Query 000368
Match_columns 1611
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 18:13:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000368.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_145-149//hhsearch_scop/000368hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 13.6 20 0.0014 11.0 0.1 13 771-783 22-34 (145)
2 d1ey1a_ a.79.1.1 (A:) Antiterm 4.0 93 0.0068 6.5 2.8 102 1181-1314 11-113 (139)
3 d1tuza_ a.39.1.7 (A:) Diacylgl 3.8 99 0.0072 6.3 1.4 13 517-529 92-104 (118)
4 d1v8da_ c.140.1.1 (A:) Hypothe 3.8 80 0.0058 7.0 -0.5 17 101-117 63-79 (193)
5 d1qhda1 a.115.1.2 (A:1-148,A:3 3.7 1E+02 0.0073 6.3 0.1 56 557-612 66-133 (213)
6 d1om2a_ a.23.4.1 (A:) Mitochon 3.6 1.1E+02 0.0077 6.1 1.8 12 860-871 41-52 (95)
7 d1g7oa1 a.45.1.1 (A:76-215) Gl 3.5 1.1E+02 0.0079 6.0 5.6 73 74-149 50-129 (140)
8 d2pyqa1 a.279.1.1 (A:1-113) Un 3.0 1.3E+02 0.0097 5.5 3.3 43 281-334 60-104 (113)
9 d1bu2a2 a.74.1.1 (A:149-250) V 3.0 1.3E+02 0.0097 5.5 2.0 20 1393-1412 16-35 (102)
10 d1bm9a_ a.4.5.7 (A:) Replicati 2.9 1.4E+02 0.01 5.3 4.6 41 1130-1172 17-60 (120)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.61 E-value=20 Score=11.01 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.9
Q ss_pred HCCHHHHHHHHHH
Q ss_conf 0260358999863
Q 000368 771 KVGVTPLVLEIVN 783 (1611)
Q Consensus 771 a~g~l~~LLEilS 783 (1611)
.|+...-++|+++
T Consensus 22 dw~~il~icD~I~ 34 (145)
T d1dvpa1 22 DWPSILLICDEIN 34 (145)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999995
No 2
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=93 Score=6.50 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983114689888930001003999988999568999999998600444446898888665566788999988778
Q 000368 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1260 (1611)
Q Consensus 1181 kLV~~ILg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~LI~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~ 1260 (1611)
.++..++-+.+...-.+.+...++....+ .-..|..|+..|+.+...+. ...|....
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~-----------~~id~~I~----------- 67 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT-----------AYLDGLMK----------- 67 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHH-----------HHHHHHHT-----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-----------
T ss_conf 99999999998369999999999988345-43145899999999999837-----------88999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCC-CCHHHHHHHHHHHHHC
Q ss_conf 99998888894212379973036665300100101588-8978999888876440
Q 000368 1261 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 1314 (1611)
Q Consensus 1261 ~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLP-vsp~~Vv~aLIdvvv~ 1314 (1611)
.+ .+|.+...+ +--.+++ ..++.||+-++ +|+..+++.-|+++-+
T Consensus 68 ----~~--l~~~~~r~~-~~~~~IL--r~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 68 ----PY--LSRLLEELG-QVEKAVL--RIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp ----TC--CCSCTTTSC-HHHHHHH--HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred ----HH--HHHHHHHCC-HHHHHHH--HHHHHHHHHCCCCCCEEHHHHHHHHHHH
T ss_conf ----98--886487537-6789999--9999999971377761259999999999
No 3
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.80 E-value=99 Score=6.33 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2666799899999
Q 000368 517 GCIDFVDFVDKLV 529 (1611)
Q Consensus 517 ~~~df~~fi~kL~ 529 (1611)
|.|||.+||..|+
T Consensus 92 g~I~f~efv~~LS 104 (118)
T d1tuza_ 92 DVVCLNDVSCYFS 104 (118)
T ss_dssp CCEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHH
T ss_conf 6461999999999
No 4
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=3.79 E-value=80 Score=6.96 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=8.8
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 98765432237888612
Q 000368 101 SVLISMVVQCCSHVPRA 117 (1611)
Q Consensus 101 ~~~~~~~~qc~~h~p~~ 117 (1611)
.-=|.|.+|||-|--||
T Consensus 63 ~~gi~lA~Q~CEHlNRA 79 (193)
T d1v8da_ 63 ERGVHVAVQACEHLNRA 79 (193)
T ss_dssp TTTCEEEEECCGGGTTC
T ss_pred HCCEEEEEECHHHHHHH
T ss_conf 51808987345565788
No 5
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=3.75 E-value=1e+02 Score=6.28 Aligned_cols=56 Identities=32% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHC--------CCCCCCCC--CCC--CCCHHHHHHCCCCCEEEEEECCC
