BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000367
(1611 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1
SV=3
Length = 2012
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 386/1670 (23%), Positives = 678/1670 (40%), Gaps = 312/1670 (18%)
Query: 72 LDDQDVQIALKLSDDLHLNEVDCVRLLVSA-NQECGLMG--RDPIEILRLASGLWYTERR 128
L +Q ++ A LSD + E+ V LL++ +Q+ G R + +L L++ +R
Sbjct: 86 LPEQLIKEAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVL-----LYWDGKR 140
Query: 129 DLITALYILF---RAVVLDQGLEEDIVVDIQKYLEDLVNTGLRQRLISLM---------K 176
+ +L L R L ++ ++ ++L+ GL ++++L+ +
Sbjct: 141 CIANSLKALIQSRRGKTWTLELSPELASMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFE 200
Query: 177 ELNREEPTGLGGPLCERYVLDSRGALVERRAVVYRERLILGHCLVLSVLVVRTSPKDVKD 236
+L RE GLG + V D L++ E L C SP +D
Sbjct: 201 KLQRER--GLGSEKHRKEVSD----LIKECRQSLAESLFAWAC---------QSPLGKED 245
Query: 237 AF---SALKDSAAELSENNDTLKHQITFSLLFSLVIAFISDALSTVPDKSSVLSRDASFR 293
L+ E + + D + + +LL+ I+FI + D L
Sbjct: 246 TLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDISFIEQSTEERDDMIHQLPLLTE-- 303
Query: 294 KEFHEIVMATGSDP---IVEGFVGGVRLAWAVHLMLIH---DEIAARE-TVSSSSSSELS 346
K++ + + D + G VRLAWA+ L I D A E T + + +EL+
Sbjct: 304 KQYIATIHSRLQDSQLWKLPGLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELA 363
Query: 347 NIRSCLETIFSNNVFQFLLDKALRTAAYQNDDEDMVYMNNAYLHKLITCFLSHQLARDKV 406
++NVF FL++ + + + ++ Y+ +H LIT FL+ L KV
Sbjct: 364 ---------IADNVFLFLMESVVVSEYFYQEE---FYIRR--VHNLITDFLA--LMPMKV 407
Query: 407 KESKDKAMSVLNSYRIAGSHDFVHDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKEP---- 462
K+ +++A ++ I S ++ + ++D E L+ + E+Y+K P
Sbjct: 408 KQLRNRADE--DARMIHMSMQMGNEPPISLRRDLE-------HLMLLIGELYKKNPFHLE 458
Query: 463 ---------ELLSGNDVLWTFVVFAGEDHTNFQTL-----------------VAFLKMLS 496
E L ++ +++ A + Q + + +LKML
Sbjct: 459 LALEYWCPTEPLQTPTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQ 518
Query: 497 TLASSQEGASKVYELL-----------QGKAFRSIGWRTLFDCLSIYDEKFKQSLQTGGA 545
LA+ + A + LL QG + W F L +Y E ++ L + +
Sbjct: 519 GLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRKDLPSADS 578
Query: 546 L----LPD--FQEGDAKALVAYLNVLQKVM---ENGNS--IERKNWFPDIEPLFKLLSYE 594
+ LP + + L+A+L + ++ EN E W P + L L
Sbjct: 579 VQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQC-- 636
Query: 595 NVPPYLKGALRNAIAACIHVSLVMKDNIWRLLEQYDLPVVVGTHVGNTAQ-PIAGQVYDM 653
++PP LK L +AA S + ++W+ LE T + T + P Q +
Sbjct: 637 SIPPVLKAELLKTLAA-FGKSPEIAASLWQSLEY--------TQILQTVRIPSQRQAIGI 687
Query: 654 QFELNEIEARREQYPSTISFLNLLNALIAEEKDVSDRGRR-----FVGIFRFVYDHVFGP 708
+ ELNEIE+R E+YP T +F L++ L+ E S+ G F +F+ D VF
Sbjct: 688 EVELNEIESRCEEYPLTRAFCQLISTLV-ESSFPSNLGAGLRPPGFDPYLQFLRDSVFLR 746
Query: 709 FPQRAYADPCEKWQLVVACLKHFHMILNMYDIQEEDIDNAVEQSSTLTQSSPIQMQLPVL 768
F RAY EKW++ L+ F+ +L Y+ Q ED V+Q L I + P
Sbjct: 747 FRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDF---VDQFVELQGEEIIAYKPPGF 803
