Query 000367
Match_columns 1611
No_of_seqs 172 out of 241
Neff 7.4
Searched_HMMs 13730
Date Tue Mar 26 17:33:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000367.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_145-149//hhsearch_scop/000367hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m3ka2 c.95.1.1 (A:269-392) B 25.8 6.3 0.00046 13.0 -0.2 41 51-91 26-66 (124)
2 d1afwa2 c.95.1.1 (A:294-417) T 24.2 6.9 0.00051 12.8 -0.2 39 53-91 30-68 (124)
3 d1ulqa2 c.95.1.1 (A:276-400) B 5.5 62 0.0045 6.9 0.2 32 55-86 29-60 (125)
4 d1ug7a_ a.24.24.1 (A:) Domain 4.4 82 0.0059 6.2 0.6 13 1232-1244 27-39 (128)
5 d1wdkc2 c.95.1.1 (C:264-391) F 4.3 67 0.0049 6.7 -0.5 26 61-86 37-62 (128)
6 d1tifa_ d.15.8.1 (A:) Translat 4.2 87 0.0063 6.0 -0.0 35 56-90 8-42 (76)
7 d1wpba_ a.233.1.1 (A:) Hypothe 3.6 1.1E+02 0.0077 5.5 3.1 12 485-496 135-146 (168)
8 d1upka_ a.118.1.15 (A:) Mo25 p 3.5 1.1E+02 0.0081 5.4 12.9 166 850-1057 156-322 (330)
9 d1buoa_ d.42.1.1 (A:) Promyelo 3.0 1.3E+02 0.0097 4.9 3.0 35 68-102 85-121 (121)
10 d1n62b2 d.133.1.1 (B:147-809) 2.9 1.4E+02 0.0099 4.8 2.1 37 595-631 622-661 (663)
No 1
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=25.76 E-value=6.3 Score=13.02 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 30244330466476999963369889999999852129998
Q 000367 51 PSDRAQVQSREVRLPDSPPISLDDQDVQIALKLSDDLHLNE 91 (1611)
Q Consensus 51 ~~sR~~l~~g~v~l~~~~~~~ln~~f~~~al~LSD~ldLdE 91 (1611)
..-++-+++.+.+++|.+-+.+|+.|.-.++...++|++|+
T Consensus 26 ~A~~~lL~r~gl~~~Did~~EinEAFA~q~la~~~~l~id~ 66 (124)
T d1m3ka2 26 PASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP 66 (124)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEECCSBHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHCCCCHHCCCHHHHCCCCHHHEEEEHHHHCCCH
T ss_conf 77899999808983006577751210123022347529883
No 2
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.17 E-value=6.9 Score=12.76 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=23.4
Q ss_pred HHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 244330466476999963369889999999852129998
Q 000367 53 DRAQVQSREVRLPDSPPISLDDQDVQIALKLSDDLHLNE 91 (1611)
Q Consensus 53 sR~~l~~g~v~l~~~~~~~ln~~f~~~al~LSD~ldLdE 91 (1611)
-++.+++.+++++|.+-+.+|+.|.-.++.-.++|++|+
T Consensus 30 i~klL~r~gl~~~Did~~EinEAFA~q~l~~~~~l~id~ 68 (124)
T d1afwa2 30 IPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL 68 (124)
T ss_dssp HHHHHHHHTCCGGGCSEEEECCSBHHHHHHHHHHHTCCG
T ss_pred HHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCH
T ss_conf 999999839995657489843630579999898709992
No 3
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}
Probab=5.53 E-value=62 Score=6.94 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHCCCCEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 43304664769999633698899999998521
Q 000367 55 AQVQSREVRLPDSPPISLDDQDVQIALKLSDD 86 (1611)
Q Consensus 55 ~~l~~g~v~l~~~~~~~ln~~f~~~al~LSD~ 86 (1611)
+.+++.+++++|.+-+.+|+.|.-.++..-++
T Consensus 29 ~~L~r~gl~~~Did~~EinEAFAaq~l~~~~~ 60 (125)