Q ss_conf 7785410143000001344400--------24457899--999--72112232302452479864032
Q 000368 557 LVMGALNSDSRKVETTRKILSF--------HREDRCTD--PNN--PQSILLDFISSCQNLRIWSLNTS 612 (1611)
Q Consensus 557 ~v~~~~~~~~~~v~t~~~ilsf--------~~~d~~~d--~n~--pqs~~~df~~s~q~l~iw~~n~~ 612 (1611)
+-+++|+-|.--||++|-++-| |+.+-+-+ -|. |||--|--.+++.--||.+=|.+
T Consensus 66 LGTTLLNLD~NYVe~aR~~Idy~~~Fid~VC~DEivREsqRNG~~PQS~~L~~Ls~~kfk~Inf~NsS 133 (213)
T d1qhda1 66 LGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSS 133 (213)
T ss_dssp CCCCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTTSCCSHHHHHHTSGGGGGGCCCCCS
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 01211146268888888899999999998737999999873688999878999853542476447806
No 6
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.60 E-value=1.1e+02 Score=6.14 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999775254
Q 000368 860 IALAIIIKTRGI 871 (1611)
Q Consensus 860 LTLARsiKitGi 871 (1611)
.-|++++.+.|+
T Consensus 41 ~h~~nAi~Vc~q 52 (95)
T d1om2a_ 41 DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998278
No 7
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=3.51 E-value=1.1e+02 Score=6.05 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHHH---CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86023212999860099946776777998765---4322---37888612479999-99864205434310178996554
Q 000368 74 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLIS---MVVQ---CCSHVPRAEFILFA-LRSLCSIGYINWDTFLPSLLSSV 146 (1611)
Q Consensus 74 ~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~---~~~q---c~~h~p~~~fll~~-~~~l~~~~~~~~d~~l~~~~~~~ 146 (1611)
|.|+++.||+++..+-+ |+-.--|..|-- ++.. +.+.---.|+++|. ||+|+..--|.|++=+-..+..+
T Consensus 50 kKe~~~g~f~~~l~~t~---~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~ 126 (140)
T d1g7oa1 50 KKEASAGNFADLLAHSD---GLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNM 126 (140)
T ss_dssp TTTTTCTHHHHHHHHHH---HHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66641179999987579---999999999999999982735558876699999999986457516787888899999999
Q ss_pred HHH
Q ss_conf 320
Q 000368 147 SSA 149 (1611)
Q Consensus 147 ~~~ 149 (1611)
|..
T Consensus 127 s~~ 129 (140)
T d1g7oa1 127 AKQ 129 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 8
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=2.98 E-value=1.3e+02 Score=5.47 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHC
Q ss_conf 71001124877567864410157999999889998887--5399765416998620
Q 000368 281 VTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLL--VDEDRCRVPFYELLRT 334 (1611)
Q Consensus 281 ~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~c~~vi~~l--v~e~~~rvpfy~l~~~ 334 (1611)
.||=.+-.|+.|++ +-...--.|+=.. -+-+|+|+.||-||--
T Consensus 60 ~nfl~KKLGl~D~~-----------~ld~aI~~V~e~~g~s~r~K~R~~~YYllak 104 (113)
T d2pyqa1 60 KNFLMKKLGLADSE-----------SLMGGIQSVIETYGRSERNKYRAVVYYMLTK 104 (113)
T ss_dssp HHTTTTTSCCCSSH-----------HHHHHHHHHHHHHCTTCSCCBHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCH-----------HHHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
T ss_conf 80899970899748-----------7999999999997035577530220678788
No 9
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=2.98 E-value=1.3e+02 Score=5.46 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 19935799999999998605
Q 000368 1393 QLPPDFHMQLYMEASRIIKE 1412 (1611)
Q Consensus 1393 aLP~~f~~~ly~ei~~vik~ 1412 (1611)
..|++||-++|+.....|+.
T Consensus 16 kipe~~wpql~e~~s~tick 35 (102)
T d1bu2a2 16 KIPEDLWPQLYEAASTTICK 35 (102)
T ss_dssp TCCTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 69677849999998999999
No 10
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=2.87 E-value=1.4e+02 Score=5.34 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 5699999870583---114999999720000038764044667698
Q 000368 1130 IPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSFVRDILA 1172 (1611)
Q Consensus 1130 iDiVIhR~LE~~~---~k~letLL~~lg~LYkYHd~PvTFlY~tLh 1172 (1611)
+-+++.+.+|++. .++++-|=+-|+| |-||| |-|=+|.+||
T Consensus 17 lKlYlit~~eq~r~YG~q~L~~Lr~eFk~-~Gy~P-~hsEiYraLH 60 (120)
T d1bm9a_ 17 LKLYMITMTEQERLYGLKLLEVLRSEFKE-IGFKP-NHTEVYRSLH 60 (120)
T ss_dssp HHHHHHHHHHTTCCBSTTHHHHHHHHHTT-TTCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCC-CHHHHHHHHH
T ss_conf 87654110350211279999999998785-38899-7789999999
Done!