Query: 769 ELLKDFMSGKAVFRNIMGILQPGVDSIITERNNQIYGPL-----LEKAVQLSLEIVILVF 823
L+ ++ + + +L+ GV + T Y P LEKAVQ L ++ L
Sbjct: 804 SLMYHLLNESPMLELALSLLEEGVKQLDT------YAPFPGKKHLEKAVQHCLALLNLTL 857
Query: 824 EKDLLLSDFWR---------PLYQPVDVI--LSQDHNQIVALLEYVRY-DFLPQIQQCSI 871
+K+ L D R PL Q + I ++ + +V + Y+ + + P++ S
Sbjct: 858 QKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESA 917
Query: 872 KIMSILSSRMVGLVQLLLKYNAASS----LVEDYAACLE-------LRSEESQIIEKS-- 918
KI+ +S ++L+ + S L+ + CL+ +R EE +EK
Sbjct: 918 KILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEGSELEKKLV 977
Query: 919 --GDDPGVLIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQ-------PKFHYSCLK 969
+ + I+ LLI ++ PN+ LL F+L P+ T LQ P+ +CL
Sbjct: 978 AIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPR---TCLH 1034
Query: 970 IILEILEKVSKPDVNAL-------LHEFGFQLLYELCLDPLTCGPTMDLLSNKKYQFFVK 1022
IL ILEK ++ + L E +Q++Y+LC T GPTM L + F
Sbjct: 1035 AILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQ-DFLFS 1093
Query: 1023 HLDAIGVAPLPKRNSNQALRISSLHQRAWLLKLLAIELHAGYGSSSTHQEACQTILAHLF 1082
L + SN+ IS L+Q +WL+K +IEL +S Q + L HL
Sbjct: 1094 QLQYLPF-------SNKEYEISMLNQMSWLMKTASIELRV---TSLNRQRSHTQRLLHLL 1143
Query: 1083 -----------GRDHIEDTDRTLSLPFMVQNITEHAGTRTISKSKVLELLEVVQFRSPDT 1131
G IED +R++S F+ H T T + K+L +L+ + F
Sbjct: 1144 LDDMPVKPYSDGEGGIEDENRSVS-GFL------HFDTATKVRRKILNILDSIDFSQ--- 1193
Query: 1132 AMKLSQIVSNMKYDLL----AEEILGNPTTSGKGGIYYYSERGDRLIDLSSFSDKLWKKL 1187
+I ++ D E+++ N + + RG + ++ L ++
Sbjct: 1194 -----EIPEPLQLDFFDRAQIEQVIAN--------CEHKNLRGQTVCNVKLLHRVLVAEV 1240
Query: 1188 NIVYPQLSNFGSEAELNDVKEAIQQLLRWGWKYNKNLEEQAAQLHMLTGWSQVVEV---S 1244
N L + + + E I +L++ NK L+ A+ H L W Q+VE+ +
Sbjct: 1241 NA----LQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTA 1296
Query: 1245 VSRRISALGNRSEILYQIL----DACLGASASPDCSLRMA-FILCQVALTCMAKLRDEK- 1298
+ + +R I+ IL D L A+ + +A + A A L ++K
Sbjct: 1297 CPQDLIQAEDRQLIIRDILQDVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKE 1356
Query: 1299 ------------FLCPGGLNSDSVTFLDVIMVKQLSNGACHSLLFKLIMAILRNESS-EA 1345
F+ S ++ + + + + +L KL+ IL+ +
Sbjct: 1357 TSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQR 1416
Query: 1346 LRRRQYALLLSYFQYCQHMLAPDVPTTVLQYLLLDEQDGEDLDLQKIDKEQAELTHANFS 1405
+R Y LL Y Q Q PD + + ED+ K+ +E N +
Sbjct: 1417 VRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDV-FSKLQRE-------NIA 1468
Query: 1406 TLRKEAQAILDLFIKDATQGSEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMN 1465
+ A++++ +DA G E G+ L+L +LD ++ +D ++ +L L + G+L+
Sbjct: 1469 IIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLK----- 1523
Query: 1466 VSNVSYQDGKRSLDT--------LQRACTLEAELALLLRISHKYGKSGAQVLFSMGSLEH 1517
V S + R+L + L+ T E+++A L R++ + GA L G +
Sbjct: 1524 VLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKI--QQGALELLRSGVIVR 1581
