Query 000362
Match_columns 1617
No_of_seqs 370 out of 1796
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 6E-236 1E-240 2190.0 83.3 1320 132-1597 239-1597(1598)
2 cd00139 PIPKc Phosphatidylinos 100.0 8.8E-68 1.9E-72 614.5 28.8 256 1324-1587 53-313 (313)
3 COG5253 MSS4 Phosphatidylinosi 100.0 1E-68 2.2E-73 618.8 12.8 359 1205-1597 242-607 (612)
4 smart00330 PIPKc Phosphatidyli 100.0 2.4E-66 5.1E-71 609.7 27.4 259 1319-1586 21-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 4.5E-58 9.7E-63 532.3 22.0 252 1325-1587 95-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 2E-56 4.3E-61 509.1 18.3 222 1355-1586 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 4.2E-55 9.2E-60 548.6 27.2 248 1325-1587 401-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 5.9E-48 1.3E-52 442.2 27.3 255 206-472 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 6.4E-41 1.4E-45 419.6 26.2 256 209-477 145-413 (525)
10 KOG0364 Chaperonin complex com 100.0 5.6E-40 1.2E-44 376.2 15.2 254 209-477 148-413 (527)
11 TIGR02339 thermosome_arch ther 100.0 2.3E-38 5E-43 396.0 30.2 255 209-477 145-412 (519)
12 cd03343 cpn60 cpn60 chaperonin 100.0 4.7E-38 1E-42 393.4 26.7 255 209-477 144-409 (517)
13 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.4E-38 1.6E-42 391.9 27.0 255 209-477 154-419 (526)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.1E-36 2.3E-41 381.6 27.3 255 209-477 138-410 (527)
15 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.1E-36 6.8E-41 377.1 27.6 249 209-477 149-411 (522)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 5E-36 1.1E-40 375.3 28.9 255 209-477 158-423 (532)
17 PTZ00212 T-complex protein 1 s 100.0 3.5E-36 7.5E-41 377.0 27.4 248 209-477 159-418 (533)
18 cd03333 chaperonin_like chaper 100.0 6.3E-36 1.4E-40 332.8 23.6 206 210-464 3-209 (209)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.4E-36 1.6E-40 373.4 26.7 254 209-477 137-408 (515)
20 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.8E-35 3.9E-40 369.5 29.3 248 209-477 147-406 (517)
21 TIGR02342 chap_CCT_delta T-com 100.0 1.5E-35 3.3E-40 370.3 27.5 254 209-477 138-409 (517)
22 TIGR02347 chap_CCT_zeta T-comp 100.0 4.8E-35 1E-39 365.9 27.5 252 209-477 146-418 (531)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.9E-35 4.2E-40 366.2 23.7 225 209-477 145-372 (480)
24 TIGR02340 chap_CCT_alpha T-com 100.0 6.2E-35 1.3E-39 366.2 28.0 255 209-477 142-414 (536)
25 TIGR02345 chap_CCT_eta T-compl 100.0 4.8E-35 1E-39 366.2 25.6 250 209-477 149-412 (522)
26 KOG0361 Chaperonin complex com 100.0 4.3E-35 9.3E-40 330.7 18.2 248 211-478 155-416 (543)
27 TIGR02341 chap_CCT_beta T-comp 100.0 2.7E-33 5.9E-38 349.8 28.4 248 209-477 148-407 (519)
28 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.7E-32 3.7E-37 340.3 24.5 233 209-477 142-375 (484)
29 cd00309 chaperonin_type_I_II c 100.0 6.6E-32 1.4E-36 334.2 24.9 221 209-477 137-358 (464)
30 TIGR02346 chap_CCT_theta T-com 100.0 1.6E-31 3.6E-36 334.7 27.4 250 209-477 149-410 (531)
31 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.9E-31 6.3E-36 329.6 26.7 249 209-477 117-377 (485)
32 KOG0358 Chaperonin complex com 100.0 1.2E-31 2.7E-36 302.5 15.3 256 208-477 154-426 (534)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.7E-30 3.7E-35 321.7 24.5 222 209-477 139-362 (472)
34 KOG0363 Chaperonin complex com 100.0 1.2E-29 2.6E-34 285.2 17.9 267 190-477 130-411 (527)
35 KOG0359 Chaperonin complex com 100.0 9.9E-30 2.1E-34 292.0 14.2 253 208-477 142-409 (520)
36 KOG0360 Chaperonin complex com 100.0 2.3E-29 4.9E-34 291.9 14.8 260 204-477 143-420 (545)
37 COG0459 GroL Chaperonin GroEL 100.0 1.3E-27 2.7E-32 296.1 25.2 243 215-477 144-406 (524)
38 KOG0362 Chaperonin complex com 99.9 1.3E-24 2.8E-29 254.5 22.1 232 227-478 171-414 (537)
39 PRK12849 groEL chaperonin GroE 99.9 3.1E-23 6.8E-28 260.0 26.3 219 210-477 142-420 (542)
40 PRK00013 groEL chaperonin GroE 99.9 1.3E-23 2.9E-28 263.3 22.8 220 210-477 142-420 (542)
41 cd03344 GroEL GroEL_like type 99.9 2E-23 4.4E-28 261.0 24.2 221 208-477 138-418 (520)
42 PTZ00114 Heat shock protein 60 99.9 6.1E-23 1.3E-27 258.4 25.9 220 209-477 153-433 (555)
43 PRK12851 groEL chaperonin GroE 99.9 6.5E-23 1.4E-27 257.3 24.1 210 226-477 153-421 (541)
44 TIGR02348 GroEL chaperonin Gro 99.9 1.3E-22 2.8E-27 254.1 25.1 220 209-477 140-419 (524)
45 PRK12850 groEL chaperonin GroE 99.9 1.3E-22 2.8E-27 254.7 22.7 221 209-477 142-421 (544)
46 PRK12852 groEL chaperonin GroE 99.9 1.7E-21 3.7E-26 245.1 25.8 220 209-477 142-421 (545)
47 CHL00093 groEL chaperonin GroE 99.9 2.2E-21 4.9E-26 243.3 20.6 221 210-477 142-420 (529)
48 PRK14104 chaperonin GroEL; Pro 99.9 1.3E-20 2.9E-25 236.6 22.0 220 209-477 142-421 (546)
49 PLN03167 Chaperonin-60 beta su 99.8 5.9E-21 1.3E-25 241.2 16.6 231 209-477 196-475 (600)
50 KOG0357 Chaperonin complex com 99.8 3.2E-19 7E-24 201.1 8.7 143 324-477 144-287 (400)
51 KOG0230 Phosphatidylinositol-4 95.6 0.0099 2.1E-07 80.3 4.5 100 719-833 658-757 (1598)
52 KOG0356 Mitochondrial chaperon 93.4 0.75 1.6E-05 57.7 13.0 218 232-477 172-435 (550)
53 PF02579 Nitro_FeMo-Co: Dinitr 52.3 34 0.00075 33.2 6.1 49 326-375 44-92 (94)
54 cd01143 YvrC Periplasmic bindi 52.2 31 0.00067 37.8 6.4 51 328-378 53-110 (195)
55 PLN02667 inositol polyphosphat 46.9 38 0.00083 40.6 6.4 69 1377-1460 24-99 (286)
56 TIGR03659 IsdE heme ABC transp 46.4 31 0.00068 40.9 5.7 52 328-379 84-141 (289)
57 cd01144 BtuF Cobalamin binding 45.7 40 0.00087 38.5 6.2 52 328-379 50-108 (245)
58 PRK09534 btuF corrinoid ABC tr 45.1 38 0.00082 41.8 6.3 53 327-379 111-170 (359)
59 PF06296 DUF1044: Protein of u 44.5 67 0.0014 33.8 6.9 77 1331-1407 2-106 (120)
60 cd00851 MTH1175 This uncharact 42.9 45 0.00098 32.9 5.3 40 325-365 53-92 (103)
61 cd01138 FeuA Periplasmic bindi 39.1 52 0.0011 37.8 5.8 51 328-379 59-113 (248)
62 cd00562 NifX_NifB This CD repr 36.4 69 0.0015 31.5 5.5 39 326-365 52-90 (102)
63 PF13324 GCIP: Grap2 and cycli 32.0 86 0.0019 37.3 6.2 12 233-244 239-250 (275)
64 PF01497 Peripla_BP_2: Peripla 31.1 85 0.0019 35.4 5.9 51 329-379 54-112 (238)
65 COG1433 Uncharacterized conser 31.1 1.2E+02 0.0026 32.0 6.3 52 326-378 56-107 (121)
66 cd01146 FhuD Fe3+-siderophore 30.9 92 0.002 35.9 6.2 52 328-379 58-115 (256)
67 PRK03379 vitamin B12-transport 27.7 92 0.002 36.4 5.5 50 328-378 65-122 (260)
68 COG1997 RPL43A Ribosomal prote 27.4 47 0.001 32.9 2.4 43 714-786 32-74 (89)
69 cd01140 FatB Siderophore bindi 25.5 1.3E+02 0.0027 35.1 6.1 52 328-379 65-123 (270)
70 PF07450 HycH: Formate hydroge 25.1 51 0.0011 35.0 2.3 22 1516-1544 24-45 (131)
71 cd01147 HemV-2 Metal binding p 24.8 85 0.0018 36.2 4.5 51 328-378 67-126 (262)
72 PF12226 Astro_capsid_p: Turke 24.6 44 0.00095 36.6 1.8 52 1328-1385 100-154 (230)
73 cd04743 NPD_PKS 2-Nitropropane 24.4 1.7E+02 0.0037 35.8 7.0 56 325-381 72-127 (320)
74 cd01139 TroA_f Periplasmic bin 24.0 1.1E+02 0.0025 36.9 5.5 52 328-379 84-148 (342)
75 cd01141 TroA_d Periplasmic bin 23.8 78 0.0017 34.7 3.7 34 328-361 62-96 (186)
76 cd00636 TroA-like Helical back 22.9 96 0.0021 31.3 4.0 35 328-362 54-88 (148)
77 PRK15084 formate hydrogenlyase 22.7 57 0.0012 34.7 2.1 22 1516-1544 26-47 (133)
78 PRK11411 fecB iron-dicitrate t 20.8 1.8E+02 0.0038 34.8 6.2 52 328-379 94-152 (303)
79 TIGR00365 monothiol glutaredox 20.2 2.5E+02 0.0054 28.1 6.1 70 326-395 3-82 (97)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-236 Score=2189.97 Aligned_cols=1320 Identities=41% Similarity=0.654 Sum_probs=961.8
Q ss_pred CCccccCCCCCCCCcccccccccCCCCccccCCCCCCccc---cCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHH
Q 000362 132 DMQIWEPPEPEDPEDDIEGSIAYNDDDEDEECGDGTKWGK---PSSLSHFRDEGGGRLKFKEEKQRAMEKVVSGKFKAIV 208 (1617)
Q Consensus 132 ~~~~w~pp~p~~~~d~~~~~~~~ddd~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~~L~~~~~~h~~~ll 208 (1617)
++.+|.||+||+|+||+|+.++|+||+++| .++.|+. +.+++.+.....+ +..+++.+.|+.+...||++++
T Consensus 239 ~~~~~~p~~pene~dd~~~~~~~~~~~~~D---~~~~~~~~~~s~s~s~~~~~~~~--~~~ee~~~~m~~~~~~~fr~~~ 313 (1598)
T KOG0230|consen 239 NGLLWEPPEPENEEDDAESVLADDDDDEGD---TSGKWNPLRLSNSFSAPEYKSKD--KSAEEDEKVMRNVVESHFRALV 313 (1598)
T ss_pred ccCCCCCCCCCcccccchhccccccccccc---cccccccccccCccCCCCccccc--cchhhcchhhhccccchHHHHH
Confidence 366899999999999999988775554433 2367866 6788887444555 6888999999999999999999
Q ss_pred HHHHHhhcccCCCC-CcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGK-DGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK-~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
.||++.+.+++.++ ...+|.++++.|+|+|+..++|+...++.|||.+|||||||+||++.||++|+||||+|+++||.
T Consensus 314 a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~ 393 (1598)
T KOG0230|consen 314 AQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKR 393 (1598)
T ss_pred HHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhh
Confidence 99999999885443 45689999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc--cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecC
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 364 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e--l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nV 364 (1617)
|++++++|||||+.|+|||+|.. |+|+++ ++||++||+.+|+||.+.+||||||+|+|+++||++|.++||+++.||
T Consensus 394 M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnv 473 (1598)
T KOG0230|consen 394 MATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNV 473 (1598)
T ss_pred hhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEec
Confidence 99999999999999999999876 999999 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHH
Q 000362 365 KLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDE 443 (1617)
Q Consensus 365 K~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~ 443 (1617)
|+..|+||||||||+|++++| ++.++||+|+.|+++++.++| +..||+|||+||++++||||||||++.++
T Consensus 474 K~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffegc~~~lG~TiLLrG~~~~e 545 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFEGCPKPLGCTILLRGDSLEE 545 (1598)
T ss_pred cHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhhcCCCCCCceEEecCCCHHH
Confidence 999999999999999999999 999999999999999999875 57899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCeeeecCCcccccCCccccc-cCCCcccccccccCCCCCCcccccCcccCCCCCcCCCC
Q 000362 444 LKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTIPFAEVA-GILPMEQQHPALENGNSNVSCFEHSSVESGSSTMDIPI 522 (1617)
Q Consensus 444 L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1617)
|++||+|++++++++||+.||++||+|.||++......... ..+++... +.+.+|..... .....+.
T Consensus 546 LkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~~~~~------~~s~~~~~t~s------t~~~a~~ 613 (1598)
T KOG0230|consen 546 LKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETSIINR------SISTSPGETDS------TAEKAPV 613 (1598)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccccccc------ccccCCCCCcc------hhcccch
Confidence 99999999999999999999999999999998864332211 11110000 00111110000 0000010
Q ss_pred CCCCcCCCCccCCCCCCCccccccCCCCCcccCccccccccccccccCCCCcccccCC-----CcccccccccccccCcc
Q 000362 523 SNGFHEDGSYANSGPEGESILSYEPYNPAVFSGFSSLSASLRKVIGDNFPLSSAAAYP-----SLTSYFGFRGREQSGQI 597 (1617)
Q Consensus 523 ~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~-----~l~~~~~~~~~~~~~~~ 597 (1617)
.....+... .. .....+.++..|. .....|....++++ .+..+.+.-...+-...
T Consensus 614 ~~~~~e~~~-~~-~~~~~~~ls~sp~------------------~~~~~~~~~i~P~~~~~e~~~~~~~~~~~~~~lv~~ 673 (1598)
T KOG0230|consen 614 EALQVEPNR-FN-GALSSELLSSSPF------------------LEFPLDLLEIAPGELVIETRLSSYSKGPKQNGLVPA 673 (1598)
T ss_pred hhhccchhh-hh-cccccceeecccc------------------cccCCCccccCCccceeecchhhhcCchhhcccccc
Confidence 000000000 00 0000111211111 11111111100110 00000000000000000
Q ss_pred ccCCCccccccccCCCCCCccCCCCcccccccCCCCCCCCCCCCCCCCCC------CCCCCCCcccCCccccCCCCCCCe
Q 000362 598 TEDVPVSTIMDASLDGPCDTEAKSSSDEEKSLDGQPTSLPSCPEAPLSMG------KDCGNDEDHSQSQEDANASLDSQS 671 (1617)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~p~~HQs 671 (1617)
.+... ..++.. ..+....+.+...... .......+.... ++..-.+-+.+..++.++|.+||+
T Consensus 674 ~es~~-~~~~~s---~~~~~~~l~e~~~~~~-------~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~~~~HQs 742 (1598)
T KOG0230|consen 674 HESVL-NDLHES---TLSILSKLPETRSGTH-------EGNEDKGPGLEPELANNQNIQRPEETEEQSSKDALDPSSHQS 742 (1598)
T ss_pred ccccc-cccccc---cccccccccchhcccc-------hhccccCccccccccccccccchhhhhhhhcccCCCccccce
Confidence 00000 001100 0000000110000000 000000000000 000000111126678999999999
Q ss_pred EEEEEeeecCCCCCccCCccEEEEeccCCCCccHHHHHHHHhhccCCCCCCCCCChhcccceeeecCcEEEEEEEecCcc
Q 000362 672 ILVLMSSRNALRGTICEQSHFSHIMFYKNFDVPLGKFLQDNLLNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDR 751 (1617)
Q Consensus 672 I~VL~Ss~~~~~~~pC~~P~l~~I~fY~~~D~tLGqFLe~~~~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~ve~~~~~ 751 (1617)
|+||||++|.+++.+|++|||++|+|||.+|++|||||+++||+++|.|++|.+||++|+|||||++|+++|.|++++..
