Query 000362
Match_columns 1617
No_of_seqs 339 out of 1796
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 17:10:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000362.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_140-144//hhsearch_pdb/000362hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 568.2 23.2 251 1325-1586 74-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 559.9 15.8 249 1325-1586 66-391 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 401.4 27.5 257 209-478 138-406 (515)
4 3iyg_A T-complex protein 1 sub 1.0 1 1 383.5 27.0 257 208-478 139-413 (529)
5 3aq1_B Thermosome subunit; gro 1.0 1 1 382.9 24.0 258 208-478 101-369 (500)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 381.8 25.5 256 208-478 149-416 (543)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 379.7 26.0 257 208-478 151-418 (548)
8 3p9d_F T-complex protein 1 sub 1.0 1 1 379.3 15.5 254 209-478 148-422 (546)
9 1a6d_A Thermosome (alpha subun 1.0 1 1 378.8 24.9 257 208-478 148-415 (545)
10 3iyg_Z T-complex protein 1 sub 1.0 1 1 378.6 24.5 252 209-478 138-410 (517)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=568.25 Aligned_cols=251 Identities=26% Similarity=0.460 Sum_probs=228.9
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 97549999099999999986099958899973247768-89998754018973278389860599999999999999999
Q 000362 1325 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK 1403 (1617)
Q Consensus 1325 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SL~~~~~~-~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~ 1403 (1617)
+.+|+|++|||.+|++||++||+++++|++||++|..| .+++|||||+||+|.|+|||||||++.|+++|+++||.||+
T Consensus 74 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~ 153 (394)
T 2ybx_A 74 PSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQ 153 (394)
T ss_dssp CSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 88749999788999999998297999999985478764247899866879981797289996199999999999999999
Q ss_pred HHHHHCCCCCCCCHHEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 996412799983023111067885205899951148999982036887-522356225753345556789--99852124
Q 000362 1404 YMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLLD 1480 (1617)
Q Consensus 1404 yi~~~~~~~~~TlL~Ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~D 1480 (1617)
||.++ +++|||+||||+|+|++. |+ +.+||||+|+|+++ .|+++||||||+++|++..++ +...||||
T Consensus 154 ~~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD 224 (394)
T 2ybx_A 154 YIVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224 (394)
T ss_dssp HHHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECH
T ss_pred HHHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 99840---898676653178999989----90--7999999367788764201002056445776675344567654111
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC------------------------------
Q ss_conf 00231038987100978999999999853410136985344203875447------------------------------
Q 000362 1481 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ------------------------------ 1530 (1617)
Q Consensus 1481 ~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~------------------------------ 1530 (1617)
+||++.. .+|+|+++.|+.|++||++||.||+++|||||||||||+..
T Consensus 225 ~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (394)
T 2ybx_A 225 NDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTP 302 (394)
T ss_dssp HHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------
T ss_pred CCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1367469--81997899999999999999999987787664048777315543200002445555433445655445787
Q ss_pred ------------------------------------CCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf ------------------------------------72599979975402581246888776605899998852493679
Q 000362 1531 ------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDY 1574 (1617)
Q Consensus 1531 ------------------------------------~~~l~iGIID~Lr~yt~~KklE~~~K~~~~~~~~~~Tvi~P~~Y 1574 (1617)
+.+||+|||||||+|||+||+|+|+|++..+.+..+|||+|++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS~V~P~~Y 382 (394)
T 2ybx_A 303 PDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAGAEISTVNPEQY 382 (394)
T ss_dssp ------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC-------------------CCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 55534444322223655456444323434555777743799999986310784089999999861589999856998999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999995213
Q 000362 1575 KRRFRKFMSTHF 1586 (1617)
Q Consensus 1575 ~~RF~~~m~~yf 1586 (1617)
++||++||+++|
T Consensus 383 ~~RF~~fm~~if 394 (394)
T 2ybx_A 383 SKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=559.92 Aligned_cols=249 Identities=27% Similarity=0.475 Sum_probs=227.0
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 97549999099999999986099958899973247768899987540189732783898605999999999999999999
Q 000362 1325 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKY 1404 (1617)
Q Consensus 1325 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SL~~~~~~~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~y 1404 (1617)
+.+|+|++|||.+|++||++||+++++|++||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 66 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 143 (392)
T 2gk9_A 66 PSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQY 143 (392)