Query: 1518 IASCKAVGLQGSLRRVATKPRRALG---------GDIDRQRMIVTPMLRL 1558
+A C+ + R T P+ G +DR R I+ P L+L
Sbjct: 1582 LAQCQVYDM-----RPETDPQSMFGMRDPPMFIPTPVDRYRQILLPALQL 1626
>sp|P78847|NU186_SCHPO Nucleoporin nup186 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup186 PE=2 SV=2
Length = 1647
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 166/745 (22%), Positives = 299/745 (40%), Gaps = 92/745 (12%)
Query: 7 LLATIESALLGPSPPSPAQRIELIHAIHNSLSSFKSLLSYPPPKPSDRAQVQSREVRLPD 66
LL IES PS P+ + R+ LI + + F L+ P + R +++S EV L
Sbjct: 15 LLQCIES---NPSNPNVSSRL-LIQCLESYSKDFLKFLALDPANANSRKKLESGEVELGG 70
Query: 67 SPPISLDDQDVQIALKLSDDLHLNEVDCVRLLVSANQECGLMGRDPIEILRLASGLWYTE 126
+++Q +Q++L LS L+L+E+ C LL + + R P++ A ++
Sbjct: 71 VIN-KVNEQFIQLSLTLSTQLNLDEIQCASLLQRGIEASQNLDRTPVQA---ALYFFFLA 126
Query: 127 RRDLITALYILFRAVVLDQGLEEDIVVDIQKYLEDLVNTGLRQRLISLMKELNREEPTGL 186
R L+ L L R V L + LE DI ++ YL+ L G +L+K P L
Sbjct: 127 REQLLECLESLTRVVGL-KDLESDISTALKSYLQSLCENG-----NNLVKTCIDTIPI-L 179
Query: 187 GGPLCERYVLDSRGALVERRAVV-YRERLILGH------CLVLSVLVVRTSPKDVKDAFS 239
+ E ++ G ++ VV ++E + L H +SV++ + + D+ S
Sbjct: 180 DNKVSEILKSEAGGQILGVSEVVDFQEFIRLSHEAHVAELETISVILYQLAKVDLFQN-S 238
Query: 240 ALKDSAAELSENNDTLKHQITFSLLFSLVIAFISDALST--VPD-KSSVLSRDASFRKEF 296
+ L + + K+ + L+ + AFI L +PD K + S ++
Sbjct: 239 HFESLLVMLRKYDSPNKNAV---LILPTLYAFIDKVLEVEYLPDQKVQLRSNSVEILQKI 295
Query: 297 HE-IVMATGSDPIVEGFVGGVRLAWAVHLMLIHDEIAARETVSSSSSSELSNIRSCLETI 355
H+ I+ + D F + + W L +I E V S E + I++ I
Sbjct: 296 HQAIIQSPSQDWRSSQFKNILGIWWVTRLNATCKQI---EKVPSFIDYE-TTIKNAANEI 351
Query: 356 FSNNVFQ---FLLDKALRTA-------AYQNDDEDMVYMNNAYLHKLITCFLSHQLARDK 405
N VF LL R + A+ + +N + + I + +L R
Sbjct: 352 IQNGVFSDMITLLVYPFRQSETEGMEWAFAFKSRSRITVNWSLIRPFIASIIFSEL-RSF 410
Query: 406 VKESKDKAMSVLNSYRIAGSHDFV----HDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKE 461
+ +L + R+ ++ + +++P +Q E PF +S IY
Sbjct: 411 AQAFVSYMPDILKTLRLLEEDRYLTNTTYPTSIPGEQIEEY--FPFEEFYYLLSSIYTYN 468
Query: 462 PELLSG--NDV---LWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVYEL----- 511
+S +D+ ++ F+ ++ + AF +L++L + ASK+YEL
Sbjct: 469 VSWISDFWDDIESDMYGFLTWSMGSQIP-GIITAFTLLLASLCKNTTSASKIYELFSEPI 527
Query: 512 -----LQGKAFRSIGWRTLFDCLSIYDEKFK--QSLQTGGALL---PDFQEGDAKA---L 558
L+ S W +F+ Y K Q++ T L D E D + L
Sbjct: 528 PEVGHLESLMITSPSWSYIFNVFRYYISHLKPVQTVVTSSGLARVHTDPSEIDTDSALIL 587
Query: 559 VAYLNVLQKVMENGNSI-----ERKNWFPDIEPLFKLLSYENVPPYLKGALRNAIAACIH 613
AY+ + V+ I E ++ P I LF+LL +P ++ + A+ + H
Sbjct: 588 QAYILLFSSVVRQDAQIASTFCENQDLNP-IATLFELLECR-LPDSVRICIVRALESLAH 645
Query: 614 VSLVMKDN-IWRLLEQYDLPVVVGTHVGNTA---------QPIAGQVYDMQFELNEIEAR 663
+S +N +W L+ + + V+ G A + + V LN I
Sbjct: 646 LSTGSFNNALWTALDNWFVSSVLFDVDGGLAPMSIPAISKRSLTKPVTSCGPLLNNIRRL 705
Query: 664 REQYPSTISFLNLLNALIAEEKDVS 688
ISF+NLL +L + +++