T Consensus 743 ilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~ 822 (1598)
T KOG0230|consen 743 ILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL 822 (1598)
T ss_pred eEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEecccccccccHHHHHhhhcCCCCCCCCCCCCCCCccccceeecccCC
Q 000362 752 IRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGP 831 (1617)
Q Consensus 752 ~~lpge~~~~I~MWs~Ck~C~~~~g~~~~Tp~v~MSd~tw~~SFGKfLEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~ 831 (1617)
+||+.+|+|||||||++|++. ||+|++|+||++||++||||||||+||+|+++.|++.|||+||||||||||||+
T Consensus 823 --l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~ 897 (1598)
T KOG0230|consen 823 --LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGN 897 (1598)
T ss_pred --cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCC
Confidence 899999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeeeeeEEecCCceeEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHH
Q 000362 832 MVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSE 911 (1617)
Q Consensus 832 ~Va~f~YspI~v~ev~~Pp~~l~~~~~~~~~~~~e~~~v~~k~~~~~~~V~~rL~~ik~~~~~~~~~~~~~~~~i~eL~~ 911 (1617)
|||+|+|++|++|+|++||.+|+|++..++|+++|+++|+.||+.+|++|.++|.+|+.+-+ . ...+.+|+.
T Consensus 898 mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~~----~----~~~i~~l~~ 969 (1598)
T KOG0230|consen 898 MVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKDE----N----RPLIQELKE 969 (1598)
T ss_pred ceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----c----cchhhhhhh
Confidence 99999999999999999999999994444999999999999999999999999999998621 1 357899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhhHhHHHHHHHHHHHHhhhhhHHhhhccCCCCcc-cccCCCCCCCCCcccccc
Q 000362 912 ILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTV-VITGATEKPGPEQTKVKM 990 (1617)
Q Consensus 912 ~l~~e~~~~~~~l~~~~~~~~~~~~~~~~il~lN~l~r~L~~~~~~Wd~rl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 990 (1617)
+|.+|+.+|++.|+.++.+.....+..+++|.||+++|.|...++.||.||+.+....+.. ..+.+.++. ++.
T Consensus 970 ~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~~--~~~---- 1043 (1598)
T KOG0230|consen 970 LLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLKLESSKDTKPKES--ETN---- 1043 (1598)
T ss_pred hhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhccccccccccccc--ccc----
Confidence 9999999999999999998877788899999999999999999999999998765432200 000000110 100
Q ss_pred cCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCcccccchhhhhhcccCCCCCCCCcCccccc-------cccc----cc
Q 000362 991 DGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHK-------KTTV----LK 1059 (1617)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~ 1059 (1617)
.+ ......+++......++.....+......+...++.... +...+.... +..+ ..
T Consensus 1044 -~~-~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp~~~~-----------s~~~d~~~~~~~~~~~~~~s~~~~~~ 1110 (1598)
T KOG0230|consen 1044 -ST-AKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLPLPED-----------SNSTDTGLSGPSEVLEDNESIDEMLG 1110 (1598)
T ss_pred -Cc-cccccCchhhccccccccccccccccCccccccCCCCCc-----------ccccchhccCcccccccccchhhccc
Confidence 00 000000111000000000000000000000000000000 000000000 0000 00
Q ss_pred cccccccc-CCCCCCccccccccccCCCCCCCCCCCccccccccccccccccccCCCcccCCCCCccCCCCCCCCCccCc
Q 000362 1060 DVETSIAS-DLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKNETSTHS 1138 (1617)
Q Consensus 1060 ~~e~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~ 1138 (1617)
.+....+. ....+++.+..+.+|. ..+..|........+...+.. +.....
T Consensus 1111 ~v~n~~s~~~~~~~~~~~~l~~~~~------------------------g~r~~~~~~P~s~~~~~~~~~--~~~~~~-- 1162 (1598)
T KOG0230|consen 1111 SVRNTYSLANKVRKILKQILDSATI------------------------GNRANPKSSPFSGQDHSTDLP--LESNPI-- 1162 (1598)
T ss_pred ccccccchhhHHHHHHHHhcccccc------------------------cccccCCCCCCchhhhccccc--cccCCc--
Confidence 00000000 0000000011111110 001111000000000000000 000000
Q ss_pred ccchh-hhccccccCchHHHHH-HHHHhhccCCCCCccccccCCCCCCCchhhhhhccCCcccccCCCCCceeEeecCCc
Q 000362 1139 LLSDL-EKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGEL 1216 (1617)
Q Consensus 1139 ~~~~~-~~~~~~~~~p~~~~~~-~~~~~~~~~~~~k~~~v~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~v~V~edEp 1216 (1617)
... .+...|++.||..+.. .+.++.+... ++........|.+++.-.....+.++|+.+|++.++.+|+||||||
T Consensus 1163 --~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns-~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp 1239 (1598)
T KOG0230|consen 1163 --HVLEKELSSWIEDPLTNMYYREATKELSLNS-QKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPP 1239 (1598)
T ss_pred --cccccccHHHHhhhhhhHhHHHHHHHHHhhc-chhhcccccCCcCcccccccccccccceeccccCCcccCCcccCCC
Confidence 011 1445799999988865 5544443322 1211122233444333223334677899999999999999999999
Q ss_pred hhhhHhhhccccCCccccccccCCCCCCCccccccccccccccc-Ccccc-ccccCCCCCCCCcccccccccCCcccccc
Q 000362 1217 SSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTR-IPTMA-SSLWSVNGSSDSDSIYASLSISSEDSRFS 1294 (1617)
Q Consensus 1217 SSiIA~aL~s~ey~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~-ss~~s~~~~~~s~~~~~~~s~~~~d~~~~ 1294 (1617)
+|+|||||++.+|..+... . +.. ..-+.+.+.. ..... ...|... +.+... +. .+
T Consensus 1240 ~s~ia~al~s~~~~~q~~~----p-----~~s--is~~~S~~~~~~s~~~e~~~~~~~-sl~~s~------l~-----~s 1296 (1598)
T KOG0230|consen 1240 PSLIAYALSSKERINQESS----P-----GLS--ISFSLSNLQGRLSKISEFDDTKSE-SLDNSG------LE-----SS 1296 (1598)
T ss_pred chhhhhhhcchhhccCCCC----C-----Ccc--ccccccccccchhhhhhhhhhhhc-cccccc------cc-----hh
Confidence 9999999999888765431 0 000 0000000000 00000 0000000 000000 00 00
Q ss_pred ccccccccccCCCCCCCCCceeeeccccCCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCCCCCCCcceeEE
Q 000362 1295 SFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFV 1374 (1617)
Q Consensus 1295 ~~d~~~~l~s~~~~e~~~~~v~~~~~f~~~~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~~~~sgGKSgs~F~ 1374 (1617)
.+ ..++.++++. ++..+++.++|++|+.+|+|++|||++|++||+.||+++++||+||+||.+|.++||||||+|+
T Consensus 1297 ~~---~~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~F~ 1372 (1598)
T KOG0230|consen 1297 SY---RRGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGKSGSFFA 1372 (1598)
T ss_pred hh---cchhhccccc-cccccceeeeccCCceEEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCcccceee
Confidence 01 1223333332 4556889999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCCCccc
Q 000362 1375 KTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNIT 1454 (1617)
Q Consensus 1375 ~T~D~rFIiKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~~i~ 1454 (1617)
||.|+|||||+|++.|+++|++|||+||+||.+++++..||+||||||+|||.+|++++|++.||++||||||||+++++
T Consensus 1373 KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLfY~r~vs 1452 (1598)
T KOG0230|consen 1373 KTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLFYGRKVS 1452 (1598)
T ss_pred ccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCccccccccCCCCCCccccchhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccceEEeecCCceE
Q 000362 1455 RQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRREL 1534 (1617)
Q Consensus 1455 ~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l 1534 (1617)
|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|+.|.++|||||.||+++||||||||||||+++++|
T Consensus 1453 RifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~~EL 1532 (1598)
T KOG0230|consen 1453 RIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVDDENNEL 1532 (1598)
T ss_pred eeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEeeCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccCchhhHHHHHhhhc--CCCCCCCcccChhHHHHHHHHHHhhhcccCCCCCCCCC
Q 000362 1535 VCGIIDYLRQYTWDKHLETWVKSSL--VPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPE 1597 (1617)
Q Consensus 1535 ~vGIID~L~~yt~~KklE~~~K~~~--~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~~vpd~W~~~~ 1597 (1617)
|+||||||||||||||||+|||..| .|+|..||||+|++|++||++||++|||+|||+|++++
T Consensus 1533 vlGIIDfiRtYTWDKkLESWVK~sGl~gpk~~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg~g 1597 (1598)
T KOG0230|consen 1533 VLGIIDFIRTYTWDKKLESWVKSSGLGGPKNKQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTGLG 1597 (1598)
T ss_pred EEEehHhhhhhhhhhhhhhheeccccccCCCCCCceeCHHHHHHHHHHHHhheeeecCCcccCCC
Confidence 9999999999999999999999998 48899999999999999999999999999999999876
No 2
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=8.8e-68 Score=614.48 Aligned_cols=256 Identities=42% Similarity=0.717 Sum_probs=239.0
Q ss_pred CCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCCCC-CCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000362 1324 GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAK-GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1402 (1617)
Q Consensus 1324 ~~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~~~~s-gGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1402 (1617)
....|+|++|+|.+|++||++||+++++|+.||++|..|..+ +|||||+||+|.|+|||||||+++|+++|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999989865 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCC-CcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccc
Q 000362 1403 KYMNESFDSGN-QTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVL 1478 (1617)
Q Consensus 1403 ~yi~~~~~~~~-~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl 1478 (1617)
+||.+ || +|||+||||+|+|++++ |...+++||||+|||++ ..|+++||||||+++|.++.. .....||
T Consensus 133 ~~~~~----n~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQ----NPQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHh----CCCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 99998 78 99999999999998754 22357899999999998 789999999999999999763 3457899
Q ss_pred cchhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccceEEeecCCceEEEEEEEeeeccCchhhHHHHHhhh
Q 000362 1479 LDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSS 1558 (1617)
Q Consensus 1479 ~D~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l~vGIID~L~~yt~~KklE~~~K~~ 1558 (1617)
||.||++.. ..+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|++
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~ 284 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL 284 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh
Confidence 999999976 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000362 1559 LVPKNVLPTVISPKDYKRRFRKFMSTHFL 1587 (1617)
Q Consensus 1559 ~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1587 (1617)
..+.+..||||+|++|++||++||++||+
T Consensus 285 ~~~~~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 GHDGGKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ccCCCCCcceECHHHHHHHHHHHHHHhcC
Confidence 76554679999999999999999999995
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-68 Score=618.76 Aligned_cols=359 Identities=33% Similarity=0.445 Sum_probs=291.5
Q ss_pred CCceeEeecCCchhhhHhhhccccCCccccccccCCCCCCCcccccccccccccccCccccccccCCCCCCCCccccccc
Q 000362 1205 ENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASL 1284 (1617)
Q Consensus 1205 ~~~~v~V~edEpSSiIA~aL~s~ey~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ss~~s~~~~~~s~~~~~~~ 1284 (1617)
.+..|+++++||||.|||+|+++||+.++...+.... +++..-.... .+.+ +..+..
T Consensus 242 s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~---------~De~~l~~~~----le~g----------h~n~~~ 298 (612)
T COG5253 242 SDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSET---------MDERLLNGMP----LEGG----------HRNPQE 298 (612)
T ss_pred CccccccccCCcchhhhccccchhHHHHHHhhhhhhc---------chhhhccccc----cccc----------cccchh
Confidence 4566789999999999999999999987753321110 0000000000 0000 000000
Q ss_pred ccCCccccccccccccccccCCCCCCCCCceeeeccccCCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCCC
Q 000362 1285 SISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA 1364 (1617)
Q Consensus 1285 s~~~~d~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~f~~~~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~~~~ 1364 (1617)
+..- . ...-+.++..+.+|.++- -++.+++|..|...|+|++|+|++|+.||++||+++. |+.++++|..|..
T Consensus 299 synm--l-tgirvtlsr~e~iM~~~t---dth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~ 371 (612)
T COG5253 299 SYNM--L-TGIRVTLSRIEEIMIKKT---DTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWES 371 (612)
T ss_pred hhhh--h-hhhHHHHHHHHHHhcCCc---CccchhhccccceeeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheecc
Confidence 0000 0 000011223444554431 2456778999999999999999999999999999885 9999999999999
Q ss_pred CCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeecc-CCCCcceeEEEEE
Q 000362 1365 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQ-PKSGKEMRHDLMV 1443 (1617)
Q Consensus 1365 sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~ki~Gly~i~~k~-~~~g~~~k~~~iV 1443 (1617)
.|||||||||||.|.|||||||++.|+..|..++-+|+.|+.. ||.|+||||||+|+|+++. ..+++..|+||||
T Consensus 372 ~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiV 447 (612)
T COG5253 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIV 447 (612)
T ss_pred CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEeccccccccccceeEEEE
Confidence 9999999999999999999999999995555555555555554 7889999999999999887 4567888999999
Q ss_pred EeeccCCCccceeeeccCccccccccCCCCCCccccchhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccc
Q 000362 1444 MENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSL 1523 (1617)
Q Consensus 1444 MeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSL 1523 (1617)
||||||++.|+++|||||||+||++..++....||+|.|.++.++++|+.+....|+.|+.|||+|+.||+++|||||||
T Consensus 448 MeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSl 527 (612)
T COG5253 448 MENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSL 527 (612)
T ss_pred ecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred eEEeecCCceEEEE-EEEeeec-cCchhhHHHHHhhhcC----CCCCCCcccChhHHHHHHHHHHhhhcccCCCCCCCCC
Q 000362 1524 LVGVDSQRRELVCG-IIDYLRQ-YTWDKHLETWVKSSLV----PKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPE 1597 (1617)
Q Consensus 1524 LvGi~~~~~~l~vG-IID~L~~-yt~~KklE~~~K~~~~----~~~~~~Tvv~P~~Y~~RF~~~m~~yf~~vpd~W~~~~ 1597 (1617)
|||||..+.+..|| |||++|+ |||||++|.|+|..+. -+...||+|+|.+|++||++||+.|++.+|+.|++.+
T Consensus 528 lVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 528 LVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred EEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhcccchhhhcc
Confidence 99999999999999 9999999 9999999999999882 2446899999999999999999999999999999875
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=2.4e-66 Score=609.68 Aligned_cols=259 Identities=38% Similarity=0.623 Sum_probs=238.6
Q ss_pred ccccCCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCc-CCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHH
Q 000362 1319 ISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRN-WDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKF 1397 (1617)
Q Consensus 1319 ~~f~~~~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~-~~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~ 1397 (1617)
..++....+|+|++|+|++|++||++||+++++|++||++|.. |..+||||||+||+|.|+|||||||++.|++.|+++
T Consensus 21 ~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~ 100 (342)
T smart00330 21 LTPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPM 100 (342)
T ss_pred ccCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccC-CCccceeeeccCccccccccC-CCCCC
Q 000362 1398 ALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTF-ERNITRQYDLKGALHARYNTT-VDGSG 1475 (1617)
Q Consensus 1398 lp~Yf~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~~~-~~~~~ 1475 (1617)
||.||+||.+ ||+|||+||||+|+|+++ +|+..+++||||+|||+ +.+|+++||||||+++|.+.. .....
T Consensus 101 lp~Y~~~~~~----n~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~~~~~~~~~ 173 (342)
T smart00330 101 LPNYYEHIVQ----NPNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREADKKKVKEL 173 (342)
T ss_pred HHHHHHHHHh----CCCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCcCccccCCC
Confidence 9999999997 799999999999999874 34456799999999999 589999999999999999865 33456
Q ss_pred ccccchhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccceEEeecCCc-----------------------
Q 000362 1476 DVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRR----------------------- 1532 (1617)
Q Consensus 1476 ~vl~D~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~----------------------- 1532 (1617)
.||||.||++. +..+|+|+++.|..|++||++||.||+++||||||||||||..+.
