Query 000367
Match_columns 1611
No_of_seqs 172 out of 241
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 17:22:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000367.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_145-149//hhsearch_pdb/000367hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 1.0 1 1 11.0 5.3 41 1425-1467 179-219 (296)
2 1vdy_A Hypothetical protein (R 1.0 1 1 10.4 10.2 88 966-1085 45-132 (140)
3 2kl8_A OR15; structural genomi 1.0 1 1 9.0 1.3 28 61-89 43-70 (85)
4 2zrr_A Mundticin KS immunity p 1.0 1 1 8.6 6.2 58 118-176 21-83 (118)
5 2db0_A 253AA long hypothetical 1.0 1 1 8.5 4.4 20 598-617 84-103 (253)
6 3dad_A FH1/FH2 domain-containi 1.0 1 1 8.5 7.7 74 1411-1492 256-335 (339)
7 2k19_A Putative piscicolin 126 1.0 1 1 8.5 5.3 50 126-176 12-63 (98)
8 1sz9_A PCF11 protein; RNA poly 1.0 1 1 8.3 2.7 34 1409-1442 39-72 (144)
9 4bbr_M Transcription initiatio 1.0 1 1 8.2 0.0 95 82-178 241-339 (345)
10 2fv2_A RCD1 required for cell 1.0 1 1 8.2 5.0 70 547-618 62-137 (268)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=1.00 E-value=1 Score=11.02 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHC
Q ss_conf 9970599999999999800581059999972190989998710
Q 000367 1425 GSEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMNVS 1467 (1611)
Q Consensus 1425 G~~~~r~~Al~lLd~Lv~ld~~~~il~~L~~~g~L~~~i~sl~ 1467 (1611)
+....|.-|..+|..|..-+ ......+.+.|.++.++.-++
T Consensus 179 ~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g~i~~Lv~LL~ 219 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMGMVQQLVALVR 219 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCHHHHHHHHC
T ss_conf 99899999999999998589--688999998687999999876
No 2
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=1.00 E-value=1 Score=10.39 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 41999999998307999742379999999998314999818899999501020599854210788999889833688999
Q 000367 966 SCLKIILEILEKVSKPDVNALLHEFGFQLLYELCLDPLTCGPTMDLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALRISS 1045 (1611)
Q Consensus 966 ScLhsIL~lL~~~~~~~~~p~L~e~~~~lL~~Lc~~p~TS~~vL~~LR~~~~~ff~~~l~~~~i~~~~~~~~~~~~~~s~ 1045 (1611)
+.++-|++.|.+... +..|+.+-+|++||-.||.+- |+.+.+.+|.+- ...+.+..-.-.|.|.... ..
T Consensus 45 ~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~G--s~~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~-d~----- 113 (140)
T 1vdy_A 45 SIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKS--GSEFRREMQRNS--VAVRNLFHYKGHPDPLKGD-AL----- 113 (140)
T ss_dssp HHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHTT--HHHHTTTTCCCCCCTTTSS-CH-----
T ss_pred HHHHHHHHHHHHHHC-CCCCCEEEHHHHHHHHHHHHC--CHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCC-CH-----
T ss_conf 589999999999965-899652004999999999719--899999999809--9999999658999744664-25-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999998214998503589999999841899
Q 000367 1046 LHQRAWLLKLLAIELHAGYGSSSTHQEACQTILAHLFGRD 1085 (1611)
Q Consensus 1046 L~~rs~lL~~~AlEL~~~~~~~s~~~~~~~~ll~~L~~~~ 1085 (1611)
+..-|...+.++++|++..