Sbjct: 706 TVNLEMKISFVNLLTSLTRNKSELN 730
>sp|Q6NKL5|RECF_CORDI DNA replication and repair protein RecF OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=recF PE=3 SV=1
Length = 397
Score = 37.4 bits (85), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 666 QYPSTISFLNLLN---------ALIAE-----EKDVSDRGRRFVGIFRFVYDHVFGPFPQ 711
+Y ST+ F +++ A++AE +K++ DRG VG R D V G +P
Sbjct: 232 RYVSTVPFADVVELPSPEEFEAAMLAELGQCRDKEI-DRGVSLVGPHRDDLDVVLGDYPA 290
Query: 712 RAYADPCEKWQLVVAC-LKHFHMILN--------MYDI-QEEDIDNAVEQSSTLTQSSPI 761
+ +A E W + ++ L FH++ N + D+ E D + S ++ +
Sbjct: 291 KGFASHGETWSMCLSLRLAEFHLLRNDGTDPVLILDDVFAELDTQRREKLVSVTAEAEQV 350
Query: 762 QMQLPVLELLKDFMSGKAVFRNIMGI 787
+ V + L D ++ AV R+ + +
Sbjct: 351 LITAAVGDDLPDTLTESAVHRHFVSV 376
>sp|Q5R7Y0|BAI2_PONAB Brain-specific angiogenesis inhibitor 2 OS=Pongo abelii GN=BAI2 PE=2
SV=2
Length = 1485
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 21 PSPAQRIELI-HAIHNSLSSFKSL-LSYPPPKPSDRAQVQSREVRLPDSPPISLDDQDVQ 78
PSP +R L H H S S+FKS+ L PPKP +R + P PP D D Q
Sbjct: 1427 PSPGERPSLSQHRRHQSWSTFKSMTLGSLPPKPRERLTLHRAAAWEPTEPP----DGDFQ 1482
Query: 79 I 79
Sbjct: 1483 T 1483
>sp|O60241|BAI2_HUMAN Brain-specific angiogenesis inhibitor 2 OS=Homo sapiens GN=BAI2 PE=2
SV=2
Length = 1585
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 21 PSPAQRIELI-HAIHNSLSSFKSL-LSYPPPKPSDRAQVQSREVRLPDSPPISLDDQDVQ 78
PSP +R L H H S S+FKS+ L PPKP +R + P PP D D Q
Sbjct: 1527 PSPGERPSLSQHRRHQSWSTFKSMTLGSLPPKPRERLTLHRAAAWEPTEPP----DGDFQ 1582
Query: 79 I 79
Sbjct: 1583 T 1583
>sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Petunia hybrida PE=1 SV=1
Length = 479
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 450 LLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVY 509
LLE ++EI + P LL +D ++ +++A HT+F +L T+ G S
Sbjct: 257 LLEQIAEIVARHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTV----NGFS--- 309
Query: 510 ELLQGKAFRSIGWR 523
KAF GWR
Sbjct: 310 -----KAFAMTGWR 318
>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
Length = 475
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 449 SLLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKV 508
SLLE ++ I K P LL +D ++ +++A HT+F +L + T+ G S
Sbjct: 252 SLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTV----NGFS-- 305
Query: 509 YELLQGKAFRSIGWR 523
KAF GWR
Sbjct: 306 ------KAFAMTGWR 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,174,183
Number of Sequences: 539616
Number of extensions: 23183277
Number of successful extensions: 59167
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 59150
Number of HSP's gapped (non-prelim): 19
length of query: 1611
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1480
effective length of database: 120,879,763
effective search space: 178902049240
effective search space used: 178902049240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)