Query 000366
Match_columns 1612
No_of_seqs 346 out of 1016
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.8 6.3E-19 1.4E-23 233.9 15.5 140 1350-1542 514-658 (1163)
2 PF13589 HATPase_c_3: Histidin 99.7 9.3E-18 2E-22 173.0 7.0 132 158-313 1-137 (137)
3 TIGR02169 SMC_prok_A chromosom 99.7 2E-16 4.3E-21 208.8 21.2 140 1350-1541 520-660 (1164)
4 COG0326 HtpG Molecular chapero 99.7 2.5E-17 5.5E-22 201.2 11.8 226 142-392 7-262 (623)
5 KOG0996 Structural maintenance 99.7 2.6E-16 5.6E-21 197.9 19.9 143 1347-1542 612-760 (1293)
6 PTZ00130 heat shock protein 90 99.7 2.6E-16 5.6E-21 198.0 11.4 251 119-394 47-362 (814)
7 PRK05218 heat shock protein 90 99.6 5E-15 1.1E-19 185.3 19.2 221 142-391 6-253 (613)
8 PRK14083 HSP90 family protein; 99.6 3.1E-15 6.6E-20 186.2 13.5 210 144-392 5-239 (601)
9 KOG0933 Structural maintenance 99.6 7.9E-15 1.7E-19 182.4 15.2 279 1265-1600 408-717 (1174)
10 PTZ00272 heat shock protein 83 99.5 2.3E-14 5E-19 180.3 13.4 180 142-346 5-205 (701)
11 KOG0018 Structural maintenance 99.5 1.8E-13 3.9E-18 172.0 19.3 142 1349-1542 500-646 (1141)
12 KOG0964 Structural maintenance 99.5 7.2E-13 1.6E-17 164.6 18.4 138 1350-1542 521-661 (1200)
13 COG0323 MutL DNA mismatch repa 99.3 1.9E-12 4.1E-17 162.8 10.8 120 142-279 5-128 (638)
14 PF06470 SMC_hinge: SMC protei 99.3 4.2E-12 9.1E-17 126.7 9.7 117 1351-1517 2-119 (120)
15 TIGR00585 mutl DNA mismatch re 99.2 3.8E-11 8.2E-16 139.8 11.4 118 143-276 5-125 (312)
16 PRK00095 mutL DNA mismatch rep 99.1 1.9E-10 4.2E-15 145.0 12.1 119 143-278 5-126 (617)
17 KOG0019 Molecular chaperone (H 99.0 4.5E-10 9.7E-15 136.4 6.3 225 140-397 35-280 (656)
18 KOG1979 DNA mismatch repair pr 98.9 3.8E-09 8.2E-14 127.7 11.8 161 152-350 19-191 (694)
19 KOG0020 Endoplasmic reticulum 98.8 1.3E-08 2.9E-13 120.4 9.0 182 142-345 75-279 (785)
20 COG1389 DNA topoisomerase VI, 98.8 1.9E-08 4.2E-13 119.5 10.2 108 158-278 35-149 (538)
21 KOG1978 DNA mismatch repair pr 98.7 4.4E-08 9.5E-13 121.3 9.5 105 157-279 18-125 (672)
22 TIGR02168 SMC_prok_B chromosom 98.5 1.9E-06 4.2E-11 114.7 20.0 143 1350-1540 518-665 (1179)
23 KOG1977 DNA mismatch repair pr 98.5 7.8E-08 1.7E-12 117.6 4.2 162 151-346 13-189 (1142)
24 PRK14868 DNA topoisomerase VI 98.4 1.5E-06 3.2E-11 110.2 13.8 108 159-279 46-161 (795)
25 PRK04184 DNA topoisomerase VI 98.3 4.8E-06 1E-10 103.5 15.2 107 159-278 36-151 (535)
26 TIGR01052 top6b DNA topoisomer 98.3 4.2E-06 9.1E-11 103.1 12.2 108 159-279 28-142 (488)
27 PRK05559 DNA topoisomerase IV 98.2 5.8E-06 1.3E-10 105.2 12.3 131 129-271 9-143 (631)
28 TIGR01055 parE_Gneg DNA topois 98.2 5.9E-06 1.3E-10 105.0 10.2 94 158-270 29-135 (625)
29 TIGR01059 gyrB DNA gyrase, B s 98.1 1E-05 2.3E-10 103.4 12.3 103 158-270 29-135 (654)
30 PRK05644 gyrB DNA gyrase subun 98.1 1.1E-05 2.4E-10 102.9 12.2 109 158-278 36-148 (638)
31 PRK14867 DNA topoisomerase VI 98.1 3.8E-05 8.3E-10 97.4 15.2 107 159-278 36-150 (659)
32 smart00433 TOP2c Topoisomerase 98.0 1.6E-05 3.5E-10 100.7 10.3 99 163-270 5-106 (594)
33 PRK14939 gyrB DNA gyrase subun 97.9 4E-05 8.7E-10 98.9 11.0 99 158-270 36-142 (756)
34 PF02518 HATPase_c: Histidine 97.7 0.00017 3.7E-09 70.9 9.9 99 160-278 6-109 (111)
35 TIGR01058 parE_Gpos DNA topois 97.4 0.00089 1.9E-08 85.8 12.2 108 158-273 33-142 (637)
36 PLN03128 DNA topoisomerase 2; 97.0 0.0027 5.8E-08 85.5 11.7 99 159-265 52-154 (1135)
37 KOG0250 DNA repair protein RAD 96.9 0.0078 1.7E-07 79.2 13.3 130 1266-1399 382-540 (1074)
38 PLN03237 DNA topoisomerase 2; 96.8 0.0053 1.2E-07 83.6 11.9 100 158-265 76-179 (1465)
39 COG0187 GyrB Type IIA topoisom 96.6 0.008 1.7E-07 75.8 10.5 103 158-270 35-141 (635)
40 PTZ00108 DNA topoisomerase 2-l 96.5 0.0071 1.5E-07 82.6 9.1 122 138-267 34-164 (1388)
41 PHA02569 39 DNA topoisomerase 96.4 0.013 2.8E-07 75.0 10.6 103 160-267 46-151 (602)
42 COG3290 CitA Signal transducti 96.4 0.013 2.8E-07 73.1 10.0 101 158-279 426-531 (537)
43 smart00387 HATPase_c Histidine 96.4 0.029 6.3E-07 52.7 10.3 49 160-211 6-56 (111)
44 cd00075 HATPase_c Histidine ki 96.3 0.021 4.6E-07 52.7 8.6 88 160-266 1-93 (103)
45 PRK10604 sensor protein RstB; 96.1 0.034 7.3E-07 67.9 11.7 98 159-277 319-421 (433)
46 PTZ00109 DNA gyrase subunit b; 95.9 0.0084 1.8E-07 78.5 5.7 77 128-208 100-176 (903)
47 PRK10755 sensor protein BasS/P 95.9 0.039 8.4E-07 64.9 10.6 98 159-278 247-349 (356)
48 PRK09470 cpxA two-component se 95.7 0.048 1E-06 65.8 10.3 89 160-268 354-447 (461)
49 PRK09467 envZ osmolarity senso 95.7 0.05 1.1E-06 65.4 10.4 88 159-268 331-423 (435)
50 PRK11006 phoR phosphate regulo 95.7 0.072 1.6E-06 64.6 11.8 102 159-279 317-423 (430)
51 PRK10364 sensor protein ZraS; 95.5 0.073 1.6E-06 65.1 11.3 95 159-278 348-447 (457)
52 PRK09303 adaptive-response sen 95.4 0.08 1.7E-06 63.8 11.0 90 159-268 272-367 (380)
53 PRK15053 dpiB sensor histidine 95.4 0.097 2.1E-06 65.2 11.7 100 160-278 433-538 (545)
54 TIGR01386 cztS_silS_copS heavy 95.3 0.11 2.3E-06 62.5 11.5 50 159-211 353-404 (457)
55 PRK11100 sensory histidine kin 95.1 0.093 2E-06 63.2 10.0 91 159-268 368-463 (475)
56 TIGR02916 PEP_his_kin putative 95.1 0.1 2.2E-06 67.7 11.0 86 159-267 579-669 (679)
57 PRK10549 signal transduction h 95.0 0.12 2.5E-06 62.8 10.6 92 159-268 352-448 (466)
58 TIGR02966 phoR_proteo phosphat 94.8 0.19 4.2E-06 57.1 11.1 91 159-267 229-324 (333)
59 PRK15347 two component system 94.7 0.13 2.9E-06 68.0 10.8 96 159-278 513-613 (921)
60 COG0642 BaeS Signal transducti 94.6 0.14 3E-06 57.0 9.3 50 158-211 227-278 (336)
61 PRK10337 sensor protein QseC; 94.6 0.11 2.4E-06 63.0 9.1 87 159-268 352-441 (449)
62 TIGR01925 spIIAB anti-sigma F 94.6 0.24 5.2E-06 51.0 10.1 48 159-206 39-88 (137)
63 TIGR03785 marine_sort_HK prote 94.5 0.19 4E-06 65.9 11.3 99 159-275 597-700 (703)
64 TIGR02938 nifL_nitrog nitrogen 94.4 0.25 5.4E-06 59.4 11.5 90 160-267 388-483 (494)
65 PRK11360 sensory histidine kin 94.3 0.14 3E-06 63.1 9.0 50 159-211 500-552 (607)
66 PRK10815 sensor protein PhoQ; 94.2 0.17 3.7E-06 63.2 9.8 95 159-278 378-477 (485)
67 PRK11073 glnL nitrogen regulat 94.2 0.16 3.5E-06 59.2 9.1 94 159-277 237-345 (348)
68 PRK09835 sensor kinase CusS; P 94.2 0.25 5.5E-06 60.1 10.9 89 159-266 375-469 (482)
69 PRK11086 sensory histidine kin 94.2 0.26 5.7E-06 60.8 11.1 97 159-278 433-534 (542)
70 PF13581 HATPase_c_2: Histidin 94.0 0.25 5.5E-06 49.9 8.9 82 158-262 30-113 (125)
71 PRK04069 serine-protein kinase 94.0 0.26 5.7E-06 53.0 9.4 53 158-210 41-95 (161)
72 TIGR02956 TMAO_torS TMAO reduc 94.0 0.2 4.3E-06 66.9 10.3 88 158-267 578-672 (968)
73 PRK11644 sensory histidine kin 93.9 0.15 3.2E-06 64.1 8.5 45 159-207 410-456 (495)
74 COG4585 Signal transduction hi 93.8 0.2 4.3E-06 60.1 8.9 81 158-275 278-361 (365)
75 PRK03660 anti-sigma F factor; 93.7 0.47 1E-05 49.2 10.4 49 158-206 38-88 (146)
76 PRK11466 hybrid sensory histid 93.7 0.3 6.4E-06 65.0 11.0 96 159-278 561-661 (914)
77 COG4191 Signal transduction hi 93.5 0.29 6.2E-06 62.1 9.7 57 154-211 492-550 (603)
78 PRK13837 two-component VirA-li 93.4 0.37 8E-06 64.1 11.3 95 159-278 560-674 (828)
79 PRK10490 sensor protein KdpD; 93.3 0.4 8.8E-06 64.5 11.4 99 159-278 778-881 (895)
80 PRK10618 phosphotransfer inter 93.3 0.4 8.7E-06 64.5 11.3 99 159-278 565-671 (894)
81 PRK11107 hybrid sensory histid 92.7 0.43 9.3E-06 63.2 10.3 89 159-267 408-507 (919)
82 KOG1845 MORC family ATPases [C 92.3 0.13 2.8E-06 67.1 4.5 92 156-266 143-246 (775)
83 TIGR01924 rsbW_low_gc serine-p 92.3 0.99 2.2E-05 48.7 10.6 88 159-264 42-131 (159)
84 PRK11091 aerobic respiration c 92.0 0.65 1.4E-05 60.9 10.6 100 159-278 398-504 (779)
85 PRK10841 hybrid sensory kinase 92.0 0.74 1.6E-05 62.2 11.2 99 159-278 562-666 (924)
86 PRK10600 nitrate/nitrite senso 91.3 0.51 1.1E-05 59.8 8.2 44 160-207 470-515 (569)
87 PRK10547 chemotaxis protein Ch 90.9 1.3 2.8E-05 58.0 11.4 104 163-266 389-511 (670)
88 PRK13560 hypothetical protein; 90.8 0.68 1.5E-05 59.9 8.9 48 160-207 712-762 (807)
89 smart00634 BID_1 Bacterial Ig- 90.3 1.1 2.4E-05 44.0 7.8 63 1019-1083 3-66 (92)
90 PRK09959 hybrid sensory histid 90.3 1.1 2.4E-05 61.6 10.6 98 159-278 828-935 (1197)
91 TIGR02168 SMC_prok_B chromosom 89.9 3.5 7.6E-05 56.2 14.7 30 1351-1386 502-531 (1179)
92 COG2205 KdpD Osmosensitive K+ 89.4 1.9 4.1E-05 56.8 10.8 50 159-211 775-826 (890)
93 PRK13557 histidine kinase; Pro 89.4 2 4.3E-05 52.9 10.8 97 159-278 277-393 (540)
94 COG2972 Predicted signal trans 88.4 1.4 3E-05 55.1 8.6 53 159-211 350-405 (456)
95 COG0643 CheA Chemotaxis protei 87.9 2.3 5.1E-05 56.1 10.5 119 161-279 434-575 (716)
96 KOG0787 Dehydrogenase kinase [ 87.0 1.8 3.8E-05 52.8 7.8 100 159-267 260-369 (414)
97 COG2172 RsbW Anti-sigma regula 86.9 5.4 0.00012 43.0 10.8 90 158-269 39-131 (146)
98 PRK13559 hypothetical protein; 84.1 2 4.3E-05 50.8 6.6 48 160-207 268-319 (361)
99 KOG1845 MORC family ATPases [C 83.2 0.73 1.6E-05 60.5 2.7 56 195-270 2-57 (775)
100 COG3920 Signal transduction hi 83.1 1.7 3.7E-05 49.6 5.3 49 159-207 122-174 (221)
101 PRK04863 mukB cell division pr 82.8 2.6 5.7E-05 59.6 7.8 47 1349-1399 681-728 (1486)
102 PF02369 Big_1: Bacterial Ig-l 78.5 6 0.00013 39.8 6.7 65 1028-1094 17-89 (100)
103 COG3850 NarQ Signal transducti 77.1 5.8 0.00013 50.4 7.4 78 159-271 481-561 (574)
104 COG4564 Signal transduction hi 76.9 7.2 0.00016 47.0 7.7 91 160-278 356-448 (459)
105 PRK10935 nitrate/nitrite senso 74.8 3.9 8.3E-05 51.4 5.2 44 160-207 472-518 (565)
106 KOG0979 Structural maintenance 73.0 48 0.001 45.2 14.2 45 1349-1393 446-490 (1072)
107 COG3851 UhpB Signal transducti 70.1 10 0.00022 46.4 6.8 45 159-207 410-456 (497)
108 COG3852 NtrB Signal transducti 52.7 17 0.00038 43.8 4.6 97 159-278 241-353 (363)
109 COG5000 NtrY Signal transducti 51.7 24 0.00052 45.8 5.9 52 160-211 601-658 (712)
110 COG5002 VicK Signal transducti 51.7 35 0.00075 42.0 6.9 102 159-280 342-449 (459)
111 KOG0355 DNA topoisomerase type 47.5 17 0.00038 48.3 3.9 71 139-210 33-103 (842)
112 TIGR03769 P_ac_wall_RPT actino 46.5 12 0.00026 32.5 1.6 17 865-881 6-23 (41)
113 COG4251 Bacteriophytochrome (l 45.1 57 0.0012 42.8 7.6 50 160-211 637-688 (750)
114 cd04715 BAH_Orc1p_like BAH, or 44.6 49 0.0011 36.5 6.2 105 631-744 11-123 (159)
115 PF06470 SMC_hinge: SMC protei 39.9 1.4E+02 0.003 30.1 8.3 88 1303-1395 26-119 (120)
116 KOG0996 Structural maintenance 39.7 91 0.002 43.4 8.6 41 1357-1402 696-736 (1293)
117 PF02196 RBD: Raf-like Ras-bin 39.5 55 0.0012 31.4 5.0 52 41-95 3-56 (71)
118 PF07106 TBPIP: Tat binding pr 39.1 52 0.0011 36.1 5.4 59 1264-1322 80-151 (169)
119 COG4192 Signal transduction hi 38.9 45 0.00097 42.2 5.3 61 149-211 554-617 (673)
120 cd04713 BAH_plant_3 BAH, or Br 38.4 80 0.0017 34.2 6.6 96 638-739 9-104 (146)
121 PF14501 HATPase_c_5: GHKL dom 35.3 54 0.0012 32.4 4.5 37 158-194 4-40 (100)
122 COG4932 Predicted outer membra 32.0 9.5E+02 0.021 34.7 15.8 121 1030-1164 1259-1385(1531)
123 COG3275 LytS Putative regulato 30.7 53 0.0011 41.9 4.2 49 160-208 457-508 (557)
124 smart00455 RBD Raf-like Ras-bi 30.3 75 0.0016 30.5 4.3 52 41-95 2-55 (70)
125 KOG4603 TBP-1 interacting prot 29.7 1.3E+02 0.0027 33.9 6.3 52 1270-1327 79-130 (201)
126 cd01818 TIAM1_RBD Ubiquitin do 25.2 93 0.002 30.8 3.9 28 41-71 2-29 (77)
127 PF04728 LPP: Lipoprotein leuc 25.0 97 0.0021 29.0 3.8 50 1278-1331 4-53 (56)
128 COG4932 Predicted outer membra 23.7 2.9E+02 0.0063 39.2 9.2 112 1031-1164 1074-1199(1531)
129 PF06717 DUF1202: Protein of u 23.6 2.4E+02 0.0053 34.0 7.6 63 1260-1322 135-197 (308)
130 PF04977 DivIC: Septum formati 21.9 1.6E+02 0.0034 27.8 4.8 51 1265-1323 12-62 (80)
131 PF07028 DUF1319: Protein of u 21.4 2.5E+02 0.0055 30.2 6.5 59 1266-1324 42-100 (126)
132 PF07106 TBPIP: Tat binding pr 20.9 1.9E+02 0.0041 31.7 5.9 50 1270-1325 72-121 (169)
133 COG1196 Smc Chromosome segrega 20.3 4.7E+02 0.01 37.3 10.7 42 1350-1396 588-629 (1163)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.78 E-value=6.3e-19 Score=233.90 Aligned_cols=140 Identities=26% Similarity=0.403 Sum_probs=119.6
Q ss_pred CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000366 1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1429 (1612)
Q Consensus 1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1429 (1612)
++||+|.|++|++|+ ++|..||+.++|++ ++.||+.|...|+.+..|+++ ...||+||||
T Consensus 514 ~~Gv~G~v~~li~v~-~~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~lk~------------------~~~gr~tflp 573 (1163)
T COG1196 514 LPGVYGPVAELIKVK-EKYETALEAALGNR-LQAVVVENEEVAKKAIEFLKE------------------NKAGRATFLP 573 (1163)
T ss_pred CCCccchHHHhcCcC-hHHHHHHHHHcccc-cCCeeeCChHHHHHHHHHHhh------------------cCCCccccCc
Confidence 899999999999997 49999999999984 999999999999999999944 4599999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366 1430 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus 1430 Ld~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
|+.|+++... +.. . .+||+|||+|+|+||++|. .+|+++||+|.|++
T Consensus 574 l~~i~~~~~~--------------~~~--~--~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv~--- 620 (1163)
T COG1196 574 LDRIKPLRSL--------------KSD--A--APGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVVD--- 620 (1163)
T ss_pred hhhhcccccc--------------ccc--c--ccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEec---
Confidence 9999985432 111 1 5899999999999999996 79999999999975
Q ss_pred hHHHHHhhccC-----ceEEecCCeeeccceEEeccCC
Q 000366 1510 DMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGN 1542 (1612)
Q Consensus 1510 ~m~~A~~~i~~-----~~VTLDG~lie~sG~~tgG~~~ 1542 (1612)
+++.|+.++.. .+|||||++++++|+||||++.
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~ 658 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN 658 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc
Confidence 56667766433 3999999999999999999554
No 2
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.71 E-value=9.3e-18 Score=172.96 Aligned_cols=132 Identities=32% Similarity=0.430 Sum_probs=81.9
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEec---CCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d---~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk 234 (1612)
|+++.||+||||||+|| .+++|.|.|+.+ ...|+|.|||.||+.++|.. |+.+|.+.++...
T Consensus 1 y~~~~al~ElI~Ns~DA-----~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~---~~~~g~s~k~~~~------- 65 (137)
T PF13589_consen 1 YSPEDALRELIDNSIDA-----GATNIKISIDEDKKGERYIVIEDNGEGMSREDLES---FFRIGRSSKKSEK------- 65 (137)
T ss_dssp -SCTHHHHHHHHHHHHH-----HHHHEEEEEEEETTTTTEEEEEESSS---HHHHHH---HTTCHHTHHHHHH-------
T ss_pred CcHHHHHHHHHHHHHHc-----cCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH---hccccCCCCCchh-------
Confidence 67799999999999999 477788888875 47899999999999999986 6666666443211
Q ss_pred CCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhccccccceeecCCCCCC--CcccccCCCCC
Q 000366 235 PPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFP--SKDEIADSPHG 312 (1612)
Q Consensus 235 ~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~s~~~~ewel~~~ir~p--s~eEi~~s~hG 312 (1612)
....+|+||+|+|+|+|++|+.++|+|++.+....+.++.++ +. ....|.++.....+ ...++...+||
T Consensus 66 ---~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~~--~~----~~~~~~i~~~~~~~~~~~~~~~~~~~G 136 (137)
T PF13589_consen 66 ---DRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYDW--IE----KDESWDIPERESEEIQNESELDKSEHG 136 (137)
T ss_dssp ---HGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEEE--ET----T--------------------------
T ss_pred ---hhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEec--cc----ccccccccccccccccccccccccccC
Confidence 134699999999999999999999999999887766665553 21 22345554332221 12344556788
Q ss_pred C
Q 000366 313 S 313 (1612)
Q Consensus 313 T 313 (1612)
|
T Consensus 137 t 137 (137)
T PF13589_consen 137 T 137 (137)
T ss_dssp -
T ss_pred C
Confidence 7
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.71 E-value=2e-16 Score=208.80 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=116.5
Q ss_pred CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000366 1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1429 (1612)
Q Consensus 1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1429 (1612)
.+||+|+|+.|+.|+ +.|..|++.+||+ .+..|||+|.+.|+.+.+|+++. +.||+||+|
T Consensus 520 ~~g~~g~l~dli~v~-~~y~~Aie~~lg~-~l~~ivv~~~~~a~~~i~~l~~~------------------~~gr~tflp 579 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVG-ERYATAIEVAAGN-RLNNVVVEDDAVAKEAIELLKRR------------------KAGRATFLP 579 (1164)
T ss_pred CCCceecHHHhcCcC-HHHHHHHHHHhhh-hhCCEEECCHHHHHHHHHHHHhc------------------CCCCeeecc
Confidence 579999999999996 8999999999998 49999999999999999999444 489999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366 1430 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus 1430 Ld~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
||.|++... + ..++. ++|++++|+++|+|++.|. .++.++||++.|++
T Consensus 580 l~~~~~~~~-------------~-~~~~~---~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~~--- 627 (1164)
T TIGR02169 580 LNKMRDERR-------------D-LSILS---EDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVVE--- 627 (1164)
T ss_pred HhhcCCCCC-------------C-ccccc---CCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEEc---
Confidence 999975211 0 11222 4789999999999999986 69999999999975
Q ss_pred hHHHHHhhccC-ceEEecCCeeeccceEEeccC
Q 000366 1510 DMIEAHTCIRH-GAVSLDGGILKEDGIISLGCG 1541 (1612)
Q Consensus 1510 ~m~~A~~~i~~-~~VTLDG~lie~sG~~tgG~~ 1541 (1612)
++..|..+.+. .+|||||++++++|+||||+.
