BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000366
(1612 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Mus musculus GN=Smchd1
PE=1 SV=2
Length = 2007
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 163 ALADLIDNSLQAVWTNAKNERRLISVNIAEDK------ISVFDTGPGMDSTDENS----- 211
ALA+LIDNSL A T+ N R I + + D+ ++V D G GM S N+
Sbjct: 144 ALAELIDNSLSA--TSRNNGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYR 201
Query: 212 IVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKE 271
+ K+ + G S P L FG GG A +G+ A + SK SK+
Sbjct: 202 LSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPIDSKD 261
Query: 272 VYTLHLEKE 280
V+ L L KE
Sbjct: 262 VHELVLSKE 270
>sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Homo sapiens GN=SMCHD1
PE=1 SV=2
Length = 2005
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 163 ALADLIDNSLQAVWTNAKNERRLISVNIAEDK----ISVFDTGPGMDSTDENS-----IV 213
ALA+LIDNSL A N R I + E + ++V D G GM S N+ +
Sbjct: 144 ALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQLNNWAVYRLS 203
Query: 214 KWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVY 273
K+ + G S P L FG GG A +G+ A + SK S++V+
Sbjct: 204 KFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVH 263
Query: 274 TLHLEKE 280
L L KE
Sbjct: 264 ELVLSKE 270
>sp|Q99109|REP1_USTMA Repellent protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REP1 PE=1 SV=1
Length = 652
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 35/176 (19%)
Query: 86 KRKRKINWNGGNLYVEDANLNKISD----TINFEMFEPSKCHI---------LKLYDGSG 132
KR K + G +E N NK+ D T N + + +I YDG
Sbjct: 264 KRGDKYTYYNGGHNIESTNENKLIDLSDLTANVGVLDDVHVNIGLLDKRTDKYSYYDGGH 323
Query: 133 EIAKTFEN----MWDLTPDTDLLRELPEDYTFETALAD--------LIDNSLQAVWTNAK 180
I T EN + DL + D+L++ + +++ + LID S NA
Sbjct: 324 NIELTNENKLIDLSDLLANVDVLKKRTDKFSYYNGGHNVESDTQNKLIDVSHLTAIVNAL 383
Query: 181 NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKA--QGIGGK 234
++R DK S ++ G ++ST+EN ++ + A ++ SK +G G K
Sbjct: 384 SKRT--------DKYSYYNGGHNVESTNENKLIDLSDLTALVNVLSKRSLKGYGSK 431
>sp|Q9UYZ1|VORA_PYRAB Ketoisovalerate oxidoreductase subunit VorA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=vorA PE=4 SV=1
Length = 395
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 717 LHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLP 776
LH + LPI ++D + + +VWD Q + Q+ ++ E QE+ DGVL
Sbjct: 96 LHWAAGARLPIVMVDVNRAMAPPWSVWDDQTDSLSQRDTGWMQFYAENN-QEV-YDGVLM 153
Query: 777 SSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVV 836
+ +A E V V PA + S+ +I+ ++ E++ + + DE L
Sbjct: 154 AFKVA------ETVNV--PAMVVESA--------FILSHTYEIVNMIPQELVDEFLPPRK 197
Query: 837 PLYT 840
PLY+
Sbjct: 198 PLYS 201
>sp|Q58750|Y1355_METJA Uncharacterized protein MJ1355 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1355 PE=4 SV=1
Length = 571
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 683 LQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASL-HIGSSLSLPIGVIDSEKCVPVNKN 741
+QG GG+ + I + L + KG + + N L +G + I + ++ +
Sbjct: 427 IQGHVGGDEKEIIKSLGEAESKGFIKELQNKMIKLTELGEEVKTAIEMAKIQELLATKFA 486
Query: 742 VWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISS 801
V +P+T +LK + E D V + ++ EIV + + S
Sbjct: 487 V-----------TPTTFNILKTIYDHKEEFDKVWKEKSEGKEHKENEIVLLAKYLSLTPE 535
Query: 802 SASKNLVQKYIVKN 815
KNLV I+KN
Sbjct: 536 EIKKNLV---ILKN 546
>sp|Q8GYY0|1A112_ARATH Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2
SV=2
Length = 495
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 1529 ILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEK 1588
I DGII LG T+CF +++ +S +E++ Q ++ + ++ I A+ K
Sbjct: 99 ITNTDGIIQLGLAESTLCFDLLQRWMSENLMESMMQSDDGEFDISSI---------AMYK 149
Query: 1589 DLEKLKNSEDKFNSFM 1604
E L F FM
Sbjct: 150 PFEGLLELRVAFADFM 165
>sp|Q10425|EIF3B_SCHPO Eukaryotic translation initiation factor 3 subunit B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.08 PE=1 SV=1
Length = 725
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 179 AKNERRLISVNIAEDKISVFDTGPGMDSTDENSI-------VKWGKMGASLHRASKAQGI 231
+ +++ L V + + ISV++T P + D+ +I +W + +L R SK Q
Sbjct: 316 SADDKYLARVTVGQ-SISVYET-PSLALVDKKTIKIDGVQNFEWCPVSDALGRDSKEQ-- 371
Query: 232 GGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELT 291
+ Y P + R AL+S +K + + + L SD +L
Sbjct: 372 ------------LLAYWTPEITNQPARVALISIPSKST-------IRTKNLFNVSDCKLY 412
Query: 292 WRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDI 339
W++NG D + +F+ +EI+ + K++ V+ + LKD+
Sbjct: 413 WQSNGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVD--LKDV 458
>sp|Q8UDF7|CARA_AGRT5 Carbamoyl-phosphate synthase small chain OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=carA PE=3 SV=2
Length = 401
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1219 KVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLC 1278
KV +V A + ++DI DG VFL GP G + VP+++ N ++SE+ +G+C
Sbjct: 229 KVTVVPA-QTSAEDILALKPDG-VFLSNGPGDPAATGEYAVPVIQ--NLIKSELPIFGIC 284
Query: 1279 IGRHEKALKL 1288
+G L +
Sbjct: 285 LGHQMLGLAV 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,930,340
Number of Sequences: 539616
Number of extensions: 27061938
Number of successful extensions: 67530
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 67519
Number of HSP's gapped (non-prelim): 16
length of query: 1612
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1481
effective length of database: 120,879,763
effective search space: 179022929003
effective search space used: 179022929003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)