHHHHHH-------------HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHH--HHHHHHH-------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999976265--6999999-------------9999999999887532013885567779999999999999999985
Q ss_pred CCCCCCCHHHHHHH----HHHCCC-CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 95734449999999----751021-0046699999986020475320066228999998840599587899999999630
Q 000361 640 PLLLGGTEEELVNL----LKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1617)
Q Consensus 640 P~lFk~~~~~L~~l----L~~~~~-~~~~~aLkiLak~~~~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAVr~Laa~~ 714 (1617)
+.-+..+...++.. +...+. .+.+.++.++........+.+.+.-..+.+.|.+......+.....|+.++..+.
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 787411---3999999999852105----998348899999993314331450578999999835125666678887877
Q 000361 715 KDDGLK---SLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1617)
Q Consensus 715 ~~~~~~---~~~~L~~~L~~~L~~~----~~l~t~L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W 787 (1617)
..-+.. .+..++..+...+... .--.+.+.+||.|++..+..|..+...|...++.-+-..+ +. ++.++
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-CCHHH
T ss_conf 874540311199999999997278655676659999999999998405089999999999999973678---99-97588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78615678999999999995159876--6643205889999999540376666778996667675799999999853104
Q 000361 788 DDRSELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1617)
Q Consensus 788 ~d~se~~~aKi~aLK~Lvn~ll~~~~--~~~~~~i~~ll~lL~~il~~GEi~~~~~t~~~~ksrLRLaAa~~lLKLAr~~ 865 (1617)
. ......+..+++++...+....+ ....+.+..++.+|...+...+ ..+...+|.+|..++-.|++.+
T Consensus 744 ~--~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 744 L--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999999999999826778899999999999999874855--------5786999999999999999882
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=78.98 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHCC-CCCCCCHHHHHH----HHHHCC--CCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCC-
Q ss_conf 99999999985289-573444999999----975102--1004669999998602047532006622899999884059-
Q 000361 627 SCMDILGILARFSP-LLLGGTEEELVN----LLKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG- 698 (1617)
Q Consensus 627 ~a~eLL~~IS~~~P-~lFk~~~~~L~~----lL~~~~--~~~~~~aLkiLak~~~~~~e~~~~~~s~l~~~L~~lal~G- 698 (1617)
.+...|..+....+ .-|..+...++. ++.... ..+.+.++.++..+.......+.+.-..+.+.|.......
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999828542057899999999999985368888508999999999999876099999999999999875865
Q ss_pred CHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 958789999999963078741---13999999999852105----99834889999999331433145057899999983
Q 000361 699 SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSK 771 (1617)
Q Consensus 699 tp~qAKyAVr~Laa~~~~~~~---~~~~~L~~~L~~~L~~~----~~l~t~L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ 771 (1617)
.+..-+.|+.+|+.+...-+. .....++..+...|... .-....+.++|.|+...+..|......|...+.+-
T Consensus 663 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~ 742 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQA 742 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 08799999999999999887854645999999999974871233876399999999999970352799999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 512566667888787778615678999999999995159876---------66432058899999995403766667789
Q 000361 772 ILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIES 842 (1617)
Q Consensus 772 ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~---------~~~~~~i~~ll~lL~~il~~GEi~~~~~t 842 (1617)
+ ... . + .++++|.++ ....+...++++...+.+... ....+.+..++.++..+... +.
T Consensus 743 ~-~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~ 809 (876)
T 1qgr_A 743 S-QAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD-------ED 809 (876)
T ss_dssp H-TCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC-------SC
T ss_pred H-HCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------CC
T ss_conf 8-555-8-9-997588999--99999999999999999974575555543889999999999999998658-------88
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9666767579999999985310488
Q 000361 843 SSVDKAHLRLASAKAVLRLSRQWDH 867 (1617)
Q Consensus 843 ~~~~ksrLRLaAa~~lLKLAr~~d~ 867 (1617)
.-...|-.|..++=.|+..+..