T Consensus 628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~ 660 (1164)
T TIGR02169 628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSR 660 (1164)
T ss_pred CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCC
Confidence 56667766543 389999999999999999963
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-17 Score=201.17 Aligned_cols=226 Identities=16% Similarity=0.229 Sum_probs=154.0
Q ss_pred cccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhccc-------CC----C--ceEEEEEEEecCCeEEEEECCCCCC
Q 000366 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------NA----K--NERRLISVNIAEDKISVFDTGPGMD 205 (1612)
Q Consensus 142 ~dL~Pd~~-~L~~lg~-~Y-sl~sALAELVDNSIDA~~~-------Na----~--A~~I~I~I~~d~~sItV~DNG~GMs 205 (1612)
..+.-++. +|..+.. -| +-+-.|+|||.||-||.-. +. + ..+|.|.++-++.+++|.|||+|||
T Consensus 7 ~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT 86 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMT 86 (623)
T ss_pred hhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCC
Confidence 34455555 4433333 46 5788899999999999522 11 1 2344444444578999999999999
Q ss_pred hHhHhhhhhcccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhc
Q 000366 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRC 285 (1612)
Q Consensus 206 ~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~ 285 (1612)
++|+.+ +.||++.|..+... ..+++.. .+...||+||||++ +||+++++|+|.||..|+...+.|.-+
T Consensus 87 ~~Ev~~--~LgTIAkSgT~~F~-~~l~~~~-~~~~lIGQFGVGFY-SaFmVAdkV~V~T~~~~~~~~~~W~S~------- 154 (623)
T COG0326 87 KDEVIE--NLGTIAKSGTKEFL-ESLSEDQ-KDSDLIGQFGVGFY-SAFMVADKVTVITRSAGEDEAYHWESD------- 154 (623)
T ss_pred HHHHHH--HHHHhhhccHHHHH-HHhcccc-ccccccccccchhh-heeeeeeeEEEEeccCCCCcceEEEEc-------
Confidence 999987 78999887554322 1112222 45678999999998 599999999999999998877777333
Q ss_pred cccccceeecCCCCCCCcccccCCC-CCCeeEEEEeCCC-----CCCcChHHHHHHHHhhhcCcccCCccc-CCCccc--
Q 000366 286 SDAELTWRTNGGIRFPSKDEIADSP-HGSFTKVEIWEPK-----LKSLDVKPLGCKLKDIYFPYIQCDEIS-STGKTT-- 356 (1612)
Q Consensus 286 s~~~~ewel~~~ir~ps~eEi~~s~-hGTFT~VVI~eL~-----~~~~~ie~Lrr~Ls~IYhpyL~~d~~~-~~gkpi-- 356 (1612)
++.+|.+ +++.+.+ +|| +|++.-.. ...|.+.++.+.++....++|++.... .+++..
T Consensus 155 --g~g~ytv---------~~~~~~~~~GT--~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~ 221 (623)
T COG0326 155 --GEGEYTV---------EDIDKEPRRGT--EITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEW 221 (623)
T ss_pred --CCCceEE---------eeccCCCCCCc--EEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccccchhH
Confidence 4444544 3333334 599 88877652 347888888888888888888854321 111100
Q ss_pred c-----CeEEEecCcccccccCCeeEEeccccCCCCCceeE
Q 000366 357 R-----PIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQ 392 (1612)
Q Consensus 357 d-----pief~VNg~~L~dIe~~E~~~~~~hs~~gp~f~l~ 392 (1612)
. +.-++-|-.++++.+|.+||++..|.|++|..+++
T Consensus 222 e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h 262 (623)
T COG0326 222 ETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIH 262 (623)
T ss_pred HHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEe
Confidence 0 00123344788999999999999999999966664
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.6e-16 Score=197.92 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=114.3
Q ss_pred CCCCCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceE
Q 000366 1347 SNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYL 1426 (1612)
Q Consensus 1347 s~~~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~t 1426 (1612)
+..++|++|-.+.||.|+ +.|-.|||+ ++. .++.||++|++.|+.++.|+++++ .||+|
T Consensus 612 sG~i~Gf~GRLGDLg~Id-~kYDvAIsT-ac~-~LdyiVVdt~e~aq~cI~fl~~~n------------------LgraT 670 (1293)
T KOG0996|consen 612 SGRIPGFYGRLGDLGAID-EKYDVAIST-ACA-RLDYIVVDTIETAQECINFLKKNN------------------LGRAT 670 (1293)
T ss_pred cCCCCccccccccccccc-hHHHHHHHH-hcc-ccceEEeccHHHHHHHHHHHHHcC------------------CCcee
Confidence 456899999999999995 899999999 444 499999999999999999995555 99999
Q ss_pred EEecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeeccccc-ccccccccccCCCchhhHHHHhhccceee
Q 000366 1427 VICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVY 1505 (1612)
Q Consensus 1427 fLpLd~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d-~~~~~~~t~~g~gLRetlf~~lFg~t~Vy 1505 (1612)
|++||+|+....++. | +.. |=.+=+-.+||.|. +++. ++||+++++|+|-
T Consensus 671 Fi~LDki~~~~~~l~----------~-i~t------penvPRLfDLv~~~d~~~r------------~aFYfaLrdtLV~ 721 (1293)
T KOG0996|consen 671 FIILDKIKDHQKKLA----------P-ITT------PENVPRLFDLVKCKDEKFR------------PAFYFALRDTLVA 721 (1293)
T ss_pred EEehHhhhhhhhccC----------C-CCC------CCCcchHhhhhccCCHHHH------------HHHHHHHhhhhhh
Confidence 999999986555432 1 111 11223556799999 7776 7999999999995
Q ss_pred ccHHhHHHHHhhccC----c-eEEecCCeeeccceEEeccCC
Q 000366 1506 KTRKDMIEAHTCIRH----G-AVSLDGGILKEDGIISLGCGN 1542 (1612)
Q Consensus 1506 ~T~~~m~~A~~~i~~----~-~VTLDG~lie~sG~~tgG~~~ 1542 (1612)
+++++|.+..-+ + .|||||.||+.||.||||-..
T Consensus 722 ---d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~ 760 (1293)
T KOG0996|consen 722 ---DNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKK 760 (1293)
T ss_pred ---cCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCc
Confidence 677878877421 2 899999999999999977544
No 6
>PTZ00130 heat shock protein 90; Provisional
Probab=99.65 E-value=2.6e-16 Score=198.01 Aligned_cols=251 Identities=16% Similarity=0.180 Sum_probs=164.4
Q ss_pred CCccEEEEEecCCcccccccccccccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhccc-------C----CCceEE
Q 000366 119 PSKCHILKLYDGSGEIAKTFENMWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------N----AKNERR 184 (1612)
Q Consensus 119 ~~~~~i~~l~~~~~~~~~~~~~~~dL~Pd~~-~L~~lg~-~Y-sl~sALAELVDNSIDA~~~-------N----a~A~~I 184 (1612)
.+-++|--+.+|+. ++.....+.+.-+++ +|.-+.. -| +...+|+|||.||.||... + .+...+
T Consensus 47 ~~~~~~~~~~~~~~--~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~ 124 (814)
T PTZ00130 47 KDRDNIPEIEDGEK--PTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKL 124 (814)
T ss_pred cccccCcccccCCC--CCcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCc
Confidence 34445655666666 455555677888888 4444433 45 5889999999999999631 1 011234
Q ss_pred EEEEEe--cCCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEE
Q 000366 185 LISVNI--AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALV 262 (1612)
Q Consensus 185 ~I~I~~--d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV 262 (1612)
.|+|.. ++.+|+|.|||+|||.+|+.+ +||+++.|..+.... .+++ .......||+||||++ ++|+++++|+|
T Consensus 125 ~I~I~~D~~~~tLtI~DnGIGMT~eEl~~--nLgTIA~Sgt~~F~~-~l~~-~~~~~~lIGQFGVGFY-SaFmVAdkV~V 199 (814)
T PTZ00130 125 EIRISANKEKNILSITDTGIGMTKEDLIN--NLGTIAKSGTSNFLE-AISK-SGGDMSLIGQFGVGFY-SAFLVADKVIV 199 (814)
T ss_pred eEEEEECCCCCEEEEEECCCCCCHHHHHH--HhhhhcccccHHHHH-Hhhc-cCCCcccccccccchh-heeeecCEEEE
Confidence 555555 478999999999999999976 899998874432210 1111 0113568999999987 69999999999
Q ss_pred EEeeCCCceEEEEEEehhHHhhccccccceeecCCCCCCCcccccCCCCCCeeEEEEeCC-----CCCCcChHHHHHHHH
Q 000366 263 SSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEP-----KLKSLDVKPLGCKLK 337 (1612)
Q Consensus 263 ~SK~~gs~~v~~l~LD~~~Le~~s~~~~ewel~~~ir~ps~eEi~~s~hGTFT~VVI~eL-----~~~~~~ie~Lrr~Ls 337 (1612)
.||..+.. .+.|.-+ ++..|.+....+ ....++|| +|++.-. ....+.+..|.++++
T Consensus 200 ~Trs~~~~-~~~W~s~---------g~g~y~I~e~~~------~~~~~rGT--~I~LhLked~~efl~~~~ik~likkYS 261 (814)
T PTZ00130 200 YTKNNNDE-QYIWEST---------ADAKFTIYKDPR------GSTLKRGT--RISLHLKEDATNLMNDKKLVDLISKYS 261 (814)
T ss_pred EEcCCCCc-eEEEEEC---------CCCcEEEEECCC------CCCCCCCc--EEEEEECCchhhhccHHHHHHHHHHhh
Confidence 99987744 5666322 445565533211 11124899 8887654 234678888888888
Q ss_pred hhhcCcccCCcccC---------------CCc---c-----------ccCe-----EE-EecC---------cccccccC
Q 000366 338 DIYFPYIQCDEISS---------------TGK---T-----------TRPI-----EF-QVNG---------IDLAEVAG 373 (1612)
Q Consensus 338 ~IYhpyL~~d~~~~---------------~gk---p-----------idpi-----ef-~VNg---------~~L~dIe~ 373 (1612)
....++|.+..... .++ + .+.+ +. +||. .++++.+|
T Consensus 262 ~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY 341 (814)
T PTZ00130 262 QFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVKVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDY 341 (814)
T ss_pred ccCCCCEEEccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHH
Confidence 88887776421100 000 0 0000 11 4553 58899999
Q ss_pred CeeEEeccccCCCCCceeEee
Q 000366 374 GEVAITNMHSCNGPDFILQLH 394 (1612)
Q Consensus 374 ~E~~~~~~hs~~gp~f~l~l~ 394 (1612)
.+||+...|.++.|..+++++
T Consensus 342 ~eFYk~l~~~~~dPl~~iH~~ 362 (814)
T PTZ00130 342 KKFFSVLSGFNDEPLYHIHFF 362 (814)
T ss_pred HHHHHHhcCCccCCceeeeec
Confidence 999999999999998888543
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=99.63 E-value=5e-15 Score=185.34 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=133.3
Q ss_pred cccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhccc-------------CCCceEEEEEEEecCCeEEEEECCCCCC
Q 000366 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPGMD 205 (1612)
Q Consensus 142 ~dL~Pd~~-~L~~lg~-~Y-sl~sALAELVDNSIDA~~~-------------Na~A~~I~I~I~~d~~sItV~DNG~GMs 205 (1612)
+.+.-++. +|..++. -| +...+|+|||+||+||... +....+|.|.++-++..|+|.|||+||+
T Consensus 6 ~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt 85 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMT 85 (613)
T ss_pred eehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCC
Confidence 44455555 4444554 35 6899999999999999531 1122345555555567899999999999
Q ss_pred hHhHhhhhhcccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCC-CceEEEEEEehhHHhh
Q 000366 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKV-SKEVYTLHLEKEALMR 284 (1612)
Q Consensus 206 ~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~g-s~~v~~l~LD~~~Le~ 284 (1612)
.+|+.. .||+++.|..+... ..+.+........+|+||+|+. ++|++|++++|.||+.+ +...+.|..+.
T Consensus 86 ~eel~~--~l~~ia~Sg~~~f~-~k~~~~~~~~~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~~~~~~~~w~~~g----- 156 (613)
T PRK05218 86 REEVIE--NLGTIAKSGTKEFL-EKLKGDQKKDSQLIGQFGVGFY-SAFMVADKVTVITRSAGPAAEAVRWESDG----- 156 (613)
T ss_pred HHHHHH--HHHhhccccchhHH-HHhhcccccccccccccCcCch-hhhhccCEEEEEEcCCCCCCceEEEEEeC-----
Confidence 999986 68877766322110 0111111123578999999996 69999999999999987 56677775542
Q ss_pred ccccccceeecCCCCCCCcccccCCCCCCeeEEEEeCCC-----CCCcChHHHHHHHHhhhcCcccCCcccCCCc---cc
Q 000366 285 CSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPK-----LKSLDVKPLGCKLKDIYFPYIQCDEISSTGK---TT 356 (1612)
Q Consensus 285 ~s~~~~ewel~~~ir~ps~eEi~~s~hGTFT~VVI~eL~-----~~~~~ie~Lrr~Ls~IYhpyL~~d~~~~~gk---pi 356 (1612)
...+.+ ++....++|| +|++.-.. .+.+.+.++.++++....+.|.. +++ .+
T Consensus 157 ----~~~~~i---------~~~~~~~~GT--~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~-----~~~~~~~i 216 (613)
T PRK05218 157 ----EGEYTI---------EEIEKEERGT--EITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL-----EKEEEETI 216 (613)
T ss_pred ----CceeEE---------eECCCCCCCc--EEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE-----ecccceee
Confidence 112222 1111124898 77775431 12345666666666444443443 111 00
Q ss_pred c--CeEEEecCcccccccCCeeEEeccccCCCCCcee
Q 000366 357 R--PIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFIL 391 (1612)
Q Consensus 357 d--pief~VNg~~L~dIe~~E~~~~~~hs~~gp~f~l 391 (1612)
. ..-++-++.++++.++.+||+...+.+..|..++
T Consensus 217 n~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i 253 (613)
T PRK05218 217 NSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWI 253 (613)
T ss_pred cCCccceecCCccccHHHHHHHhhhhcccccCCcEEE
Confidence 0 0011333457777777777777666666665555
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=99.60 E-value=3.1e-15 Score=186.16 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=132.6
Q ss_pred cCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhcccCCC-----ceEEEEEE-EecCCeEEEEECCCCCChHhHhhhhh
Q 000366 144 LTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTNAK-----NERRLISV-NIAEDKISVFDTGPGMDSTDENSIVK 214 (1612)
Q Consensus 144 L~Pd~~-~L~~lg~-~Y-sl~sALAELVDNSIDA~~~Na~-----A~~I~I~I-~~d~~sItV~DNG~GMs~dEL~~~~k 214 (1612)
+.-++. +|..+++ -| +...+|+|||.||+||...... ..+|.|.+ +-++.+|+|.|||+||+.+++.+ .
T Consensus 5 Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~--~ 82 (601)
T PRK14083 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE--F 82 (601)
T ss_pred chHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH--H
Confidence 344445 5565665 34 6899999999999999633100 12566666 44578899999999999999986 7
Q ss_pred cccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhccccccceee
Q 000366 215 WGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRT 294 (1612)
Q Consensus 215 wGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~s~~~~ewel 294 (1612)
||++|.|.++... .+. .....+|+||+|++ |+|++|++++|.||..+....+.|.-+ ++..|.+
T Consensus 83 l~~ig~S~k~~~~---~~~---~~~~~IG~FGIGf~-S~F~vad~v~V~Tr~~~~~~~~~W~~~---------~~g~y~i 146 (601)
T PRK14083 83 LATIGRSSKRDEN---LGF---ARNDFLGQFGIGLL-SCFLVADEIVVVSRSAKDGPAVEWRGK---------ADGTYSV 146 (601)
T ss_pred Hhhhccchhhhhh---hcc---cccccccccccceE-EEEEecCEEEEEeccCCCCceEEEEEC---------CCCceEE
Confidence 9999988655321 111 12568999999986 799999999999999765556666432 2333433
Q ss_pred cCCCCCCCcccccCCCCCCeeEEEEeCCC-----CCCcChHHHHHHHHhhhcCcccCCcccCCCccccCeEEEecC----
Q 000366 295 NGGIRFPSKDEIADSPHGSFTKVEIWEPK-----LKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNG---- 365 (1612)
Q Consensus 295 ~~~ir~ps~eEi~~s~hGTFT~VVI~eL~-----~~~~~ie~Lrr~Ls~IYhpyL~~d~~~~~gkpidpief~VNg---- 365 (1612)
... + .....+|| +|++.... .+.+.+.+|.++++....+.|.. +|+. -+||.
T Consensus 147 ~~~---~----~~~~~~GT--~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l-----~~~~-----~~iN~~~~l 207 (601)
T PRK14083 147 RKL---E----TERAEPGT--TVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV-----EGEK-----GGVNETPPP 207 (601)
T ss_pred EeC---C----CCCCCCCC--EEEEEecCchhhhccHHHHHHHHHHHhccCCCCccc-----CCce-----eeecCCCCC
Confidence 211 0 01224898 88887532 12344555555555544444443 2211 12332
Q ss_pred -----cccc--cccCCeeEEeccccCCCCCceeE
Q 000366 366 -----IDLA--EVAGGEVAITNMHSCNGPDFILQ 392 (1612)
Q Consensus 366 -----~~L~--dIe~~E~~~~~~hs~~gp~f~l~ 392 (1612)
.+++ +.+|.+||+...+ +.|.++++
T Consensus 208 W~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih 239 (601)
T PRK14083 208 WTRDYPDPETRREALLAYGEELLG--FTPLDVIP 239 (601)
T ss_pred ccCCccccCccHHHHHHHHHHhcC--CCchheee
Confidence 3444 7778888877665 56766664
No 9
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.9e-15 Score=182.37 Aligned_cols=279 Identities=19% Similarity=0.273 Sum_probs=172.4
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH--------------HHHHHHhccccccc-CCHHHHHHHHHHh----
Q 000366 1265 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEE--------------VLSKLQVSVEPYSL-LTKEEIIRRIKSI---- 1325 (1612)
Q Consensus 1265 ~~k~q~~l~~lg~~i~~~e~~l~~L~~~k~~~~~--------------~i~~l~~~l~~~~~-~~~E~~~k~i~~~---- 1325 (1612)
....+..+.....++.+++++|+..+.++....+ .++.|...|..+.. -+.++..+|=..+
T Consensus 408 ~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~ 487 (1174)
T KOG0933|consen 408 LSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHED 487 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 5567777888888888888888887776443333 33333333333211 1333333333111
Q ss_pred ----hcccccccccccccccc--CCCCCC-CCCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHh
Q 000366 1326 ----YQSAASVICCSTKEFLC--SKPRSN-FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKY 1398 (1612)
Q Consensus 1326 ----~~saa~i~~~l~~r~~~--~~~~s~-~~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Y 1398 (1612)
.+.--.....+.. -.. --|.++ .-..|.|+||+|++|.|..|+.||...+||+ +-.||+.|.+.++.|.
T Consensus 488 ~~~lk~~~~~l~a~~~~-~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgr-LynvVv~te~tgkqLL-- 563 (1174)
T KOG0933|consen 488 IGRLKDELDRLLARLAN-YEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGR-LYNVVVDTEDTGKQLL-- 563 (1174)
T ss_pred HHHHHHHHHHHHhhhcc-cccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCc-ceeEEeechHHHHHHh--
Confidence 1111111111111 110 012332 5678999999999999999999999999996 6666666888888773
Q ss_pred hhcCCccccchhhhhhhhcCcccCCceEEEecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeeccccccc
Q 000366 1399 EQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDH 1478 (1612)
Q Consensus 1399 l~e~~i~~~~~~~~~~~s~~~~~~GR~tfLpLd~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~ 1478 (1612)
+-|. ...|.|.||||+|+.+.-. |+.. +... ...++.+-.|++||.||+.
T Consensus 564 -q~g~-----------------l~rRvTiIPLnKI~s~~~s-----~~v~-----~~ak--~v~~~~v~~al~Li~yd~~ 613 (1174)
T KOG0933|consen 564 -QRGN-----------------LRRRVTIIPLNKIQSFVLS-----PNVL-----QAAK--NVGNDNVELALSLIGYDDE 613 (1174)
T ss_pred -hccc-----------------ccceeEEEechhhhhccCC-----HhHH-----HHHH--HhcCchHHHHHHHhcCCHH
Confidence 2222 3468999999999876432 2220 0000 1246788899999999998
Q ss_pred ccccccccCCCchhhHHHHhhccceeeccHHhHHHHHhh-----ccCceEEecCCeeeccceEEeccCCCceeecccccc
Q 000366 1479 HMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTC-----IRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTR 1553 (1612)
Q Consensus 1479 ~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~~m~~A~~~-----i~~~~VTLDG~lie~sG~~tgG~~~~~~~F~~~~~~ 1553 (1612)
+. .+..|+||+|.|++ +++.|+.. |.-..|||+|+..+++|.+|||++.++-. .+.