T Consensus 114 ---------------------g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 114 ---------------------NKAVRETAHETISAIFSEE 132 (140)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTCCS
T ss_pred ---------------------HHHHHHHHHHHHHHHHCCC
T ss_conf ---------------------0899999999999971868
No 3
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=1.00 E-value=1 Score=9.00 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=16.8
Q ss_pred CEECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 64769999633698899999998521299
Q 000367 61 EVRLPDSPPISLDDQDVQIALKLSDDLHL 89 (1611)
Q Consensus 61 ~v~l~~~~~~~ln~~f~~~al~LSD~ldL 89 (1611)
+|.+.+. +-.+-+++..+|-.|+.+||+
T Consensus 43 eiritgv-peqvrkelakeaerlakefni 70 (85)
T 2kl8_A 43 EIRITGV-PEQVRKELAKEAERLAKEFNI 70 (85)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEECC-HHHHHHHHHHHHHHHHHHCCE
T ss_conf 9998169-099999999999999876173
No 4
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=1.00 E-value=1 Score=8.57 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=42.6
Q ss_pred HHHHHHHH---HHHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH
Q ss_conf 47667578---4599-9999999998310265742579999999999997202-8999999999
Q 000367 118 LASGLWYT---ERRD-LITALYILFRAVVLDQGLEEDIVVDIQKYLEDLVNTG-LRQRLISLMK 176 (1611)
Q Consensus 118 ~a~~~yy~---~Rr~-ll~~l~~L~~~~~~~~~l~~~~~~~v~~~~~~l~~~~-l~~kil~~l~ 176 (1611)
...+=||. +|+. .+.++..|+.-.. ++.-..+++.+...|.++|.+++ .+..|++-|.
T Consensus 21 M~~LKWFsGGkER~~~Ai~II~~Ll~~l~-~~~~~~~Lk~vL~~Y~~ELk~~~tSvPfILSRMN 83 (118)
T 2zrr_A 21 MSNLKWFSGGDDRRKKAEVIITELLDDLE-IDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRMN 83 (118)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHC-SCSSSHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCCCEECCCCHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 54423211887999999999999999724-6875234999999999999659987106998740
No 5
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=8.54 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHCCHH
Q ss_conf 54999999999975104936
Q 000367 598 PYLKGALRNAIAACIHVSLV 617 (1611)
Q Consensus 598 ~~Lka~i~~~Laal~~~s~~ 617 (1611)
.+|..+|=++++.++...|+
T Consensus 84 IpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 84 IPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHCHH
T ss_conf 85388988987589871899
No 6
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=8.48 Aligned_cols=74 Identities=8% Similarity=0.118 Sum_probs=53.4
Q ss_pred HHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHCCC-C---HHHHHHHHHHCHHHHHHHHHCHH-HHHCCCCCCCHHHHH
Q ss_conf 669999986-10258997059999999999980058-1---05999997219098999871022-110124782136678
Q 000367 1411 AQAILDLFI-KDATQGSEPGKTLSLYVLDALICIDH-E---KYFLNQLQSRGFLRSCLMNVSNV-SYQDGKRSLDTLQRA 1484 (1611)
Q Consensus 1411 ~e~Li~vIc-~DA~~G~~~~r~~Al~lLd~Lv~ld~-~---~~il~~L~~~g~L~~~i~sl~d~-~L~~~~~~~~~l~~L 1484 (1611)
-+.+|.++- +|. |...-++-|+.|+++++.-.+ + ..+.+.|.+.|.=..+.+-++.. . .++....+
T Consensus 256 ~~~Lv~~L~~~~~--~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~------~~~l~~Ql 327 (339)
T 3dad_A 256 WANLVSILEEKNG--ADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGT------DVDLRTQL 327 (339)
T ss_dssp THHHHHHHTTTTS--CCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTS------CHHHHHHH
T ss_pred HHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCC------CHHHHHHH
T ss_conf 8999999851589--879999999999999984499766799999999873589999998753588------98899999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000367 1485 CTLEAELA 1492 (1611)
Q Consensus 1485 ~~yea~la 1492 (1611)
..||..+-
T Consensus 328 ~iyE~~~~ 335 (339)
T 3dad_A 328 VLYENALK 335 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999864
No 7
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=1.00 E-value=1 Score=8.48 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH
Q ss_conf 4599-9999999998310265742579999999999997202-8999999999
Q 000367 126 ERRD-LITALYILFRAVVLDQGLEEDIVVDIQKYLEDLVNTG-LRQRLISLMK 176 (1611)
Q Consensus 126 ~Rr~-ll~~l~~L~~~~~~~~~l~~~~~~~v~~~~~~l~~~~-l~~kil~~l~ 176 (1611)
+|+. -+.++..|+.-...+. -..++..+...|.++|.+++ .++.|++-|.