T Consensus 174 ~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T smart00330 174 PVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSDESPSSESS 252 (342)
T ss_pred Ccccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhccccccccccccccccccc
Confidence 89999999987 567999999999999999999999999999999999999986432
Q ss_pred -------------------------------------eEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHH
Q 000362 1533 -------------------------------------ELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYK 1575 (1617)
Q Consensus 1533 -------------------------------------~l~vGIID~L~~yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~ 1575 (1617)
+|+||||||||+|||+||+|||+|+...+ +..||||+|++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~~-~~~iS~V~P~~Y~ 331 (342)
T smart00330 253 NGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGHD-GKTISVVHPEQYA 331 (342)
T ss_pred ccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhccC-CCCcceECHHHHH
Confidence 89999999999999999999999998654 4579999999999
Q ss_pred HHHHHHHhhhc
Q 000362 1576 RRFRKFMSTHF 1586 (1617)
Q Consensus 1576 ~RF~~~m~~yf 1586 (1617)
+||++||++||
T Consensus 332 ~RF~~fi~~~F 342 (342)
T smart00330 332 KRFRDFMDKYF 342 (342)
T ss_pred HHHHHHHHhhC
Confidence 99999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-58 Score=532.28 Aligned_cols=252 Identities=35% Similarity=0.525 Sum_probs=227.2
Q ss_pred CCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCC--CCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000362 1325 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD--AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1402 (1617)
Q Consensus 1325 ~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~~~--~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1402 (1617)
...|.+|+|+|.+|+.||++|||++++|+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999877655 777999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCCC-ccceeeeccCccccccccCCC--CCCcccc
Q 000362 1403 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLL 1479 (1617)
Q Consensus 1403 ~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~ 1479 (1617)
+|+.+. ++.|||+||||+|+|+. .+|+ +++||||+|||..+ .||++||||||+++|.+...+ ++..+||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~---~gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKP---DGGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEee---CCCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999984 66699999999999976 3554 57999999999985 999999999999999997633 4578999
Q ss_pred chhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccceEEeecC-----------------------------
Q 000362 1480 DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ----------------------------- 1530 (1617)
Q Consensus 1480 D~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~----------------------------- 1530 (1617)
|.||++. ...|+|++..++.|++||++||.||++++|||||||||||..
T Consensus 247 DlDf~~~--~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (420)
T KOG0229|consen 247 DLDFLNE--GQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPE 324 (420)
T ss_pred cchhhcc--CceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccc
Confidence 9999983 358999999999999999999999999999999999999741
Q ss_pred ----------------------------------------CceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccC
Q 000362 1531 ----------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVIS 1570 (1617)
Q Consensus 1531 ----------------------------------------~~~l~vGIID~L~~yt~~KklE~~~K~~~~~~~~~~Tvv~ 1570 (1617)
+.+||+||||+||.|+..||+||.+|++..+. ..+|+|+
T Consensus 325 ~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl~~d~-~tIS~v~ 403 (420)
T KOG0229|consen 325 DVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSLQHDP-DTISAVD 403 (420)
T ss_pred ccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhhccCC-ceeeccC
Confidence 12589999999999999999999999986433 5689999
Q ss_pred hhHHHHHHHHHHhhhcc
Q 000362 1571 PKDYKRRFRKFMSTHFL 1587 (1617)
Q Consensus 1571 P~~Y~~RF~~~m~~yf~ 1587 (1617)
|++|++||++||.+.|.
T Consensus 404 P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 404 PKFYAKRFLDFISNIFF 420 (420)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999873
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=2e-56 Score=509.12 Aligned_cols=222 Identities=36% Similarity=0.583 Sum_probs=156.2
Q ss_pred HhccC--CcCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeeccCC
Q 000362 1355 SLSRC--RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPK 1432 (1617)
Q Consensus 1355 SLs~~--~~~~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~ 1432 (1617)
||+.+ ..|..++|||||+||+|.|+|||||||+++|+++|+++||+||+||.+ ||.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheeccc---
Confidence 66543 568899999999999999999999999999999999999999999999 799999999999999432
Q ss_pred CCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccccchhhhhhcCCCCcccCHHHHHHHHHHHHhh
Q 000362 1433 SGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWND 1509 (1617)
Q Consensus 1433 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~pi~l~~~~k~~L~~~l~~D 1509 (1617)
+| ..+++||||+|+|++ ..|+++||||||+++|.+... .....|+||.||.+.. .+|+|+++.+..|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 457899999999999 899999999999999998752 2357899999999864 59999999999999999999
Q ss_pred hhccccCCcccccceEEee------------------------cCCceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCC
Q 000362 1510 TTFLNSIDVMDYSLLVGVD------------------------SQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVL 1565 (1617)
Q Consensus 1510 t~FL~~~nvMDYSLLvGi~------------------------~~~~~l~vGIID~L~~yt~~KklE~~~K~~~~~~~~~ 1565 (1617)
|.||+++|||||||||||+ ..+.+|++|||||||+|||.|++|+|+|+.+..++..
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~~~~ 231 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCDGQD 231 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT------------------S
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999 4568899999999999999999999999995333567
Q ss_pred CcccChhHHHHHHHHHHhhhc
Q 000362 1566 PTVISPKDYKRRFRKFMSTHF 1586 (1617)
Q Consensus 1566 ~Tvv~P~~Y~~RF~~~m~~yf 1586 (1617)
+|||+|++|++||++||++||
T Consensus 232 iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 232 ISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp SS---HHHHHHHHHHHHHHH-
T ss_pred CcccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999997
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=4.2e-55 Score=548.60 Aligned_cols=248 Identities=28% Similarity=0.433 Sum_probs=221.8
Q ss_pred CCceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcC--CCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000362 1325 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW--DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1402 (1617)
Q Consensus 1325 ~~~~~~~~y~p~~F~~LR~~~~i~e~~yi~SLs~~~~~--~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1402 (1617)
...|+|++|+|.+|+.||++|||++++|+.||+.+..| .+++|||||+||+|.|+|||||||+++|+++|++|||+||
T Consensus 401 ~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 401 SEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred cCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999876544 5799999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCCC-CCCccccc
Q 000362 1403 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTVD-GSGDVLLD 1480 (1617)
Q Consensus 1403 ~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~~-~~~~vl~D 1480 (1617)
+||.. ||+|||+||||+|+|+.. +|+ +++||||+|||++ ..|+++||||||+++|.+...+ ..+.||||
T Consensus 481 ~hv~~----n~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~~~~~tlKD 551 (765)
T PLN03185 481 HHVKT----YENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKD 551 (765)
T ss_pred HHHhh----CCCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCCCCCCCCccccccCCCeeee
Confidence 99987 799999999999999653 343 5799999999997 5899999999999999985432 35678999
Q ss_pred hhhhhhcCCCCcccCHHHHHHHHHHHHhhhhccccCCcccccceEEeecCC-----------------------------
Q 000362 1481 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR----------------------------- 1531 (1617)
Q Consensus 1481 ~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~----------------------------- 1531 (1617)
.||. .+|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 552 lD~~-----~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (765)
T PLN03185 552 LDLN-----YSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSRSITADGLEVVAEEDTIE 626 (765)
T ss_pred cCcC-----ceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhccccccccccccccccccccccccc
Confidence 9983 368999999999999999999999999999999999998310
Q ss_pred --------------------------------------------------------------------------------
Q 000362 1532 -------------------------------------------------------------------------------- 1531 (1617)
Q Consensus 1532 -------------------------------------------------------------------------------- 1531 (1617)
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpara~~~~~~~~~~~~~~~ 706 (765)
T PLN03185 627 DEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFH 706 (765)
T ss_pred ccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCchhhhcccccccccccccC
Confidence
Q ss_pred ----ceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000362 1532 ----RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1587 (1617)
Q Consensus 1532 ----~~l~vGIID~L~~yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1587 (1617)
-+||+|||||||.|+..|||||.+|++... ...+|+|+|+.|++||++||.+.|+
T Consensus 707 e~~d~~~~~giidilq~y~~~k~~eh~~k~~~~~-~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 707 EVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFD-SLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred cccceEEEEEEEEeecccchhHHHHHHHhhhccC-CCceeccChHHHHHHHHHHHHhhcC
Confidence 137899999999999999999999998543 3468999999999999999999984
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=5.9e-48 Score=442.25 Aligned_cols=255 Identities=49% Similarity=0.835 Sum_probs=237.4
Q ss_pred HHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCC
Q 000362 206 AIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH 285 (1617)
Q Consensus 206 ~ll~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvah 285 (1617)
+++.|||.++++. ....|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~ 77 (261)
T cd03334 2 ALLAQLLKDEGIS----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAH 77 (261)
T ss_pred hHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCC
Confidence 6889999999993 467899999999999999997654334579997789999999999999999999999999999
Q ss_pred CCCCccccCCcEEEEeeecccCccc--cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEee
Q 000362 286 KHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 362 (1617)
Q Consensus 286 k~M~~~i~nPrIlLL~~~LEy~r~e--l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~ 362 (1617)
++||++++|||||||+|+|||++++ +.+++. +++|++|++++|++|+++|||||||+|+|+++|++||.++||++++
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999876 778999 9999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhCCceecccc--CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCC
Q 000362 363 DMKLHRLERVARCTGSPILSSGS--LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSN 440 (1617)
Q Consensus 363 nVK~~~LeRIaR~TGA~IisSid--L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s 440 (1617)
+|++.+|+|||+||||.|+++++ ++++.||+|+.|++++++.+. +++++|+||+||+.+.+|||+|||++
T Consensus 158 ~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~--------~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred ecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC--------CCceeEEEEecCCCCceeEEEEECCC
Confidence 99999999999999999999954 889999999999999986421 24589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeeecCC
Q 000362 441 SDELKRIKSVVQCAVVMAYHLILETSFLVDQR 472 (1617)
Q Consensus 441 ~~~L~evKrvl~dav~v~~~l~lE~s~l~g~G 472 (1617)
.++|+++||+++||++++||+.+|.++++|.+
T Consensus 230 ~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 230 LEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 99999999999999999999999999998864
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-41 Score=419.55 Aligned_cols=256 Identities=24% Similarity=0.425 Sum_probs=240.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCC-CCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVD-GKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~-g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
..|++.+.+++++|...+|.+.|++|+++|+..+.++... +..+|+++||+|+|++||++.||++|+|++|+|+++|++
T Consensus 145 ~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~ 224 (525)
T TIGR02344 145 AAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK 224 (525)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC
Confidence 3467788888999999999999999999999999886422 347899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc------c---CcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e------l---~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
|+++++||||||++++|||++++ + .++++ +++|++|++++|++|++.||+||+|+|+|+++|+++|.++|
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~ 304 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC
Confidence 99999999999999999999876 2 35778 89999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEE
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 435 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTIL 435 (1617)
|++++++++.+|+|||+||||+++++++ +.+..||+ |+.|++++++. ++|++|+||..+.+|||+
T Consensus 305 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIl 371 (525)
T TIGR02344 305 ISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTIL 371 (525)
T ss_pred ceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 9999999999999999999999999999 99899999 99999999753 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 436 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 436 LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|||++..+|+|+||+++||++++++++.++.+|+||||+|..
T Consensus 372 LrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ 413 (525)
T TIGR02344 372 LRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMA 413 (525)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHH
Confidence 999999999999999999999999999999999999999875
No 10
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=376.20 Aligned_cols=254 Identities=23% Similarity=0.435 Sum_probs=240.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
.+++...+.+..+|....|.+.++.|+++|+..|..+ .|..+|+..|+||.|||||.+.+|++++||.+.|.+.|.+|
T Consensus 148 ~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm 225 (527)
T KOG0364|consen 148 AKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM 225 (527)
T ss_pred HHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHH
Confidence 4577778888889999999999999999999999876 45589999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc---------cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e---------l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 358 (1617)
.+.|+||||.||+|||||.+-+ -.+|.. ++-|+||++.++..|+.++||||++||+||++|++||.++||
T Consensus 226 rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i 305 (527)
T KOG0364|consen 226 RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (527)
T ss_pred HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc
Confidence 9999999999999999998865 236788 999999999999999999999999999999999999999999
Q ss_pred eEeecCChHHHHHHHHHhCCceecccc-CCCCCcc-ccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEE
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLK-HCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 359 tvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG-~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 436 (1617)
++++++++.+..||||++||.|++..+ |.+...| -|+.|+++++++ ..|.||..|..|+.|||||
T Consensus 306 T~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCtill 372 (527)
T KOG0364|consen 306 TAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACTILL 372 (527)
T ss_pred hhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceEEEe
Confidence 999999999999999999999999999 9999999 599999999876 4899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||++.++|.|++|.++||+.+++|..+++++++||||+|+.
T Consensus 373 rg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMA 413 (527)
T KOG0364|consen 373 RGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMA 413 (527)
T ss_pred ccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHH
Confidence 99999999999999999999999999999999999999985
No 11
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.3e-38 Score=396.04 Aligned_cols=255 Identities=25% Similarity=0.374 Sum_probs=237.8
Q ss_pred HHHHHhhcccCCCCCc-chHHHHHHHHHHHHHHhcCCCCCCCC-ccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC
Q 000362 209 SQLLKSVGVVSSGKDG-ESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 286 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~-~~w~~~ls~L~~eAv~~V~pd~~~g~-~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk 286 (1617)
..|++.+.+++++|.. +.|.+.|++|+++|+..+.+....|. .+|+ ++|+|+|++||++.||++++|++|++++.|+
T Consensus 145 ~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~ 223 (519)
T TIGR02339 145 DLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHP 223 (519)
T ss_pred HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCC
Confidence 5578889999999988 79999999999999999975321232 5788 5999999999999999999999999999999
Q ss_pred CCCccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHc
Q 000362 287 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 356 (1617)
Q Consensus 287 ~M~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~ 356 (1617)
+|+++++||||+|++++|||++++ +. ++.+ +++|++|++++|++|++.||+||+++++|++.|++||.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 999999999999999999999887 33 4677 8999999999999999999999999999999999999999
Q ss_pred CCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEE
Q 000362 357 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 435 (1617)
Q Consensus 357 gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTIL 435 (1617)
||++++++++.+|+|||++|||+++++++ +.+..||+|+.|++++++. ++|++|+||..+.+|||+
T Consensus 304 gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~ 370 (519)
T TIGR02339 304 GILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTIL 370 (519)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 99999999999999999999999999999 9989999999999999753 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 436 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 436 LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|||++..+|+|+||+++||++++++++.++++|+||||+|..
T Consensus 371 lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ 412 (519)
T TIGR02339 371 LRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIE 412 (519)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHH
Confidence 999999999999999999999999999999999999999976
No 12
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.7e-38 Score=393.37 Aligned_cols=255 Identities=24% Similarity=0.367 Sum_probs=238.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+.++......+|+ ++|+|+|++||+++||++++|+||++++.|+.|
T Consensus 144 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m 222 (517)
T cd03343 144 DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM 222 (517)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCC
Confidence 4577888999999999999999999999999999764222236888 699999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 358 (1617)
++.++||||+|++++|||++.+ +. ++++ +++|++|++++|++|++.|++||+++++|++.|++||.++||
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 9999999999999999999887 33 3777 899999999999999999999999999999999999999999
Q ss_pred eEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEe
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 437 (1617)
Q Consensus 359 tvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLR 437 (1617)
++++++++.+|+|||++|||+++++++ +++..||+|+.|++++++. ++|++|+||..+.+|||+||
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lr 369 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLR 369 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEE
Confidence 999999999999999999999999999 9999999999999999753 68999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 438 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 438 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|++..+|+|+||.++||++++++++.++++++|||++|..
T Consensus 370 G~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ 409 (517)
T cd03343 370 GGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIE 409 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHH
Confidence 9999999999999999999999999999999999999875
No 13
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-38 Score=391.93 Aligned_cols=255 Identities=19% Similarity=0.302 Sum_probs=237.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|+.++++|+..+... ++..+|+ ++|+|+|++||++.||++++|++|+++++|+.|
T Consensus 154 ~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m 230 (526)
T cd03339 154 EPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM 230 (526)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCC
Confidence 4578889999999999999999999999999998642 2335677 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 358 (1617)
+++++||||+|++++|||.+.+ +. +++. +++|++|++.++++|++.|++||+++++|++.|++||.++||
T Consensus 231 ~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I 310 (526)
T cd03339 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGL 310 (526)
T ss_pred CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 9999999999999999999865 33 3667 899999999999999999999999999999999999999999
Q ss_pred eEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEe
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 437 (1617)
Q Consensus 359 tvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLR 437 (1617)
++++++++.+|+|||++|||.++++++ +++..||+|+.|+++.|+. ..++|+||+||+.+.+|||+||
T Consensus 311 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-----------~~~~~~~i~g~~~~~~~TIllr 379 (526)
T cd03339 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT-----------TKDKMLVIEGCPNSKAVTIFIR 379 (526)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC-----------CCcEEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 9999999999999999753 2479999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 438 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 438 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|++..+|+|+||+++||++++++++.+.++|+||||+|..
T Consensus 380 G~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 380 GGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999876
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-36 Score=381.59 Aligned_cols=255 Identities=19% Similarity=0.251 Sum_probs=233.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
..|++.+.+++++|....|.+.|++|+++|+..++.....| ..+|+ ++|+|++++||++.+|++++|++|+++++|++
T Consensus 138 ~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~ 216 (527)
T cd03335 138 ESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQG 216 (527)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence 34778889999999999999999999999999996421222 24788 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc---------CcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~el---------~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
||++++||||||++++|++.+.++ ..++. .++|+++++.++++|++.|++|||++++|++.|++||.++|
T Consensus 217 m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~ 296 (527)
T cd03335 217 MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG 296 (527)
T ss_pred CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988762 35777 79999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CC------CCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCc
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 430 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~------~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~ 430 (1617)
|++++++++.+|+|||++|||+++++++ ++ +..||+|+.|+++++++ ++|++|+||..+.