T Consensus 614 l~------------~amefvFG~tlVc~---~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~----~L~ 674 (1174)
T KOG0933|consen 614 LK------------KAMEFVFGSTLVCD---SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGAD----LLR 674 (1174)
T ss_pred HH------------HHHHHHhCceEEec---CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCccc----HHH
Confidence 86 69999999999985 55557754 33337999999999999999999875422 111
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000366 1554 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKF 1600 (1612)
Q Consensus 1554 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1600 (1612)
-+-..-+++.||+....+ .+++++|++.|+....||..=++++
T Consensus 675 ~l~~l~~~~~~~~~~q~e----l~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKE----LEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122344444444333 3445556666666666665555544
No 10
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.54 E-value=2.3e-14 Score=180.28 Aligned_cols=180 Identities=22% Similarity=0.247 Sum_probs=117.2
Q ss_pred cccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhccc-------CC----CceEEEEEEEe--cCCeEEEEECCCCCC
Q 000366 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------NA----KNERRLISVNI--AEDKISVFDTGPGMD 205 (1612)
Q Consensus 142 ~dL~Pd~~-~L~~lg~-~Y-sl~sALAELVDNSIDA~~~-------Na----~A~~I~I~I~~--d~~sItV~DNG~GMs 205 (1612)
+.+.-++. +|.-+.. -| +....|+|||.||.||... +. ....+.|+|.. ++.+|+|.|||+||+
T Consensus 5 ~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt 84 (701)
T PTZ00272 5 FAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMT 84 (701)
T ss_pred EecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCC
Confidence 34445555 3333333 35 4688899999999999522 10 12335566655 467899999999999
Q ss_pred hHhHhhhhhcccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhc
Q 000366 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRC 285 (1612)
Q Consensus 206 ~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~ 285 (1612)
.+||.+ +||+++.|..+.... .... ......||+||||++ ++|++|.+++|.||..+. ..+.|..+
T Consensus 85 ~edl~~--~LgtIa~SGt~~f~~-~~~~--~~~~~~iGqFGvGfy-S~Fmvad~V~V~Srs~~~-~~~~W~s~------- 150 (701)
T PTZ00272 85 KADLVN--NLGTIARSGTKAFME-ALEA--GGDMSMIGQFGVGFY-SAYLVADRVTVTSKNNSD-ESYVWESS------- 150 (701)
T ss_pred HHHHHH--HhhhhhhcchHHHHH-Hhhc--cCCccccCCCCcceE-EEEEeccEEEEEEecCCC-ceEEEEEC-------
Confidence 999976 899998774332110 0001 112568999999987 699999999999998664 47777544
Q ss_pred cccccceeecCCCCCCCcccccCCCCCCeeEEEEeCCC-----CCCcChHHHHHHHHhhhcCcccC
Q 000366 286 SDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPK-----LKSLDVKPLGCKLKDIYFPYIQC 346 (1612)
Q Consensus 286 s~~~~ewel~~~ir~ps~eEi~~s~hGTFT~VVI~eL~-----~~~~~ie~Lrr~Ls~IYhpyL~~ 346 (1612)
.+..|.+.... . ....+|| +|++.-.. ...+.+..|.++++....++|..
T Consensus 151 --~~g~y~i~~~~-----~--~~~~~GT--~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 151 --AGGTFTITSTP-----E--SDMKRGT--RITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred --CCCcEEEEeCC-----C--CCCCCCC--EEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 23344442110 0 1124798 77776642 34677888888888777777764
No 11
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.8e-13 Score=172.03 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=121.1
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000366 1349 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1428 (1612)
Q Consensus 1349 ~~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfL 1428 (1612)
.-|||+|.|.+|+.-.-..|.-|++.+||. .|++|||.|...|+.|+.|+|+-+ .|-+|||
T Consensus 500 ~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~ylKeqr------------------~~~~TFl 560 (1141)
T KOG0018|consen 500 LFPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYLKEQR------------------LEPMTFL 560 (1141)
T ss_pred hCCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHHHHhc------------------cCCcccc
Confidence 559999999999999878999999999998 699999999999999999995555 8999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccH
Q 000366 1429 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1508 (1612)
Q Consensus 1429 pLd~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~ 1508 (1612)
|||+|+.... .-+|++ +.| +-.|+|.|+|+++|+ .+..|++|+++|-+|+
T Consensus 561 Pld~i~v~~~--------------~e~lr~---~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcds~ 610 (1141)
T KOG0018|consen 561 PLDSIRVKPV--------------NEKLRE---LGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCDSV 610 (1141)
T ss_pred chhhhhcCcc--------------cccccC---cCC-eEEEEEecCCCHHHH------------HHHHHHhccceecCCH
Confidence 9999986322 223443 456 889999999999996 7999999999998766
Q ss_pred HhHHHHHhh-ccCc----eEEecCCeeeccceEEeccCC
Q 000366 1509 KDMIEAHTC-IRHG----AVSLDGGILKEDGIISLGCGN 1542 (1612)
Q Consensus 1509 ~~m~~A~~~-i~~~----~VTLDG~lie~sG~~tgG~~~ 1542 (1612)
++ |+.+ .+.+ +|||||-+|.++|.||||+..
T Consensus 611 e~---Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 611 ED---ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred HH---HHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 55 8866 2333 899999999999999999877
No 12
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=7.2e-13 Score=164.62 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=108.3
Q ss_pred CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000366 1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1429 (1612)
Q Consensus 1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1429 (1612)
..||+|+|.+|+.|+ +.+-+|++..+|.+ +-.+|++|.+.|-.|.+-+ ++-+.||.||||
T Consensus 521 ~ngv~G~v~eL~~v~-~~f~tavEvtaGNs-LF~iVVdndevATkIl~~~------------------n~m~~GrVTF~P 580 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVP-NKFKTAVEVTAGNS-LFNIVVDNDEVATKILRKL------------------NKMKGGRVTFMP 580 (1200)
T ss_pred ccccceehhhhhcCC-HHHHhHHhhhcccc-eEEEEecccHHHHHHHHHH------------------HhccCCeeEEee
Confidence 689999999999996 69999999888885 6666667778787775444 455679999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366 1430 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus 1430 Ld~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
||.|++.... .|.-++. ---+.-|.|+|+|. .+|..|||+|.|. .
T Consensus 581 LNrl~~r~v~-------------yp~~sda-------iPli~kl~y~p~fd------------ka~k~Vfgktivc---r 625 (1200)
T KOG0964|consen 581 LNRLKARDVE-------------YPKDSDA-------IPLISKLRYEPQFD------------KALKHVFGKTIVC---R 625 (1200)
T ss_pred cccCchhhcc-------------CCCCCCc-------cchHHHhCcchhhH------------HHHHHHhCceEEe---c
Confidence 9999983332 2222221 11344688999996 7999999999997 5
Q ss_pred hHHHHHhhccCc---eEEecCCeeeccceEEeccCC
Q 000366 1510 DMIEAHTCIRHG---AVSLDGGILKEDGIISLGCGN 1542 (1612)
Q Consensus 1510 ~m~~A~~~i~~~---~VTLDG~lie~sG~~tgG~~~ 1542 (1612)
+|.+|.++.... .|||+||.++..|+||||+..
T Consensus 626 dl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D 661 (1200)
T KOG0964|consen 626 DLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED 661 (1200)
T ss_pred cHHHHHHHHHhcCCCeEEeccceecccCCccccchh
Confidence 777788776444 899999999999999999875
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.9e-12 Score=162.85 Aligned_cols=120 Identities=23% Similarity=0.205 Sum_probs=95.8
Q ss_pred cccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecC-CeEEEEECCCCCChHhHhh-hhhcccc
Q 000366 142 WDLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAE-DKISVFDTGPGMDSTDENS-IVKWGKM 218 (1612)
Q Consensus 142 ~dL~Pd~~~L~~lg~-~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~-~sItV~DNG~GMs~dEL~~-~~kwGti 218 (1612)
..|+|+....++.|+ ..++.+||+|||+||||| +|++|.|.++-++ ..|.|.|||+||+++||.. +.+++|+
T Consensus 5 r~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA-----GAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 5 RQLPPDLVNQIAAGEVIERPASVVKELVENSLDA-----GATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred eeCCHHHHHHhcccceeecHHHHHHHHHhccccc-----CCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 356777777888888 789999999999999999 8999888888765 5599999999999999974 2333332
Q ss_pred cccccccccccccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000366 219 GASLHRASKAQGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1612)
Q Consensus 219 G~S~~R~~~a~~~Ggk~~~~~~~IGrFGV-GlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~ 279 (1612)
-.+. ..+...+-.||+ |.++||++-.++++|.||+.+...++++.++.
T Consensus 80 KI~~-------------~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g 128 (638)
T COG0323 80 KIAS-------------LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEG 128 (638)
T ss_pred cCCc-------------hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecC
Confidence 2110 112346788899 99999999999999999988878888887775
No 14
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.33 E-value=4.2e-12 Score=126.68 Aligned_cols=117 Identities=25% Similarity=0.323 Sum_probs=96.1
Q ss_pred CCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEec
Q 000366 1351 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL 1430 (1612)
Q Consensus 1351 ~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLpL 1430 (1612)
+||+|.|++|+.| +++|..|++++||+ .|++|||+|.+.|+.+.+++++.+ .||.+|+||
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~-~l~~iVV~~~~~a~~~i~~l~~~~------------------~gr~~~i~l 61 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGG-RLQAIVVEDEETAKKIIEFLKENK------------------LGRATFIPL 61 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGG-GGGSEEESSHHHHHHHHHHHHHTT------------------SCEEEEEET
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHH-hhceEEECcHHHHHHHHHHHhhcc------------------CCeEEEEEC
Confidence 6999999999999 78999999999998 599999999999999999995544 899999999
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccc-cccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366 1431 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus 1431 d~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~-d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
+.+++..... .... ..++|.+.+++|+|+| |+++. .++.++||++.|++
T Consensus 62 ~~~~~~~~~~--------------~~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~--- 111 (120)
T PF06470_consen 62 DKIRSRSSAS--------------SADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD--- 111 (120)
T ss_dssp TTTGGGTTSC--------------CCGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred cccccccccc--------------chhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence 9997643221 0000 0047899999999999 77886 69999999999975
Q ss_pred hHHHHHhh
Q 000366 1510 DMIEAHTC 1517 (1612)
Q Consensus 1510 ~m~~A~~~ 1517 (1612)
++++|+.+
T Consensus 112 ~l~~A~~l 119 (120)
T PF06470_consen 112 DLEEARKL 119 (120)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHh
Confidence 55557754
No 15
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3.8e-11 Score=139.76 Aligned_cols=118 Identities=21% Similarity=0.142 Sum_probs=81.4
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC-eEEEEECCCCCChHhHhhhhhcccccc
Q 000366 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED-KISVFDTGPGMDSTDENSIVKWGKMGA 220 (1612)
Q Consensus 143 dL~Pd~~~L~~lg~-~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~-sItV~DNG~GMs~dEL~~~~kwGtiG~ 220 (1612)
.|.|++....++++ .+++.+||.|||+||+|| +|+.|.|.+..++. .|+|.|||.||+.+++..+ +..+.
T Consensus 5 ~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA-----~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~---~~~~~ 76 (312)
T TIGR00585 5 PLPPELVNKIAAGEVIERPASVVKELVENSLDA-----GATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLA---CERHA 76 (312)
T ss_pred ECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHC-----CCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHH---hhCCC
Confidence 45666665555555 789999999999999999 67888888776543 5999999999999999762 22222
Q ss_pred cccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee-CCCceEEEEE
Q 000366 221 SLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT-KVSKEVYTLH 276 (1612)
Q Consensus 221 S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~-~gs~~v~~l~ 276 (1612)
+.+.... ........+|++|.|+ |+++...+++|.||+ .+....+.+.
T Consensus 77 tsk~~~~------~~~~~~~~~G~rG~al--~si~~~s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 77 TSKIQSF------EDLERIETLGFRGEAL--ASISSVSRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCh------hHhhcccccCccchHH--HHHHhhCcEEEEEeecCCCcceEEEE
Confidence 2110000 0011234567777765 777877899999998 6666666664
No 16
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.13 E-value=1.9e-10 Score=144.97 Aligned_cols=119 Identities=21% Similarity=0.184 Sum_probs=84.0
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecC-CeEEEEECCCCCChHhHhhhhhcccccc
Q 000366 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAE-DKISVFDTGPGMDSTDENSIVKWGKMGA 220 (1612)
Q Consensus 143 dL~Pd~~~L~~lg~-~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~-~sItV~DNG~GMs~dEL~~~~kwGtiG~ 220 (1612)
.|.+++...++.++ ..++.++|.||||||+|| +|++|.|.|..++ ..|+|.|||+||+.+++..+.. ..+
T Consensus 5 ~L~~~v~~~IaAgevI~~~~svvkElveNsiDA-----gat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~---~~~ 76 (617)
T PRK00095 5 LLPPQLANQIAAGEVVERPASVVKELVENALDA-----GATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALA---RHA 76 (617)
T ss_pred ECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhC-----CCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhh---ccC
Confidence 46666666677777 689999999999999999 7899888886543 5799999999999999976322 111
Q ss_pred cccccccccccCCC-CCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 221 SLHRASKAQGIGGK-PPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 221 S~~R~~~a~~~Ggk-~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
+.+ +... ..+....+|+.|.| +||++..++++|.||+.++...+.+.+.
T Consensus 77 tsK-------i~~~~dl~~~~t~GfrGeA--L~sI~~vs~l~i~s~~~~~~~~~~~~~~ 126 (617)
T PRK00095 77 TSK-------IASLDDLEAIRTLGFRGEA--LPSIASVSRLTLTSRTADAAEGWQIVYE 126 (617)
T ss_pred CCC-------CCChhHhhccccCCcchhH--HHhhhhceEEEEEEecCCCCceEEEEec
Confidence 111 0000 01123455666655 5777777899999999876666666544
No 17
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.5e-10 Score=136.44 Aligned_cols=225 Identities=18% Similarity=0.211 Sum_probs=141.9
Q ss_pred cccccCCCHHHHhhCCC--CCC-HHHHHHHHhhcchhhccc-------CCC--ceEEEEEEEe--cCCeEEEEECCCCCC
Q 000366 140 NMWDLTPDTDLLRELPE--DYT-FETALADLIDNSLQAVWT-------NAK--NERRLISVNI--AEDKISVFDTGPGMD 205 (1612)
Q Consensus 140 ~~~dL~Pd~~~L~~lg~--~Ys-l~sALAELVDNSIDA~~~-------Na~--A~~I~I~I~~--d~~sItV~DNG~GMs 205 (1612)
..+.+....+-|..+.. -|| -+.=|+|||-||-||--. +.. .....|+|.. +..+++|.|+|+|||
T Consensus 35 et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMT 114 (656)
T KOG0019|consen 35 ETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMT 114 (656)
T ss_pred cceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcC
Confidence 45666666664444332 354 577799999999999311 111 2334455544 578999999999999
Q ss_pred hHhHhhhhhcccccccccc-cccccc-cCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHh
Q 000366 206 STDENSIVKWGKMGASLHR-ASKAQG-IGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALM 283 (1612)
Q Consensus 206 ~dEL~~~~kwGtiG~S~~R-~~~a~~-~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le 283 (1612)
.+||.+ +.|++..|..+ .-.++. .| .....||+||+|++ ++|..+.+|+|+||+.++. .+.|.-+.
T Consensus 115 k~dLvn--nLGTIAkSGtK~Fmealkea~----ad~~~IGQFGvGFY-SaylVAdkV~V~tk~~~~e-~y~Wes~~---- 182 (656)
T KOG0019|consen 115 KEDLVN--NLGTIAKSGSKAFLEALKEAE----AESNLIGQFGVGFY-SAFMVADRVVVTTRHPADE-GLQWTSNG---- 182 (656)
T ss_pred HHHHHh--hhhhhhhcccHHHHHHHHhcc----cchhhhhhcccchh-hhhhhhheeEEeeccCCCc-ceeeecCC----
Confidence 999976 88998666322 112222 12 23568999999998 5999999999999998765 55552221
Q ss_pred hccccccceeecCCCCCCCcccccCCCCCCeeEEEEeCCC-----CCCcChHHHHHHHHhhhcCcccCCcccCCCccccC
Q 000366 284 RCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPK-----LKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRP 358 (1612)
Q Consensus 284 ~~s~~~~ewel~~~ir~ps~eEi~~s~hGTFT~VVI~eL~-----~~~~~ie~Lrr~Ls~IYhpyL~~d~~~~~gkpidp 358 (1612)
...+.+. +...-.+|| .|++.-.. .....+..+.+..+....++|..-....|- ..
T Consensus 183 -----~gs~~v~---------~~~~~~rGT--ki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ek~N~---tK 243 (656)
T KOG0019|consen 183 -----RGSYEIA---------EASGLRTGT--KIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGERVNN---LK 243 (656)
T ss_pred -----CCceEEe---------eccCccccc--eEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhhhhhc---cC
Confidence 1112221 111123566 88877641 234555555555554444444321111111 11
Q ss_pred eEEEecCcccccccCCeeEEeccccCCCCCceeEeeeee
Q 000366 359 IEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSL 397 (1612)
Q Consensus 359 ief~VNg~~L~dIe~~E~~~~~~hs~~gp~f~l~l~~~l 397 (1612)
.-.+-|..+++..++.+||++-..+|.+|..+. ||+.
T Consensus 244 piW~rnp~dit~eey~eFYksl~ndw~d~lav~--hf~~ 280 (656)
T KOG0019|consen 244 AIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVL--HFKT 280 (656)
T ss_pred cccccCchhhhHHHHHHHHHhhcccccchhhHh--hhcc
Confidence 123668899999999999999999999998887 5544
No 18
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.94 E-value=3.8e-09 Score=127.65 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=111.3
Q ss_pred hhCCC-CCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCe-EEEEECCCCCChHhHhhh-hhcccccccccccccc
Q 000366 152 RELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK-ISVFDTGPGMDSTDENSI-VKWGKMGASLHRASKA 228 (1612)
Q Consensus 152 ~~lg~-~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~s-ItV~DNG~GMs~dEL~~~-~kwGtiG~S~~R~~~a 228 (1612)
++.|+ ...|..||.|||.||+|| +++.|.|.+.-++-+ +.|.|||.||-++||.-+ .+|.|+-.. +.+
T Consensus 19 IAAGEVI~RP~NAlKEliENSLDA-----~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~--kFE-- 89 (694)
T KOG1979|consen 19 IAAGEVIQRPVNALKELIENSLDA-----NSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLT--KFE-- 89 (694)
T ss_pred hhccchhhchHHHHHHHHhccccC-----CCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcc--hhH--
Confidence 45566 579999999999999999 788877766666544 778899999999999742 234443221 111
Q ss_pred cccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhccccccceeecCCCCCCCccccc
Q 000366 229 QGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIA 307 (1612)
Q Consensus 229 ~~~Ggk~~~~~~~IGrFGV-GlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~s~~~~ewel~~~ir~ps~eEi~ 307 (1612)
+...+..||+ |.++||++-..+|+|.||+++..++|+......++.. .| ...
T Consensus 90 ---------DL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~---------------~p--Kpc- 142 (694)
T KOG1979|consen 90 ---------DLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIA---------------TP--KPC- 142 (694)
T ss_pred ---------HHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeecccccc---------------CC--CCc-
Confidence 2346889999 9999999999999999999999998887554322210 11 111
Q ss_pred CCCCCCeeEEEEeCCCC----C----CcChHHHHHHHHhhhcCcccCCccc
Q 000366 308 DSPHGSFTKVEIWEPKL----K----SLDVKPLGCKLKDIYFPYIQCDEIS 350 (1612)
Q Consensus 308 ~s~hGTFT~VVI~eL~~----~----~~~ie~Lrr~Ls~IYhpyL~~d~~~ 350 (1612)
....|| .|++.++.. + ...-++.++-+-.+-+|-||.+.++
T Consensus 143 Agk~GT--~I~vedLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn~~Vs 191 (694)
T KOG1979|consen 143 AGKQGT--IITVEDLFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHNPRVS 191 (694)
T ss_pred cCCCce--EEEehHhhccCHHHHHHhcCcHHHHHHHHHHHHHHheeCCCcc
Confidence 234798 888888721 1 3445555555555666668876653
No 19
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-08 Score=120.44 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=110.7
Q ss_pred cccCCCHHHHhhCCCC--C-CHHHHHHHHhhcchhhccc-------C----CCceEEEEEE--EecCCeEEEEECCCCCC
Q 000366 142 WDLTPDTDLLRELPED--Y-TFETALADLIDNSLQAVWT-------N----AKNERRLISV--NIAEDKISVFDTGPGMD 205 (1612)
Q Consensus 142 ~dL~Pd~~~L~~lg~~--Y-sl~sALAELVDNSIDA~~~-------N----a~A~~I~I~I--~~d~~sItV~DNG~GMs 205 (1612)
+.+...++.+..+.-+ | +-..-|+|||-||-||--. + .......|.| +-.+..+.|.|.|+||+
T Consensus 75 f~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT 154 (785)
T KOG0020|consen 75 FEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMT 154 (785)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCcc
Confidence 4455555544333322 3 4566799999999999311 1 0112234444 44578899999999999
Q ss_pred hHhHhhhhhcccccccccc--cccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHh
Q 000366 206 STDENSIVKWGKMGASLHR--ASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALM 283 (1612)
Q Consensus 206 ~dEL~~~~kwGtiG~S~~R--~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le 283 (1612)
++||.+ +.|++..|-.. ..+.+..|.....-...||+||||++ ++|-+++++.|+||+++.. -|-|.-|..
T Consensus 155 ~edLi~--NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFY-sAfLVAD~vvVtsKhNdD~-QyiWESdan--- 227 (785)
T KOG0020|consen 155 REDLIK--NLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFY-SAFLVADRVVVTSKHNDDS-QYIWESDAN--- 227 (785)
T ss_pred HHHHHH--hhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhh-hhhhhcceEEEEeccCCcc-ceeeeccCc---
Confidence 999965 88888555211 11111112111223568999999998 6899999999999997643 344533321
Q ss_pred hccccccceeecCCCCCCCcccccCCCCCCeeEEEEeCC-----CCCCcChHHHHHHHHhhhcCccc
Q 000366 284 RCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEP-----KLKSLDVKPLGCKLKDIYFPYIQ 345 (1612)
Q Consensus 284 ~~s~~~~ewel~~~ir~ps~eEi~~s~hGTFT~VVI~eL-----~~~~~~ie~Lrr~Ls~IYhpyL~ 345 (1612)
.+.+....+. +.+ +.|| .|++.-. .+...++.+|.+.++...+..|.