T d1ulqa2 29 KALERAGLSFSDLGLIELNEAFAAQALAVLRE 60 (125)
T ss_dssp HHHHHTTCCGGGCSEEEECCSBHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHEECCCCCHHHHHHHHH
T ss_conf 67520686734342100012432148999998
No 4
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.44 E-value=82 Score=6.21 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9799999999999
Q 000367 1232 HMLTGWSQVVEVS 1244 (1611)
Q Consensus 1232 ~~L~aW~qLv~V~ 1244 (1611)
.-+++|.||||-+
T Consensus 27 tdFDSWGQLVEA~ 39 (128)
T d1ug7a_ 27 ADFDSWGQLVEAI 39 (128)
T ss_dssp HHHHHHTCHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 7864199999999
No 5
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}
Probab=4.29 E-value=67 Score=6.74 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=9.4
Q ss_pred CEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 64769999633698899999998521
Q 000367 61 EVRLPDSPPISLDDQDVQIALKLSDD 86 (1611)
Q Consensus 61 ~v~l~~~~~~~ln~~f~~~al~LSD~ 86 (1611)
+++++|.+-+.+|+.|.-.++..-++
T Consensus 37 gl~~~did~~EinEAFA~q~l~~~~~ 62 (128)
T d1wdkc2 37 GLNMADIDFIELNEAFAAQALPVLKD 62 (128)
T ss_dssp TCCGGGCCEEEECCSBHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 75524451677501320134443322
No 6
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.17 E-value=87 Score=6.05 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 33046647699996336988999999985212999
Q 000367 56 QVQSREVRLPDSPPISLDDQDVQIALKLSDDLHLN 90 (1611)
Q Consensus 56 ~l~~g~v~l~~~~~~~ln~~f~~~al~LSD~ldLd 90 (1611)
++...+|.+-|.+--.+.---.++|+.++++.+||
T Consensus 8 ~I~a~~VrlI~~~G~~lGv~~~~eAl~~A~~~glD 42 (76)
T d1tifa_ 8 QIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLD 42 (76)
T ss_dssp GCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCEECEECHHHHHHHHHHCCCC
T ss_conf 84689899987999696704299999999981998
No 7
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=1.1e+02 Score=5.53 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHH
Q ss_conf 422999999998
Q 000367 485 FQTLVAFLKMLS 496 (1611)
Q Consensus 485 ~~~~~af~~ML~ 496 (1611)
.||.-.|-.||+
T Consensus 135 ~pm~~~Y~RML~ 146 (168)
T d1wpba_ 135 TPMWEKYQRMLN 146 (168)
T ss_dssp SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 568999999999
No 8
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.47 E-value=1.1e+02 Score=5.40 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=101.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89999846237985035999999999985423548999740001458999999981201231000146898739999999
Q 000367 850 QIVALLEYVRYDFLPQIQQCSIKIMSILSSRMVGLVQLLLKYNAASSLVEDYAACLELRSEESQIIEKSGDDPGVLIMQL 929 (1611)
Q Consensus 850 ~I~~l~~yv~~~~~p~ia~~aikIL~~ls~~~~~l~~~l~~~~es~~I~~~Fv~~Le~~~~~~~~~e~~~~~~k~~IL~l 929 (1611)
..-.+-.||..+. -+++.-|...++.+-.+.+.++.-+....- ...-..|-..|+ .++.-+|..-+.|
T Consensus 156 ~f~~fF~yv~~~~-FdiasDAf~TfkelLt~hk~~~aefl~~Ny-d~Ff~~~~~LL~----------s~NYVtrRqSlKL 223 (330)
T d1upka_ 156 QFYDFFRYVEMST-FDIASDAFATFKDLLTRHKLLSAEFLEQHY-DRFFSEYEKLLH----------SENYVTKRQSLKL 223 (330)