T ss_dssp CSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 886499997979999999980989899998743787455-798762-379869986899960999999999999999999
Q ss_pred HHHHCCCCCCCCHHEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCCCH
Q ss_conf 96412799983023111067885205899951148999982036887-5223562257533455567899--98521240
Q 000362 1405 MNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVDG--SGDVLLDQ 1481 (1617)
Q Consensus 1405 i~~~~~~~~~TlL~Ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~--~~~vl~D~ 1481 (1617)
|.++ +++|||+||||+|+|++. |+ +.+||||+|+|+++ .|+++||||||+++|++...+. ...||||+
T Consensus 144 ~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 214 (392)
T 2gk9_A 144 IVKC---HGNTLLPQFLGMYRVSVD----NE--DSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDM 214 (392)
T ss_dssp HHHT---TSCSSSCCEEEEEECCBS----SC--CCEEEEEECSSCSSSCCSCCCEECC-----------------CCBTT
T ss_pred HHHH---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---798655653068999989----90--79999993677887641034450565457766752235666611131
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC------------------------------
Q ss_conf 02310389871009789999999998534101369853442038754477------------------------------
Q 000362 1482 NFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR------------------------------ 1531 (1617)
Q Consensus 1482 n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~------------------------------ 1531 (1617)
||++.. .+|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 215 df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (392)
T 2gk9_A 215 DFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPAL 292 (392)
T ss_dssp C--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC-------------------------------
T ss_pred CHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 156259--869878999999999999999999876876630587663155432112222344555545553323456432
Q ss_pred --------------------------------------------CEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf --------------------------------------------259997997540258124688877660589999885
Q 000362 1532 --------------------------------------------RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPT 1567 (1617)
Q Consensus 1532 --------------------------------------------~~l~iGIID~Lr~yt~~KklE~~~K~~~~~~~~~~T 1567 (1617)
.+||+|||||||+|||+||+|||+|++..+.+..+|
T Consensus 293 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS 372 (392)
T 2gk9_A 293 VGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEIS 372 (392)
T ss_dssp --------------------------------------------CBCCCEECCCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 24567885453333432222366656544432343455567775279999977400087008999999986157899974
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q ss_conf 2493679999999995213
Q 000362 1568 VISPKDYKRRFRKFMSTHF 1586 (1617)
Q Consensus 1568 vi~P~~Y~~RF~~~m~~yf 1586 (1617)
||+|++|++||++||+++|
T Consensus 373 ~v~P~~Y~~RF~~fm~~~~ 391 (392)
T 2gk9_A 373 TVHPEQYAKRFLDFITNIF 391 (392)
T ss_dssp --CHHHHHHHHHHHTC---
T ss_pred EECHHHHHHHHHHHHHHHH
T ss_conf 6898999999999999960
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=401.38 Aligned_cols=257 Identities=21% Similarity=0.396 Sum_probs=241.2
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99998633357787730389999999999997127899899866923570699812899777325984899313678999
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~M 288 (1617)
..|++.+.+++++|..+.|.+.+++++++|+..|.++......+|+.+||+|+|++||++.||++|+|++|+|.+.|++|
T Consensus 138 ~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m 217 (515)
T 3iyg_G 138 DTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRM 217 (515)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 99999999871487525579999999999998423356888545642305899836998010168841798278789888
Q ss_pred CCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 7301598389995304657656------67---4788-999999999999767207981999556631999999998498
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 358 (1617)
Q Consensus 289 p~~i~nPrILLL~~~LEy~k~~------l~---Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~gI 358 (1617)
|++++||||||++|||||++.+ ++ .+++ +++|++|++++|++|++.||+||+++++|+++|++||.++||
T Consensus 218 ~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I 297 (515)
T 3iyg_G 218 RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANI 297 (515)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 61444107999815554442346742896789999999999999999999999947998999788667899999987895
Q ss_pred EEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCC-CCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 686069967899999994993611256-89997311-2129999931233454468988982499998589996589997
Q 000362 359 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 359 ~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 436 (1617)
++++++++.+|+|||++|||+|+++++ +++..||+ |+.|+++++++ ++|+||+||+.+.+|||+|
T Consensus 298 ~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIll 364 (515)
T 3iyg_G 298 TAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTILL 364 (515)
T ss_pred EEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 666667889999999995992642102367666287562899999878-------------1699995788887689998
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999765290650697002358
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 437 RG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
||+|+.+|+|+||+++||+++++++..+..+|+||||+|...