T Consensus 228 -------~FsvseDprg---~tL---~RGt--~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~ 279 (785)
T KOG0020|consen 228 -------SFSVSEDPRG---NTL---GRGT--EITLYLKEEAGDYLEEDTLKELVKKYSQFINFPIS 279 (785)
T ss_pred -------ceeeecCCCC---Ccc---cCcc--EEEEEehhhhhhhcchhHHHHHHHHHHHhcCCcee
Confidence 2333222222 222 3688 6665543 34567788888888877777665
No 20
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.78 E-value=1.9e-08 Score=119.48 Aligned_cols=108 Identities=26% Similarity=0.264 Sum_probs=81.5
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEec-C--CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA-E--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~--~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk 234 (1612)
-++.++|.|||+||+||+-.+.=-..|.|+|+.. + -++.|.|||.|++.+.+.+ -||.+= .|++
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPk--vFGk~L-----------ygSK 101 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPK--VFGKML-----------YGSK 101 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHH--HHHHHh-----------ccch
Confidence 4799999999999999973332123466666652 3 3588999999999999976 577653 3344
Q ss_pred CCCCCCCccccccchhhhhhc----ccCEEEEEEeeCCCceEEEEEEe
Q 000366 235 PPYLTPFFGMFGYGGPIASMH----LGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 235 ~~~~~~~IGrFGVGlK~ASfs----LGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
....+...|++|+|.+.|.++ -|+.++|.|++.++..++.+.+-
T Consensus 102 fh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~ 149 (538)
T COG1389 102 FHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELK 149 (538)
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEE
Confidence 445677899999999876655 79999999999987777665443
No 21
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.68 E-value=4.4e-08 Score=121.26 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHhhcchhhcccCCCceEEEEEEEe-cCCeEEEEECCCCCChHhHhh-hhhcccccccccccccccccCCC
Q 000366 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNI-AEDKISVFDTGPGMDSTDENS-IVKWGKMGASLHRASKAQGIGGK 234 (1612)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~-d~~sItV~DNG~GMs~dEL~~-~~kwGtiG~S~~R~~~a~~~Ggk 234 (1612)
.+++.+||.|||+||||| +|+.|.|.+.- +-+.|.|.|||.|+++.+... .+++-++....+
T Consensus 18 I~sl~sAVKELvENSiDA-----GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f----------- 81 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDA-----GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSF----------- 81 (672)
T ss_pred eccHHHHHHHHHhcCccc-----CCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccch-----------
Confidence 689999999999999999 78887777754 457899999999999998863 122222222111
Q ss_pred CCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000366 235 PPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1612)
Q Consensus 235 ~~~~~~~IGrFGV-GlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~ 279 (1612)
.+...+=.||+ |.++.++---..+.|.|++.+......|.+|.
T Consensus 82 --~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh 125 (672)
T KOG1978|consen 82 --ADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDH 125 (672)
T ss_pred --hhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEcc
Confidence 12345567788 87777776668899999998777778888886
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.54 E-value=1.9e-06 Score=114.72 Aligned_cols=143 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000366 1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1429 (1612)
Q Consensus 1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1429 (1612)
.+|++|.+++|+.++ +.|..|++..+|+ .+..||+.+.+.|..+..+++ ....|+.+|+|
T Consensus 518 ~~~~~g~~~~li~~~-~~~~~a~~~~~g~-~~~~ivv~~~~~a~~~~~~l~------------------~~~~g~~~~l~ 577 (1179)
T TIGR02168 518 LSGILGVLSELISVD-EGYEAAIEAALGG-RLQAVVVENLNAAKKAIAFLK------------------QNELGRVTFLP 577 (1179)
T ss_pred cCCCccchhceeeeC-hhHHHHHHHHHHH-HhcCeEECCHHHHHHHHHHhc------------------ccCCCcEEEee
Confidence 478999999999994 7999999998887 577788889998887777873 33489999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366 1430 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus 1430 Ld~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
++.|+..... .+ . .+.++. ..|.+++|.|++.|++.+. .++.+.++.+.++.
T Consensus 578 l~~i~~~~~~----~~-~-----~~~~~~---~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~ivt--- 629 (1179)
T TIGR02168 578 LDSIKGTEIQ----GN-D-----REILKN---IEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVVD--- 629 (1179)
T ss_pred cccccccccc----cc-c-----hhhccc---cCchhHHHHHHhcccHhHH------------HHHHHHhCCceEeC---
Confidence 9999642110 00 0 011221 4689999999999998875 57778888876753
Q ss_pred hHHHHHhhc----cCc-eEEecCCeeeccceEEecc
Q 000366 1510 DMIEAHTCI----RHG-AVSLDGGILKEDGIISLGC 1540 (1612)
Q Consensus 1510 ~m~~A~~~i----~~~-~VTLDG~lie~sG~~tgG~ 1540 (1612)
+++.|.... .+| +||++|+++...|.+++|.
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~ 665 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCc
Confidence 455566543 244 8999999888888887664
No 23
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.48 E-value=7.8e-08 Score=117.63 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=108.4
Q ss_pred HhhCCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhcccccccccccccccc
Q 000366 151 LRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQG 230 (1612)
Q Consensus 151 L~~lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~ 230 (1612)
|++.....++..++.|||-||+|| +|+.|.|.|+...-++.|.|||.||+++||.. .|.-.++.+ .+
T Consensus 13 lrSg~~~~sla~~VeElv~NSiDA-----~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~---lg~ry~TSK-~h---- 79 (1142)
T KOG1977|consen 13 LRSGLAISSLAQCVEELVLNSIDA-----EATCVAVRVNMETFSVQVIDDGFGMGRDDLEK---LGNRYFTSK-CH---- 79 (1142)
T ss_pred HhccchHHHHHHHHHHHHhhcccc-----CceEEEEEecCceeEEEEEecCCCccHHHHHH---HHhhhhhhh-ce----
Confidence 344444679999999999999999 79999999999999999999999999999975 444333211 00
Q ss_pred cCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhccccccceeecCCCCCCCcccccCC
Q 000366 231 IGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADS 309 (1612)
Q Consensus 231 ~Ggk~~~~~~~IGrFGV-GlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD~~~Le~~s~~~~ewel~~~ir~ps~eEi~~s 309 (1612)
.-......-.||+ |.++|+++--+.+.|.|+..+-...+... .+...+ .-....++ ....
T Consensus 80 ----~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~k----k~~~gs-~~~~l~iD----------~~R~ 140 (1142)
T KOG1977|consen 80 ----SVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVK----KFQSGS-ALKALEID----------VTRA 140 (1142)
T ss_pred ----eccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHH----HHhccc-cceecccc----------cccc
Confidence 0112334567888 99999999999999999998865433210 111100 00011111 1123
Q ss_pred CCCCeeEEEEeCC----CCC--------CcChHHHHHHHH--hhhcCcccC
Q 000366 310 PHGSFTKVEIWEP----KLK--------SLDVKPLGCKLK--DIYFPYIQC 346 (1612)
Q Consensus 310 ~hGTFT~VVI~eL----~~~--------~~~ie~Lrr~Ls--~IYhpyL~~ 346 (1612)
.+|| +|++.++ +++ ...++.+++.+. .+.||-|..
T Consensus 141 ~sGT--tVtV~dlfY~lPVRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSf 189 (1142)
T KOG1977|consen 141 SSGT--TVTVYDLFYQLPVRRRLKCMDPRKEFEKIKQRIEAISLMHPSISF 189 (1142)
T ss_pred cCCc--EEEeHHhhhcchhhhhhhcCCHHHHHHHHHHHHHHHHhhccceeE
Confidence 4898 8888886 221 466788888777 456776664
No 24
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.43 E-value=1.5e-06 Score=110.24 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=71.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..+|.|||+||+||.........|.|.+..... .|.|.|||.||+++++..+ |...-+ +++..
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~I--Ferf~~-----------tSKf~ 112 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKV--FGKLLY-----------GSRFH 112 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHH--hhhhcc-----------ccccc
Confidence 48899999999999995222111256666665544 5999999999999999863 332211 11111
Q ss_pred CCCCCccccccchhhhhh-c---ccCEEEEEEeeCCCceEE--EEEEeh
Q 000366 237 YLTPFFGMFGYGGPIASM-H---LGRRALVSSKTKVSKEVY--TLHLEK 279 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~ASf-s---LGrrVtV~SK~~gs~~v~--~l~LD~ 279 (1612)
......|+.|+|+.+|.. + .|..++|.|+..++...+ ++.++.
T Consensus 113 ~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~ 161 (795)
T PRK14868 113 AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDT 161 (795)
T ss_pred ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEec
Confidence 112456888999886442 2 478899999987766554 555553
No 25
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.35 E-value=4.8e-06 Score=103.55 Aligned_cols=107 Identities=29% Similarity=0.339 Sum_probs=69.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec---C--CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA---E--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d---~--~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Gg 233 (1612)
.+..+|.|||+||+||.........|.|.+... + -.|.|.|||.||+.+++.. -|+..-. ++
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~--iF~~f~~-----------~S 102 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPK--VFGKLLY-----------GS 102 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHH--Hhhhhhc-----------cc
Confidence 378999999999999963321122566776642 2 3589999999999999976 2332211 11
Q ss_pred CCCCCCCCccccccchhhhh----hcccCEEEEEEeeCCCceEEEEEEe
Q 000366 234 KPPYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 234 k~~~~~~~IGrFGVGlK~AS----fsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
+........|.+|+|++++. .+.|..++|.|++.+....+.+.+.
T Consensus 103 K~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~ 151 (535)
T PRK04184 103 KFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELK 151 (535)
T ss_pred cccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEE
Confidence 11111346688999998643 2346779999998776544555444
No 26
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.27 E-value=4.2e-06 Score=103.05 Aligned_cols=108 Identities=28% Similarity=0.297 Sum_probs=73.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec-CC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+..++.|||+||+||.........|.|.+... .+ .|+|.|||.||+.+++.. -|+...++ ++.
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~--iF~rf~~t-----------sK~ 94 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPK--VFGKMLAG-----------SKF 94 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHh--hhhhcccc-----------Ccc
Confidence 588999999999999963322122567777653 33 699999999999999976 23332211 111
Q ss_pred CCCCCCccccccchhhhh----hcccCEEEEEEeeCCCceEEEEEEeh
Q 000366 236 PYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSKEVYTLHLEK 279 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~AS----fsLGrrVtV~SK~~gs~~v~~l~LD~ 279 (1612)
...+...|.+|+|+..+. +..|+.++|.|++.|+...+++.++.
T Consensus 95 ~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~i 142 (488)
T TIGR01052 95 HRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKI 142 (488)
T ss_pred ccccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEe
Confidence 112446688899987532 22466799999998887766666553
No 27
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.22 E-value=5.8e-06 Score=105.23 Aligned_cols=131 Identities=19% Similarity=0.178 Sum_probs=80.8
Q ss_pred cCCcccccccccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHh
Q 000366 129 DGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTD 208 (1612)
Q Consensus 129 ~~~~~~~~~~~~~~dL~Pd~~~L~~lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dE 208 (1612)
+.+++..-...+.+..+|.. ..=......+...+.||||||+||... ..+++|.|.|.-+ +.|+|.|||.||+.+.
T Consensus 9 ~~~~i~~L~~lE~VrkRP~m--YiGs~~~~gl~~lv~EivdNaiDe~~a-g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~ 84 (631)
T PRK05559 9 NADSIEVLEGLEPVRKRPGM--YIGSTDTRGLHHLVQEVIDNSVDEALA-GHGKRIEVTLHAD-GSVSVRDNGRGIPVGI 84 (631)
T ss_pred CHHHCeeccchHHHhcCCCc--eeCCCCCchhhhhhhhhhccccchhhc-CCCCEEEEEEeCC-CcEEEEEcCCCCCccc
Confidence 33333333333445555542 222222467999999999999999643 3578877777755 4899999999999887
Q ss_pred Hhhhhhccccccc--ccccccccccCCCCC--CCCCCccccccchhhhhhcccCEEEEEEeeCCCce
Q 000366 209 ENSIVKWGKMGAS--LHRASKAQGIGGKPP--YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKE 271 (1612)
Q Consensus 209 L~~~~kwGtiG~S--~~R~~~a~~~Ggk~~--~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~ 271 (1612)
... -|..... ..+. ..|++.. ......|+.|+|++. .-.+...++|.|++.+..+
T Consensus 85 ~~~---~~~~~~E~v~t~l----hagsKf~~~~yk~SgGl~GvGls~-vNalS~~l~V~s~r~g~~~ 143 (631)
T PRK05559 85 HPE---EGKSGVEVILTKL----HAGGKFSNKAYKFSGGLHGVGVSV-VNALSSRLEVEVKRDGKVY 143 (631)
T ss_pred ccc---cCCcchheeeeec----cccCccCCccccccCcccccchhh-hhhheeeEEEEEEeCCeEE
Confidence 753 1221111 1111 1122221 112568999999864 4467788999999866543
No 28
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.15 E-value=5.9e-06 Score=104.96 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=67.4
Q ss_pred CCHHHHHHHHhhcchh---hcccCCCceEEEEEEEecCCeEEEEECCCCCChHh--------Hhhhhhcccccccccccc
Q 000366 158 YTFETALADLIDNSLQ---AVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTD--------ENSIVKWGKMGASLHRAS 226 (1612)
Q Consensus 158 Ysl~sALAELVDNSID---A~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dE--------L~~~~kwGtiG~S~~R~~ 226 (1612)
.++..+|.||||||+| |. .+++|.|.|+-+ ++|+|.|||.||+.++ +.. -|+...+
T Consensus 29 ~~~~~lv~ElvdNsiDE~~ag----~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~--v~t~lha------ 95 (625)
T TIGR01055 29 TRPNHLVQEVIDNSVDEALAG----FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEV--ILTTLHA------ 95 (625)
T ss_pred CCcceeehhhhhcccchhhcC----CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHH--hhhcccc------
Confidence 4578899999999999 62 588888888766 8999999999999887 432 1222221
Q ss_pred cccccCCCCC--CCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 227 KAQGIGGKPP--YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 227 ~a~~~Ggk~~--~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
|++.. ..+-..|+.|+|++. .-.+.+.++|.|++.+..
T Consensus 96 -----gsK~~~~~~~~SgG~~GvGls~-vnalS~~l~v~~~r~g~~ 135 (625)
T TIGR01055 96 -----GGKFSNKNYHFSGGLHGVGISV-VNALSKRVKIKVYRQGKL 135 (625)
T ss_pred -----cCCCCCCcceecCCCcchhHHH-HHHhcCeEEEEEEECCeE
Confidence 11111 112578999999864 446777899999987655
No 29
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.15 E-value=1e-05 Score=103.44 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCHHHHHHHHhhcchhhcccCCC-ceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccccc-ccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAK-NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLH-RASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~-A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~-R~~~a~~~Ggk~ 235 (1612)
..+..++.||||||+|... ++ +++|.|.|+- .+.|+|.|||.||+.+- ..+.+.+.. -.-.....|++.
T Consensus 29 ~gl~~vv~Elv~NaiDe~~--ag~a~~I~V~i~~-~g~I~V~DnG~GIp~~~------h~~~ki~~~e~i~~~l~ag~kf 99 (654)
T TIGR01059 29 TGLHHLVYEVVDNSIDEAM--AGYCDTINVTIND-DGSVTVEDNGRGIPVDI------HPEEGISAVEVVLTVLHAGGKF 99 (654)
T ss_pred chHHhhhHHhhhccccccc--cCCCCEEEEEEeC-CCcEEEEEeCCCcCccc------cCcCCCCchHHheeeecccCcc
Confidence 5688999999999999321 14 7888888774 45699999999999862 122111100 000011123332
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 236 ~~--~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
.. .....|+.|+|++. .-++.+.++|.|++.+..
T Consensus 100 ~~~~~k~s~G~~G~gl~~-inalS~~l~v~~~~~g~~ 135 (654)
T TIGR01059 100 DKDSYKVSGGLHGVGVSV-VNALSEWLEVTVFRDGKI 135 (654)
T ss_pred CCCcceecCCccchhHHH-HHHhcCeEEEEEEECCeE
Confidence 21 13468999999874 446778899999987655
No 30
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.14 E-value=1.1e-05 Score=102.86 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=68.7
Q ss_pred CCHHHHHHHHhhcchhhcccCCC-ceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhcccccccc-cccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAK-NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASL-HRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~-A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~-~R~~~a~~~Ggk~ 235 (1612)
..+...+.||||||+|... ++ +++|.|.|+-+ +.|+|.|||+||+.+.- .+.+.+. .-.-.....|++.
T Consensus 36 ~gl~~~v~ElvdNaiDe~~--ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h------~~~ki~~~e~i~~~lhag~kf 106 (638)
T PRK05644 36 RGLHHLVYEIVDNSIDEAL--AGYCDHIEVTINED-GSITVTDNGRGIPVDIH------PKTGKPAVEVVLTVLHAGGKF 106 (638)
T ss_pred hhHHhhhHHhhhccccccc--CCCCCEEEEEEeCC-CcEEEEEeCccccCCcc------CCCCCCchHHheeeecccCcc
Confidence 5678899999999999321 14 88888877754 59999999999998622 1211110 0000011123333
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 236 ~~--~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.. ..-..|+.|+|++. .-.+...++|.|++.+. .++..++
T Consensus 107 d~~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g~--~~~~~~~ 148 (638)
T PRK05644 107 GGGGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDGK--IYYQEYE 148 (638)
T ss_pred CCCcccccCCccccchhh-hhheeceEEEEEEeCCc--EEEEEEE
Confidence 21 12368999999874 44677889999998765 3444444
No 31
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.08 E-value=3.8e-05 Score=97.43 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=68.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec-CC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+.+++.|||+||+||.........|.|.+... .. .|.|.|||.||+++++..+ |+..- .+++.
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~i--FerF~-----------atSK~ 102 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKV--FGKML-----------AGSKM 102 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhh--hcccc-----------ccCcc
Confidence 355899999999999963322223677777653 33 3999999999999999762 22211 11111
Q ss_pred CCCCCCccccccchhhhh----hcccCEEEEEEeeCCCc-eEEEEEEe
Q 000366 236 PYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSK-EVYTLHLE 278 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~AS----fsLGrrVtV~SK~~gs~-~v~~l~LD 278 (1612)
.......|..|+|+.++. +..|..+++.|+..+.. ....+.++
T Consensus 103 ~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~ 150 (659)
T PRK14867 103 HRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMS 150 (659)
T ss_pred cceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEE
Confidence 111356788899987654 33577889999985443 23444444
No 32
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.01 E-value=1.6e-05 Score=100.67 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=64.2
Q ss_pred HHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccccc-ccccccccCCCCC--CCC
Q 000366 163 ALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLH-RASKAQGIGGKPP--YLT 239 (1612)
Q Consensus 163 ALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~-R~~~a~~~Ggk~~--~~~ 239 (1612)
.+.||||||+||.... .+++|.|.|+-++ +|+|.|||.||+.+.-. +.+.+.. -.-.....|++.. ...
T Consensus 5 ~v~ElvdNAiD~~~~g-~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~------~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 5 LVDEIVDNAADEALAG-YMDTIKVTIDKDN-SISVEDNGRGIPVEIHP------KEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EEeeehhcccchhccC-CCCEEEEEEeCCC-eEEEEEeCCceeCCccC------cCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 4679999999995433 4888888877664 99999999999964322 1211100 0000112233332 123
Q ss_pred CCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 240 PFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 240 ~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
-..|+.|+|++. .-.+..+++|.|++.+..
T Consensus 77 ~s~G~~G~Gls~-vnalS~~l~v~~~~~g~~ 106 (594)
T smart00433 77 VSGGLHGVGASV-VNALSTEFEVEVARDGKE 106 (594)
T ss_pred ccCCcccchHHH-HHHhcCceEEEEEeCCcE
Confidence 478999999864 446778999999998655
No 33
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.91 E-value=4e-05 Score=98.86 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=64.8
Q ss_pred CCHHHHHHHHhhcchh---hcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccc--ccccccccccC
Q 000366 158 YTFETALADLIDNSLQ---AVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIG 232 (1612)
Q Consensus 158 Ysl~sALAELVDNSID---A~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S--~~R~~~a~~~G 232 (1612)
.-+...+.|+||||+| |. .+++|.|.|+-+ ++|+|.|||.||+.+ ++. .-|..... ... ...|
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG----~a~~I~V~i~~d-gsIsV~DnGrGIPvd-~h~--~~g~~~~Elvlt~----lhAg 103 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAG----HCDDITVTIHAD-GSVSVSDNGRGIPTD-IHP--EEGVSAAEVIMTV----LHAG 103 (756)
T ss_pred cchhhhhhHhhcccccccccC----CCCEEEEEEcCC-CeEEEEEcCCcccCC-ccc--ccCCchhhheeee----eccc
Confidence 5688999999999999 62 378877777654 599999999999987 111 11111110 000 1112
Q ss_pred CCCC---CCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 233 GKPP---YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 233 gk~~---~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
++.. +.. ..|..|+|.+. .-.+...++|.|++.|..
T Consensus 104 gKfd~~~ykv-SgGlhGvG~sv-vNAlS~~l~v~v~r~gk~ 142 (756)
T PRK14939 104 GKFDQNSYKV-SGGLHGVGVSV-VNALSEWLELTIRRDGKI 142 (756)
T ss_pred CCCCCCcccc-cCCccCccceE-eehccCeEEEEEEeCCeE
Confidence 2221 223 68999999863 446777899999987654
No 34
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.73 E-value=0.00017 Score=70.95 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEec--CCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d--~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
+..+|.||++||+++...+ .+|.|.+... .-.|+|.|||.||+.+++..+..- ..+. . .
T Consensus 6 l~~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~---~~~~-----------~--~ 66 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEP---FFTS-----------D--K 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCST---TSHS-----------S--S
T ss_pred HHHHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEeccccccccccccchhh---cccc-----------c--c
Confidence 6789999999999996443 4677777764 456889999999999999862111 1100 0 0
Q ss_pred CCCCccccccchhhhh---hcccCEEEEEEeeCCCceEEEEEEe
Q 000366 238 LTPFFGMFGYGGPIAS---MHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 238 ~~~~IGrFGVGlK~AS---fsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.....+.+|+|++.+. -.++-++.+.+...+. ....+.++
T Consensus 67 ~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~g-t~v~~~~p 109 (111)
T PF02518_consen 67 SETSISGHGLGLYIVKQIAERHGGELTIESSEGGG-TTVTFTLP 109 (111)
T ss_dssp SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTE-EEEEEEEE
T ss_pred cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCc-EEEEEEEE
Confidence 1234455899986422 2355667887776433 33444444
No 35
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.39 E-value=0.00089 Score=85.77 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
..+...+.|+||||+|-... ..+++|.|.|+ ..++|+|.|||.||+-+ .+. .-+...... --.....|++...
T Consensus 33 ~GL~hlv~EIvdNavDE~~a-g~~~~I~V~i~-~dgsitV~DnGrGIPv~-~h~--~~~~~~~E~--v~t~LhaGgkfd~ 105 (637)
T TIGR01058 33 KGLHHLVWEIVDNSVDEVLA-GYADNITVTLH-KDNSITVQDDGRGIPTG-IHQ--DGNISTVET--VFTVLHAGGKFDQ 105 (637)
T ss_pred chhheehhhhhcchhhhhhc-CCCcEEEEEEc-CCCeEEEEECCCcccCc-ccC--cCCCcccee--EEEEecccCcCCC
Confidence 45778889999999996432 35778777777 45699999999999864 211 011111100 0001122343321
Q ss_pred --CCCCccccccchhhhhhcccCEEEEEEeeCCCceEE
Q 000366 238 --LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVY 273 (1612)
Q Consensus 238 --~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~ 273 (1612)
-.-.-|..|+|.+. .=.+...++|.+++.|..+.-
T Consensus 106 ~~ykvSGGlhGvG~sv-vNAlS~~~~V~v~r~gk~~~q 142 (637)
T TIGR01058 106 GGYKTAGGLHGVGASV-VNALSSWLEVTVKRDGQIYQQ 142 (637)
T ss_pred CcccccCCcccccccc-cceeeceEEEEEEECCEEEEE
Confidence 12346999999763 556778899999976654433
No 36
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.05 E-value=0.0027 Score=85.54 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=67.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccc--ccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S--~~R~~~a~~~Ggk~~ 236 (1612)
-+..-+-|+||||+|-......++.|.|.|+.+.++|+|.|||.||+-+--. .-|.+.+. .. ....|++..