T ss_dssp GGGHHHHHTTCSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHTH-HHHHHHHHHHTT----------CSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHC----------CCCHHHHHHHHHH
T ss_conf 8999999973871-588898999999999708899999999849-999999999964----------8842779988999
Q ss_pred HHHCC-CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 98515-99998188867256559965433335899854199999999830799974237999999999831499981889
Q 000367 930 LIDNI-SRPAPNITHLLLKFDLDTPIERTVLQPKFHYSCLKIILEILEKVSKPDVNALLHEFGFQLLYELCLDPLTCGPT 1008 (1611)
Q Consensus 930 Ll~~L-~~~~PniAHlLLGF~~~~~~~~~~l~p~~~~ScLhsIL~lL~~~~~~~~~p~L~e~~~~lL~~Lc~~p~TS~~v 1008 (1611)
|-+-| ++. |..-. ..-+ +...-|..+..+|.... ..+.--+|+++.--.+||.-+.++
T Consensus 224 LgelLldr~--N~~vm-----------~~Yv---s~~~nLkl~M~LLrd~s-----k~Iq~EAFhVFKvFVANpnKp~~I 282 (330)
T d1upka_ 224 LGELLLDRH--NFTIM-----------TKYI---SKPENLKLMMNLLRDKS-----RNIQFEAFHVFKVFVANPNKTQPI 282 (330)
T ss_dssp HHHHHHSGG--GHHHH-----------HHHT---TCHHHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHH--HHHHH-----------HHHH---CCHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999986556--79999-----------9996---78888999999821731-----337798665855301189997799
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999501020599854210788999889833688999999999999999
Q 000367 1009 MDLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALRISSLHQRAWLLKLLA 1057 (1611)
Q Consensus 1009 L~~LR~~~~~ff~~~l~~~~i~~~~~~~~~~~~~~s~L~~rs~lL~~~A 1057 (1611)
...|..|+ +-+.+.+..-+. ... .+. .|..-++++++-++
T Consensus 283 ~~IL~~Nr-~kLl~fl~~f~~----d~~-~De---qF~~EK~~lI~~I~ 322 (330)
T d1upka_ 283 LDILLKNQ-AKLIEFLSKFQN----DRT-EDE---QFNDEKTYLVKQIR 322 (330)
T ss_dssp HHHHHHTH-HHHHHHHHHTTT----TC--CCS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHCCC----CCC-CHH---HHHHHHHHHHHHHH
T ss_conf 99999839-999999986788----887-314---07899999999998
No 9
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.98 E-value=1.3e+02 Score=4.92 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHH--HHHHHHHHH
Q ss_conf 96336988999999985212999899--999999743
Q 000367 68 PPISLDDQDVQIALKLSDDLHLNEVD--CVRLLVSAN 102 (1611)
Q Consensus 68 ~~~~ln~~f~~~al~LSD~ldLdEi~--a~eLl~~a~ 102 (1611)
++..++++-+.+.+.+|+.|.++++. |.+.+.+-+
T Consensus 85 g~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~i~ 121 (121)
T d1buoa_ 85 ATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp SCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 6207868899999999999598899999999997287
No 10
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=2.92 E-value=1.4e+02 Score=4.84 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHCCC
Q ss_conf 88654999999999975104---93669999999761488
Q 000367 595 NVPPYLKGALRNAIAACIHV---SLVMKDNIWRLLEQYDL 631 (1611)
Q Consensus 595 ~vp~~Lka~i~~~Laal~~~---s~~~~~~iW~~Ld~~~i 631 (1611)
++++.+-++|+++++++-.+ .|-...+||..|+..++
T Consensus 622 ~~~~Ai~nAI~~A~~~~G~r~~~lP~tpe~v~~~~~~~~~ 661 (663)
T d1n62b2 622 GGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGL 661 (663)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 4699999999999983499656699999999999997479
Done!