T Consensus 365 rG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~ 406 (515)
T 3iyg_G 365 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 406 (515)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 489889999999999999999999962896893788999999
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=383.51 Aligned_cols=257 Identities=18% Similarity=0.233 Sum_probs=237.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999998633357787730389999999999997127899899-8669235706998128997773259848993136789
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 286 (1617)
Q Consensus 208 ~~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk 286 (1617)
...|++.+.+++++|....|.+.|++|+++|+..|.+...+| ..+|+ ++|+|++++||++.||++|+|++|+|.+.|+
T Consensus 139 ~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~ 217 (529)
T 3iyg_A 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQ 217 (529)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 899999999985667553207899999999999975124478766654-4179999559885543899616874586435
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 997301598389995304657656------67---4788-9999999999997672079819995566319999999984
Q 000362 287 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 356 (1617)
Q Consensus 287 ~Mp~~i~nPrILLL~~~LEy~k~~------l~---Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~ 356 (1617)
.||++++||||+|++|+|||++.+ +. .++. .++|++|++.++++|++.|+|||+++++|+++|++||.++
T Consensus 218 ~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~ 297 (529)
T 3iyg_A 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 297 (529)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 68751688669996277654535678549968999999999999999999999999549989998788778999999986
Q ss_pred CCEEEECCCHHHHHHHHHHHCCCEECCCC-CC------CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 98686069967899999994993611256-89------997311212999993123345446898898249999858999
Q 000362 357 GMTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR 429 (1617)
Q Consensus 357 gI~vv~nVK~~~LeRIAr~TGA~IisSid-L~------~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~ 429 (1617)
||++++++++.+|+|||++|||.|+++++ +. +.+||+|+.|++++++. ++|+||+||+.+
T Consensus 298 gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~ 364 (529)
T 3iyg_A 298 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKAR 364 (529)
T ss_pred CCCEECCCCHHHHHHHHHHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCC
T ss_conf 9803634798889999998599566140104531005763376543899998679-------------539999757998
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 6589997079998999999999999999999765290650697002358
Q 000362 430 LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 430 ~gcTILLRG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
.+|||+|||+++.+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 365 ~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~l 413 (529)
T 3iyg_A 365 TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAAL 413 (529)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 6589997786277999999999999999999963890884786799999
No 5
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=382.90 Aligned_cols=258 Identities=22% Similarity=0.355 Sum_probs=240.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863335778773038999999999999712789989986692357069981289977732598489931367899
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 208 ~~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~ 287 (1617)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+.++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 101 ~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 180 (500)
T 3aq1_B 101 EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180 (500)
T ss_dssp HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 78999999998623113555789999999999996133468744451122799983589800117882269940578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97301598389995304657656---------674788-99999999999976720798199955663199999999849
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 Mp~~i~nPrILLL~~~LEy~k~~---------l~Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~g 357 (1617)
||++++||||||++|+|||++.+ ..+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 181 m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 260 (500)
T 3aq1_B 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAG 260 (500)
T ss_dssp SCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85443598799993776666544632476489999999999999999999999997493999987776779999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069967899999994993611256-899973112129999931233454468988982499998589996589997
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 I~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 436 (1617)
|++++++++.+|+|||++|||.++++++ +++..||+|+.|++++++. ++|+||+||+.+..|||+|
T Consensus 261 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 327 (500)
T 3aq1_B 261 IYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLL 327 (500)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEE
T ss_conf 899972799999999998499574560118986788760899998457-------------6899997788875699993
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999765290650697002358
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 437 RG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
||+++.+|+|+||+++||+++++++..++++|+||||++...