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~---~~g~~~~ElIft----~LhaGgkFd 124 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHK---EEGVYVPELIFG----HLLTSSNFD 124 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCCeEEEEecCccccCCCCC---CCCCccceEEEE----eeccccccC
Confidence 5778899999999998644446788888888778899999999999875221 12222211 11 122244432
Q ss_pred C--CCCCccccccchhhhhhcccCEEEEEEe
Q 000366 237 Y--LTPFFGMFGYGGPIASMHLGRRALVSSK 265 (1612)
Q Consensus 237 ~--~~~~IGrFGVGlK~ASfsLGrrVtV~SK 265 (1612)
. -.-.-|+-|||.+. .=.+...++|.++
T Consensus 125 d~~ykvSGGlhGvGasv-vNaLS~~f~Vev~ 154 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAKL-ANIFSTEFTVETA 154 (1135)
T ss_pred CccceeeccccCCCCeE-EEeecCeEEEEEE
Confidence 1 13367999999764 4467788999998
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.88 E-value=0.0078 Score=79.15 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=81.4
Q ss_pred HHHHHHH-HhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc--C----CHHHHHHHH--------------HH
Q 000366 1266 NELESEV-RNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSL--L----TKEEIIRRI--------------KS 1324 (1612)
Q Consensus 1266 ~k~q~~l-~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~--~----~~E~~~k~i--------------~~ 1324 (1612)
..++.++ +.+|..+.+.|+.++.|++|...+++++..|...+..+.. . ..+.+...| +.
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 6777778888888888888888888877777777764421 0 111111111 11
Q ss_pred h----hc--cc--cccccccccccccCCCCCCCCCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHH
Q 000366 1325 I----YQ--SA--ASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALE 1396 (1612)
Q Consensus 1325 ~----~~--sa--a~i~~~l~~r~~~~~~~s~~~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le 1396 (1612)
+ .| ++ ..++..|..=+ -..+.+-.-.+|.++...++.+++++.+++..||+ .+++-+|.+...+..|.
T Consensus 462 lk~~k~dkvs~FG~~m~~lL~~I~---r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr 537 (1074)
T KOG0250|consen 462 LKKTKTDKVSAFGPNMPQLLRAIE---RRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILR 537 (1074)
T ss_pred HHhcccchhhhcchhhHHHHHHHH---HHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHH
Confidence 1 11 11 11222222200 01112345578999999999999999999999998 79999999998888887
Q ss_pred Hhh
Q 000366 1397 KYE 1399 (1612)
Q Consensus 1397 ~Yl 1399 (1612)
...
T Consensus 538 ~i~ 540 (1074)
T KOG0250|consen 538 AIM 540 (1074)
T ss_pred HHH
Confidence 655
No 38
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.85 E-value=0.0053 Score=83.58 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccc--ccccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S--~~R~~~a~~~Ggk~ 235 (1612)
.-+.-.+-|+||||+|-.......+.|.|.|+.+.++|+|+|||.||+-+ ++. ..|.+... .. ....|+++
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~--~eg~~~pElIft----~LhAGgkF 148 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQ--EEGVYVPEMIFG----HLLTSSNY 148 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCC-CCC--CCCCccceEEEE----eeeccccC
Confidence 35778899999999998644445788888888888999999999999865 221 12222211 11 12234443
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEe
Q 000366 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSK 265 (1612)
Q Consensus 236 ~~--~~~~IGrFGVGlK~ASfsLGrrVtV~SK 265 (1612)
.. ..-.-|+-|||.+. .=.+...++|.++
T Consensus 149 dd~~yKvSGGlhGVGasv-vNaLS~~f~Vev~ 179 (1465)
T PLN03237 149 DDNEKKTTGGRNGYGAKL-TNIFSTEFVIETA 179 (1465)
T ss_pred CCCcceeeccccccCccc-cccccCeeEEEEE
Confidence 21 23467999999774 5567788999998
No 39
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.008 Score=75.78 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhccccccc--ccccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S--~~R~~~a~~~Ggk~ 235 (1612)
..+-.-+-|+||||+|-.... -++.|.|.++ ..++|+|.|||.||+-+-=.. .+..... .. ....|+++
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG-~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~---~~~~~vEvI~T----~LHAGGKF 105 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAG-YADRIDVTLH-EDGSISVEDNGRGIPVDIHPK---EKVSAVEVIFT----VLHAGGKF 105 (635)
T ss_pred CcceeeEeEeeechHhHHhhC-cCcEEEEEEc-CCCeEEEEECCCCCccccCCC---CCCCceEEEEE----eeccCccc
Confidence 456677889999999985444 5777777666 778999999999999764221 1111111 11 12234544
Q ss_pred CCC--CCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 236 PYL--TPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 236 ~~~--~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
..+ .-.=|..|||.+ ..=.|...+.|.+++.|..
T Consensus 106 d~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk~ 141 (635)
T COG0187 106 DNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGKI 141 (635)
T ss_pred CCCccEeecCCCccceE-EEecccceEEEEEEECCEE
Confidence 321 224588899964 3456778899999987644
No 40
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.46 E-value=0.0071 Score=82.55 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=77.1
Q ss_pred cccccccCCCHHHH--hhCCCCCCHHHHHHHHhhcchhhcccC---CCceEEEEEEEecCCeEEEEECCCCCChHhHhhh
Q 000366 138 FENMWDLTPDTDLL--RELPEDYTFETALADLIDNSLQAVWTN---AKNERRLISVNIAEDKISVFDTGPGMDSTDENSI 212 (1612)
Q Consensus 138 ~~~~~dL~Pd~~~L--~~lg~~Ysl~sALAELVDNSIDA~~~N---a~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~ 212 (1612)
++.+|-+.+....+ +.....--+...+-|+||||+|-..+. ..++.|.|.|+-+.++|+|+|||.||+-+- +.
T Consensus 34 ~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~-h~- 111 (1388)
T PTZ00108 34 TEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQI-HK- 111 (1388)
T ss_pred ccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCCeEEEEecCCcccCCC-CC-
Confidence 35556555543311 112223367888999999999986543 356888888887778999999999997652 21
Q ss_pred hhccccccc--ccccccccccCCCCCC--CCCCccccccchhhhhhcccCEEEEEEeeC
Q 000366 213 VKWGKMGAS--LHRASKAQGIGGKPPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTK 267 (1612)
Q Consensus 213 ~kwGtiG~S--~~R~~~a~~~Ggk~~~--~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~ 267 (1612)
..+.+.+. .. ....|+++.. ..-.-|+-|||.+. +=.+...++|.++..
T Consensus 112 -~~~~~~pElIft----~L~aGgkfdd~~yKvSGGlhGVGasv-vNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 112 -EHKIYVPEMIFG----HLLTSSNYDDTEKRVTGGRNGFGAKL-TNIFSTKFTVECVDS 164 (1388)
T ss_pred -CCCCccceEEEE----EeeccccCCCCceeeecccccCCccc-cccccceEEEEEEEC
Confidence 12222111 01 1122344321 23467999999774 557788999999987
No 41
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.41 E-value=0.013 Score=75.03 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcchhhcccC--CCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 160 FETALADLIDNSLQAVWTN--AKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~N--a~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
+...+-|+||||+|-.... ..+++|.|.|+ .++|+|.|||.||+-+--.....-+..+... --.....|++...
T Consensus 46 L~hi~~EIldNavDe~~~~~~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~--i~t~LhaGgkFd~ 121 (602)
T PHA02569 46 LVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVA--AWTRTKAGSNFDD 121 (602)
T ss_pred ceeeeehhhhhhhhhhhccCCCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEE--EEEeeccccccCC
Confidence 4455679999999975441 14778777777 7789999999999754321100000111110 0001223444421
Q ss_pred -CCCCccccccchhhhhhcccCEEEEEEeeC
Q 000366 238 -LTPFFGMFGYGGPIASMHLGRRALVSSKTK 267 (1612)
Q Consensus 238 -~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~ 267 (1612)
-.-.-|+-|||.+. .=.+...++|.++..
T Consensus 122 ~ykvSGGlhGVG~sv-vNaLS~~~~V~v~~~ 151 (602)
T PHA02569 122 TNRVTGGMNGVGSSL-TNFFSVLFIGETCDG 151 (602)
T ss_pred cceeeCCcCCcccee-eeccchhhheEEEcC
Confidence 12357999999764 446777888877543
No 42
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.38 E-value=0.013 Score=73.06 Aligned_cols=101 Identities=29% Similarity=0.354 Sum_probs=69.5
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCe--EEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~s--ItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
..+.+.|.-|||||+||.......+.|.+.+...++. |.|.|||+||+++....+.. .|+|.
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe---~G~St------------- 489 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFE---KGVST------------- 489 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHh---cCccc-------------
Confidence 4688999999999999987432346677777766554 77999999999998875222 12221
Q ss_pred CCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000366 236 PYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD~ 279 (1612)
+.-+.-|+|+++ ..=.+|-.++|.|.. +....+.+.|.+
T Consensus 490 ----k~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~-~~Gt~F~i~iP~ 531 (537)
T COG3290 490 ----KNTGGRGIGLYLVKQLVERLGGSIEVESEK-GQGTRFSIYIPK 531 (537)
T ss_pred ----cCCCCCchhHHHHHHHHHHcCceEEEeeCC-CCceEEEEECCC
Confidence 123455888875 444588899999974 334456666654
No 43
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.37 E-value=0.029 Score=52.68 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEecC--CeEEEEECCCCCChHhHhh
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~~ 211 (1612)
+..++.|+++|++++... ...|.|.+..+. -.|.|.|||.||+.+++..
T Consensus 6 l~~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~ 56 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEK 56 (111)
T ss_pred HHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 667899999999999422 245777777654 4588999999999998875
No 44
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.27 E-value=0.021 Score=52.69 Aligned_cols=88 Identities=26% Similarity=0.290 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEecC--CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
+..++.||++||+++... ....|.|.+..+. -.|.|.|+|.||++..+..+ +.... . ..
T Consensus 1 l~~~~~~ll~Na~~~~~~--~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~--~~~~~-------------~--~~ 61 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE--GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERI--FERFS-------------D--GS 61 (103)
T ss_pred CHHHHHHHHHHHHHhCcC--CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHH--hhhhh-------------c--CC
Confidence 357899999999999532 1245666666654 35889999999999988651 11000 0 01
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEee
Q 000366 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKT 266 (1612)
Q Consensus 238 ~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~ 266 (1612)
.....+.+|+|++.+ +..++..+.+.+..
T Consensus 62 ~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 62 RSRKGGGTGLGLSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred CCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 122345678888752 23355688887765
No 45
>PRK10604 sensor protein RstB; Provisional
Probab=96.11 E-value=0.034 Score=67.87 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=62.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+.+. ...|.|++..+++ .|.|.|||.||+.+++..+..-. + |.. .
T Consensus 319 ~l~~vl~NLl~NAik~~-----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f---~---r~~---------~ 378 (433)
T PRK10604 319 LMERVLDNLLNNALRYA-----HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPF---V---RLD---------P 378 (433)
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCC---c---cCC---------C
Confidence 36789999999999983 4567777776543 58899999999999997521100 0 000 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~L 277 (1612)
.....-|.+|+|+.. .+-..|..+++.+...+ ...+++.+
T Consensus 379 ~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~-G~~f~i~l 421 (433)
T PRK10604 379 SRDRATGGCGLGLAIVHSIALAMGGSVNCDESELG-GARFSFSW 421 (433)
T ss_pred CCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCC-eeEEEEEE
Confidence 001123457888864 34457888999887543 33344433
No 46
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.94 E-value=0.0084 Score=78.51 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=48.9
Q ss_pred ecCCcccccccccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChH
Q 000366 128 YDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDST 207 (1612)
Q Consensus 128 ~~~~~~~~~~~~~~~dL~Pd~~~L~~lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~d 207 (1612)
|+.+++.-=..-+.+..+|.. .+-.....-+...+-|+||||+|-... ..++.|.|.|.- .++|+|.|||.||+-+
T Consensus 100 Y~a~~I~vLeGLEaVRkRPGM--YIGst~~~GLhhLv~EIlDNSVDE~la-G~~~~I~V~i~~-DgsItV~DnGRGIPvd 175 (903)
T PTZ00109 100 YDADDIVVLEGLEAVRKRPGM--YIGNTDEKGLHQLLFEILDNSVDEYLA-GECNKITVVLHK-DGSVEISDNGRGIPCD 175 (903)
T ss_pred CChHhCeehhccHHHhcCCCc--eeCCCCCCcceEEEEEEeeccchhhcc-CCCcEEEEEEcC-CCeEEEEeCCcccccc
Confidence 455554333333444555532 221111345677789999999997544 357777777754 4789999999999875
Q ss_pred h
Q 000366 208 D 208 (1612)
Q Consensus 208 E 208 (1612)
.
T Consensus 176 ~ 176 (903)
T PTZ00109 176 V 176 (903)
T ss_pred c
Confidence 3
No 47
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=95.91 E-value=0.039 Score=64.90 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=62.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+.+.. ....|.|.+..+++ .|+|.|||.||+++++..+..-. + |.
T Consensus 247 ~l~~il~nLi~NA~k~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f---~---~~----------- 306 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSP---EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAF---V---RM----------- 306 (356)
T ss_pred HHHHHHHHHHHHHHhhCC---CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCe---E---eC-----------
Confidence 467899999999999841 23457777765443 58899999999999987521110 0 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
...-+-+|+|++.+ +-.+|..+.+.|...+......+.+.
T Consensus 307 --~~~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p 349 (356)
T PRK10755 307 --DSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLP 349 (356)
T ss_pred --CCCCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEec
Confidence 00123458887642 33578889999987523344444443
No 48
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.68 E-value=0.048 Score=65.77 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
+..++.+||+||+.+. ...|.|++..+++ .|+|.|||.||+.+++..+ | ...++. . ..
T Consensus 354 l~~~l~nli~NA~~~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i--f-~~~~~~---~---------~~ 413 (461)
T PRK09470 354 LASALENIVRNALRYS-----HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQI--F-RPFYRV---D---------EA 413 (461)
T ss_pred HHHHHHHHHHHHHHhC-----CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHh--c-CCCccC---C---------cc
Confidence 5678999999999983 3457777766544 4889999999999998752 1 111100 0 00
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEeeCC
Q 000366 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKTKV 268 (1612)
Q Consensus 238 ~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~g 268 (1612)
.....+.+|+|+..+ .-..+..+.+.|...+
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~ 447 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLG 447 (461)
T ss_pred cCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCC
Confidence 011234568887652 3357778888887644
No 49
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.67 E-value=0.05 Score=65.39 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=56.2
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+.+ +...|.|.+..+++ .|+|.|||.||+++++..+..-+. | +.
T Consensus 331 ~l~~il~NLl~NA~k~-----~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~------~-------~~--- 389 (435)
T PRK09467 331 AIKRALANLVVNAARY-----GNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFT------R-------GD--- 389 (435)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcc------c-------CC---
Confidence 3567899999999988 34567777766544 488999999999999875221110 0 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCC
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKV 268 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~g 268 (1612)
..+. -+-+|+|+..+ +-..|..+++.+...+
T Consensus 390 ~~~~-~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 390 SARG-SSGTGLGLAIVKRIVDQHNGKVELGNSEEG 423 (435)
T ss_pred CCCC-CCCeehhHHHHHHHHHHCCCEEEEEECCCC
Confidence 0111 13468887641 2236778888776544
No 50
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=95.65 E-value=0.072 Score=64.65 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecC--CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..|++||+++.. ....|.|.+..+. -.|+|.|||.||+.+++..+..- .++.. .
T Consensus 317 ~l~~vl~NLl~NAik~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~---f~~~~---~--------- 378 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTP---EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTER---FYRVD---K--------- 378 (430)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccC---ccccc---C---------
Confidence 578999999999999952 2245667666544 35889999999999998762111 10000 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEeh
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD~ 279 (1612)
......+-.|+|+..+ +-..|..+.+.|... ....+.+.+..
T Consensus 379 ~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~-~Gt~f~i~lP~ 423 (430)
T PRK11006 379 ARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVG-KGTRFSFVLPE 423 (430)
T ss_pred CCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCC-CceEEEEEech
Confidence 0011223458887642 334788899988763 33445555554
No 51
>PRK10364 sensor protein ZraS; Provisional
Probab=95.54 E-value=0.073 Score=65.07 Aligned_cols=95 Identities=24% Similarity=0.257 Sum_probs=61.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..|++||++|.. ....|.|.+..+++ .|.|.|||.||+++.+..+..-+ ++
T Consensus 348 ~l~~il~NLl~NA~k~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~---~~--------------- 406 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG---QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPY---FT--------------- 406 (457)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCcc---cc---------------
Confidence 577899999999999952 23467777766543 58899999999999987632111 11
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.+.-| .|+|++. .+-..|.++.+.|...+ ...+++.+.
T Consensus 407 --~k~~g-~GlGL~iv~~~v~~~gG~i~i~s~~~~-Gt~f~i~lP 447 (457)
T PRK10364 407 --TKAEG-TGLGLAVVHNIVEQHGGTIQVASQEGK-GATFTLWLP 447 (457)
T ss_pred --CCCCC-CcccHHHHHHHHHHCCCEEEEEeCCCC-cEEEEEEec
Confidence 01112 4788764 23347788888887533 334445444
No 52
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.43 E-value=0.08 Score=63.81 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=56.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEe-cCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI-AED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~-d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+..+|..||+||+.+... ...|.|.+.. ++. .|+|.|||.||+.+++..+..- .. |.
T Consensus 272 ~l~qvl~NLl~NAik~~~~---~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~p---f~---~~---------- 332 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPE---GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFED---RV---RL---------- 332 (380)
T ss_pred HHHHHHHHHHHHHHhcCCC---CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccC---ce---eC----------
Confidence 3778999999999999422 2356666543 333 5889999999999998752110 00 00
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEeeCC
Q 000366 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKV 268 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~g 268 (1612)
+. ....+-+|+|+..+ +-.+|..+.|.|...+
T Consensus 333 ~~-~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~ 367 (380)
T PRK09303 333 PR-DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQ 367 (380)
T ss_pred CC-CCCCCcccccHHHHHHHHHHcCCEEEEEecCCC
Confidence 00 11223468888642 2347888999888643
No 53
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=95.35 E-value=0.097 Score=65.19 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcchhhcccCC-CceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
+...+.+|++||++|...+. +...|.|.+....+ .|.|.|||.||++++...+..- +++. +
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~---~~~t-----------k-- 496 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ---GVST-----------R-- 496 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC---CCCC-----------C--
Confidence 55689999999999965443 23567777766544 4889999999999998763221 1110 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
....|..|+|++.+ +-..|..++|.|.. +....+++.+.
T Consensus 497 --~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~-~~Gt~f~i~lP 538 (545)
T PRK15053 497 --ADEPGEHGIGLYLIASYVTRCGGVITLEDND-PCGTLFSIFIP 538 (545)
T ss_pred --CCCCCCceeCHHHHHHHHHHcCCEEEEEECC-CCeEEEEEEEC
Confidence 11223348887642 22467788988875 33345555554
No 54
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=95.30 E-value=0.11 Score=62.48 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=38.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhh
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~ 211 (1612)
.+..++.+|++||+.+.. ....|.|++..+++ .|+|.|||.||+++++..
T Consensus 353 ~l~~~~~nll~Nai~~~~---~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~ 404 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP---DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSR 404 (457)
T ss_pred HHHHHHHHHHHHHHHcCC---CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 467899999999999841 22457777766544 588999999999998865
No 55
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=95.07 E-value=0.093 Score=63.21 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=56.9
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++.+||.||+.+. .+...|.|++...++ .|+|.|||.||+++++..+..- ..+..+
T Consensus 368 ~l~~vl~nli~Na~~~~---~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~---~~~~~~------------ 429 (475)
T PRK11100 368 LLRQALGNLLDNAIDFS---PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFER---FYSLPR------------ 429 (475)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHH---HccCCC------------
Confidence 46788999999999984 223567777766543 4889999999999999763211 111000
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCC
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKV 268 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~g 268 (1612)
....-+..|+|++. -.-.+|..+.+.|...+
T Consensus 430 -~~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 430 -PANGRKSTGLGLAFVREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred -CCCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCC
Confidence 00111234677664 22346778899887643
No 56
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=95.06 E-value=0.1 Score=67.67 Aligned_cols=86 Identities=26% Similarity=0.212 Sum_probs=55.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++.+||+||+++.. ....|.|++..+++ .|.|.|||.||+++.+.+ +.-.... +
T Consensus 579 ~l~~vl~nLl~NAik~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~--~lF~pf~-------------~-- 638 (679)
T TIGR02916 579 RLERVLGHLVQNALEATP---GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRE--RLFKPFD-------------T-- 638 (679)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHH--hcCCCCC-------------C--
Confidence 477899999999999951 23457777776444 588999999999998432 1100000 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeC
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTK 267 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~ 267 (1612)
.+. +-.|+|+..+ +-.+|.++++.|...
T Consensus 639 --~~~-~G~GLGL~i~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 639 --TKG-AGMGIGVYECRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred --CCC-CCcchhHHHHHHHHHHcCCEEEEEecCC
Confidence 011 3457787642 334788899988763
No 57
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=95.00 E-value=0.12 Score=62.84 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=57.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+.+.. ....|.|.+..+.+ .|.|.|||.||+++++..+ |- |... +. .
T Consensus 352 ~l~qvl~nll~NAi~~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~l--f~-------~~~~----~~--~ 413 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD---SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKL--FE-------RFYR----TE--G 413 (466)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHh--cc-------Cccc----CC--C
Confidence 367889999999999841 22457777766554 4779999999999998752 10 0000 00 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCC
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKV 268 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~g 268 (1612)
......|..|+|+.. -+-..|.++.+.+...+
T Consensus 414 ~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~ 448 (466)
T PRK10549 414 SRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFG 448 (466)
T ss_pred CcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 001123445888764 23347788899887643
No 58
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=94.80 E-value=0.19 Score=57.09 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++.+||.||+++. .....|.|.+...++ .|.|.|||.||+.+.+..+..... +... .
T Consensus 229 ~l~~vl~nll~Nai~~~---~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~---~~~~-----------~ 291 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYT---PEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFY---RVDK-----------S 291 (333)
T ss_pred HHHHHHHHHHHHhheeC---CCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCce---ecCc-----------c
Confidence 46789999999999984 223457777766443 488999999999999875221111 0000 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeC
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTK 267 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~ 267 (1612)
.....-| .|+|++. -+-.+|..+.+.|...
T Consensus 292 ~~~~~~g-~glGL~~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 292 RSRDTGG-TGLGLAIVKHVLSRHHARLEIESELG 324 (333)
T ss_pred cccCCCC-CcccHHHHHHHHHHCCCEEEEEecCC
Confidence 0011122 3777764 2334788899888763
No 59
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.65 E-value=0.13 Score=67.96 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=61.2
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..+|..||+||+.++ ....|.|++...++ .|+|.|||.||+++++..+..- ....