T Consensus 297 I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~ 363 (527)
T cd03335 297 AMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRS 363 (527)
T ss_pred cEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 53 34799999999999753 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+|||+|||+|..+|+|+||+++||++++++++.++++|+||||+|..
T Consensus 364 ~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 410 (527)
T cd03335 364 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 410 (527)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 15
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-36 Score=377.14 Aligned_cols=249 Identities=23% Similarity=0.350 Sum_probs=231.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC--
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 286 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk-- 286 (1617)
..|++.+.+++++|....|.+.|++|+++|+..+.+ ..|+ ++|+|+|++||++.||++++|+||++++++.
T Consensus 149 ~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~ 221 (522)
T cd03340 149 ELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGF 221 (522)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCcccc
Confidence 337788899999999999999999999999999965 2466 6999999999999999999999999999865
Q ss_pred -CCCccccCCcEEEEeeecccCccc------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHH
Q 000362 287 -HMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 355 (1617)
Q Consensus 287 -~M~~~i~nPrIlLL~~~LEy~r~e------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~ 355 (1617)
.||++++||||||++++||+.+.+ +.+ ++. +++|++++.+++++|++.|++||+++++|++.|++||.+
T Consensus 222 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~ 301 (522)
T cd03340 222 EQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD 301 (522)
T ss_pred ccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH
Confidence 469999999999999999998764 344 666 799999999999999999999999999999999999999
Q ss_pred cCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEE
Q 000362 356 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 434 (1617)
Q Consensus 356 ~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTI 434 (1617)
+||+++.+|++.+|+|||++|||+++++++ +++..||+|+.|++++++ .++|++|+||+.+.+|||
T Consensus 302 ~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI 368 (522)
T cd03340 302 RDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVG-------------GERYNIFTGCPKAKTCTI 368 (522)
T ss_pred CCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEEC-------------CEEEEEEECCCCCceEEE
Confidence 999999999999999999999999999999 999999999999998874 268999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 435 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 435 LLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||||++..+|+|+||+++||++++++++.++.+|+|||++|..
T Consensus 369 llrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ 411 (522)
T cd03340 369 ILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEME 411 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999875
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5e-36 Score=375.31 Aligned_cols=255 Identities=20% Similarity=0.296 Sum_probs=236.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|..|
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 4578888999999998899999999999999999642 2236888 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 358 (1617)
|+.++||||+|++++||+.+.+ +.+ ++. +++|+++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 9999999999999999999875 333 566 899999999999999999999999999999999999999999
Q ss_pred eEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEe
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 437 (1617)
Q Consensus 359 tvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLR 437 (1617)
.++++++..+|+|||++|||.++++++ +++..||+|+.|+++.++.. .+++++|+||+.+..|||+||
T Consensus 315 ~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllr 383 (532)
T TIGR02343 315 PAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIR 383 (532)
T ss_pred EEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 99999999999999998541 258999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 438 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 438 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|+|..+|+|+||+++||++++++++.++.+|+||||+|..
T Consensus 384 G~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 384 GGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 9999999999999999999999999999999999999976
No 17
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.5e-36 Score=377.04 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=231.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|+|++||++.||++++|+|+++++.| .|
T Consensus 159 ~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~ 230 (533)
T PTZ00212 159 EDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQ 230 (533)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CC
Confidence 567888999999999999999999999999999964 2566 589999999999999999999999999987 58
Q ss_pred CccccCCcEEEEeeecccCcccc-------Cc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSGL-------SS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~el-------~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
+++++||||||++++|||.+.+. .+ +.. .++|++++++++.+|++.++++|+++++|++.|+++|.++|
T Consensus 231 ~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~ 310 (533)
T PTZ00212 231 PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG 310 (533)
T ss_pred CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 99999999999999999998762 44 555 78999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEE
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 436 (1617)
|++|++++..+|+|||++|||+++++++ +++.+||+|+.|+++.++. ++|++|+||..+.+|||+|
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~l 377 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVL 377 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEE
Confidence 9999999999999999999999999999 9989999999999887642 6899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+|..+|+|+||.++||++++++++.+.++|+||||+|..
T Consensus 378 rG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ 418 (533)
T PTZ00212 378 RGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEML 418 (533)
T ss_pred ECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 18
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=6.3e-36 Score=332.76 Aligned_cols=206 Identities=32% Similarity=0.428 Sum_probs=194.2
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCCC
Q 000362 210 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMP 289 (1617)
Q Consensus 210 qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M~ 289 (1617)
.|++.+.+++++|. +.|.+.|++|+++|+..+.++. + ++..+||+|++++||++.||++++|++|.|+++|+.||
T Consensus 3 ~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~ 77 (209)
T cd03333 3 LLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMP 77 (209)
T ss_pred HHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCC
Confidence 46677888999999 9999999999999999998743 2 55557999999999999999999999999999999999
Q ss_pred ccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHH
Q 000362 290 TEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRL 369 (1617)
Q Consensus 290 ~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~L 369 (1617)
++++||||||++++||| |||++++|++.|+++|.++||++++++++.+|
T Consensus 78 ~~~~n~~Ill~~~~le~-------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l 126 (209)
T cd03333 78 KRLENAKILLLDCPLEY-------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDL 126 (209)
T ss_pred eEcCCCcEEEEeCCeeE-------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHH
Q 000362 370 ERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIK 448 (1617)
Q Consensus 370 eRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evK 448 (1617)
+|||++|||+++++++ ++++.||+|+.|+++++++ ++|++|+||..+.+|||+|||++..+|+|+|
T Consensus 127 ~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~k 193 (209)
T cd03333 127 ERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVK 193 (209)
T ss_pred HHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHH
Confidence 9999999999999999 9999999999999999753 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 000362 449 SVVQCAVVMAYHLILE 464 (1617)
Q Consensus 449 rvl~dav~v~~~l~lE 464 (1617)
|+++||++++++++++
T Consensus 194 r~l~dal~~~~~~~~~ 209 (209)
T cd03333 194 RSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999764
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-36 Score=373.40 Aligned_cols=254 Identities=19% Similarity=0.260 Sum_probs=235.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC-
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~- 287 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+.++. .++.+|+ +.|+|.++.||++.||++++|++|+++++|+.
T Consensus 137 ~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~ 214 (515)
T cd03338 137 ESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG 214 (515)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCC
Confidence 35778889999999999999999999999999998642 2247898 58999999999999999999999999999986
Q ss_pred CCccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccc-----cHHHHHH
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 352 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 352 (1617)
||+.++||||++|+|+|||.+.+ +. +++. +++|+++++.++++|++.|++||+|+++| +++|++|
T Consensus 215 ~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~ 294 (515)
T cd03338 215 GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHF 294 (515)
T ss_pred CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 59999999999999999998875 22 4677 89999999999999999999999999987 9999999
Q ss_pred HHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCC-Cc
Q 000362 353 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 430 (1617)
Q Consensus 353 L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~ 430 (1617)
|.++||++++++++.+|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||+. +.
T Consensus 295 l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~ 361 (515)
T cd03338 295 LAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGK 361 (515)
T ss_pred HHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCc
Confidence 999999999999999999999999999999999 9989999999999999742 68999999997 69
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+|||+|||++..+++|+||.++||++++++++.++++|+||||+|..
T Consensus 362 ~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ 408 (515)
T cd03338 362 TVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIE 408 (515)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 20
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-35 Score=369.54 Aligned_cols=248 Identities=18% Similarity=0.212 Sum_probs=231.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++.+.+ .|
T Consensus 147 ~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~ 218 (517)
T cd03336 147 EDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQ 218 (517)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CC
Confidence 567888999999999999999999999999999853 3567 589999999999999999999999999876 58
Q ss_pred CccccCCcEEEEeeecccCcccc----------CcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSGL----------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~el----------~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
+++++||||+|++++|||++++. .+++. .++|++++++++.+|++.|+++|+++++|++.|++||.++|
T Consensus 219 ~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~ 298 (517)
T cd03336 219 PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG 298 (517)
T ss_pred CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 99999999999999999988752 23656 79999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEE
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 436 (1617)
|+++++++..+|+|||++|||+++++++ +++.+||+|+.|++..++ .++|++|+||+.+.+|||+|
T Consensus 299 I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI~l 365 (517)
T cd03336 299 IMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIG-------------EDKLIRFSGVAAGEACTIVL 365 (517)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEEC-------------CeEEEEEEccCCCceEEEEE
Confidence 9999999999999999999999999999 999999999999988764 26899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+|..+|+|+||.++||++++++++.+..+|+||||+|..
T Consensus 366 rG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ 406 (517)
T cd03336 366 RGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEML 406 (517)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-35 Score=370.28 Aligned_cols=254 Identities=20% Similarity=0.261 Sum_probs=234.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCC-CC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH-KH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvah-k~ 287 (1617)
.+|++.+.+++++|....|.+.|+.|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.| ++
T Consensus 138 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~ 215 (517)
T TIGR02342 138 EILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAG 215 (517)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCC
Confidence 45788889999999999999999999999999997632 2336888 699999999999999999999999999999 59
Q ss_pred CCccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccc-----cHHHHHH
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 352 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 352 (1617)
||++++||||++++|+||+.+.+ +. +++. +++|+++++.++++|++.|++||+|+++| +++|++|
T Consensus 216 mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~ 295 (517)
T TIGR02342 216 GPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295 (517)
T ss_pred CCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 99999999999999999998865 23 4677 89999999999999999999999999998 9999999
Q ss_pred HHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCC-c
Q 000362 353 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR-L 430 (1617)
Q Consensus 353 L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~-~ 430 (1617)
|.++||.+++++++.+|+|||++|||+++++++ +++.+||+|+.|++++++ .++|++|++|+.. .
T Consensus 296 l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~-------------~~~~~~i~~~~~~~~ 362 (517)
T TIGR02342 296 LAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTD-------------GGKIIKITGIQNAGK 362 (517)
T ss_pred HhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEEC-------------CeEEEEEEccCCCCc
Confidence 999999999999999999999999999999999 999999999999987753 2589999999884 8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
.|||+|||+|..+++|+||+++||++++++++.++.+|+||||+|..
T Consensus 363 ~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ 409 (517)
T TIGR02342 363 TVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIE 409 (517)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 22
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-35 Score=365.93 Aligned_cols=252 Identities=23% Similarity=0.306 Sum_probs=233.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
..|++.+.+++++|....|.+.|++|+++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|++.+.|+.|
T Consensus 146 ~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~ 221 (531)
T TIGR02347 146 ELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221 (531)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCC
Confidence 4577888999999999999999999999999999863 234787 479999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCC-------Ce---EEEecccccHH
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCH-------PN---VVLVEKTVSRD 348 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~-------pn---VVLveksVs~~ 348 (1617)
++++.||||+|++++||+.+++ +. .+.. +.+|++|++.++++|+.++ |+ ||+++++|++.
T Consensus 222 ~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~ 301 (531)
T TIGR02347 222 PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPP 301 (531)
T ss_pred ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHH
Confidence 9999999999999999999866 22 3666 8999999999999999976 36 99999999999
Q ss_pred HHHHHHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCC
Q 000362 349 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 427 (1617)
Q Consensus 349 Al~~L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~ 427 (1617)
|++||.++||++++++++.+|+|||++|||+++++++ +++..||+|+.|+++.++. ++|++|+||.
T Consensus 302 a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~ 368 (531)
T TIGR02347 302 SLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVK 368 (531)
T ss_pred HHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCC
Confidence 9999999999999999999999999999999999999 9999999999999998743 6899999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 428 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 428 ~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
.+..|||+|||+|..+|+|+||.++||++++++++.++++|+||||+|..
T Consensus 369 ~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ 418 (531)
T TIGR02347 369 NPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418 (531)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999876
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-35 Score=366.25 Aligned_cols=225 Identities=26% Similarity=0.439 Sum_probs=210.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
..|++.+.+++++|..+.|.+.|++|+++|+..+.++.... ..+|+++||+|+|++||++.||++++|+||+|+++|++
T Consensus 145 ~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~ 224 (480)
T cd03337 145 AQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK 224 (480)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence 44778888999999999999999999999999998864322 36899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChH
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 367 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~ 367 (1617)
|+++++||||||++|+||| ||+|+++|++.|++||.++||++++++++.
T Consensus 225 m~~~~~n~kIlll~~~Le~-------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~ 273 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKT 273 (480)
T ss_pred CCcEecCCCEEEEecCcce-------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHH
Confidence 9999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHH
Q 000362 368 RLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELK 445 (1617)
Q Consensus 368 ~LeRIaR~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ 445 (1617)
+|+|||++|||+++++++ +++..||+ |+.|++++++ .++|+||+||..+.+|||+|||++..+|+
T Consensus 274 ~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~TIllrG~t~~~l~ 340 (480)
T cd03337 274 DNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIG-------------DEYFTFITECKDPKACTILLRGASKDVLN 340 (480)
T ss_pred HHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeC-------------CeEEEEEEcCCCCCEEEEEEECCCHHHHH
Confidence 999999999999999999 99999999 6677767653 26899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 446 RIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 446 evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|+||+++||++++++++.++.+|+||||+|..
T Consensus 341 e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ 372 (480)
T cd03337 341 EVERNLQDAMAVARNIILNPKLVPGGGATEMA 372 (480)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999875
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.2e-35 Score=366.24 Aligned_cols=255 Identities=19% Similarity=0.248 Sum_probs=233.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
..|++.+.+++++|....|.+.|++|+++|+..++.+...| ..+|+ ++|+|+|++||++.||++++|++|++...|.+
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~ 220 (536)
T TIGR02340 142 EALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQ 220 (536)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCC
Confidence 34778889999999999999999999999999996321223 25788 59999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc---------CcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~el---------~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
|+++++||||+|++++|++.+.++ ..++. .++|++++++++++|++.+++||+++++|++.|++||.++|
T Consensus 221 m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~ 300 (536)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG 300 (536)
T ss_pred CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999998662 34777 89999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCc
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 430 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~ 430 (1617)
|++++++++.+|+|||++|||+++++++ + ++..||+|+.|++++++. ++|++|+||..+.
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~ 367 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRK 367 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999985 5 345599999999999753 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+|||+|||+|..+++|+||.++||++++++++.++++|+||||++..
T Consensus 368 ~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ 414 (536)
T TIGR02340 368 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 414 (536)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999876
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-35 Score=366.19 Aligned_cols=250 Identities=21% Similarity=0.323 Sum_probs=232.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC--
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 286 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk-- 286 (1617)
+.|++.+.+++++|....+.+.|++|+++|+..+.++ .+|+ ++|+|+|+.||++.||++++|++|++.+++.
T Consensus 149 ~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~ 222 (522)
T TIGR02345 149 EVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGF 222 (522)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCcccc
Confidence 4577889999999999999999999999999999752 4777 5999999999999999999999999998865
Q ss_pred -CCCccccCCcEEEEeeecccCccc------cC---cHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHH
Q 000362 287 -HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 355 (1617)
Q Consensus 287 -~M~~~i~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~ 355 (1617)
.||++++||||+|++++||+.+.+ +. .++. ++.|++++++++++|+++|++||+|+++|++.+++||.+
T Consensus 223 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 223 EQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred ccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 469999999999999999998765 22 3566 799999999999999999999999999999999999999
Q ss_pred cCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEE
Q 000362 356 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 434 (1617)
Q Consensus 356 ~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTI 434 (1617)
+||+++.+|+..+|+|||++|||+|+++++ +++..||+|+.|++++++ .++|++|+||+.+.+|||
T Consensus 303 ~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~-------------~~r~~~~~g~~~~~~~TI 369 (522)
T TIGR02345 303 HNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIG-------------SERYNYFTGCPHAKTCTI 369 (522)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEEC-------------CeEEEEEEcCCCCceEEE
Confidence 999999999999999999999999999999 998999999999988864 378999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 435 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 435 LLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+|||+|..+|+|+||.++||++++++++.++.+|+||||+|..
T Consensus 370 ~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ 412 (522)
T TIGR02345 370 ILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEME 412 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999999875
No 26
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-35 Score=330.73 Aligned_cols=248 Identities=21% Similarity=0.340 Sum_probs=231.0
Q ss_pred HHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC---C
Q 000362 211 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK---H 287 (1617)
Q Consensus 211 LL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk---~ 287 (1617)
|.+.+.++++||.+....++|++++++|+..+.. ..|. +.|.||||+||.+.||.+|+||.|+|.+... .