T Consensus 328 rG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 328 HGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 589677999999999989999999997888788872999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=381.76 Aligned_cols=256 Identities=21% Similarity=0.353 Sum_probs=240.9
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999998633357787730389999999999997127899899-8669235706998128997773259848993136789
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 286 (1617)
Q Consensus 208 ~~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk 286 (1617)
...|++.+.+++++|....|.+.|++|+++|+..|.++. .| +.+|+ ++|+|+|++||+..||++++|++|+|.+.|+
T Consensus 149 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~-~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~ 226 (543)
T 1a6d_B 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELR-DGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHP 226 (543)
T ss_dssp HHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEEC-SSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSST
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCC
T ss_conf 799999999985254244547799999999999845333-68744334-4489998368981222687348983177888
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 997301598389995304657656------6---74788-9999999999997672079819995566319999999984
Q 000362 287 HMPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 356 (1617)
Q Consensus 287 ~Mp~~i~nPrILLL~~~LEy~k~~------l---~Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~ 356 (1617)
.||++++||||||++++|||++.+ + .+++. +++|++|++.++++|+..|++||+++++|++.|++||.++
T Consensus 227 ~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~ 306 (543)
T 1a6d_B 227 GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRA 306 (543)
T ss_dssp TSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHT
T ss_pred CCCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 87533138769999245564434577438968899999999999999999999999729989998888688999999878
Q ss_pred CCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 98686069967899999994993611256-89997311212999993123345446898898249999858999658999
Q 000362 357 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 435 (1617)
Q Consensus 357 gI~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~~gcTIL 435 (1617)
||++++++++.+|+|||++|||.|+++++ +++..||+|+.|++++++. ++|+||+||+.+.+|||+
T Consensus 307 ~I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~ 373 (543)
T 1a6d_B 307 GIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSIL 373 (543)
T ss_dssp TCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEE
T ss_conf 9668646899999999998299265551449987788763899999668-------------149999668887559999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 7079998999999999999999999765290650697002358
Q 000362 436 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 436 LRG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
|||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 374 lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 374 VRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 6579777999999999999999999997888167864999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=379.70 Aligned_cols=257 Identities=24% Similarity=0.389 Sum_probs=240.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863335778773038999999999999712789989986692357069981289977732598489931367899
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 208 ~~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~ 287 (1617)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++|+|++|+|.+.|+.
T Consensus 151 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 229 (548)
T 1q3q_A 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPR 229 (548)
T ss_dssp HHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 89999999987503002455579999999999984434578754557-73899994489830238971089841577899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97301598389995304657656------67---4788-99999999999976720798199955663199999999849
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 Mp~~i~nPrILLL~~~LEy~k~~------l~---Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~g 357 (1617)
||++++||||||++++|||++.+ ++ +++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (548)
T 1q3q_A 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG 309 (548)
T ss_dssp SCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85651488799992676754346784399688999999999999999999999998596999986785889999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069967899999994993611256-899973112129999931233454468988982499998589996589997
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 I~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 436 (1617)
|++|+++++.+|+|||++|||.++++++ +++..||+|+.|++++++. ++|+||+||+.+..|||+|
T Consensus 310 I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 376 (548)
T 1q3q_A 310 IMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILI 376 (548)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEE
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 578733799999999998599475552549987788763899999668-------------3399996589997699997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999765290650697002358
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 437 RG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
||+++.+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 377 rG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 377 RGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 789767899999999979999999997788056875999999
No 8
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=379.25 Aligned_cols=254 Identities=19% Similarity=0.260 Sum_probs=236.7
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99998633357787730389999999999997127899899866923570699812899777325984899313678999
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~M 288 (1617)
..|++.+.+++++|....|.+.|++++++|+..|.+. .+..+|+ ++|+|+|++||+..||++|+|++|+|.+.|++|
T Consensus 148 ~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m 224 (546)
T 3p9d_F 148 EFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM 224 (546)
T ss_dssp HHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 9999999998178764459999999998862574037--8986662-026999955887121279866998246665567
Q ss_pred CCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCC----------CEEEEECCCCCHH
Q ss_conf 7301598389995304657656---------674788-9999999999997672079----------8199955663199
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCH----------PNVVLVEKTVSRD 348 (1617)
Q Consensus 289 p~~i~nPrILLL~~~LEy~k~~---------l~Sle~-i~qE~eyL~~~V~kI~~~~----------pnVVLveksVs~~ 348 (1617)
|++++||+|||++|+|||++.+ ..+++. +++|++++++.+++|..++ |+||+++|+|++.
T Consensus 225 ~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~ 304 (546)
T 3p9d_F 225 PTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPM 304 (546)
T ss_dssp CSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHH
T ss_pred CCEECCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 52630766999627666554556744997689999999999999999999999999998742015886499846767689
Q ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 9999998498686069967899999994993611256-899973112129999931233454468988982499998589
Q 000362 349 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 427 (1617)
Q Consensus 349 A~~~L~~~gI~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~ 427 (1617)
|++||.++||++++++++.+|+|||++|||+++++++ +++..||+|+.|++++++. ++++||+||+
T Consensus 305 Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~ 371 (546)
T 3p9d_F 305 SLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENT 371 (546)
T ss_dssp HHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCS
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCC
T ss_conf 999999889846813798889999998598794562008986788562799998469-------------4699995689
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 996589997079998999999999999999999765290650697002358
Q 000362 428 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 428 ~~~gcTILLRG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
.+.+|||+|||+|+.+|+|+||.++||++++++++.++++|+||||+|...