T Consensus 513 ~l~~il~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-------------f~~~---- 571 (921)
T PRK15347 513 RLRQILVNLLGNAVKFT----ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTP-------------FYQA---- 571 (921)
T ss_pred HHHHHHHHHHHHHhhcC----CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcC-------------cccC----
Confidence 37789999999999995 33447777766544 5889999999999998763110 0000
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
....+-.|+|+..+ +-.+|..++|.|... ....+++.+.
T Consensus 572 --~~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~-~Gt~f~i~lp 613 (921)
T PRK15347 572 --DTHSQGTGLGLTIASSLAKMMGGELTLFSTPG-VGSCFSLVLP 613 (921)
T ss_pred --CCCCCCCchHHHHHHHHHHHcCCEEEEEecCC-CceEEEEEEE
Confidence 01123458887642 234677899988763 2334444444
No 60
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.65 E-value=0.14 Score=57.02 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecC--CeEEEEECCCCCChHhHhh
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~~ 211 (1612)
..+..++..||+||++|.. ...|.|.+.... -.|.|.|||.||+.+.+..
T Consensus 227 ~~l~~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 3577899999999999942 456677766654 4689999999999999765
No 61
>PRK10337 sensor protein QseC; Provisional
Probab=94.64 E-value=0.11 Score=62.95 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=54.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYL 238 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~ 238 (1612)
.+..++..||+||+.+... ... |.|......|+|.|||.||+++++..+.. -.+ | + +
T Consensus 352 ~l~~vl~Nli~NA~k~~~~---~~~--i~i~~~~~~i~i~D~G~Gi~~~~~~~if~---~f~---~-------~---~-- 408 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQ---GSV--VDVTLNARNFTVRDNGPGVTPEALARIGE---RFY---R-------P---P-- 408 (449)
T ss_pred HHHHHHHHHHHHHHhhCCC---CCe--EEEEEEeeEEEEEECCCCCCHHHHHHhcc---ccc---C-------C---C--
Confidence 3566899999999999411 123 44444445799999999999999875211 000 0 0 0
Q ss_pred CCCccccccchhh---hhhcccCEEEEEEeeCC
Q 000366 239 TPFFGMFGYGGPI---ASMHLGRRALVSSKTKV 268 (1612)
Q Consensus 239 ~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~g 268 (1612)
....+..|+|++. -+-..|.++++.+...+
T Consensus 409 ~~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~ 441 (449)
T PRK10337 409 GQEATGSGLGLSIVRRIAKLHGMNVSFGNAPEG 441 (449)
T ss_pred CCCCCccchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 0122346888764 23346788888887543
No 62
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.56 E-value=0.24 Score=50.99 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=35.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCe--EEEEECCCCCCh
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDS 206 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~s--ItV~DNG~GMs~ 206 (1612)
.+..|+.|++.||+.+.........|.|.+...++. |.|.|||.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCc
Confidence 577899999999997632222235677777765544 789999999973
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.51 E-value=0.19 Score=65.88 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=60.9
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+.+.- ....|.|.+..+.+ .|+|.|||.||+.+++..+..-. .+.+ .
T Consensus 597 ~L~~il~NLI~NAik~s~---~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F---~t~~------------~ 658 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP---EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM---VSVR------------D 658 (703)
T ss_pred HHHHHHHHHHHHHHHHCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC---eecC------------C
Confidence 477899999999999842 23346777666544 48899999999999987521110 0000 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEE
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTL 275 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l 275 (1612)
.....-+-.|+|++. -+-..|..+.+.+...+....+++
T Consensus 659 ~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I 700 (703)
T TIGR03785 659 QGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRI 700 (703)
T ss_pred CCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEE
Confidence 001112236888875 234577888888876533333333
No 64
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=94.42 E-value=0.25 Score=59.44 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcchhhcccCCC-ceEEEEEEEecC--CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNAK-NERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~-A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
+..++..|+.||+++...+.. ...|.|.+.... -.|+|.|||.||+.+....+ |-.. ++ .+.+
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~i--F~~f-~~-----------~~~~ 453 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKV--FEPF-FT-----------TKGG 453 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHh--cCCC-cc-----------cCCC
Confidence 688999999999999644421 123455444433 35889999999999988652 1100 00 0000
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeC
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTK 267 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~ 267 (1612)
..-| -|+|+.+ -.-.+|-.+.|.|...
T Consensus 454 ---~~~G-~GlGL~i~~~iv~~~gG~i~~~s~~~ 483 (494)
T TIGR02938 454 ---SRKH-IGMGLSVAQEIVADHGGIIDLDDDYS 483 (494)
T ss_pred ---CCCC-CcccHHHHHHHHHHcCCEEEEEECCC
Confidence 0112 3677653 1224789999988764
No 65
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.29 E-value=0.14 Score=63.10 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=37.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec--C-CeEEEEECCCCCChHhHhh
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--E-DKISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d--~-~sItV~DNG~GMs~dEL~~ 211 (1612)
.+..++.+|++||+.+... ...|.|++... . -.|.|.|||.||+.+++..
T Consensus 500 ~l~~~~~nli~na~~~~~~---~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~ 552 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA---RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKK 552 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhh
Confidence 4778999999999998421 23566666543 2 4588999999999998865
No 66
>PRK10815 sensor protein PhoQ; Provisional
Probab=94.24 E-value=0.17 Score=63.24 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..||+||+++. ...+.|.+..+++ .|+|.|||.||+++++..+..-+ . | ..
T Consensus 378 ~l~~vl~NLi~NAik~~-----~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f---~---~----------~~ 436 (485)
T PRK10815 378 DFMEVMGNVLDNACKYC-----LEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRG---Q---R----------AD 436 (485)
T ss_pred HHHHHHHHHHHHHHHhc-----CCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc---c---c----------CC
Confidence 36789999999999994 3346676666544 58899999999999987521100 0 0 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
...+-.|+|+..+ +-..|..+.+.|...+ ....++.+.
T Consensus 437 ---~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~-Gt~f~i~lp 477 (485)
T PRK10815 437 ---TLRPGQGLGLSVAREITEQYEGKISAGDSPLG-GARMEVIFG 477 (485)
T ss_pred ---CCCCCcchhHHHHHHHHHHcCCEEEEEECCCC-EEEEEEEEc
Confidence 0112358888752 2247788899887643 234444443
No 67
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.23 E-value=0.16 Score=59.24 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=57.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec-------C-----CeEEEEECCCCCChHhHhhhhhcccccccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-------E-----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRAS 226 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-------~-----~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~ 226 (1612)
.+..++..|++||+.|... ....|.|.+... . -.|.|.|||.||+++.+..+ | ...++
T Consensus 237 ~l~~vl~nLl~NA~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i--F-~~~~~----- 306 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGP--EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL--F-YPMVS----- 306 (348)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc--c-CCccc-----
Confidence 4789999999999999521 234455554321 1 25889999999999988652 1 11110
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000366 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1612)
Q Consensus 227 ~a~~~Ggk~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~L 277 (1612)
.+. +--|+|++. .+-..|..+.+.|...+ ..+.+.+
T Consensus 307 ------------~~~-~g~GlGL~i~~~iv~~~gG~i~~~s~~~~--~~f~i~l 345 (348)
T PRK11073 307 ------------GRE-GGTGLGLSIARNLIDQHSGKIEFTSWPGH--TEFSVYL 345 (348)
T ss_pred ------------CCC-CCccCCHHHHHHHHHHcCCeEEEEecCCc--eEEEEEE
Confidence 001 123777753 33457888999887543 4444443
No 68
>PRK09835 sensor kinase CusS; Provisional
Probab=94.19 E-value=0.25 Score=60.12 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhh-cccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~k-wGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+..++..||+||+.+.. ....|.|++..+.+ .|.|.|||.||+++++..+.. |....
T Consensus 375 ~l~~vl~nll~Na~~~~~---~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~---------------- 435 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP---AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD---------------- 435 (482)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC----------------
Confidence 478899999999999841 22357777766443 588999999999999875211 11000
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEee
Q 000366 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKT 266 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~ 266 (1612)
+......+-.|+|+..+ .-.+|..+++.|..
T Consensus 436 ~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 436 PSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC
Confidence 00011123458887542 33477889998864
No 69
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=94.15 E-value=0.26 Score=60.78 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=61.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++.+|++||++|.... ....|.|++...++ .|.|.|||.||+++++..+..- +.+
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~-~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~---~~~--------------- 493 (542)
T PRK11086 433 ELITILGNLIENALEAVGGE-EGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK---GYS--------------- 493 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcC-CCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC---CCc---------------
Confidence 36788999999999995322 34457777766544 4889999999999998752110 100
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.+. +-.|+|++. -.-..|..+.+.|... ....+++.+.
T Consensus 494 --~~~-~g~GlGL~iv~~iv~~~~G~i~v~s~~~-~G~~f~i~lP 534 (542)
T PRK11086 494 --TKG-SNRGVGLYLVKQSVENLGGSIAVESEPG-VGTQFFVQIP 534 (542)
T ss_pred --cCC-CCCcCcHHHHHHHHHHcCCEEEEEeCCC-CcEEEEEEEe
Confidence 011 123788764 2234778889988753 3344555554
No 70
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.04 E-value=0.25 Score=49.92 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=55.1
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
..+.-|+.|++-||+...........|.|.+....+ .|.|.|+|.|+++..+.....+
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~-------------------- 89 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPW-------------------- 89 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccc--------------------
Confidence 368899999999999996443223567777666544 5889999999999876430000
Q ss_pred CCCCCCccccccchhhhhhcccCEEEE
Q 000366 236 PYLTPFFGMFGYGGPIASMHLGRRALV 262 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~ASfsLGrrVtV 262 (1612)
.......-|.|+.+ .-.+++++.+
T Consensus 90 --~~~~~~~~G~Gl~l-i~~l~D~~~~ 113 (125)
T PF13581_consen 90 --EPDSLREGGRGLFL-IRSLMDEVDY 113 (125)
T ss_pred --cCCCCCCCCcCHHH-HHHHHcEEEE
Confidence 00233344667665 5578899988
No 71
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.03 E-value=0.26 Score=52.96 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecC--CeEEEEECCCCCChHhHh
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDEN 210 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~--~sItV~DNG~GMs~dEL~ 210 (1612)
..+..|+.|++-||+.....+.....|.|.+.... -.|.|.|+|.||+++.+.
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~ 95 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLK 95 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhc
Confidence 35789999999999999644432345677776654 458899999999988764
No 72
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.00 E-value=0.2 Score=66.86 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecC---CeEEEEECCCCCChHhHhhhh-hcccccccccccccccccCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE---DKISVFDTGPGMDSTDENSIV-KWGKMGASLHRASKAQGIGG 233 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~---~sItV~DNG~GMs~dEL~~~~-kwGtiG~S~~R~~~a~~~Gg 233 (1612)
..+..+|..||+||+.+. ....|.|.+.... -.|.|.|||.||+++++..+. .|.. +.
T Consensus 578 ~~l~~il~nLi~NAik~~----~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~--------------~~ 639 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT----DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQ--------------AD 639 (968)
T ss_pred HHHHHHHHHHHHHHHhhC----CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhc--------------cC
Confidence 357789999999999995 3345677776543 359999999999999987631 1110 00
Q ss_pred CCCCCCCCccccccchhhh---hhcccCEEEEEEeeC
Q 000366 234 KPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTK 267 (1612)
Q Consensus 234 k~~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~ 267 (1612)
.....|-.|+|+..+ +-.+|..+.|.|...
T Consensus 640 ----~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 640 ----GRRRSGGTGLGLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred ----CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCC
Confidence 011223457787642 334778899988764
No 73
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.94 E-value=0.15 Score=64.08 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=36.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChH
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~d 207 (1612)
.+..++.|+++||+.+. ++.+|.|++..+++ .|+|.|||.||+++
T Consensus 410 ~L~ril~nlL~NAiKha----~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA----DASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46678999999999984 55677887776655 48899999999865
No 74
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.81 E-value=0.2 Score=60.06 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=60.7
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
..++-++.|.+-|++-. ++|+.+.|.+...++ .+.|.|||.|-+.+..
T Consensus 278 ~~l~rivQEaltN~~rH----a~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~-------------------------- 327 (365)
T COG4585 278 DALFRIVQEALTNAIRH----AQATEVRVTLERTDDELRLEVIDNGVGFDPDKE-------------------------- 327 (365)
T ss_pred HHHHHHHHHHHHHHHhc----cCCceEEEEEEEcCCEEEEEEEECCcCCCcccc--------------------------
Confidence 45777888999998887 589999999988655 4789999999997742
Q ss_pred CCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEE
Q 000366 236 PYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTL 275 (1612)
Q Consensus 236 ~~~~~~IGrFGV-GlK~ASfsLGrrVtV~SK~~gs~~v~~l 275 (1612)
. |-||+ |++-=+-.+|..++|.|.. |.....++
T Consensus 328 -----~-~~~GL~~mreRv~~lgG~l~i~S~~-g~Gt~i~i 361 (365)
T COG4585 328 -----G-GGFGLLGMRERVEALGGTLTIDSAP-GQGTTVTI 361 (365)
T ss_pred -----C-CCcchhhHHHHHHHcCCEEEEEecC-CCceEEEE
Confidence 1 44566 6666677899999999998 44333333
No 75
>PRK03660 anti-sigma F factor; Provisional
Probab=93.72 E-value=0.47 Score=49.24 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCCh
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDS 206 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~ 206 (1612)
..+..|+.|++.||+...........|.|.+....+ .|.|.|+|.||+.
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 38 TEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 467899999999999764333222457777766544 4889999999985
No 76
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.67 E-value=0.3 Score=64.98 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=61.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+..++..|++||+.+. ....|.|.+..++. .|.|.|||.||+++++..+..-.. + .
T Consensus 561 ~l~qil~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------~-------~---- 619 (914)
T PRK11466 561 RIRQVITNLLSNALRFT----DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFV------Q-------V---- 619 (914)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhh------c-------C----
Confidence 46789999999999995 34457777766543 488999999999999876211000 0 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
....|-.|+|+..+ +-.+|..++|.|...+ ...+.+.+.
T Consensus 620 --~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~-Gt~f~i~lP 661 (914)
T PRK11466 620 --SGKRGGTGLGLTISSRLAQAMGGELSATSTPEV-GSCFCLRLP 661 (914)
T ss_pred --CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCC-CeEEEEEEE
Confidence 01123458887642 2347888999988643 233444443
No 77
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=93.52 E-value=0.29 Score=62.07 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhh
Q 000366 154 LPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 154 lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~ 211 (1612)
.+....+++.|--||.||+||.... ...+|+|+..-+++ .|+|.|||.|+.++-+..
T Consensus 492 ~~~~iRLeQVLvNLl~NALDA~~~~-~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~ 550 (603)
T COG4191 492 MANEIRLEQVLVNLLQNALDAMAGQ-EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPH 550 (603)
T ss_pred ecchhhHHHHHHHHHHHHHHHhcCC-CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHh
Confidence 3445689999999999999997553 45677787776544 488999999999998865
No 78
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=93.44 E-value=0.37 Score=64.06 Aligned_cols=95 Identities=24% Similarity=0.146 Sum_probs=61.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec---------------CC--eEEEEECCCCCChHhHhhhhhccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA---------------ED--KISVFDTGPGMDSTDENSIVKWGKMGAS 221 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d---------------~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S 221 (1612)
.+..++..||+||+++.. ....|.|.+... ++ .|.|.|||.||+++++..+.... .
T Consensus 560 ~L~qvl~NLl~NAik~~~---~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F---~- 632 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD---GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPF---F- 632 (828)
T ss_pred HHHHHHHHHHHHHHHHcc---cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCc---c-
Confidence 478999999999999852 234566666543 22 48899999999999987521100 0
Q ss_pred ccccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 222 LHRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 222 ~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
. ... +-.|+|+.. -.-.+|..+.|.|.. +....+.+.+.
T Consensus 633 ------------~----~~~-~G~GLGL~i~~~iv~~~gG~i~v~s~~-g~Gt~f~i~LP 674 (828)
T PRK13837 633 ------------T----TRA-GGTGLGLATVHGIVSAHAGYIDVQSTV-GRGTRFDVYLP 674 (828)
T ss_pred ------------c----CCC-CCCcchHHHHHHHHHHCCCEEEEEecC-CCeEEEEEEEe
Confidence 0 001 445788764 233478899999875 33344555554
No 79
>PRK10490 sensor protein KdpD; Provisional
Probab=93.32 E-value=0.4 Score=64.49 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=61.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
-+..++..||+||+.+. .....|.|++..+++ .|.|.|||.||+++++..+..-. ++ +..
T Consensus 778 ~L~qVL~NLL~NAik~s---~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF---~~----------~~~-- 839 (895)
T PRK10490 778 LFERVLINLLENAVKYA---GAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF---AR----------GNK-- 839 (895)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC---cc----------CCC--
Confidence 47899999999999994 123457777766544 48899999999999987521110 00 000
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
....+-.|+|+..+ .-..|..+.+.|...+ ...+++.+.
T Consensus 840 --~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~-Gt~f~i~LP 881 (895)
T PRK10490 840 --ESAIPGVGLGLAICRAIVEVHGGTIWAENRPEG-GACFRVTLP 881 (895)
T ss_pred --CCCCCCccHHHHHHHHHHHHcCCEEEEEECCCC-eEEEEEEeE
Confidence 01112357777641 2237888999887643 344555444
No 80
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.31 E-value=0.4 Score=64.52 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=60.9
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecC-----CeEEEEECCCCCChHhHhhhhhcccccccccccccccccCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE-----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~-----~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Gg 233 (1612)
.+..++.-||.||+.++ ....|.|.+.... -.|.|.|||.||+++++..+..- .. +.
T Consensus 565 ~L~QVL~NLL~NAik~t----~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFeP-F~-----t~-------- 626 (894)
T PRK10618 565 ALRKILLLLLNYAITTT----AYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFP-FL-----NQ-------- 626 (894)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCc-cc-----cC--------
Confidence 57889999999999995 2345677776531 25889999999999999763110 00 00
Q ss_pred CCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 234 KPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 234 k~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
+ ...+.. +--|+|+.+ -+-.+|..++|.|... ....+.+.+.
T Consensus 627 ~-~~~~~~-~GtGLGLaI~k~Lve~~GG~I~v~S~~g-~GT~F~I~LP 671 (894)
T PRK10618 627 T-QGDRYG-KASGLTFFLCNQLCRKLGGHLTIKSREG-LGTRYSIHLK 671 (894)
T ss_pred C-CCCCCC-CCcChhHHHHHHHHHHcCCEEEEEECCC-CcEEEEEEEE
Confidence 0 000111 124777654 1234789999999863 3334555554
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=92.70 E-value=0.43 Score=63.23 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=55.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEe--c-C----CeEEEEECCCCCChHhHhhhhh-cccccccccccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI--A-E----DKISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQG 230 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~--d-~----~sItV~DNG~GMs~dEL~~~~k-wGtiG~S~~R~~~a~~ 230 (1612)
.+..+|..||+||+.++ ....|.|.+.. . . -.|.|.|||.||+++++..+.. |. |
T Consensus 408 ~l~~vl~NLl~NAik~~----~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-------~------ 470 (919)
T PRK11107 408 RLQQIITNLVGNAIKFT----ESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFR-------Q------ 470 (919)
T ss_pred HHHHHHHHHHHHHhhcC----CCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhc-------c------
Confidence 36789999999999995 23345555543 1 1 2488999999999999875211 10 0
Q ss_pred cCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeC
Q 000366 231 IGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTK 267 (1612)
Q Consensus 231 ~Ggk~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~ 267 (1612)
+.. ......|-.|+|+.. -+-.+|..++|.|...
T Consensus 471 -~~~--~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 471 -ADA--SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred -CCC--CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCC
Confidence 000 001123456888764 2234788899998864
No 82
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=0.13 Score=67.07 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEe-----cC--CeEEE-----EECCCCCChHhHhhhhhccccccccc
Q 000366 156 EDYTFETALADLIDNSLQAVWTNAKNERRLISVNI-----AE--DKISV-----FDTGPGMDSTDENSIVKWGKMGASLH 223 (1612)
Q Consensus 156 ~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~-----d~--~sItV-----~DNG~GMs~dEL~~~~kwGtiG~S~~ 223 (1612)
+.-....|+|||+|||+|-... +++- +.++. +. ...+| .|||.||.++-+..-| .+|++.+
T Consensus 143 shk~a~~a~aeLldnalDEi~~--~~tf--~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m---~l~~~~k 215 (775)
T KOG1845|consen 143 SHKWAKGAIAELLDNALDEITN--GATF--VRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCM---SLGYSSK 215 (775)
T ss_pred ccccccChhhhhcccccccccc--ccce--EEeeeecccccccceeEEeeccceeccccccCHHHHHHHH---Hhhhhhh
Confidence 3557788999999999999532 2332 22221 21 22333 5889999999886422 2233322
Q ss_pred ccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee
Q 000366 224 RASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1612)
Q Consensus 224 R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~ 266 (1612)
+ .....+|+||.|++...+.+|..+.+.+|.
T Consensus 216 ~------------e~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 216 K------------EANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred h------------hhhhhhhhhccccccchhhhccceeEeehh
Confidence 1 225689999999999999999999999995
No 83
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.30 E-value=0.99 Score=48.67 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=56.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+.-|+.|++-||+...........|.|.+....+ .|.|.|+|.|++++.+.. .++... ... +
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~--~~~~~~------------~~~-~ 106 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ--SLGPYD------------GSE-P 106 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc--ccCCCC------------CCC-C
Confidence 58899999999999996443333567777766544 477999999999887643 111100 000 0
Q ss_pred CCCCCccccccchhhhhhcccCEEEEEE
Q 000366 237 YLTPFFGMFGYGGPIASMHLGRRALVSS 264 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK~ASfsLGrrVtV~S 264 (1612)
......-|.|+.+ .=.+.+.+.+.+
T Consensus 107 --~~~~~~~G~GL~L-i~~L~D~v~~~~ 131 (159)
T TIGR01924 107 --IDDLREGGLGLFL-IETLMDEVEVYE 131 (159)
T ss_pred --cccCCCCccCHHH-HHHhccEEEEEe
Confidence 0112223788876 447888888876
No 84
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=92.04 E-value=0.65 Score=60.95 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=61.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec-CC--eEEEEECCCCCChHhHhhhhh-cccccccccccccccccCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGK 234 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~~--sItV~DNG~GMs~dEL~~~~k-wGtiG~S~~R~~~a~~~Ggk 234 (1612)
.+..++..|++||+++. ....|.|.+... ++ .|+|.|||.||+.+++..+.. |.+. + +
T Consensus 398 ~l~qvl~NLl~NAik~~----~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~----~---~------- 459 (779)
T PRK11091 398 RLRQILWNLISNAVKFT----QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV----K---D------- 459 (779)
T ss_pred HHHHHHHHHHHHHHHhC----CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc----c---C-------
Confidence 47899999999999995 334566777654 33 588999999999999876311 1110 0 0
Q ss_pred CCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 235 PPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 235 ~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.......+--|+|+.. -.-.+|..+.|.|... ....+.+.+.