T Consensus 155 L~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq 227 (543)
T KOG0361|consen 155 LEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ 227 (543)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhh
Confidence 3477889999999999999999999999999863 3455 7999999999999999999999999998876 4
Q ss_pred CCccccCCcEEEEeeecccCccc---------cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e---------l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
.|+++.|||||+|+..||....+ +..++. +..|+..|...+++|+..|.||||..-.|.++|.+||.+++
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd 307 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD 307 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC
Confidence 69999999999999999986443 456888 99999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEE
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 436 (1617)
|.+..+|...+|.|+..++|+.|.++.. +.+..||+|+.|++++++. ..|-+|+||++...||++|
T Consensus 308 iFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 308 IFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred ceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEE
Confidence 9999999999999999999999999999 9999999999999999753 5899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCcccccC
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~~ 478 (1617)
||+-++.++|++|.+|||++++++++++.++++||||++++.
T Consensus 375 RGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 375 RGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred eccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999874
No 27
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-33 Score=349.83 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=229.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|+.|+++|+..+... .|+ +.|+|.|++||++.||++++|+|+.+.+.| .|
T Consensus 148 ~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~------~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~ 219 (519)
T TIGR02341 148 DDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGS------GNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQ 219 (519)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC------CCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CC
Confidence 4578888999999999999999999999999999541 256 469999999999999999999999999887 68
Q ss_pred CccccCCcEEEEeeecccCccc-------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e-------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 357 (1617)
|++++||||+|++++||+.+.+ +.+ +.. .+.|+++++++++.|++.|+++|++++.|++.|++||.++|
T Consensus 220 ~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~ 299 (519)
T TIGR02341 220 PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG 299 (519)
T ss_pred ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC
Confidence 9999999999999999998755 233 556 78999999999999999999999999999999999999999
Q ss_pred CeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEE
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 Itvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 436 (1617)
|+++++++..+|+|||++|||.++++++ +++.+||+|+.|+++.++ .+.|++|+||+.+..|||+|
T Consensus 300 I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TIll 366 (519)
T TIGR02341 300 VMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIG-------------EDKLLKFSGVKLGEACTIVL 366 (519)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEEC-------------CEEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999 998899999999987764 26899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+|..+|+|+||.++||++++++++.+..+|+||||+|..
T Consensus 367 rG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 407 (519)
T TIGR02341 367 RGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEML 407 (519)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999876
No 28
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-32 Score=340.27 Aligned_cols=233 Identities=21% Similarity=0.300 Sum_probs=214.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++++|....|.+.|++|+++|+..+.++ ++.+|+ +.|+|+|++||++.||++++|++|++.+.|+.|
T Consensus 142 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m 217 (484)
T cd03342 142 ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM 217 (484)
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCC
Confidence 4578888999999999999999999999999999863 346888 589999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHH
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 368 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 368 (1617)
+++++||||+|++++||+.+.++... + ..+||+++++|++.|+++|.++||++++++++.+
T Consensus 218 ~~~~~n~~Ill~~~~le~~~~~~~~~--~-----------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~ 278 (484)
T cd03342 218 PKRVENAYILTCNVSLEYEKTEVNSG--F-----------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRN 278 (484)
T ss_pred CccccCceEEEEeCCCCCCccccCcE--E-----------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHH
Confidence 99999999999999999987762210 0 0139999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000362 369 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 447 (1617)
Q Consensus 369 LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 447 (1617)
|+|||++|||+++++++ +++..||+|+.|+++.++. ++|+||+||..+..|||+|||+|..+|+|+
T Consensus 279 l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~ 345 (484)
T cd03342 279 MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQI 345 (484)
T ss_pred HHHHHHHhCCEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHH
Confidence 99999999999999999 9999999999999988743 589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 448 KSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 448 Krvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+++||++++++++.+.++|+||||+|..
T Consensus 346 er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ 375 (484)
T cd03342 346 KDAIRDGLRAVKNAIEDKCVVPGAGAFEVA 375 (484)
T ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHH
Confidence 999999999999999999999999999875
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.6e-32 Score=334.16 Aligned_cols=221 Identities=25% Similarity=0.321 Sum_probs=209.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
++|++.+.+++++|....|.+.|++|+++|+..+.++.. .+|. ++|+|++++||++.||++++|++|+|++.|+.|
T Consensus 137 ~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m 212 (464)
T cd00309 137 EELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212 (464)
T ss_pred HHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCC
Confidence 457888999999999999999999999999999987542 3455 699999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHH
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 368 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 368 (1617)
++.++||||+|++++||| ||+++++|++.|+++|.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~-------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~ 261 (464)
T cd00309 213 PKRLENAKILLLDCKLEY-------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKED 261 (464)
T ss_pred ceeecCceEEEEecCcce-------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHH
Confidence 999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000362 369 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 447 (1617)
Q Consensus 369 LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 447 (1617)
|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||..+.+|||+|||++..+|+|+
T Consensus 262 L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 328 (464)
T cd00309 262 LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEA 328 (464)
T ss_pred HHHHHHHhCCEEecccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHH
Confidence 99999999999999999 9999999999999999753 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 448 KSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 448 Krvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+++||++++++++.++.+++|||++|..
T Consensus 329 ~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 329 ERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999975
No 30
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=1.6e-31 Score=334.67 Aligned_cols=250 Identities=19% Similarity=0.266 Sum_probs=228.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
..|++.+.+++++|..+. .+.|++|+++|+..+.++. ++.+|+ +.|+|+|++||+..||++++|++|++... .|
T Consensus 149 ~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~ 222 (531)
T TIGR02346 149 KELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GS 222 (531)
T ss_pred HHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CC
Confidence 456777888899998887 9999999999999998642 235888 58999999999999999999999999965 58
Q ss_pred CccccCCcEEEEeeecccCccc------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~e------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 358 (1617)
|++++||||+|+++||++.+.+ +.+ +.. ...|.++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 223 ~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I 302 (531)
T TIGR02346 223 VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNI 302 (531)
T ss_pred ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCc
Confidence 9999999999999999998765 444 556 789999999999999999999999999999999999999999
Q ss_pred eEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCC-CCceEEEEE
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP-TRLGCTVLL 436 (1617)
Q Consensus 359 tvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~-~~~gcTILL 436 (1617)
.++++++..+|+|||++|||.++++++ ++...||+|+.|++++++. +.|.+|++|. .+..|||+|
T Consensus 303 ~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~l 369 (531)
T TIGR02346 303 MVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIIL 369 (531)
T ss_pred EEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEE
Confidence 999999999999999999999999999 9888999999999999632 4799999998 478899999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||+|..+++|+||.++||++++++++.+..+|+||||++..
T Consensus 370 rG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ 410 (531)
T TIGR02346 370 RGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIE 410 (531)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999875
No 31
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.98 E-value=2.9e-31 Score=329.62 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=231.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
+.|++.+.+++.+|....|.+.|++|+++|+..+..+ +|+. .++|+++.||+..||++++|++|.+.+++..|
T Consensus 117 ~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------cccc-chhhhhhccccccccccccceeeecccccccc
Confidence 5688889999999999999999999999999555432 6774 69999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcc-c-------cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCe
Q 000362 289 PTEYKNPRLLLIRGVLGLSSS-G-------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 359 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~-e-------l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gIt 359 (1617)
+++++||||++++++|++.+. + ...++. .++|+++++.++++|.+.+++|||++++|++.|+++|.++||.
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~ 269 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL 269 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE
T ss_pred ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh
Confidence 999999999999999999876 1 235777 8999999999999999999999999999999999999999999
Q ss_pred EeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEE--cCCCCceEEEEE
Q 000362 360 LVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE--GCPTRLGCTVLL 436 (1617)
Q Consensus 360 vv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe--Gc~~~~gcTILL 436 (1617)
++.+|+..+|+|||++|||.++++++ +.+..+|+|+.+++..++. ++|++|+ +|.....|||+|
T Consensus 270 ~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till 336 (485)
T PF00118_consen 270 VIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILL 336 (485)
T ss_dssp EESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEE
T ss_pred ccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEe
Confidence 99999999999999999999999999 9888899999998888743 6899999 699999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 437 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
||++..+++++||++++|+++++++..++.+++|||++|..
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhh
Confidence 99999999999999999999999999999999999999875
No 32
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=302.47 Aligned_cols=256 Identities=18% Similarity=0.242 Sum_probs=232.5
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 208 l~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
.++|++.+.++++||..+++...|++++++|+..|... .+....|+ +.|||.|-.||.+.|+++|+|+||++......
T Consensus 154 re~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp-~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDP-ENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCc-ccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 35689999999999999999999999999999988632 23456888 48999999999999999999999999988777
Q ss_pred CCccccCCcEEEEeeecccCccc---------cCcHHH-HHHHHHHHHHHHHhHhcCCCeEEEecccc-----cHHHHHH
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 352 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~e---------l~Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 352 (1617)
-|++++++||.|++|-|...++. +..++. ++.|+.||.+++++|.+.|.||+|+||+| +++|+||
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 89999999999999999999876 234888 99999999999999999999999999985 8999999
Q ss_pred HHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCC-Cc
Q 000362 353 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 430 (1617)
Q Consensus 353 L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~ 430 (1617)
|.+.+|+|+..|.+.++|.||+.+|+.++.++| +++.+||+++.+++..- . +..+++.++|+.+ ..
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~------~------G~gkivk~tg~~n~g~ 379 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDS------S------GEGKIVKITGIQNAGR 379 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhccc------C------CCccEEEEEEeecCCC
Confidence 999999999999999999999999999999999 99999999998766531 1 2348999999987 68
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+||||+||++.-+|+|.+|.+|||+|++++++....+++|||+-+.+
T Consensus 380 tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEie 426 (534)
T KOG0358|consen 380 TVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIE 426 (534)
T ss_pred ceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchH
Confidence 99999999999999999999999999999999999999999998775
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=1.7e-30 Score=321.69 Aligned_cols=222 Identities=18% Similarity=0.259 Sum_probs=204.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
..|...+.+++++|... |.+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|++++. .|
T Consensus 139 ~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~--~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~ 212 (472)
T cd03341 139 EEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN--IGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GS 212 (472)
T ss_pred HHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc--CCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CC
Confidence 45667778888888765 89999999999999998752 246888 58999999999999999999999988765 45
Q ss_pred CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHH
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 368 (1617)
Q Consensus 289 ~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 368 (1617)
+++++||||+|++++||+ |++||+++++|++.|++||.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~ 264 (472)
T cd03341 213 VKRVKKAKVAVFSCPFDI----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFE 264 (472)
T ss_pred ceeccCCcEEEEeccccC----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHH
Confidence 689999999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCC-CceEEEEEeCCCHHHHHH
Q 000362 369 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RLGCTVLLKGSNSDELKR 446 (1617)
Q Consensus 369 LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~gcTILLRG~s~~~L~e 446 (1617)
|+|||++|||+++++++ +++..||+|+.|++++++ .++|++|+||.. +.+|||+|||++..+++|
T Consensus 265 Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 331 (472)
T cd03341 265 LRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIG-------------DTKVVVFRQNKEDSKIATIVLRGATQNILDD 331 (472)
T ss_pred HHHHHHHhCCEEecccccCCHhHCCCceEEEEEEEC-------------CeeEEEEEccCCCCCeEEEEEECCCHHHHHH
Confidence 99999999999999999 999999999999999974 268999999987 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 447 IKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 447 vKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+||.++||++++++++.++++|+|||++|..
T Consensus 332 ~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 332 VERAIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 9999999999999999999999999999875
No 34
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=285.22 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCC
Q 000362 190 EEKQRAMEKVVSGK---FKAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAG 266 (1617)
Q Consensus 190 ~~~~~~L~~~~~~h---~~~ll~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG 266 (1617)
...+++|...+..+ -.++.+.||+.+.++++||......+.|+.|+++|+..++.. -|+ +.|.|.|+.||
T Consensus 130 ~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs------~nL-~~IqIIK~~Gg 202 (527)
T KOG0363|consen 130 AAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS------TNL-EAIQIIKKLGG 202 (527)
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC------CCc-cceeeehhcCC
Confidence 34455566555553 255677899999999999999999999999999999998752 245 47999999999
Q ss_pred CCCCceeEEeEEEeeccCCCCCCccccCCcEEEEeeecccCccc-------cCc---HHH-HHHHHHHHHHHHHhHhcCC
Q 000362 267 SRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCH 335 (1617)
Q Consensus 267 ~~~dS~vI~GvV~~Knvahk~M~~~i~nPrIlLL~~~LEy~r~e-------l~S---le~-i~qE~eyL~~~V~rI~~~~ 335 (1617)
++.||++=.|.+++|.+.- ..|++++||||||-+.+++-.+++ +.| +.. -..|++-++..|+||...|
T Consensus 203 ~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hg 281 (527)
T KOG0363|consen 203 KLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHG 281 (527)
T ss_pred ccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998864 679999999999999999999887 334 455 6889999999999999999
Q ss_pred CeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCC
Q 000362 336 PNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGK 414 (1617)
Q Consensus 336 pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~ 414 (1617)
.|+.+...=|.++-.++|..+||+.+.+..-.-+||++-+||+.|++++| ....+||+|+.++...+++
T Consensus 282 iN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe---------- 351 (527)
T KOG0363|consen 282 INVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE---------- 351 (527)
T ss_pred CcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc----------
Confidence 99999999999999999999999999999999999999999999999999 9999999999999888765
Q ss_pred CCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 415 RPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 415 ~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
.+++.|.||.-...|||+|||++.++|+|.+|.+|||+||+-....|++.+.|||+.++-
T Consensus 352 ---d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 352 ---DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEML 411 (527)
T ss_pred ---cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHH
Confidence 489999999988899999999999999999999999999999999999999999998864
No 35
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-30 Score=292.01 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=235.9
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 208 l~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~ 287 (1617)
...|+..+.+++.+|...+-.+.+++++++|+..+.. ..+.+|+ ++|+|.+...++..|+.+|+|+|++.+..|..
T Consensus 142 ~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpd 217 (520)
T KOG0359|consen 142 RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD 217 (520)
T ss_pred HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcc
Confidence 4457788899999999999999999999999999983 3567899 69999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc------Cc---HHH-HHHHHHHHHHHHHhHhcCCC----eEEEecccccHHHHHHH
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSGL------SS---FKA-MEQEKDQLKSVMDMIDMCHP----NVVLVEKTVSRDIQESI 353 (1617)
Q Consensus 288 M~~~i~nPrIlLL~~~LEy~r~el------~S---le~-i~qE~eyL~~~V~rI~~~~p----nVVLveksVs~~Al~~L 353 (1617)
||++++|+-||+++.+|||.|+++ ++ -+. +..|++|+.+.|.+|+.++- -||+.||+|++..++.|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 999999999999999999999982 22 344 79999999999999998864 56888999999999999
Q ss_pred HHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCceE
Q 000362 354 LEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGC 432 (1617)
Q Consensus 354 ~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gc 432 (1617)
.+.||.++++.|+..|||+..+||+..+.|+| |++..||+|+.+++.++++ .+|+|+|+|+.+..|
T Consensus 298 a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~ 364 (520)
T KOG0359|consen 298 AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSV 364 (520)
T ss_pred hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcce
Confidence 99999999999999999999999999999999 9999999999999999987 489999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 433 TVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 433 TILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
|||+||+|.+.+..+|.+++|++.+++|.+.+..+++|+|+++-.
T Consensus 365 TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 365 TILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred EEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 999999999999999999999999999999999999999999864
No 36
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=291.93 Aligned_cols=260 Identities=19% Similarity=0.233 Sum_probs=235.5
Q ss_pred HHHHHHH-HHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeec
Q 000362 204 FKAIVSQ-LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKH 282 (1617)
Q Consensus 204 ~~~ll~q-LL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Kn 282 (1617)
++.+=.| |++.+++++++|.+..-.++++.++++|+..++--..+|..+-+-+-|.|-|-+|++..||.++.|..++..