T Consensus 810 ---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 810 ---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred ---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf ---8889999999999999988284
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=74.21 Aligned_cols=150 Identities=11% Similarity=0.167 Sum_probs=65.6
Q ss_pred HHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC---CHHHCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC
Q ss_conf 41121120123577-7689999999999862599998---2100499999998300599--9339999999969978219
Q 000361 261 SGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSA---NNEQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTD 334 (1617)
Q Consensus 261 ~~ViP~Le~EL~sd-d~~~Rl~At~llG~mfs~~~s~---~a~~y~~~w~~fL~R~~Dk--s~~VR~~~v~~~~~iL~s~ 334 (1617)
..++|.|..-+.++ +..+|..|..+++.++..-+.. +....+.++..|+....|. ++.||...+++...++..-
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987268978999999999999997278435678988999999999841579998789999999999999999
Q ss_pred ---CCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf ---9999-86789999986607971679999999999965321378898----889999976036893699999999999
Q 000361 335 ---PSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLAD 406 (1617)
Q Consensus 335 ---p~~~-~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~l~eR~RDKK~~VR~eAi~~L~~ 406 (1617)
.... ....++..|...+.|.|++||.+++.++..++......+.. .++..+...+.|....||..|+..+..
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98706766899999999998659988999999999999999988999998899999999998737727899999999999
Q ss_pred HHHH
Q ss_conf 9998
Q 000361 407 IFRG 410 (1617)
Q Consensus 407 LY~~ 410 (1617)
+...
T Consensus 293 l~~~ 296 (861)
T 2bpt_A 293 ICEE 296 (861)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9987
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=70.00 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 58899999999985289573444999999975102100466999999860204753200662289999988405995878
Q 000361 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 703 (1617)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~aLkiLak~~~~~~e~~~~~~s~l~~~L~~lal~Gtp~qA 703 (1617)
..-.+.+-|..|....|.+|..+...+.... +++..+...+|.+|++.+.. ++ -..+...|..|.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~n----v~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--AN----IAQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--ST----HHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HH----HHHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--23----99999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999963078741139999999998521059--98348899999993314331450578999999835125666678
Q 000361 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRN 781 (1617)
Q Consensus 704 KyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~--~l~t~L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ILl~~~~~~~ 781 (1617)
+.|+++|+.+...-. .....++..|++.+.... -....+.++..|.+..|...+. ++..+..-+ ..
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~l-~~------ 438 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCENL-DS------ 438 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHTT-TT------
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHH-HH------
T ss_conf 999999999998574-679999999999983551689999999999999979205789----999999888-74------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88787778615678999999999995159876664320588999999954037666677899666767579999999985
Q 000361 782 DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 861 (1617)
Q Consensus 782 ~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~t~~~~ksrLRLaAa~~lLKL 861 (1617)
+..+ .++..+ -|++|--..... ... .+|..++. .+. . .-...|+++-.++.||
T Consensus 439 ------~~~~---~~~~~~-----~wilGey~~~~~-~~~---~~l~~l~~--~~~---~----~~~~vr~~~l~a~~Kl 491 (591)
T 2vgl_B 439 ------LDEP---DARAAM-----IWIVGEYAERID-NAD---ELLESFLE--GFH---D----ESTQVQLTLLTAIVKL 491 (591)
T ss_dssp ------CCSH---HHHHHH-----HHHHHTTCTTCT-THH---HHHHHHST--TCS---S----SCHHHHHHHHHHHHHH
T ss_pred ------CCCH---HHHHHH-----HHHHHCCCCCCC-CHH---HHHHHHHH--HHC---C----CCHHHHHHHHHHHHHH
T ss_conf ------2378---999999-----999970312136-789---99999998--664---5----9888999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf 3104887788999998312467-72669999
Q 000361 862 SRQWDHKIPVDVFHLTLRTPEI-SFPQAKKL 891 (1617)
Q Consensus 862 Ar~~d~~i~~~~f~l~~~~~qD-~~~~VR~~ 891 (1617)
.........+.+.+++.....| ..++||.+
T Consensus 492 ~~~~p~~~~~~i~~ll~~~~~d~~d~evrdR 522 (591)
T 2vgl_B 492 FLKKPSETQELVQQVLSLATQDSDNPDLRDR 522 (591)
T ss_dssp HTTCCSTTHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9619657999999999986535899679999
Done!