T Consensus 460 -~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~lP 504 (779)
T PRK11091 460 -SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG-KGSCFTLTIH 504 (779)
T ss_pred -CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCC-CeEEEEEEEe
Confidence 0001112334777653 1223788999998863 3344455554
No 85
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=91.96 E-value=0.74 Score=62.24 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=61.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhhhhh-cccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~~~k-wGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+..+|..||+||+.++ ....|.|.+..++. .|+|.|||.||+++++..+.. |...+ ..
T Consensus 562 ~L~qvl~NLl~NAik~t----~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~-------------~~- 623 (924)
T PRK10841 562 RLQQVISNLLSNAIKFT----DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG-------------TG- 623 (924)
T ss_pred HHHHHHHHHHHHHHhhC----CCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC-------------CC-
Confidence 47789999999999995 33456676666544 588999999999999876311 11000 00
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.....+-.|+|+..+ +-.+|..++|.|... ....+++.+.
T Consensus 624 --~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g-~Gt~F~i~LP 666 (924)
T PRK10841 624 --VQRNFQGTGLGLAICEKLINMMDGDISVDSEPG-MGSQFTIRIP 666 (924)
T ss_pred --CCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCC-CcEEEEEEEE
Confidence 001122347887652 234788899998763 3334444444
No 86
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.26 E-value=0.51 Score=59.81 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChH
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~d 207 (1612)
+..++.|+|.||+.+. .+..|.|.+..+++ .|+|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha----~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHA----QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 6788999999999983 56677888776544 48899999999875
No 87
>PRK10547 chemotaxis protein CheA; Provisional
Probab=90.90 E-value=1.3 Score=57.98 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=57.2
Q ss_pred HHHHHhhcchhhcccCC---------CceEEEEEEEecCC--eEEEEECCCCCChHhHhh-hhhcccccc---cccc-cc
Q 000366 163 ALADLIDNSLQAVWTNA---------KNERRLISVNIAED--KISVFDTGPGMDSTDENS-IVKWGKMGA---SLHR-AS 226 (1612)
Q Consensus 163 ALAELVDNSIDA~~~Na---------~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~-~~kwGtiG~---S~~R-~~ 226 (1612)
.|..||.||+|+....+ ....|.|+....++ .|.|.|||.||+++.+.. +..-|.+.. +... ..
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~ 468 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGM 468 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHH
Confidence 35689999999964321 12346777666544 488999999999998753 222222211 0000 00
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEee
Q 000366 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKT 266 (1612)
Q Consensus 227 ~a~~~Ggk~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~ 266 (1612)
..+..|-++.......+-.|+|+.. ..-.++..++|.|..
T Consensus 469 lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 469 LIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 0011111111111223445999853 344588999999986
No 88
>PRK13560 hypothetical protein; Provisional
Probab=90.85 E-value=0.68 Score=59.92 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEec-CC--eEEEEECCCCCChH
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~~--sItV~DNG~GMs~d 207 (1612)
....|.+|+.||+.+.........|.|.+... ++ .|+|.|||+||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 34578899999999853332344667766654 33 48899999999976
No 89
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=90.28 E-value=1.1 Score=44.01 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=44.6
Q ss_pred eEeecCCcccccCCCcccceEEEEecccCCCCCCcceEEEEeec-eeeeccCCcceecCCCccccc
Q 000366 1019 VAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDG-FCIEDQLGLRRKVDGYGCIDL 1083 (1612)
Q Consensus 1019 L~l~P~~~e~li~g~~~~~f~vqv~D~wgN~s~~g~~V~i~~~g-l~~~~~~~~~~kv~~~G~a~l 1083 (1612)
+.|.|+-...+.+|.-..-+.++|.|+.|||++. ..|.+.++| -.+... +....+|++|+|.+
T Consensus 3 i~l~~~~~~~~Adg~d~~~i~v~v~D~~Gnpv~~-~~V~f~~~~~~~~~~~-~~~~~Td~~G~a~~ 66 (92)
T smart00634 3 TTLTADKDTAVANGSDAITLTATVTDANGNPVAG-QEVTFTTPSGGALTLS-KGTATTDANGIATV 66 (92)
T ss_pred EEEEeCCCcEEEcCcccEEEEEEEECCCCCCcCC-CEEEEEECCCceeecc-CCeeeeCCCCEEEE
Confidence 3444443345677778889999999999999977 668888872 122222 45778999999843
No 90
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=90.27 E-value=1.1 Score=61.60 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=58.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEe---cC----CeEEEEECCCCCChHhHhhhhhccccccccccccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI---AE----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~---d~----~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~ 231 (1612)
.+..++..||+||+++.. ...+.|.+.. +. -.|.|.|||.||+++++..+..-.. +
T Consensus 828 ~l~qvl~NLl~NAik~~~----~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~------~------- 890 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTT----EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS------Q------- 890 (1197)
T ss_pred HHHHHHHHHHHHHHHhCC----CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc------c-------
Confidence 578999999999999952 2223444322 22 2478999999999999876311000 0
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 232 Ggk~~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
+ .... ..+-.|+|+.++ +-.+|..+++.|...+ ...+++.+.
T Consensus 891 ~---~~~~-~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~-Gt~f~i~lP 935 (1197)
T PRK09959 891 T---SAGR-QQTGSGLGLMICKELIKNMQGDLSLESHPGI-GTTFTITIP 935 (1197)
T ss_pred c---ccCC-CCCCcCchHHHHHHHHHHcCCEEEEEeCCCC-cEEEEEEEE
Confidence 0 0001 122358888652 3347889999998642 334445444
No 91
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.93 E-value=3.5 Score=56.21 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=19.6
Q ss_pred CCceeeecccccccCchHHHHHHHHhccccccEEEE
Q 000366 1351 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVC 1386 (1612)
Q Consensus 1351 ~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~ 1386 (1612)
.|+.|.|+.+..|+. .+ ..++|. .+..|++
T Consensus 502 ~~~~~~v~~~i~v~~-~~----~~~~g~-~~~li~~ 531 (1179)
T TIGR02168 502 EGFSEGVKALLKNQS-GL----SGILGV-LSELISV 531 (1179)
T ss_pred ccchhHHHHHHhccc-cc----CCCccc-hhceeee
Confidence 468889999999963 43 235564 4555555
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.39 E-value=1.9 Score=56.85 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=39.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChHhHhh
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~ 211 (1612)
=++.+|.-|+|||+-.. +...+|.|....+.. .+.|+|||.|++.++++.
T Consensus 775 LieQVLiNLleNA~Kya---p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~ 826 (890)
T COG2205 775 LIEQVLINLLENALKYA---PPGSEIRINAGVERENVVFSVIDEGPGIPEGELER 826 (890)
T ss_pred HHHHHHHHHHHHHHhhC---CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHH
Confidence 37899999999999984 334556666666544 477999999999999986
No 93
>PRK13557 histidine kinase; Provisional
Probab=89.36 E-value=2 Score=52.92 Aligned_cols=97 Identities=20% Similarity=0.076 Sum_probs=58.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEe---------------cCC--eEEEEECCCCCChHhHhhhhhccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI---------------AED--KISVFDTGPGMDSTDENSIVKWGKMGAS 221 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~---------------d~~--sItV~DNG~GMs~dEL~~~~kwGtiG~S 221 (1612)
.+..++..|+.||++|... ...|.|.... .+. .|+|.|||.||+++.+.. +....++
T Consensus 277 ~l~~vl~nll~NA~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~---if~~~~~ 350 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE---GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILAR---VMDPFFT 350 (540)
T ss_pred HHHHHHHHHHHHHHHhccc---CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHh---ccCCCcc
Confidence 3678899999999999522 2335554432 112 589999999999998865 1111111
Q ss_pred ccccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 222 LHRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 222 ~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~---ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
. ....+-.|+|+.. ..-.+|..+.+.|... ....+++.+.
T Consensus 351 ~----------------~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~-~G~~f~i~lP 393 (540)
T PRK13557 351 T----------------KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVG-EGTTVRLYFP 393 (540)
T ss_pred c----------------CCCCCCCCccHHHHHHHHHHCCCEEEEEecCC-CceEEEEEee
Confidence 0 0111234777653 2334788999998763 3334455554
No 94
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=88.41 E-value=1.4 Score=55.06 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=38.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCc-eEEEEEEEecCC--eEEEEECCCCCChHhHhh
Q 000366 159 TFETALADLIDNSLQAVWTNAKN-ERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A-~~I~I~I~~d~~--sItV~DNG~GMs~dEL~~ 211 (1612)
.|.-.|-=|||||+.|....... -.|.|.+..... .++|.|||.||+...+..
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 57788889999999997555222 245555544444 477999999999998764
No 95
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.92 E-value=2.3 Score=56.11 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=73.3
Q ss_pred HHHHHHHhhcchhhcccCC---------CceEEEEEEEecCCe--EEEEECCCCCChHhHhh-hhhccccccccc-ccc-
Q 000366 161 ETALADLIDNSLQAVWTNA---------KNERRLISVNIAEDK--ISVFDTGPGMDSTDENS-IVKWGKMGASLH-RAS- 226 (1612)
Q Consensus 161 ~sALAELVDNSIDA~~~Na---------~A~~I~I~I~~d~~s--ItV~DNG~GMs~dEL~~-~~kwGtiG~S~~-R~~- 226 (1612)
..-|.=||-||+|....-+ ..-+|.++-.-.++. |.|.|||.||+++-+.. ++.=|.+..... +..
T Consensus 434 ~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd 513 (716)
T COG0643 434 GDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSD 513 (716)
T ss_pred cccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCH
Confidence 3445558999999975532 123466655555444 77999999999999964 444444432211 111
Q ss_pred -----cccccCCCCCCCCCCccccccchh---hhhhcccCEEEEEEeeC-CCceEEEEEEeh
Q 000366 227 -----KAQGIGGKPPYLTPFFGMFGYGGP---IASMHLGRRALVSSKTK-VSKEVYTLHLEK 279 (1612)
Q Consensus 227 -----~a~~~Ggk~~~~~~~IGrFGVGlK---~ASfsLGrrVtV~SK~~-gs~~v~~l~LD~ 279 (1612)
--+..|-++......++=.||||= ...-.+|..+.|.|+.- |.....++.+..
T Consensus 514 ~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 514 EEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred HHHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 123344444444556666699984 56677999999999973 344444444444
No 96
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=86.96 E-value=1.8 Score=52.77 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=65.5
Q ss_pred CHHHHHHHHhhcchhhcccCCC-----ceEEEEEEEe--cCCeEEEEECCCCCChHhHhhhhhccccccccccccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAK-----NERRLISVNI--AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~-----A~~I~I~I~~--d~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~ 231 (1612)
.+..++-||..||..|+..... -..|.|.|.. +.-.|.|.|-|.|++.++++.+.+|+..-+ +... .
T Consensus 260 hL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa---~~~~---~ 333 (414)
T KOG0787|consen 260 HLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTA---PAPS---S 333 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccC---CCCC---C
Confidence 5889999999999999876421 2235555554 345688999999999999987666654322 2111 0
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeC
Q 000366 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTK 267 (1612)
Q Consensus 232 Ggk~~~~~~~IGrFGVGlK~A---SfsLGrrVtV~SK~~ 267 (1612)
. +.....+--||+|+.++ +=+.|-.+.+.|-..
T Consensus 334 d---~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG 369 (414)
T KOG0787|consen 334 D---NNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEG 369 (414)
T ss_pred C---CCCcCcccccccCCcHHHHHHHHhCCCeeEEeeec
Confidence 0 11123455678888753 334677778888764
No 97
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.90 E-value=5.4 Score=42.97 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred CCHHHHHHHHhhcchhhcccCCCc-eEEEEEEEec--CCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCC
Q 000366 158 YTFETALADLIDNSLQAVWTNAKN-ERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A-~~I~I~I~~d--~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk 234 (1612)
+.+..|+.|++.|++.+.-++... ..|.|.+..+ +-.|+|+|.|.|+..-+... .- +
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~~~~~--~~----------------~-- 98 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDLEESL--GP----------------G-- 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCHHHhc--CC----------------C--
Confidence 478899999999999996554222 5667776664 45688999997766554421 11 1
Q ss_pred CCCCCCCccccccchhhhhhcccCEEEEEEeeCCC
Q 000366 235 PPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS 269 (1612)
Q Consensus 235 ~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs 269 (1612)
....+.+-.-|+|+.+ +-++.+.+++.....+.
T Consensus 99 -~~~~~~~~~~G~Gl~l-~~~~~D~~~~~~~~~~~ 131 (146)
T COG2172 99 -DTTAEGLQEGGLGLFL-AKRLMDEFSYERSEDGR 131 (146)
T ss_pred -CCCCcccccccccHHH-HhhhheeEEEEeccCCc
Confidence 1112233333555543 44677888888655443
No 98
>PRK13559 hypothetical protein; Provisional
Probab=84.15 E-value=2 Score=50.80 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEE--ecC--CeEEEEECCCCCChH
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVN--IAE--DKISVFDTGPGMDST 207 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~--~d~--~sItV~DNG~GMs~d 207 (1612)
+..++-||+.||+.+........+|.|.+. ..+ -.|.|.|||.||+++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 567899999999998433334457777773 233 357789999998754
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=83.22 E-value=0.73 Score=60.46 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=46.0
Q ss_pred EEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000366 195 ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1612)
Q Consensus 195 ItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~ 270 (1612)
++..|||.||+++++..+..|+. ....+|.||-|+|..++.+|+.+.+.|+..+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f~~--------------------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~ 57 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINFAV--------------------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTM 57 (775)
T ss_pred cccccCCCCcCchhhhhhhhhcc--------------------cccccccccCcccccccccCcccceeecccccc
Confidence 46789999999999987555421 134799999999999999999999999986544
No 100
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.12 E-value=1.7 Score=49.58 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=38.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC----eEEEEECCCCCChH
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED----KISVFDTGPGMDST 207 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~----sItV~DNG~GMs~d 207 (1612)
++--++-||+-||+....-..+..+|.|.+..+.+ .++|+|||.|++.+
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 56678999999999996555456678888877433 69999999999865
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.76 E-value=2.6 Score=59.59 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=42.5
Q ss_pred CCCCceeeeccccc-ccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhh
Q 000366 1349 FMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1399 (1612)
Q Consensus 1349 ~~~gV~GvVa~L~~-V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl 1399 (1612)
.++||+ |++|.. |+ .+++.+++.++|+ .+..||++|.+.|+..+.+|
T Consensus 681 ~~~Gvl--vsel~~~v~-~~~~~~~~A~lg~-~~~~iVv~d~~~A~~ai~~L 728 (1486)
T PRK04863 681 RFGGVL--LSEIYDDVS-LEDAPYFSALYGP-ARHAIVVPDLSDAAEQLAGL 728 (1486)
T ss_pred hcCCee--hhHhhhccC-cchHHHHHHHHHh-hhCeEEeCCHHHHHHHHHhc
Confidence 478999 999999 85 7999999999999 69999999999999998888
No 102
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=78.47 E-value=6 Score=39.76 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=42.8
Q ss_pred cccCCCcccceEEEEecccCCCCCCcceEEE--EeeceeeeccCCcceecCCCccccc------cceEEEEeecC
Q 000366 1028 ILLPGSVIKMLKLEMFDAFYNNVKKGLEVEL--NVDGFCIEDQLGLRRKVDGYGCIDL------SGLLKVKAGYG 1094 (1612)
Q Consensus 1028 ~li~g~~~~~f~vqv~D~wgN~s~~g~~V~i--~~~gl~~~~~~~~~~kv~~~G~a~l------~g~l~v~a~y~ 1094 (1612)
.+.+|...-.+.+.|.|++|||++ |..|.+ ...+-.+.+. +....+|++|.|.+ -|...|+|.++
T Consensus 17 ~~a~g~~~~tltatV~D~~gnpv~-g~~V~f~~~~~~~~l~~~-~~~~~Td~~G~a~~tltst~aG~~~VtA~~~ 89 (100)
T PF02369_consen 17 AVADGSDTNTLTATVTDANGNPVP-GQPVTFSSSSSGGTLSPT-NTSATTDSNGIATVTLTSTKAGTYTVTATVD 89 (100)
T ss_dssp EESSSSS-EEEEEEEEETTSEB-T-S-EEEE--EESSSEES-C-EE-EEE-TTSEEEEEEE-SS-EEEEEEEEET
T ss_pred eEeCCcCcEEEEEEEEcCCCCCCC-CCEEEEEEcCCCcEEecC-ccccEECCCEEEEEEEEecCceEEEEEEEEC
Confidence 346677777899999999999996 488888 3446666644 33689999999933 33667777666
No 103
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=77.14 E-value=5.8 Score=50.39 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=54.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec--CCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d--~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~ 236 (1612)
.+-.-++|-+-|++-. +.|++|.|.+... .-+++|.|||+|++..+-
T Consensus 481 HlLqIvREAlsNa~KH----a~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e--------------------------- 529 (574)
T COG3850 481 HLLQIVREALSNAIKH----AQASEIKVTVSQNDGQVTLTVEDNGVGIDEAAE--------------------------- 529 (574)
T ss_pred HHHHHHHHHHHHHHHh----cccCeEEEEEEecCCeEEEEEeeCCcCCCCccC---------------------------
Confidence 4556788888888877 5889988888775 346899999999997732
Q ss_pred CCCCCccccccchh-hhhhcccCEEEEEEeeCCCce
Q 000366 237 YLTPFFGMFGYGGP-IASMHLGRRALVSSKTKVSKE 271 (1612)
Q Consensus 237 ~~~~~IGrFGVGlK-~ASfsLGrrVtV~SK~~gs~~ 271 (1612)
..|.||+=.= =-+-+++..++|..+..|...
T Consensus 530 ----~~gHyGL~IM~ERA~~L~~~L~i~~~~~gGT~ 561 (574)
T COG3850 530 ----PSGHYGLNIMRERAQRLGGQLRIRRREGGGTE 561 (574)
T ss_pred ----CCCCcchHHHHHHHHHhcCeEEEeecCCCCeE
Confidence 2234444110 124478888999998876553
No 104
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.90 E-value=7.2 Score=47.03 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEec--CCeEEEEECCCCCChHhHhhhhhcccccccccccccccccCCCCCC
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d--~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~~~a~~~Ggk~~~ 237 (1612)
..+|+--.++.|+...-++++|++|.|.+.-. .-.++|.|||.|.+..++..
T Consensus 356 ~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~-------------------------- 409 (459)
T COG4564 356 VATALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ-------------------------- 409 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhcc--------------------------
Confidence 56788888888888777778999999988764 44688999999999988753
Q ss_pred CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000366 238 LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 238 ~~~~IGrFGVGlK~ASfsLGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
.+.+||-.-|-. -.-.+|..++|.|-+.|-+-...+.++
T Consensus 410 ~~~GiGLRNMrE--Rma~~GG~~~v~s~p~GTel~v~Lp~~ 448 (459)
T COG4564 410 KRHGIGLRNMRE--RMAHFGGELEVESSPQGTELTVLLPLD 448 (459)
T ss_pred CccccccccHHH--HHHHhCceEEEEecCCCcEEEEEecch
Confidence 012333333322 233578999999999876655545444
No 105
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=74.77 E-value=3.9 Score=51.36 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEec-CC--eEEEEECCCCCChH
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~d-~~--sItV~DNG~GMs~d 207 (1612)
+...+.+++.||+.+. .+..|.|.+... .+ .|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~----~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA----NASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC----CCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 5678999999999973 455677777654 33 48899999999864
No 106
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.00 E-value=48 Score=45.24 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=38.2
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHH
Q 000366 1349 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAF 1393 (1612)
Q Consensus 1349 ~~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak 1393 (1612)
+=..|+|.+.-=..|.+.++|.+|+.++|-+...+.||.+++.-.
T Consensus 446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~ 490 (1072)
T KOG0979|consen 446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYL 490 (1072)
T ss_pred hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHH
Confidence 558899996555667789999999999999999999999998433
No 107
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=70.13 E-value=10 Score=46.40 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=34.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEecCC--eEEEEECCCCCChH
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~--sItV~DNG~GMs~d 207 (1612)
+++.-.-|+..|=... ++|+.|+|.+..++. .+.|.|||.|.++.
T Consensus 410 TLyRl~QE~LNNI~KH----A~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKH----ADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhc----cccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 5666667777776655 589999999888655 57899999999876
No 108
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=52.68 E-value=17 Score=43.79 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=56.8
Q ss_pred CHHHHHHHHhhcchhhcccCCC--c-----eEEEEEEEec------CCeEEEEECCCCCChHhHhhhhhccccccccccc
Q 000366 159 TFETALADLIDNSLQAVWTNAK--N-----ERRLISVNIA------EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRA 225 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~--A-----~~I~I~I~~d------~~sItV~DNG~GMs~dEL~~~~kwGtiG~S~~R~ 225 (1612)
.+.+|+--||.||.+|...+++ . ++.-+.+.+. .-.|.|.|||.|++++-...+ |.-+-
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~l--F~P~V------ 312 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHL--FYPMV------ 312 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhc--ccccc------
Confidence 4779999999999999755432 1 2233333332 235889999999998866542 21110
Q ss_pred ccccccCCCCCCCCCCccccccchhhhhhc---ccCEEEEEEeeCCCceEEEEEEe
Q 000366 226 SKAQGIGGKPPYLTPFFGMFGYGGPIASMH---LGRRALVSSKTKVSKEVYTLHLE 278 (1612)
Q Consensus 226 ~~a~~~Ggk~~~~~~~IGrFGVGlK~ASfs---LGrrVtV~SK~~gs~~v~~l~LD 278 (1612)
...-|-=|.|+.+|.=- -+..++..|++. ..++++.+-
T Consensus 313 -------------s~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg--~T~FrvllP 353 (363)
T COG3852 313 -------------SGREGGTGLGLALAQNLIDQHGGKIEFDSWPG--RTVFRVLLP 353 (363)
T ss_pred -------------ccCCCCccccHHHHHHHHHhcCCEEEEeccCC--ceEEEEEee
Confidence 00111228888775533 345677777763 334454443
No 109
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=51.68 E-value=24 Score=45.84 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcchhhcccCC----CceEEEEEEEecCCe--EEEEECCCCCChHhHhh
Q 000366 160 FETALADLIDNSLQAVWTNA----KNERRLISVNIAEDK--ISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na----~A~~I~I~I~~d~~s--ItV~DNG~GMs~dEL~~ 211 (1612)
+.+|+--|++||.+|.-.+. ....|.++.+..++. +.|.|||.|.+.+++++
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r 658 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHR 658 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhh
Confidence 56899999999999964431 111344444443444 66999999999999876
No 110
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=51.67 E-value=35 Score=41.98 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCceEEEEEEEec--CCeEEEEECCCCCChHhHhhh-hhcccccccccccccccccCCCC
Q 000366 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSI-VKWGKMGASLHRASKAQGIGGKP 235 (1612)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d--~~sItV~DNG~GMs~dEL~~~-~kwGtiG~S~~R~~~a~~~Ggk~ 235 (1612)
.+.+.|--+|-||+-.. ++..+|+|.+... .-.|+|.|.|.|++.+++.++ -+|. |-.+|
T Consensus 342 K~tQVldNii~NA~KYs---P~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfy-------RvdkA------- 404 (459)
T COG5002 342 KMTQVLDNIISNALKYS---PDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFY-------RVDKA------- 404 (459)
T ss_pred HHHHHHHHHHHHHhhcC---CCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHh-------hhhhh-------
Confidence 46678888888888883 4456777777653 345899999999999999762 1221 11111
Q ss_pred CCCCCCccccccchhhhhh-c--ccCEEEEEEeeCCCceEEEEEEehh
Q 000366 236 PYLTPFFGMFGYGGPIASM-H--LGRRALVSSKTKVSKEVYTLHLEKE 280 (1612)
Q Consensus 236 ~~~~~~IGrFGVGlK~ASf-s--LGrrVtV~SK~~gs~~v~~l~LD~~ 280 (1612)
.....|-=|+|++.|-= - -|..+=..| ..|...++.+++..+
T Consensus 405 --RsR~~gGTGLGLaIakeiV~~hgG~iWA~s-~~gkgtt~~ftLPy~ 449 (459)
T COG5002 405 --RSRKMGGTGLGLAIAKEIVQAHGGRIWAES-EEGKGTTFSFTLPYS 449 (459)
T ss_pred --hhhcCCCCchhHHHHHHHHHHhCCeEEEec-ccCCceEEEEEeccc
Confidence 01134445888865321 1 223332233 346666667777653
No 111
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=47.52 E-value=17 Score=48.29 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=51.6
Q ss_pred ccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCeEEEEECCCCCChHhHh
Q 000366 139 ENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDEN 210 (1612)
Q Consensus 139 ~~~~dL~Pd~~~L~~lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~sItV~DNG~GMs~dEL~ 210 (1612)
+.+|-.+|..+-+..-+---.+....-|+++||.| ....++-..|.+.|+-+++.|+|.+||.|+.-+...