T Consensus 143 vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~ 222 (545)
T KOG0360|consen 143 VDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCS 222 (545)
T ss_pred hhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeecc
Confidence 4455444 678999999999999999999999999999998765567777776899999999999999999999999999
Q ss_pred cCCCCCCccccCCcEEEEeeecccCccc------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHH
Q 000362 283 AAHKHMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQES 352 (1617)
Q Consensus 283 vahk~M~~~i~nPrIlLL~~~LEy~r~e------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~ 352 (1617)
++...||.+|+|+||++|+|.|.-.+.. +.+ ++. .+.|.+..+..+++|++.|+||||++|+|++++++|
T Consensus 223 ~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~ 302 (545)
T KOG0360|consen 223 VASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKY 302 (545)
T ss_pred HhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHH
Confidence 9999999999999999999999877665 334 555 566777779999999999999999999999999999
Q ss_pred HHHcCCeEeecCChHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeeccccccccCCCCCCceEEEEEc
Q 000362 353 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 425 (1617)
Q Consensus 353 L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeG 425 (1617)
|.++|+++|+|+++.+|+|||++|||++++|+. | .+..+|.|+.|.+.+|++ +.++.+.|
T Consensus 303 ~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg 369 (545)
T KOG0360|consen 303 FVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKG 369 (545)
T ss_pred HHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEecc
Confidence 999999999999999999999999999999996 5 466799999999999865 58999999
Q ss_pred CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 426 CPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 426 c~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
.+.. .|+|+|||+|...++|++|.+|+++++++..+.++++++||||++.-
T Consensus 370 ~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 370 TKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred Cccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 8877 99999999999999999999999999999999999999999999864
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-27 Score=296.15 Aligned_cols=243 Identities=20% Similarity=0.206 Sum_probs=224.8
Q ss_pred hcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEee-ccCCCCCC-ccc
Q 000362 215 VGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK-HAAHKHMP-TEY 292 (1617)
Q Consensus 215 ~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~K-nvahk~M~-~~i 292 (1617)
+.+++.+|....+ +.|+.|+++|+..|..... |+ +.|++.|..||...|+.+++|++|+| .+.|..|| +.+
T Consensus 144 ~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~ 216 (524)
T COG0459 144 AITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRL 216 (524)
T ss_pred hhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCcccc
Confidence 5667888888888 9999999999999987432 66 58999999999999999999999999 99999999 899
Q ss_pred cCCcEEEEeeecccCccc------cC---cHHH-HHHHH-HHHHHHHHhHhcCCCe-EEEecccccHHHHHHHHHcCCeE
Q 000362 293 KNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEK-DQLKSVMDMIDMCHPN-VVLVEKTVSRDIQESILEKGMTL 360 (1617)
Q Consensus 293 ~nPrIlLL~~~LEy~r~e------l~---Sle~-i~qE~-eyL~~~V~rI~~~~pn-VVLveksVs~~Al~~L~~~gItv 360 (1617)
+||+|||++++|++.+.+ +. .|.. .++|+ ++|..+|.+|.+.+.| ||+++++|+++|++||.+.+|.+
T Consensus 217 e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt 296 (524)
T COG0459 217 ENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILT 296 (524)
T ss_pred ccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhccee
Confidence 999999999999999876 22 3666 78888 9999999999999999 99999999999999999999999
Q ss_pred eecCChHHH-HHHHHHhCCceecccc-CCCCCccc--cceEEEEEeeccccccccCCCCCCceEEEEEcCCC--CceEEE
Q 000362 361 VFDMKLHRL-ERVARCTGSPILSSGS-LTSQKLKH--CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT--RLGCTV 434 (1617)
Q Consensus 361 v~nVK~~~L-eRIaR~TGA~IisSid-L~~~~LG~--C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~--~~gcTI 434 (1617)
+++|+.++| +||+++|||.+++.++ ++...+|. |+.++..++++ ..+.+|++|.. +..|||
T Consensus 297 ~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~tI 363 (524)
T COG0459 297 GRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVATI 363 (524)
T ss_pred cceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEEE
Confidence 999999999 8999999999999999 99999999 99999998754 47899999985 778999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 435 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 435 LLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+|||+++.+++|.||.++||++++++++.|..+++|||+.+..
T Consensus 364 ~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~ 406 (524)
T COG0459 364 LVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIE 406 (524)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHH
Confidence 9999999999999999999999999999999999999999976
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-24 Score=254.52 Aligned_cols=232 Identities=19% Similarity=0.199 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCCCccccCCcEEEEeeeccc
Q 000362 227 WVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGL 306 (1617)
Q Consensus 227 w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M~~~i~nPrIlLL~~~LEy 306 (1617)
-.+++++|+.+|+..+.|. + .|++ +.|+|.||.||.+.+|+++.|+||++.+. +-+++-+..||++.+||++.
T Consensus 171 ~ed~l~~lVa~ac~si~p~---~-~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 171 NEDFLTKLVAKACVSILPL---M-SFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDI 243 (537)
T ss_pred hHHHHHHHHHHHHHhhccc---c-cccc-cceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCc
Confidence 4799999999999999995 2 3888 59999999999999999999999998876 44588889999999999999
Q ss_pred Cccc------cCc---HHH-HHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHHh
Q 000362 307 SSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCT 376 (1617)
Q Consensus 307 ~r~e------l~S---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~T 376 (1617)
.+++ +.+ +.. -+.|+.-++.+|+.|...|++||++.+.|.+++++||.+.+|+|++--++.+|.|+||..
T Consensus 244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv 323 (537)
T KOG0362|consen 244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTV 323 (537)
T ss_pred ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence 8887 344 334 578888899999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEE-EcCCCCceEEEEEeCCCHHHHHHHHHHHHHH
Q 000362 377 GSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI-EGCPTRLGCTVLLKGSNSDELKRIKSVVQCA 454 (1617)
Q Consensus 377 GA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff-eGc~~~~gcTILLRG~s~~~L~evKrvl~da 454 (1617)
||.+++.+- +..+.||+|++++.++++. .+++.| .+|......||+|||++...|+.+||+++++
T Consensus 324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddg 390 (537)
T KOG0362|consen 324 GATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDG 390 (537)
T ss_pred CCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHh
Confidence 999999999 8999999999999999764 356555 4566778899999999999999999999999
Q ss_pred HHHHHHHhhcCeeeecCCcccccC
Q 000362 455 VVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 455 v~v~~~l~lE~s~l~g~Ga~~~~~ 478 (1617)
+++++.+....++++|.||++...
T Consensus 391 V~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 391 VNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred HHHhhhhccCCccccCCchhHHHH
Confidence 999999999999999999999863
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=3.1e-23 Score=259.98 Aligned_cols=219 Identities=15% Similarity=0.201 Sum_probs=187.0
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCC-ceeEEeEEEeeccCCCC-
Q 000362 210 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHKH- 287 (1617)
Q Consensus 210 qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~d-S~vI~GvV~~Knvahk~- 287 (1617)
.|++.+.+++ .+.+.|++|+++|+..+.++ + ++.|+ .||...| +++++|++|++.+.|..
T Consensus 142 ~l~~va~ts~------~~~~~l~~lv~~Av~~v~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~ 203 (542)
T PRK12849 142 EIAQVATISA------NGDEEIGELIAEAMEKVGKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPYF 203 (542)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHHhccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCcc
Confidence 3566666643 37799999999999998652 2 23343 6999887 79999999999998874
Q ss_pred ------CCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHc-----
Q 000362 288 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK----- 356 (1617)
Q Consensus 288 ------M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~----- 356 (1617)
|++.++||+||++++.|.- . +.+..++++|.+.+++||+++++|++.|+++|.++
T Consensus 204 ~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~ 269 (542)
T PRK12849 204 VTDPERMEAVLEDPLILLTDKKISS-------L-------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGG 269 (542)
T ss_pred cccccCceEEeeCcEEEeecCCcCC-------H-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcc
Confidence 6899999999999996532 2 22445789999999999999999999999999999
Q ss_pred -CCeEeecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEE
Q 000362 357 -GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 424 (1617)
Q Consensus 357 -gItvv~nVK-----~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 424 (1617)
||++|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 333 (542)
T PRK12849 270 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVD 333 (542)
T ss_pred ccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEe
Confidence 999999888 55599999999999999 577 8888899999999765 4788999
Q ss_pred cCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeee
Q 000362 425 GCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 469 (1617)
Q Consensus 425 Gc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ 469 (1617)
||..+ ..|||+|||+|..+|+|+||.++||++++++++.+. ||+
T Consensus 334 g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~Vp 412 (542)
T PRK12849 334 GAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVP 412 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eec
Confidence 99875 389999999999999999999999999999999985 999
Q ss_pred cCCccccc
Q 000362 470 DQRAMFST 477 (1617)
Q Consensus 470 g~Ga~~~~ 477 (1617)
||||++..
T Consensus 413 GGGa~e~~ 420 (542)
T PRK12849 413 GGGVALLR 420 (542)
T ss_pred CCCHHHHH
Confidence 99999875
No 40
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=1.3e-23 Score=263.26 Aligned_cols=220 Identities=15% Similarity=0.204 Sum_probs=191.8
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC--
Q 000362 210 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH-- 287 (1617)
Q Consensus 210 qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~-- 287 (1617)
.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|++..| ...+|++++|++|++.+.|..
T Consensus 142 ~l~~va~ts~------~~~~~ls~lv~~Av~~v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~ 204 (542)
T PRK00013 142 EIAQVATISA------NGDEEIGKLIAEAMEKVGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFV 204 (542)
T ss_pred HHHHHHHhcc------cchHHHHHHHHHHHHHhCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCccccccc
Confidence 3566666643 37899999999999998652 1 388988887 888999999999999998884
Q ss_pred -----CCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC-----
Q 000362 288 -----MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG----- 357 (1617)
Q Consensus 288 -----M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g----- 357 (1617)
|++.++||+||++++.|.- . +.+..++++|.+.|++|||++++|++.|+++|..++
T Consensus 205 ~~~~~~~~~~~n~~Ilv~d~~i~~-------~-------~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~ 270 (542)
T PRK00013 205 TDPEKMEAELENPYILITDKKISN-------I-------QDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 270 (542)
T ss_pred ccccCCeEEEecCEEEEEcCccCC-------H-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccc
Confidence 4899999999999996532 2 224577899999999999999999999999999997
Q ss_pred -CeEeecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEc
Q 000362 358 -MTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 425 (1617)
Q Consensus 358 -Itvv~nVK-----~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeG 425 (1617)
|.+|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.. ++++||+|
T Consensus 271 ~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~ 334 (542)
T PRK00013 271 KVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDG 334 (542)
T ss_pred eEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeC
Confidence 99999887 88999999999999999 788 8888999999999864 47899999
Q ss_pred CCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeec
Q 000362 426 CPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 470 (1617)
Q Consensus 426 c~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g 470 (1617)
|..+. .|||+|||+|+.+++|+||.++||++++++++.+. ||+|
T Consensus 335 ~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpG 413 (542)
T PRK00013 335 AGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPG 413 (542)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 98765 78999999999999999999999999999999985 9999
Q ss_pred CCccccc
Q 000362 471 QRAMFST 477 (1617)
Q Consensus 471 ~Ga~~~~ 477 (1617)
|||++..
T Consensus 414 GGa~e~~ 420 (542)
T PRK00013 414 GGVALLR 420 (542)
T ss_pred cHHHHHH
Confidence 9999875
No 41
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.91 E-value=2e-23 Score=260.95 Aligned_cols=221 Identities=16% Similarity=0.234 Sum_probs=189.9
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCC-ceeEEeEEEeeccCCC
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHK 286 (1617)
Q Consensus 208 l~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~d-S~vI~GvV~~Knvahk 286 (1617)
.++|++.+.+++++ .+.|++++++|+..+.++ + .|.| .+||+..| +++++|++|.+.+.|.
T Consensus 138 ~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~ 199 (520)
T cd03344 138 KEEIAQVATISANG------DEEIGELIAEAMEKVGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSP 199 (520)
T ss_pred HHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCC
Confidence 34567777776543 688999999999988642 1 2434 58999999 7999999999998877
Q ss_pred CC-------CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC-
Q 000362 287 HM-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM- 358 (1617)
Q Consensus 287 ~M-------~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI- 358 (1617)
.| +++++||+|++++++|... +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 200 ~~~~~~~~~~~~~~n~~Ili~d~~l~~~--------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 200 YFVTDPEKMEVELENPYILLTDKKISSI--------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred ccccCcccCeEEeeCCEEEEECCCCCCH--------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 64 4689999999999996432 1245578999999999999999999999999999999
Q ss_pred -----eEeecC-----ChHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEE
Q 000362 359 -----TLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 422 (1617)
Q Consensus 359 -----tvv~nV-----K~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~f 422 (1617)
.+|+.+ ++++|+|||++|||.+++ +++ +....||+|+.|++.+ ++++|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~ 329 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTI 329 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEE
Confidence 887765 999999999999999999 777 8878899999999876 37899
Q ss_pred EEcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCee
Q 000362 423 IEGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 467 (1617)
Q Consensus 423 feGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~ 467 (1617)
|+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 330 i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~ 408 (520)
T cd03344 330 IGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-I 408 (520)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9999765 589999999999999999999999999999999995 9
Q ss_pred eecCCccccc
Q 000362 468 LVDQRAMFST 477 (1617)
Q Consensus 468 l~g~Ga~~~~ 477 (1617)
|+||||++..
T Consensus 409 VpGGGa~e~~ 418 (520)
T cd03344 409 VPGGGVALLR 418 (520)
T ss_pred CcCCcHHHHH
Confidence 9999999875
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.91 E-value=6.1e-23 Score=258.42 Aligned_cols=220 Identities=12% Similarity=0.175 Sum_probs=189.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCc-eeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS-~vI~GvV~~Knvahk~ 287 (1617)
++|++.+.+++. +.+.|++|+++|+..+.++ | .|.++.||+..|| ++++|++|.+...|..
T Consensus 153 ~~l~~va~ts~~------~~~~l~~li~eAv~~vg~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~ 214 (555)
T PTZ00114 153 EDILNVATISAN------GDVEIGSLIADAMDKVGKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPY 214 (555)
T ss_pred HHHHHHHHHHcC------ChHHHHHHHHHHHHHhCcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccc
Confidence 346677777543 3578999999999998652 2 2888999999999 7999999999998875
Q ss_pred -------CCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC---
Q 000362 288 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG--- 357 (1617)
Q Consensus 288 -------M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g--- 357 (1617)
|+..++||+||+++++|+.. + .+..++++|.+.+.+||+++++|++.|+++|..++
T Consensus 215 ~~~~~~~~~~~l~~~~Ili~d~~L~~~----------~----~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g 280 (555)
T PTZ00114 215 FVTNEKTQKVELENPLILVTDKKISSI----------Q----SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRG 280 (555)
T ss_pred cccccccCeEEecCCEEEEEcCCCCCH----------H----HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCC
Confidence 58899999999999999831 1 26677889999999999999999999999999986
Q ss_pred ---CeEeec-----CChHHHHHHHHHhCCceeccc------c-CCCCCccccceEEEEEeeccccccccCCCCCCceEEE
Q 000362 358 ---MTLVFD-----MKLHRLERVARCTGSPILSSG------S-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 422 (1617)
Q Consensus 358 ---Itvv~n-----VK~~~LeRIaR~TGA~IisSi------d-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~f 422 (1617)
|.+|++ +++.+|+|||++|||.++++. + +++..||+|+.|++.+. .+++
T Consensus 281 ~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~----------------~~~~ 344 (555)
T PTZ00114 281 GLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKD----------------ETVI 344 (555)
T ss_pred ceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEec----------------eEEE
Confidence 999976 788999999999999999998 5 67778999999999881 4556
Q ss_pred EEcCC-----------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCee
Q 000362 423 IEGCP-----------------------------------TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 467 (1617)
Q Consensus 423 feGc~-----------------------------------~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~ 467 (1617)
|+||. .+..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 345 ~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-v 423 (555)
T PTZ00114 345 LTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-I 423 (555)
T ss_pred EeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 66765 56789999999999999999999999999999998865 9
Q ss_pred eecCCccccc
Q 000362 468 LVDQRAMFST 477 (1617)
Q Consensus 468 l~g~Ga~~~~ 477 (1617)
|+||||++..
T Consensus 424 VpGGGa~e~~ 433 (555)
T PTZ00114 424 VPGGGVALLR 433 (555)
T ss_pred ccCCcHHHHH
Confidence 9999999875
No 43
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.90 E-value=6.5e-23 Score=257.31 Aligned_cols=210 Identities=16% Similarity=0.221 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC-------CCccccCCcEE
Q 000362 226 SWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH-------MPTEYKNPRLL 298 (1617)
Q Consensus 226 ~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~-------M~~~i~nPrIl 298 (1617)
.+.+.|++|+++|+..+.++ + .|.|++.. |...++++++|++|.+...|.. |+++++||+||
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Il 221 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYIL 221 (541)
T ss_pred cChHHHHHHHHHHHHHhccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEE
Confidence 47899999999999998652 2 35676766 6778999999999999999884 99999999999
Q ss_pred EEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC------eEeec-----CChH
Q 000362 299 LIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM------TLVFD-----MKLH 367 (1617)
Q Consensus 299 LL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI------tvv~n-----VK~~ 367 (1617)
+++++|+. + +.+..++++|.+.+++||+++++|++.|+++|.++|| .+|++ +++.
T Consensus 222 v~d~~i~~-------~-------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~ 287 (541)
T PRK12851 222 IHEKKISN-------L-------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKA 287 (541)
T ss_pred EEcCCcCc-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHh
Confidence 99998642 1 1266789999999999999999999999999999997 78885 9999
Q ss_pred HHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEcCCCCc-----------
Q 000362 368 RLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL----------- 430 (1617)
Q Consensus 368 ~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~----------- 430 (1617)
+|+|||++|||.+++ +++ ++...||+|+.|++++ ++++||+||..+.