T Consensus 12 ER~~~Ai~iI~~Ll~~l~~~~-~~~~Lk~vL~~Y~~EL~~~~tSvP~ILSRMN 63 (98)
T 2k19_A 12 ERSNQAENIITDLLDDLKTDL-DNESLKKVLENYLEELKQKSASVPLILSRMN 63 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-SCSSTHHHHHHHHHHHHSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999999999725687-5334999999999999659986127998851
No 8
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=1.00 E-value=1 Score=8.33 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8466999998610258997059999999999980
Q 000367 1409 KEAQAILDLFIKDATQGSEPGKTLSLYVLDALIC 1442 (1611)
Q Consensus 1409 ~~~e~Li~vIc~DA~~G~~~~r~~Al~lLd~Lv~ 1442 (1611)
.+.+.++++|++-.......-|..+|+++|++++
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvk 72 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICK 72 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999604977568999999999987
No 9
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=1.00 E-value=1 Score=8.23 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHCCCCH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9852129998---99999999743100226999254412476675784599-9999999998310265742579999999
Q 000367 82 KLSDDLHLNE---VDCVRLLVSANQECGLMGRDPIEILRLASGLWYTERRD-LITALYILFRAVVLDQGLEEDIVVDIQK 157 (1611)
Q Consensus 82 ~LSD~ldLdE---i~a~eLl~~a~~~~~~~~~~~~~l~r~a~~~yy~~Rr~-ll~~l~~L~~~~~~~~~l~~~~~~~v~~ 157 (1611)
+....|+|++ -.|.+++..+.+.+...||.|..+ +|+.+|+-.+.. .=.+.+.+-....-++..=..-...+..
T Consensus 241 Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~I--AAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~ 318 (345)
T 4bbr_M 241 RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITI--AVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYE 318 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999829958999999999999886054048876889--99999999999689989999999979899999999999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999997202899999999973
Q 000367 158 YLEDLVNTGLRQRLISLMKEL 178 (1611)
Q Consensus 158 ~~~~l~~~~l~~kil~~l~~l 178 (1611)
+.+++++.....+-..-+..+
T Consensus 319 ~~~~l~~~~~~~~~~~~~~~l 339 (345)
T 4bbr_M 319 HRDKLVDPQLIANGVVSLDNL 339 (345)
T ss_dssp ---------------------
T ss_pred HHHHHCCHHHHHCCCCCHHHC
T ss_conf 998646987764255764238
No 10
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=8.19 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-CHHH
Q ss_conf 99999201999999999999998618611111437-----782889976148888654999999999975104-9366
Q 000367 547 LPDFQEGDAKALVAYLNVLQKVMENGNSIERKNWF-----PDIEPLFKLLSYENVPPYLKGALRNAIAACIHV-SLVM 618 (1611)
Q Consensus 547 ~~~l~~~e~~~L~a~L~Li~~V~~~~~~~~~~~~~-----~~i~~L~~Ll~~~~vp~~Lka~i~~~Laal~~~-s~~~ 618 (1611)
+|.+++....-+...|.|++.||.|++ .+..+. -.+.+++...+-.+.--+||=+.+..++|+++. +++.
T Consensus 62 pp~Lt~~~SnRVcnaLaLlQcvAshpe--tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV 137 (268)
T 2fv2_A 62 PPTLTAHQSNRVCNALALLQCVASHPE--TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV 137 (268)
T ss_dssp TBCCCHHHHHHHHHHHHHHHHHHHCTT--THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 742687887189999999999970853--3468898066577624510556788520454648877788760685999
Done!