T Consensus 372 ~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp CCSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 975589997798778999999999999999999833995995887999999
No 9
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=378.75 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=241.0
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863335778773038999999999999712789989986692357069981289977732598489931367899
Q 000362 208 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 287 (1617)
Q Consensus 208 ~~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~ 287 (1617)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++|+|++|+|.+.|+.
T Consensus 148 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 226 (545)
T 1a6d_A 148 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK 226 (545)
T ss_dssp HHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 99999999998735403454779999999999997233678753434-31799995589720027884079822578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97301598389995304657656---------674788-99999999999976720798199955663199999999849
Q 000362 288 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 357 (1617)
Q Consensus 288 Mp~~i~nPrILLL~~~LEy~k~~---------l~Sle~-i~qE~eyL~~~V~kI~~~~pnVVLveksVs~~A~~~L~~~g 357 (1617)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 227 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 306 (545)
T 1a6d_A 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306 (545)
T ss_dssp SCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85640588799991677755346784399678999999999999999999999997299899987886689999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069967899999994993611256-899973112129999931233454468988982499998589996589997
Q 000362 358 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 436 (1617)
Q Consensus 358 I~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 436 (1617)
|++|+++++.+|+|||++|||.++++++ +++..||+|+.|++++++. ++|+||+||..+..|||+|
T Consensus 307 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 373 (545)
T 1a6d_A 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILI 373 (545)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 267524899999999998599254660329987778862899999558-------------3499996688874589997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999765290650697002358
Q 000362 437 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 437 RG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
||+++.+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 374 rG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 374 RGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 689889999999999999999999986898886857999999
No 10
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=378.56 Aligned_cols=252 Identities=19% Similarity=0.269 Sum_probs=236.0
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99998633357787730389999999999997127899899866923570699812899777325984899313678999
Q 000362 209 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 288 (1617)
Q Consensus 209 ~qLL~~~~i~l~sK~~~~w~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~dS~lI~GVV~~Knvahk~M 288 (1617)
..|++.+.+++++|....|.+.|++++++|+..|.+. +..+|+ ++|+|+|++||+..||++|+|++|+|...|+.|
T Consensus 138 ~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~---~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m 213 (517)
T 3iyg_Z 138 ETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ---DEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHPDM 213 (517)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC---CCCCCH-HHHEEEEECCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 9999999987045542047889999999886033147---876773-571366514887320005754798325778776
Q ss_pred CCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCE---------EEEECCCCCHHH
Q ss_conf 7301598389995304657656------6---74788-999999999999767207981---------999556631999
Q 000362 289 PTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPN---------VVLVEKTVSRDI 349 (1617)
Q Consensus 289 p~~i~nPrILLL~~~LEy~k~~------l---~Sle~-i~qE~eyL~~~V~kI~~~~pn---------VVLveksVs~~A 349 (1617)
|++++||+||+++++|||++.+ + .+++. +++|++|++..+++|..++++ ||+++++|+++|
T Consensus 214 ~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~a 293 (517)
T 3iyg_Z 214 KKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFS 293 (517)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 43223874999536655554445416996899999999999999999999999985055541257863897356678799
Q ss_pred HHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCC-CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 999998498686069967899999994993611256-89997-3112129999931233454468988982499998589
Q 000362 350 QESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQK-LKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 427 (1617)
Q Consensus 350 ~~~L~~~gI~vv~nVK~~~LeRIAr~TGA~IisSid-L~~~~-LG~C~~f~v~~~~~~~~~~~~~~k~~~Ktliffegc~ 427 (1617)
++||.++||++++++++.+|+|||++|||.|+++++ +++.. ||+|+ |++++++. ++++||+||+
T Consensus 294 l~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~~ 359 (517)
T 3iyg_Z 294 LDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKCN 359 (517)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECCC
T ss_conf 999998798799825799999999986997854534275000477514-99999768-------------2589994789
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 996589997079998999999999999999999765290650697002358
Q 000362 428 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 478 (1617)
Q Consensus 428 ~~~gcTILLRG~s~~~L~evKr~l~~ai~v~~~l~lE~s~l~ggGa~~~~~ 478 (1617)
.+.+|||+|||+|+.+|+|+||+++||+++++++..++++|+||||+|...
T Consensus 360 ~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 360 NPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred CCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 833443431488678999999999988999999973661854862899999
Done!