T Consensus 288 ~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~ 351 (541)
T PRK12851 288 MLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDGAGSKTEIEGRVAQIRA 351 (541)
T ss_pred HHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 677 7888899999998876 3789999997653
Q ss_pred ------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 431 ------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 431 ------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
.|||+|||+|..+++|+||.++||++++++++.+. ||+||||++..
T Consensus 352 ~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~ 421 (541)
T PRK12851 352 QIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLR 421 (541)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHH
Confidence 78999999999999999999999999999999995 99999999875
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.90 E-value=1.3e-22 Score=254.12 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=187.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~-~dS~vI~GvV~~Knvahk~ 287 (1617)
++|++.+.++. .+.+.|++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..
T Consensus 140 ~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~ 201 (524)
T TIGR02348 140 KEIAQVATISA------NNDEEIGSLIAEAMEKVGKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPY 201 (524)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhCcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcc
Confidence 34666666643 36789999999999998653 2 233443 6666 6699999999999999886
Q ss_pred C-------CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHc----
Q 000362 288 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 356 (1617)
Q Consensus 288 M-------~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~---- 356 (1617)
| ++.++||+||++++.|+- . +.+..++++|.+.|++||+++++|++.|+++|..+
T Consensus 202 ~~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~ 267 (524)
T TIGR02348 202 FVTDAEKMEVELENPYILITDKKISN-------I-------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267 (524)
T ss_pred cccCccCCeEEeeCceeeeccCCcCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhccc
Confidence 5 889999999999997542 1 12577889999999999999999999999999986
Q ss_pred --CCeEeecCCh-----HHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEE
Q 000362 357 --GMTLVFDMKL-----HRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 423 (1617)
Q Consensus 357 --gItvv~nVK~-----~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 423 (1617)
||++|++++. .+|+|||++|||.+++ +++ +++..||+|+.|++.+ +++++|
T Consensus 268 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 331 (524)
T TIGR02348 268 TLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIV 331 (524)
T ss_pred ccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEE
Confidence 8999988754 8999999999999999 888 8888999999999865 378999
Q ss_pred EcCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000362 424 EGCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 468 (1617)
Q Consensus 424 eGc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 468 (1617)
+||..+. .+||+|||+|..+++|+||.++||++++++++.+. ||
T Consensus 332 ~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~V 410 (524)
T TIGR02348 332 EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IV 410 (524)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 9987654 68999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000362 469 VDQRAMFST 477 (1617)
Q Consensus 469 ~g~Ga~~~~ 477 (1617)
+||||++..
T Consensus 411 pGGGa~e~~ 419 (524)
T TIGR02348 411 PGGGVALLR 419 (524)
T ss_pred cCCcHHHHH
Confidence 999999875
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.90 E-value=1.3e-22 Score=254.73 Aligned_cols=221 Identities=14% Similarity=0.233 Sum_probs=187.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M 288 (1617)
++|++.+.+++.+ .+.|++|+++|+..+.++ + .+|++ . .+..| .++++++|++|++.+.|..|
T Consensus 142 ~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~---g-~i~v~-~---~~~~g---~~~~~v~G~~~~~g~~~p~~ 204 (544)
T PRK12850 142 KEIAQVATISANG------DESIGEMIAEAMDKVGKE---G-VITVE-E---AKTLG---TELDVVEGMQFDRGYLSPYF 204 (544)
T ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc---C-ceeeE-E---ccccC---cceEEEEeEEecCccCcCcc
Confidence 4466666665433 588999999999999652 2 34442 2 23444 68999999999999998764
Q ss_pred -------CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCC---
Q 000362 289 -------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM--- 358 (1617)
Q Consensus 289 -------~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI--- 358 (1617)
++.++||+|||+++.|. ++ +.+..++++|.+.|++||+++++|++.|+++|.++||
T Consensus 205 ~~~~~~~~~~~~n~~Ill~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 205 VTNPEKMRAELEDPYILLHEKKIS-------NL-------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred ccccccCeEEEeCCEEEEEecccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 88999999999999643 21 2277889999999999999999999999999999999
Q ss_pred ---eEeec-----CChHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEE
Q 000362 359 ---TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 424 (1617)
Q Consensus 359 ---tvv~n-----VK~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 424 (1617)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|+
T Consensus 271 ~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 334 (544)
T PRK12850 271 LKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIID 334 (544)
T ss_pred ceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEe
Confidence 99887 9999999999999999999 677 8888899999998776 3789999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeee
Q 000362 425 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 469 (1617)
Q Consensus 425 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ 469 (1617)
||..+. .|||+|||+|..+++|+||.++||++++++++.+ .||+
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~Vp 413 (544)
T PRK12850 335 GAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVP 413 (544)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 998753 7999999999999999999999999999999999 5999
Q ss_pred cCCccccc
Q 000362 470 DQRAMFST 477 (1617)
Q Consensus 470 g~Ga~~~~ 477 (1617)
||||++..
T Consensus 414 GGGa~e~~ 421 (544)
T PRK12850 414 GGGVALLR 421 (544)
T ss_pred CCcHHHHH
Confidence 99999875
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=1.7e-21 Score=245.10 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=187.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~-~dS~vI~GvV~~Knvahk~ 287 (1617)
++|++.+.++..+ .+.|++|+++|+..|.++ + .|.|.. ||.. .++++++|++|++...+..
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g-------~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~ 203 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---G-------VITVEE--NKSLETEVDIVEGMKFDRGYLSPY 203 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---C-------ceeeec--CCCcceEEEEEEeEEecCCccCCc
Confidence 4466666665432 488999999999999753 2 233432 7776 7999999999999988874
Q ss_pred -------CCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHc----
Q 000362 288 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 356 (1617)
Q Consensus 288 -------M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~---- 356 (1617)
|+..++||+|||+++.|.- . +++..+++.|.+.+++||+++++|++.|+++|..+
T Consensus 204 ~v~~~~~~~~~l~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~ 269 (545)
T PRK12852 204 FVTNAEKMTVELDDAYILLHEKKLSG-------L-------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRG 269 (545)
T ss_pred cccccccceEEecCceEEEecCccCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccc
Confidence 9999999999999875432 1 36777899999999999999999999999999876
Q ss_pred --CCeEeecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEE
Q 000362 357 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 423 (1617)
Q Consensus 357 --gItvv~nVK-----~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 423 (1617)
+|++|++.+ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +.+++|
T Consensus 270 ~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i 333 (545)
T PRK12852 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIV 333 (545)
T ss_pred cceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEE
Confidence 899999665 99999999999999999 677 8888899999998877 367889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000362 424 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 468 (1617)
Q Consensus 424 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 468 (1617)
+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. ||
T Consensus 334 ~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~V 412 (545)
T PRK12852 334 NGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IV 412 (545)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 998763 679999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000362 469 VDQRAMFST 477 (1617)
Q Consensus 469 ~g~Ga~~~~ 477 (1617)
+||||++..
T Consensus 413 pGGGa~e~~ 421 (545)
T PRK12852 413 PGGGVALLR 421 (545)
T ss_pred cCchHHHHH
Confidence 999999875
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.87 E-value=2.2e-21 Score=243.28 Aligned_cols=221 Identities=15% Similarity=0.209 Sum_probs=180.9
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC-
Q 000362 210 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM- 288 (1617)
Q Consensus 210 qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS~vI~GvV~~Knvahk~M- 288 (1617)
.|++.+.+++ .+.+.|++|+++|+..|.++ | .+|+ + -.+|...++++++|++|++...|..|
T Consensus 142 ~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~fv 204 (529)
T CHL00093 142 AITQVASISA------GNDEEVGSMIADAIEKVGRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYFV 204 (529)
T ss_pred HHHHHHHHhc------cChHHHHHHHHHHHHHhccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCccc
Confidence 4566666643 37899999999999999752 2 2333 1 12345677899999999999887754
Q ss_pred --Cc----cccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHH--HH----c
Q 000362 289 --PT----EYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESI--LE----K 356 (1617)
Q Consensus 289 --~~----~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L--~~----~ 356 (1617)
++ .++||+||+++++||+. +..+..++++|...+.++|+++++|++.|+.+| .+ +
T Consensus 205 ~~~k~~~~~l~n~~Ili~d~~le~~-------------~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~ 271 (529)
T CHL00093 205 TDTERMEVVQENPYILLTDKKITLV-------------QQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIV 271 (529)
T ss_pred cCCccceEEecCceehhhcCCCCch-------------HHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccc
Confidence 43 59999999999999985 234788889999999999999999999665554 77 5
Q ss_pred CCeEeecC-----ChHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEEEc
Q 000362 357 GMTLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 425 (1617)
Q Consensus 357 gItvv~nV-----K~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeG 425 (1617)
||++|+++ ++.+|+|||++|||.+++ +++ +++.+||+|+.+++.+ +++++|++
T Consensus 272 ~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~ 335 (529)
T CHL00093 272 NVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIAD 335 (529)
T ss_pred eEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEec
Confidence 99999998 458899999999999999 688 8888899999999875 36788875
Q ss_pred ---------CCCC-------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecC
Q 000362 426 ---------CPTR-------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQ 471 (1617)
Q Consensus 426 ---------c~~~-------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~ 471 (1617)
|... ..|||+|||+|+.+++|.||.++||++++++++.+. +|+||
T Consensus 336 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGG 414 (529)
T CHL00093 336 GNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGG 414 (529)
T ss_pred CcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCC
Confidence 3321 367899999999999999999999999999999995 99999
Q ss_pred Cccccc
Q 000362 472 RAMFST 477 (1617)
Q Consensus 472 Ga~~~~ 477 (1617)
|+++..
T Consensus 415 Ga~e~~ 420 (529)
T CHL00093 415 GATLVH 420 (529)
T ss_pred cHHHHH
Confidence 999875
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.85 E-value=1.3e-20 Score=236.60 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=183.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~-~dS~vI~GvV~~Knvahk~ 287 (1617)
++|++.+.++..++ +.|++|+++|+..|.++ | .|.|..+ +.. .++++++|++|++...|..
T Consensus 142 ~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~ 203 (546)
T PRK14104 142 DEIAQVGTISANGD------AEIGKFLADAMKKVGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPY 203 (546)
T ss_pred HHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcc
Confidence 34666666654432 66999999999998652 2 3445543 445 5899999999999999885
Q ss_pred C-------CccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHH-----
Q 000362 288 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE----- 355 (1617)
Q Consensus 288 M-------~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~----- 355 (1617)
| +..++||+|++.+.. +.++ +.+..++++|...+++||+++++|++.|+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~Ilv~d~~-------i~~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~ 269 (546)
T PRK14104 204 FVTNADKMRVEMDDAYILINEKK-------LSSL-------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269 (546)
T ss_pred hhcCcccCceeeeCcEEEEehhh-------hcCH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccc
Confidence 5 778999999999833 2333 2266889999999999999999999999999984
Q ss_pred -cCCeEeecCC-----hHHHHHHHHHhCCceecc-----cc-CCCCCccccceEEEEEeeccccccccCCCCCCceEEEE
Q 000362 356 -KGMTLVFDMK-----LHRLERVARCTGSPILSS-----GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 423 (1617)
Q Consensus 356 -~gItvv~nVK-----~~~LeRIaR~TGA~IisS-----id-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 423 (1617)
.||.+|++++ +.+|+|||++|||.++++ ++ ++...||+|+.+++.. +.+++|
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i 333 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIV 333 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEE
Confidence 6899998777 899999999999999999 77 8888899999988521 478889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000362 424 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 468 (1617)
Q Consensus 424 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 468 (1617)
+||..+ ..+||+|||+|+.+++++||.++||++++++++.+. |+
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~V 412 (546)
T PRK14104 334 NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IV 412 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cC
Confidence 999875 789999999999999999999999999999999996 99
Q ss_pred ecCCccccc
Q 000362 469 VDQRAMFST 477 (1617)
Q Consensus 469 ~g~Ga~~~~ 477 (1617)
+|||+++..
T Consensus 413 pGGGa~e~~ 421 (546)
T PRK14104 413 PGGGVALLR 421 (546)
T ss_pred cCchHHHHH
Confidence 999999875
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.85 E-value=5.9e-21 Score=241.18 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=186.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCCc-eeEEeEEEeeccCCC-
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK- 286 (1617)
Q Consensus 209 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~dS-~vI~GvV~~Knvahk- 286 (1617)
.+|++.+.++++ +.+.|++|+++|+..|.++ | .++ ...||+..|+ ++++|++|++...|.
T Consensus 196 ~~L~~vA~tS~~------~~~~i~~liaeAv~~Vg~~---g-~i~--------v~~g~s~~dsl~~v~G~~~d~g~~spy 257 (600)
T PLN03167 196 SELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---G-VVT--------LEEGKSAENNLYVVEGMQFDRGYISPY 257 (600)
T ss_pred HHHHHHHHHhcc------CcHHHHHHHHHHHHHhccC---C-cEE--------eccCCCccceeEEEEEEEecCCccCcc
Confidence 356677777543 4568999999999999652 2 222 2269999998 899999999999988
Q ss_pred ------CCCccccCCcEEEEeeecccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHH------
Q 000362 287 ------HMPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL------ 354 (1617)
Q Consensus 287 ------~M~~~i~nPrIlLL~~~LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~------ 354 (1617)
+|+++++||+|||+++.|+. .+ .+..++++|...++++|++.++|++.|+++|.
T Consensus 258 fvt~~~~m~~~l~np~Ill~d~~i~~-------~~-------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 258 FVTDSEKMSVEYDNCKLLLVDKKITN-------AR-------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred cccCcCCCeEEEeCCEEEEEccccCC-------HH-------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 89999999999999985433 21 22234467888999999999999999999999
Q ss_pred HcCCeEeecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEE-----eeccccccccCCCCCCc
Q 000362 355 EKGMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKK-----FVEEHAGFREGGKRPSK 418 (1617)
Q Consensus 355 ~~gItvv~nVK-----~~~LeRIaR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~-----~~~~~~~~~~~~~~~~K 418 (1617)
..+|.+|+.++ +..|+|||.+|||.+++ +++ +....||+|+.|++.+ ++.+.+ .....+
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~-----~~~i~~ 398 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGST-----QEAVNK 398 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCcc-----HHHHHH
Confidence 88999999985 89999999999999999 677 8888899999999987 322100 001235
Q ss_pred eEEEEEcCC------------C------CceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 419 TLMFIEGCP------------T------RLGCTVL-LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 419 tl~ffeGc~------------~------~~gcTIL-LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
++.+|++|. . ..++||| |||+|..+|+|+||.++||++++++++.+. +|+|||+++..
T Consensus 399 r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ 475 (600)
T PLN03167 399 RVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLR 475 (600)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 778888875 1 1267887 999999999999999999999999999999 99999999875
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.2e-19 Score=201.11 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=138.2
Q ss_pred HHHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEe
Q 000362 324 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKF 402 (1617)
Q Consensus 324 L~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~TGA~IisSid-L~~~~LG~C~~f~v~~~ 402 (1617)
+..+++.|...|+++++||++.++.|.++|.+.+..+|++|.-.+||-||-+||++|++.+. |++.+||+|+.+++..|
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eccccccccCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 403 VEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 403 ~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
+.. ..+++.+|.|++.+.+||.+||+|.-+.+|.||++|||+||++|++.+.+++.|||+.+..