T Consensus 33 ~~~wv~~~e~~k~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~ 103 (842)
T KOG0355|consen 33 QLMWVYDMEKRKMVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHK 103 (842)
T ss_pred eEEeeeccccCceeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEccCCCEEEEEeCCCcceeeecc
Confidence 66676666666332222223578888999999999 444445566777778889999999999999877653
No 112
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=46.51 E-value=12 Score=32.48 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.5
Q ss_pred hh-hhcccceEEEEEEec
Q 000366 865 KL-FQNAGAYTFSFHLTE 881 (1612)
Q Consensus 865 ~~-f~~~G~Y~~~f~~~~ 881 (1612)
+| |.++|.|+++|+..+
T Consensus 6 nW~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 6 NWVFTKPGTYTLTVQATA 23 (41)
T ss_pred ceeeCCCeEEEEEEEEEE
Confidence 44 999999999998765
No 113
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=45.12 E-value=57 Score=42.84 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcchhhcccCCCceEEEEEEEe--cCCeEEEEECCCCCChHhHhh
Q 000366 160 FETALADLIDNSLQAVWTNAKNERRLISVNI--AEDKISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~~I~I~I~~--d~~sItV~DNG~GMs~dEL~~ 211 (1612)
+-....-||.||+-.... .+..|.|..+. +..++.|.|||.|+++.-+++
T Consensus 637 l~qv~~NLi~Naik~~~~--e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~r 688 (750)
T COG4251 637 LGQVFQNLIANAIKFGGP--ENPDIEISAERQEDEWTFSVRDNGIGIDPAYFER 688 (750)
T ss_pred HHHHHHHHHhhheecCCC--CCCceEEeeeccCCceEEEecCCCCCcCHHHHHH
Confidence 456677888899887411 24667777655 467899999999999998876
No 114
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=44.63 E-value=49 Score=36.50 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=66.0
Q ss_pred ccccCceEEEEEEEeCCceeccCceEEEecccccccccceeeeeeeeeeecC-cCCCCCCceEEEeeccccCCcCCceee
Q 000366 631 VISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEG-LQGDAGGEARIICRPLAVPDEKGCVLA 709 (1612)
Q Consensus 631 ~~~~~~~~~~~~i~~~~~~~~~Gq~Vk~~k~~~~g~~~~~~y~ti~~f~~~~-~~~~~gge~~i~~~P~~~~~~~~~~l~ 709 (1612)
|.+....+.|++++++|..|+.||-|-+.-+..+ .+-|.|..+..+. -+|...-.++--+||.++..... .
T Consensus 11 ~~~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~-----~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~---~ 82 (159)
T cd04715 11 GGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSE-----PYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELK---G 82 (159)
T ss_pred ccccCCceEEEEEEECCEEEeCCCEEEEeCCCCC-----CEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccc---c
Confidence 3344566899999999999999999999833223 5668999988542 12445566777788877632111 0
Q ss_pred ccC-CCCccccc------cccccccceecCCccccCChhhHH
Q 000366 710 VNN-GNASLHIG------SSLSLPIGVIDSEKCVPVNKNVWD 744 (1612)
Q Consensus 710 ~~~-~~~~~~~~------~~~~~pi~~id~~~~~~~~~~~~~ 744 (1612)
... ..--+.+. ..-.-||.-| .+||.+++-.+..
T Consensus 83 ~~~~~~nEvFlS~~~d~~~~~~n~l~sI-~gKC~Vl~~~ey~ 123 (159)
T cd04715 83 EPKRHINEVFLACGRGEGLANINLLESI-IGKCNVVCISEDF 123 (159)
T ss_pred CcccCCCcEEEecCcCccccccCcHHHc-cceeEEEEehHhh
Confidence 000 00111111 1234678888 8999988877665
No 115
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=39.94 E-value=1.4e+02 Score=30.10 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=56.4
Q ss_pred HHhcccccccCCHHHHHHHHHHhh---ccccccccccccccccCCCCCCC---CCCceeeecccccccCchHHHHHHHHh
Q 000366 1303 LQVSVEPYSLLTKEEIIRRIKSIY---QSAASVICCSTKEFLCSKPRSNF---MEDVVGPVALIGTVCTNKLSRTLAEYL 1376 (1612)
Q Consensus 1303 l~~~l~~~~~~~~E~~~k~i~~~~---~saa~i~~~l~~r~~~~~~~s~~---~~gV~GvVa~L~~V~d~~ls~als~~l 1376 (1612)
|...+......+.+...+-|+... ...+.++..-..+... ...+.. .++-.+....+..++|+++..++...+
T Consensus 26 LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~l~d~i~~~d~~~~~~~~~ll 104 (120)
T PF06470_consen 26 LGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRS-SASSADQIRPPGGAGPLIDLIEFPDEEYRPALEFLL 104 (120)
T ss_dssp HGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGT-TSCCCGGHHSTTSEEEGGGGEEESCGGGHHHHHHHH
T ss_pred HHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccc-cccchhhccCCcchHHHHHhcccCcHHHHHHHHHHc
Confidence 334444444667776666665442 2334444333332220 111111 457888889999997789999999888
Q ss_pred ccccccEEEEecHHHHHHH
Q 000366 1377 GEHQMLALVCRSFEAAFAL 1395 (1612)
Q Consensus 1377 g~~~m~~VV~~t~~~ak~l 1395 (1612)
|+ .+||+|.+.|++|
T Consensus 105 g~----~~vv~~l~~A~~l 119 (120)
T PF06470_consen 105 GD----VVVVDDLEEARKL 119 (120)
T ss_dssp TT----EEEESSHHHHHHH
T ss_pred CC----EEEECCHHHHHHh
Confidence 85 8999999999876
No 116
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.67 E-value=91 Score=43.40 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=33.5
Q ss_pred ecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcC
Q 000366 1357 VALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDG 1402 (1612)
Q Consensus 1357 Va~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~ 1402 (1612)
.-.|.+|.|+++..|+=-+|+ +.+||++.+.|.+|. |-+++
T Consensus 696 LfDLv~~~d~~~r~aFYfaLr----dtLV~d~LeQAtRia-ygk~r 736 (1293)
T KOG0996|consen 696 LFDLVKCKDEKFRPAFYFALR----DTLVADNLEQATRIA-YGKDR 736 (1293)
T ss_pred HhhhhccCCHHHHHHHHHHHh----hhhhhcCHHHHHHHh-hcCCC
Confidence 446889999999999966665 479999999999997 76555
No 117
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=39.49 E-value=55 Score=31.35 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=34.4
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc--cccccceeecccC
Q 000366 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH--DSMKRKRKINWNG 95 (1612)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv~~e~~~~~~~~--~~~~~~~~~~~~~ 95 (1612)
.+|.||||.++.+.++. +++++|++.-+=+-+.....++ -....+..++||.
T Consensus 3 ~~v~LP~~q~t~V~vrp---g~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRP---GMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-T---TSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcC---CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 36899999999999875 5999999988655555544344 1122567777863
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.10 E-value=52 Score=36.05 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=41.8
Q ss_pred HhHHHHHHHHhhccchhhHHHHHHHHHHH---------HHHHHHHHHHHHhcccccccC----CHHHHHHHH
Q 000366 1264 IVNELESEVRNYGLCIGRHEKALKLLNDQ---------KMEVEEVLSKLQVSVEPYSLL----TKEEIIRRI 1322 (1612)
Q Consensus 1264 ~~~k~q~~l~~lg~~i~~~e~~l~~L~~~---------k~~~~~~i~~l~~~l~~~~~~----~~E~~~k~i 1322 (1612)
....+++++..|..++++++.+|+.|.++ ..++++++..+..+|+++... +++++.+-.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 151 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLE 151 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 37888888888888888888888877655 667777777777777766432 455555444
No 119
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=38.90 E-value=45 Score=42.20 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHhhCCCCCCHHHHHHHHhhcchhhcccCCCceEEEEEEEec---CCeEEEEECCCCCChHhHhh
Q 000366 149 DLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENS 211 (1612)
Q Consensus 149 ~~L~~lg~~Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d---~~sItV~DNG~GMs~dEL~~ 211 (1612)
+.+.-+|...+++..+--|+-||+||...- +.-|.|.+.-+ .-.|.|.|||.|-+.+-+..
T Consensus 554 D~~~V~gd~v~ieQVlvNl~~NaldA~~h~--~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 554 DDLMVMGDAVSIEQVLVNLIVNALDASTHF--APWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred ccceecchhhhHHHHHHHHHHHHHhhhccC--CceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 455556667899999999999999995333 33444444432 35689999999999877764
No 120
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=38.37 E-value=80 Score=34.22 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=60.3
Q ss_pred EEEEEEEeCCceeccCceEEEecccccccccceeeeeeeeeeecCcCCCCCCceEEEeeccccCCcCCceeeccCCCCcc
Q 000366 638 RVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASL 717 (1612)
Q Consensus 638 ~~~~~i~~~~~~~~~Gq~Vk~~k~~~~g~~~~~~y~ti~~f~~~~~~~~~gge~~i~~~P~~~~~~~~~~l~~~~~~~~~ 717 (1612)
+-|++++.+|.+|+.||-|-+.-+ .+ ...+.|.|..+..+. +|...-.|+--+||-++....+-.+...+.+-=|
T Consensus 9 ~~y~s~~~dg~~y~vgD~Vlv~~~--~~--~~pyI~~I~~i~~~~-~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF 83 (146)
T cd04713 9 CHYTSFEKDGNKYRLEDCVLLVPE--DD--QKPYIAIIKDIYKQE-EGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELF 83 (146)
T ss_pred eeeeeEEECCEEEECCCEEEEeCC--CC--CCCEEEEEEEEEEcC-CCCEEEEEEeeECHHHhccccccccccCCCCeEE
Confidence 778999999999999999998721 11 225568888877332 2444555666778877743222111111223334
Q ss_pred ccccccccccceecCCccccCC
Q 000366 718 HIGSSLSLPIGVIDSEKCVPVN 739 (1612)
Q Consensus 718 ~~~~~~~~pi~~id~~~~~~~~ 739 (1612)
.....-..|+.-| .+||.++.
T Consensus 84 ~S~~~d~~~~~~I-~gkc~V~~ 104 (146)
T cd04713 84 YSFHRDEVPAESV-LHPCKVAF 104 (146)
T ss_pred EeCCCCcCCHHHC-cceeEEEE
Confidence 4445556788888 77887764
No 121
>PF14501 HATPase_c_5: GHKL domain
Probab=35.26 E-value=54 Score=32.43 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhhcchhhcccCCCceEEEEEEEecCCe
Q 000366 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK 194 (1612)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~~I~I~I~~d~~s 194 (1612)
.++...++-|+|||++|.....+.+.|.|.+...++.
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~ 40 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGF 40 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCE
Confidence 4577889999999999976654455667776665554
No 122
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=32.04 E-value=9.5e+02 Score=34.71 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=66.4
Q ss_pred cCCCcccceEEEEecccCCCCCCcce----EEEEeeceeeeccCCcceecCCCccccccceEEEEeecCce--eEEEEec
Q 000366 1030 LPGSVIKMLKLEMFDAFYNNVKKGLE----VELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKN--VSLSVLS 1103 (1612)
Q Consensus 1030 i~g~~~~~f~vqv~D~wgN~s~~g~~----V~i~~~gl~~~~~~~~~~kv~~~G~a~l~g~l~v~a~y~k~--~sl~Vl~ 1103 (1612)
.++..++.-.+++.|+-||.+.+|.- =+|.+.+|++-+- .....-...|-+-..--+-++-.+++. ++++...
T Consensus 1259 ~~~~~l~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdy-qfVETkAp~Gy~L~a~pv~ftI~~~q~e~~kV~~~n 1337 (1531)
T COG4932 1259 DTGAALSGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDY-QFVETKAPEGYILDATPVNFTIEFNQEEAVKVTKEN 1337 (1531)
T ss_pred CcccccCCCceeeecCCCcEeccCceecCCCcEEecccCCCcc-cceEccCCcceEEeecceeEEEEecccccEEEEEee
Confidence 55556665666788999999988543 2344455555544 211122223333212122333334444 5555555
Q ss_pred CCceeeeecccccccceeeccCCCcccccCCcccceEEEEECCCCCceeeeccCCCCcceE
Q 000366 1104 DNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSH 1164 (1612)
Q Consensus 1104 d~kpv~~~~~~~~~~~l~~~~~~~~~~~aG~~l~~~~v~Vv~edG~~~~~i~~~dk~g~f~ 1164 (1612)
+.+|= .+ .+.+ .++ ..|..|++-.|+++||.|++++.=--.|+.|+..
T Consensus 1338 ~~~~g-sv----------~l~k-~d~-~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~ 1385 (1531)
T COG4932 1338 DAKTG-SV----------VLTK-LDS-SSGVTLEGAEFELLDEEGNILKEGLVTDENGQLL 1385 (1531)
T ss_pred ccccc-cE----------EEEE-eec-ccCccccCcEEEEEcccCceehhcceeCCCCcEE
Confidence 53332 11 1122 233 7889999999999999999976411123456655
No 123
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=30.74 E-value=53 Score=41.86 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcchhhcccCC-CceEEEEEEEecC--CeEEEEECCCCCChHh
Q 000366 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIAE--DKISVFDTGPGMDSTD 208 (1612)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~A~~I~I~I~~d~--~sItV~DNG~GMs~dE 208 (1612)
|..-|-=||.||+-....+. +.-+|.|.+..++ -.|.|.|||.|+.+++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~~ 508 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPDE 508 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCCC
Confidence 44556779999999976663 3346777777643 3588999999999963
No 124
>smart00455 RBD Raf-like Ras-binding domain.
Probab=30.32 E-value=75 Score=30.47 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=36.1
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc-ccc-ccceeecccC
Q 000366 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH-DSM-KRKRKINWNG 95 (1612)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv~~e~~~~~~~~-~~~-~~~~~~~~~~ 95 (1612)
|+|+||||+.+.+++. +++++.|.+.-+=+-++...-.+ ... ..++-++|+.
T Consensus 2 ~~v~LP~~~~~~V~vr---pg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 2 CKVHLPDNQRTVVKVR---PGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred eEEECCCCCEEEEEEC---CCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 6899999999999986 45999999887655555533233 222 2456777863
No 125
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.72 E-value=1.3e+02 Score=33.93 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHhhc
Q 000366 1270 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ 1327 (1612)
Q Consensus 1270 ~~l~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i~~~~~ 1327 (1612)
++|+.|..+|..+++.+..|++++.-++.+|..|+..| |-|++++.|.++..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L------t~eemQe~i~~L~k 130 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL------TTEEMQEEIQELKK 130 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ChHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999877 47888888866533
No 126
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.19 E-value=93 Score=30.77 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.7
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhh
Q 000366 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLV 71 (1612)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv 71 (1612)
++|+||||+.+.+.+.. +|+..|+..+.
T Consensus 2 ~~V~lPn~~~~~v~vrp---~~tv~dvLe~a 29 (77)
T cd01818 2 SWVCLPDNQPVLTYLRP---GMSVEDFLESA 29 (77)
T ss_pred CEEECCCCceEEEEECC---CCCHHHHHHHH
Confidence 68999999999998864 59999999984
No 127
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.99 E-value=97 Score=29.03 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHhhccccc
Q 000366 1278 CIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAAS 1331 (1612)
Q Consensus 1278 ~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i~~~~~saa~ 1331 (1612)
||.++...+..|+++.++|.+.+..++.-+. ..++|..+.=+++.|.|.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~----~ak~EAaRAN~RlDN~a~s 53 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ----AAKEEAARANQRLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHhh
Confidence 5667777777777777777777777776552 3344555444555554443
No 128
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=23.71 E-value=2.9e+02 Score=39.23 Aligned_cols=112 Identities=16% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCcccceEEEEecccCCCCCCcceEEEEeeceeeeccCCcceecCCCccccccc-------eEEEEe--ecCce---eE
Q 000366 1031 PGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSG-------LLKVKA--GYGKN---VS 1098 (1612)
Q Consensus 1031 ~g~~~~~f~vqv~D~wgN~s~~g~~V~i~~~gl~~~~~~~~~~kv~~~G~a~l~g-------~l~v~a--~y~k~---~s 1098 (1612)
.|..+..-.++|.|+.||-..+ ...+|++|.+.+.. .+..+| +|==+ +-
T Consensus 1074 t~~~LaGA~FeLQdk~G~~l~e-------------------nL~TD~~G~v~itdLaPGDYqfVEtkAPtGY~LdatPV~ 1134 (1531)
T COG4932 1074 TGATLAGAEFELQDKDGNTLQE-------------------NLTTDEDGKVEITDLAPGDYQFVETKAPTGYILDATPVN 1134 (1531)
T ss_pred ccccccCceEEEeeccCcchhh-------------------hccccccCcEEeccccCCceeeEEecCCceeEecCccce
Confidence 3445555566666776655444 34589999997776 455553 44333 55
Q ss_pred EEEecC-Ccee-eeecccccccceeeccCCCcccccCCcccceEEEEECCCCCceeeeccCCCCcceE
Q 000366 1099 LSVLSD-NGVI-FKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSH 1164 (1612)
Q Consensus 1099 l~Vl~d-~kpv-~~~~~~~~~~~l~~~~~~~~~~~aG~~l~~~~v~Vv~edG~~~~~i~~~dk~g~f~ 1164 (1612)
+++-.+ ++++ ..++=...-|...++.. |+. ++..|.+-.|+++|+||.....=--.|+.|.-.
T Consensus 1135 FtI~eeq~e~~~vtKeN~~~~GsvqLtK~--Ds~-t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~ 1199 (1531)
T COG4932 1135 FTISEEQDEAAKVTKENTLKPGSVQLTKV--DSA-TKATLAGAEFELQDEDGTLVQEGLTTDENGKIN 1199 (1531)
T ss_pred eEeeccCCceeEEeecccccccceEEEEe--ccc-ccccccCcEEEEEcCCCcEeeccceecCCCcEE
Confidence 555555 6666 44444444455555544 332 899999999999999999966421223455543
No 129
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=23.62 E-value=2.4e+02 Score=33.98 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=54.6
Q ss_pred hhHHHhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHH
Q 000366 1260 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRI 1322 (1612)
Q Consensus 1260 ~~~~~~~k~q~~l~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i 1322 (1612)
.|+....++++.+.....+|..++++++.|+.|...+.+.|..++-+=+.=.+.+.+++.+.+
T Consensus 135 ~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk~~tR~~~q~k~ 197 (308)
T PF06717_consen 135 DFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGKQLTRYEVQRKL 197 (308)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 577779999999999999999999999999999999999999988666554566788888888
No 130
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.94 E-value=1.6e+02 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Q 000366 1265 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIK 1323 (1612)
Q Consensus 1265 ~~k~q~~l~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i~ 1323 (1612)
.......+..+..+|++.++.++.++++.+++++++..|+. +++.+.+.+.
T Consensus 12 ~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--------~~~~ie~~AR 62 (80)
T PF04977_consen 12 GISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN--------DPDYIEKVAR 62 (80)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHH
Confidence 33334444555566777777777777777777777766632 4555555554
No 131
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.44 E-value=2.5e+02 Score=30.23 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Q 000366 1266 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKS 1324 (1612)
Q Consensus 1266 ~k~q~~l~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i~~ 1324 (1612)
++.++.++.+-.=.+.-+.+|+.++++.+.++.++..|+.-+-.-+|-|+++|.+-..+
T Consensus 42 ~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~ 100 (126)
T PF07028_consen 42 KKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLR 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56666666666656667778999999999999999999988877788888888776643
No 132
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.89 E-value=1.9e+02 Score=31.71 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHh
Q 000366 1270 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSI 1325 (1612)
Q Consensus 1270 ~~l~~lg~~i~~~e~~l~~L~~~k~~~~~~i~~l~~~l~~~~~~~~E~~~k~i~~~ 1325 (1612)
++|..|..+|.+..+++..|+++..+++.++..|...+ +.++...+|.++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~el~~~i~~l 121 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------TNEELREEIEEL 121 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHH
Confidence 45666677777777777777777777777666666444 466777777554
No 133
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.32 E-value=4.7e+02 Score=37.32 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHH
Q 000366 1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALE 1396 (1612)
Q Consensus 1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le 1396 (1612)
.+|++|....|.+.+ +.|..|+...+|. .+||+|-+.|+++.
T Consensus 588 ~~g~~~~a~dli~~d-~~~~~~~~~~l~~----t~Iv~~l~~A~~l~ 629 (1163)
T COG1196 588 APGFLGLASDLIDFD-PKYEPAVRFVLGD----TLVVDDLEQARRLA 629 (1163)
T ss_pred ccchhHHHHHHhcCC-HHHHHHHHHHhCC----eEEecCHHHHHHHH
Confidence 789999999999996 6999999998885 79999999999996
Done!