T Consensus 224 gtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 224 GTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 763 4689999999999999999999999999999999999999999999999999999998875
No 51
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.63 E-value=0.0099 Score=80.29 Aligned_cols=100 Identities=9% Similarity=-0.229 Sum_probs=81.3
Q ss_pred CCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEecccccccccHHHH
Q 000362 719 QCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKF 798 (1617)
Q Consensus 719 ~C~sC~~pm~~H~r~YvH~~g~ltI~ve~~~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~~Tp~v~MSd~tw~~SFGKf 798 (1617)
.|..|+.||..|++.|+|..- ...-+...+. ++++ ...|.||++|..|+. .+-+ +|...+|++.+|++
T Consensus 658 ~~~~~~~~~~~~lv~~~es~~--~~~~~s~~~~--~~~l-~e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~ 725 (1598)
T KOG0230|consen 658 LSSYSKGPKQNGLVPAHESVL--NDLHESTLSI--LSKL-PETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEE 725 (1598)
T ss_pred hhhhcCchhhccccccccccc--cccccccccc--cccc-cchhcccchhccccC------cccc-ccccccccccchhh
Confidence 345689999999999999988 3333333333 5665 358999999999999 5888 99999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCCccccceeecccCCeE
Q 000362 799 LELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMV 833 (1617)
Q Consensus 799 LEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~V 833 (1617)
+|-. ....+.+...|.|.+---|.|+| +.++|
T Consensus 726 ~e~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 726 TEEQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hhhh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 9998 44456677889999999999999 88887
No 52
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.75 Score=57.68 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCCCCCCCCccCcccCeeEEEccCCCCCC-ceeEEeEEEeeccCC-------CCCCccccCCcEEEEeee
Q 000362 232 TSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAH-------KHMPTEYKNPRLLLIRGV 303 (1617)
Q Consensus 232 s~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG~~~d-S~vI~GvV~~Knvah-------k~M~~~i~nPrIlLL~~~ 303 (1617)
-.++-+|+..|.++ .-|.|+ -|....| =+++.|+=|.+.... |.+...++||.+||..--
T Consensus 172 g~li~~a~~kvG~~----------GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk 239 (550)
T KOG0356|consen 172 GNLISDAMKKVGRK----------GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK 239 (550)
T ss_pred HHHHHHHHHHhCcC----------CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh
Confidence 34667788877653 123332 3555554 378889988887654 334555667777664322
Q ss_pred cccCccccCcHHHHHHHHHHHHHHHHhHhcCCCeEEEecccccHHHHHHHHHcC----CeE-------eecCChHHHHHH
Q 000362 304 LGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG----MTL-------VFDMKLHRLERV 372 (1617)
Q Consensus 304 LEy~r~el~Sle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g----Itv-------v~nVK~~~LeRI 372 (1617)
+.+=++.+.-+-......+|=||+. ..|+..|+..|.=.+ +-| +.+-+...|.+|
T Consensus 240 -------------i~~v~~ivp~LE~A~~~~~PLliIA-eDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 240 -------------ISSVQSIVPALELALAKRRPLLIIA-EDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred -------------hhHHHHHhHHHHHhhhccCceEEEe-hhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 1122222223333334556655555 578888888775332 222 144577889999
Q ss_pred HHHhCCceecc------cc-CCCCCccccceEEEEEeeccccccccCCCC-------CCc------eEEEEEc-CC----
Q 000362 373 ARCTGSPILSS------GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKR-------PSK------TLMFIEG-CP---- 427 (1617)
Q Consensus 373 aR~TGA~IisS------id-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~-------~~K------tl~ffeG-c~---- 427 (1617)
|-+|||.++.. ++ ....+||+|..+.+-+- +.....+.+.+. .-| +..+-.. ..
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd-~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a 384 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD-DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLA 384 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecC-cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Confidence 99999998843 23 45688999999887651 100000000000 000 0000000 00
Q ss_pred --CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCccccc
Q 000362 428 --TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 477 (1617)
Q Consensus 428 --~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g~Ga~~~~ 477 (1617)
..-..+|-+-|.++-++++-|-.+.||+++.++. .|..+++|||+.+..
T Consensus 385 ~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aa-veeGivpGGG~all~ 435 (550)
T KOG0356|consen 385 KLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAA-VEEGIVPGGGTALLR 435 (550)
T ss_pred HhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHH-hhcCcccCCchHHHH
Confidence 0124667778999999999999999999988777 567899999988754
No 53
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=52.26 E-value=34 Score=33.16 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHH
Q 000362 326 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 375 (1617)
Q Consensus 326 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~ 375 (1617)
.+++.|...++++|+|. +|..-+...|.++||.++.....+.-+-|.+.
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 34556677899999985 58999999999999999998666555555443
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=52.17 E-value=31 Score=37.81 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=36.1
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeE-eecCC--h----HHHHHHHHHhCC
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTL-VFDMK--L----HRLERVARCTGS 378 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItv-v~nVK--~----~~LeRIaR~TGA 378 (1617)
+++|++++|||||....-..-..+.|.+.||.+ +.... . ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999986655554667899999954 44332 1 346677777775
No 55
>PLN02667 inositol polyphosphate multikinase
Probab=46.86 E-value=38 Score=40.63 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=44.8
Q ss_pred cCCcEEEeecC-----HHHHHHHHHHHHH--HHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccC
Q 000362 1377 LDDRFIIKEIK-----KTEFDSFDKFALH--YFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTF 1449 (1617)
Q Consensus 1377 ~D~rFIiKtis-----~~E~~~fl~~lp~--Yf~yi~~~~~~~~~TlL~ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~ 1449 (1617)
.|+..|+|-+. ..|+++...+... .-.. ..-+++++||...+... .|+ .+||||||.+
T Consensus 24 ~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt~ 88 (286)
T PLN02667 24 DDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEAS---DGS----GLLVLEDLLA 88 (286)
T ss_pred cCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccC---CCc----eeEEehHHhc
Confidence 47778899997 7898877655411 0001 23578999999887432 233 3799999998
Q ss_pred CCccceeeecc
Q 000362 1450 ERNITRQYDLK 1460 (1617)
Q Consensus 1450 ~~~i~~~yDLK 1460 (1617)
+..--.+=|||
T Consensus 89 g~~~PcVlDlK 99 (286)
T PLN02667 89 GYTKPCVMDVK 99 (286)
T ss_pred CCCCCeEEEEE
Confidence 85433344554
No 56
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=46.35 E-value=31 Score=40.85 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=40.6
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeec-C-----ChHHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFD-M-----KLHRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~n-V-----K~~~LeRIaR~TGA~ 379 (1617)
+++|++++||+||+....+....+.|.+.||.|+.- . -...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 567999999999998888887888899999987642 2 123477888888865
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.66 E-value=40 Score=38.54 Aligned_cols=52 Identities=13% Similarity=0.339 Sum_probs=38.7
Q ss_pred HHhHhcCCCeEEEecccccHH-HHHHHHHcCCeEeecCC------hHHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTLVFDMK------LHRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~-Al~~L~~~gItvv~nVK------~~~LeRIaR~TGA~ 379 (1617)
+++|++++|||||+...-... ..+.|.+.||.++..-. ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 567999999999997654444 47889999998765321 34478888888875
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=45.12 E-value=38 Score=41.78 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCh-------HHHHHHHHHhCCc
Q 000362 327 VMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKL-------HRLERVARCTGSP 379 (1617)
Q Consensus 327 ~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~-------~~LeRIaR~TGA~ 379 (1617)
=+++|++++|||||+...-.....+.|.+.||.|+.--.. ..++.|++.+|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 3678999999999997555555678899999998654221 3456777777653
No 59
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.49 E-value=67 Score=33.82 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=56.4
Q ss_pred EEeCHHHHHHHHHhcCCChHHHHHHhccC---------------CcCC-CCCCCcce----eEEEecCCcEEE-------
Q 000362 1331 KCLYANQFRDLRSRCCPSELAYIDSLSRC---------------RNWD-AKGGKSKS----FFVKTLDDRFII------- 1383 (1617)
Q Consensus 1331 ~~y~p~~F~~LR~~~~i~e~~yi~SLs~~---------------~~~~-~sgGKSgs----~F~~T~D~rFIi------- 1383 (1617)
++|-...|..+-+..++++.++...+... .+|. ...||||. .||+..+.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 46778899999999999998887655331 1232 35699995 356665555554
Q ss_pred -eecCHHHHHHHHHHHHHHHHHHhh
Q 000362 1384 -KEIKKTEFDSFDKFALHYFKYMNE 1407 (1617)
Q Consensus 1384 -Ktis~~E~~~fl~~lp~Yf~yi~~ 1407 (1617)
-.|+..|++.|.+++..|+.+-.+
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988765
No 60
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=42.86 E-value=45 Score=32.91 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.5
Q ss_pred HHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC
Q 000362 325 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 365 (1617)
Q Consensus 325 ~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK 365 (1617)
..+++.|...++++|+|. ++..-+++.|.++||.++.-..
T Consensus 53 ~~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 446666777999999995 6999999999999999998776
No 61
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.08 E-value=52 Score=37.77 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecC----ChHHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM----KLHRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nV----K~~~LeRIaR~TGA~ 379 (1617)
+++|++++||+||+...... ..+.|.+.|.+++... =...++++++.+|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 46789999999999877666 6677888887766443 235667777777653
No 62
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=36.43 E-value=69 Score=31.50 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC
Q 000362 326 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 365 (1617)
Q Consensus 326 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK 365 (1617)
....-+...++++|+|.+ +..-|+..|.++||.++.-..
T Consensus 52 ~~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 345556778999999975 999999999999999998776
No 63
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=32.04 E-value=86 Score=37.30 Aligned_cols=12 Identities=50% Similarity=0.310 Sum_probs=5.6
Q ss_pred HHHHHHHHhcCC
Q 000362 233 SLSWEAASSLRP 244 (1617)
Q Consensus 233 ~L~~eAv~~V~p 244 (1617)
+.+-+.+..+.|
T Consensus 239 ~~VDel~~slYp 250 (275)
T PF13324_consen 239 PSVDELASSLYP 250 (275)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHhcC
Confidence 344444455554
No 64
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.10 E-value=85 Score=35.40 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.3
Q ss_pred HhHhcCCCeEEEecccc-cHHHHHHHHHcCCeEeecCC-------hHHHHHHHHHhCCc
Q 000362 329 DMIDMCHPNVVLVEKTV-SRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 379 (1617)
Q Consensus 329 ~rI~~~~pnVVLveksV-s~~Al~~L~~~gItvv~nVK-------~~~LeRIaR~TGA~ 379 (1617)
++|++++||+||..... .......+.+.||.++.--. ...++.|++.+|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 67999999999998888 67777778899998886443 34678888888875
No 65
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.06 E-value=1.2e+02 Score=32.02 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=41.7
Q ss_pred HHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHHhCC
Q 000362 326 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 378 (1617)
Q Consensus 326 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~TGA 378 (1617)
.+.+.|++.|+|+|+| ..|.+-|..+|.++||-|..-....+=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4567789999999998 679999999999999999988775555555555443
No 66
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=30.95 E-value=92 Score=35.94 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=37.5
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC--hH----HHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK--LH----RLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK--~~----~LeRIaR~TGA~ 379 (1617)
+++|++++||+||+.........+.|.+.+.+++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45789999999999887776566667777766666653 33 467777777754
No 67
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=27.72 E-value=92 Score=36.44 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHhHhcCCCeEEEeccc-ccHHHHHHHHHcCCeEeecCCh-------HHHHHHHHHhCC
Q 000362 328 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVFDMKL-------HRLERVARCTGS 378 (1617)
Q Consensus 328 V~rI~~~~pnVVLveks-Vs~~Al~~L~~~gItvv~nVK~-------~~LeRIaR~TGA 378 (1617)
+++|++++|||||+..+ -..-..+.|.+.||.++.- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~-~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWV-DATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEe-CCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999998643 2345667799999998764 22 235566666654
No 68
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=47 Score=32.85 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=30.9
Q ss_pred hccCCCCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEec
Q 000362 714 LNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVI 786 (1617)
Q Consensus 714 ~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~ve~~~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~~Tp~v~M 786 (1617)
..+.|.||.|+.+ .| ++.. -.|| .|.+|+....-+.-||.++|
T Consensus 32 ~~~~~~Cp~C~~~--~V---------------kR~a----------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--TV---------------KRIA----------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--ce---------------eeec----------cCeE---EcCCCCCeeccccccccchH
Confidence 5788999999998 22 2221 2588 59999987666777886665
No 69
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.48 E-value=1.3e+02 Score=35.08 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC-------hHHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK-------~~~LeRIaR~TGA~ 379 (1617)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 46789999999998765555556666666766554211 12477788887754
No 70
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=25.07 E-value=51 Score=34.99 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=17.8
Q ss_pred CCcccccceEEeecCCceEEEEEEEeeec
Q 000362 1516 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1544 (1617)
Q Consensus 1516 ~nvMDYSLLvGi~~~~~~l~vGIID~L~~ 1544 (1617)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 3478899999976 599999843
No 71
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.78 E-value=85 Score=36.15 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=32.6
Q ss_pred HHhHhcCCCeEEEecccccHH-HHHHHHH-cCCeEeecCC-------hHHHHHHHHHhCC
Q 000362 328 MDMIDMCHPNVVLVEKTVSRD-IQESILE-KGMTLVFDMK-------LHRLERVARCTGS 378 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~-Al~~L~~-~gItvv~nVK-------~~~LeRIaR~TGA 378 (1617)
+++|++++||+||+....... ..+.|.+ +||.++.--. ...++.+++.+|.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 467999999999997665541 2344544 8888764322 2236666666664
No 72
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=24.59 E-value=44 Score=36.58 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=31.1
Q ss_pred eEEEEeCHHH---HHHHHHhcCCChHHHHHHhccCCcCCCCCCCcceeEEEecCCcEEEee
Q 000362 1328 YSVKCLYANQ---FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKE 1385 (1617)
Q Consensus 1328 ~~~~~y~p~~---F~~LR~~~~i~e~~yi~SLs~~~~~~~sgGKSgs~F~~T~D~rFIiKt 1385 (1617)
-.++-|||.- =..|..+..+.|-+=+-|... +.|+-+++||.|.|.||||=-
T Consensus 100 PavkkYyP~TTnld~~lK~RlnL~EgDPViS~GD------t~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 100 PAVKKYYPGTTNLDQQLKDRLNLTEGDPVISMGD------TTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp TTEEEB-GGG--S-HHHHHHHT--TT-EEEEEEE------TT--EEEEEEETTTTEEEEEE
T ss_pred hhhhhcCCCCccHHHHHHHhhccccCCceeeecC------CCCceEEEEEeccCceEEEEE
Confidence 3467888842 235666666655544444432 579999999999999999853
No 73
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.45 E-value=1.7e+02 Score=35.80 Aligned_cols=56 Identities=9% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCChHHHHHHHHHhCCcee
Q 000362 325 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPIL 381 (1617)
Q Consensus 325 ~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIaR~TGA~Ii 381 (1617)
..+++.|+..+|.+|+...+....+ +.|.++||.++..|..-.+-+.+.-.||+++
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 3467777889999999988877764 7799999999999988777788888888877
No 74
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.02 E-value=1.1e+02 Score=36.94 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHhHhcCCCeEEEeccccc-----HHHHHHHHHcCCeEeecC--------ChHHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVS-----RDIQESILEKGMTLVFDM--------KLHRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs-----~~Al~~L~~~gItvv~nV--------K~~~LeRIaR~TGA~ 379 (1617)
+++|++++|||||...... .-+.+.|.+.||.++.-- -...++.|++.+|..
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 5678999999999865542 346677999998876421 134578888888764
No 75
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.81 E-value=78 Score=34.70 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=26.8
Q ss_pred HHhHhcCCCeEEEecccccHH-HHHHHHHcCCeEe
Q 000362 328 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTLV 361 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~-Al~~L~~~gItvv 361 (1617)
+++|++++|||||....-... ..+.|.+.||.++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 578999999999986655443 7788999998553
No 76
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=22.91 E-value=96 Score=31.28 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEee
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 362 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~ 362 (1617)
++.|++++|||||+..+......+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 35678889999999887766567778888855543
No 77
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=22.69 E-value=57 Score=34.68 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=17.9
Q ss_pred CCcccccceEEeecCCceEEEEEEEeeec
Q 000362 1516 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1544 (1617)
Q Consensus 1516 ~nvMDYSLLvGi~~~~~~l~vGIID~L~~ 1544 (1617)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 3578899999977 599999853
No 78
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=20.83 E-value=1.8e+02 Score=34.81 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=34.9
Q ss_pred HHhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC---h----HHHHHHHHHhCCc
Q 000362 328 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGSP 379 (1617)
Q Consensus 328 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK---~----~~LeRIaR~TGA~ 379 (1617)
+++|++++||+||+...-.....+.|.+.+-+++...+ - ..++.+++.+|-.
T Consensus 94 ~E~I~al~PDLIi~~~~~~~~~~~~L~~~~pv~~~~~~~~~~~~~~~~i~~lg~i~g~e 152 (303)
T PRK11411 94 LEAIAALKPDLIIADSSRHAGVYIALQKIAPTLLLKSRNETYQENLQSAAIIGEVLGKK 152 (303)
T ss_pred HHHHHhCCCCEEEecccccHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 67899999999999665555566777777544443322 1 2356788888853
No 79
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.22 E-value=2.5e+02 Score=28.09 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHhHhcCCCeEEEec-------ccccHHHHHHHHHcCCeEee-cC--ChHHHHHHHHHhCCceeccccCCCCCccccc
Q 000362 326 SVMDMIDMCHPNVVLVE-------KTVSRDIQESILEKGMTLVF-DM--KLHRLERVARCTGSPILSSGSLTSQKLKHCD 395 (1617)
Q Consensus 326 ~~V~rI~~~~pnVVLve-------ksVs~~Al~~L~~~gItvv~-nV--K~~~LeRIaR~TGA~IisSidL~~~~LG~C~ 395 (1617)
..|+++++.++-||+.. -.-+..|.++|.++||.... +| .+...+.+.+.+|..-++.+-+....+|-|+
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d 82 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCD 82 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence 56788888888777765 34567899999999986432 22 3556677888899877766655555566554
Done!