BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000369
(1610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9
Length = 266
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 134/248 (54%), Gaps = 1/248 (0%)
Query: 1139 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL 1198
KE+++ +V+ + F+ P E I +L+ + + L +L DFK+ + L+ L +
Sbjct: 16 KEEKQLKLVK-WNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLA 74
Query: 1199 PSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFL 1258
+ + ++ D+LL+W L+F ++N L+KVLE + + +RD +++ E + F+
Sbjct: 75 DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134
Query: 1259 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318
P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+ ++ +
Sbjct: 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194
Query: 1319 IDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
I + G L + VA ++D +R AA+N L +K G+ +W+ G++ D K
Sbjct: 195 ITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDK 254
Query: 1379 SMLDDRFK 1386
S++++R K
Sbjct: 255 SLVEERIK 262
>pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215 And Eb1
Length = 242
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 6/228 (2%)
Query: 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKK 332
+L+DPVDIL+ K F++ ++ KW+ RK+++ L KL + ++ G++ + LKK
Sbjct: 5 DLLDPVDILSKXPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKK 63
Query: 333 LIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQ 391
+IT D N+ + A + + LA+GL FS + V +L + +
Sbjct: 64 VITKDSNVVLVAXAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 392 AMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI-ETSSKAAVLKVHKDYVPIC 450
A++ + L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 124 AIYASTSLEAQQ--ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
++ LN+ P VRD++ L + K G + + + +D ++ K+ E
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLXGDKAVTPLLADVDPLKXAKIKE 229
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DS 907
DI K LE W +R ES+E + K+L + + +++ G L L+ + DS
Sbjct: 11 DILSKXPKDFYDKLEEKKWTLRKESLEVLEKLLTD-HPKLENGEYGALVSALKKVITKDS 69
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967
N LV L +A + + + +L+ + K ++ +DA A+
Sbjct: 70 NVVLVAXAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLF 994
L+ + +L++ + LF
Sbjct: 130 SLEAQQESIVESLSNKNPSVKSETALF 156
>pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 278
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---PLFKKTVADSNAPVQ 69
P E+RL +K WK R EA +L L +S+ D +D+ I+ LF + + DSN Q
Sbjct: 13 PLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQ 72
Query: 70 DKALDALIAYLKAADADAGRYAKEV------CDAIAAKCLT-GRPKTVEKAQAVFMLWVE 122
++A+ AL + + A + + + A + + K LT R T ++ + +
Sbjct: 73 EQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132
Query: 123 L-----EAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQ-ALSEFGAKIIPPKRILKMLPEL 176
L ++V++ + E ++M L+ + P+ +LK +P+L
Sbjct: 133 LDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE-LLKHVPQL 191
Query: 177 FDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMKKELE 221
H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 192 AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
>pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 249
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 19/228 (8%)
Query: 290 FWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVE 344
F E + ++KW +R +A+ E + L+ TK++ +++ + +I D NI
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 345 AIQAIGNLARGLRTHFSGSSR----FXXXXXXXXXXXXXXTVAESLTQTLQAMHK----- 395
A Q++ + L+T G S+ +V E++ + L + K
Sbjct: 81 AAQSVELICDKLKT--PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 396 AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI--ETSSKAAVLKVHKD-YVPICME 452
A D ++D+ K+K P +R E + + + KD VPI ++
Sbjct: 139 ASSGRNEDXLKDILEHXKHKTPQIRXECTQLFNASXKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
+ND P +R F A + K G +++E LD+++R K+ E +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGXNTFVKTLEHLDNLKRKKIEETV 246
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + +
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA------ 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLSTCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGSILE 395
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 26 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 85
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 86 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 136
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + +
Sbjct: 137 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA------ 190
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 191 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 242
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 243 LPFIKEHIKNPDWRYRDAAVMAFGCILE 270
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + +
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA------ 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + KF
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE---HTSKFYA--- 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + +
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA------ 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + KF
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE---HTSKFYA--- 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 27/268 (10%)
Query: 619 LEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFP 678
LEAI + Q ++ Q D+S EIL ++ + N N L T F
Sbjct: 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210
Query: 679 KKC---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
K+ ++ ++ + + D + R A++ L I Y+ M+ + P +
Sbjct: 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPALF 261
Query: 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
+ I M S +++ + ++ ++ D D +++S AA + + +
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA------ 315
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGKF 854
KG L + P L L + ++N + P K +DI
Sbjct: 316 KGALQYLVPILTQTLTKQ-DENDDDDDWNPCKAAGVCLMLLATCC-------EDDIVPHV 367
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILE 882
P + + +++PDW+ R ++ A ILE
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497
VL VHK Y + M N+ DA F +AA+ K+ G ++ K+ +K
Sbjct: 353 TVLDVHKKYNALVMSAFNN------DAGF--VAALDKACGRFINNNAVTKMAQ-SSSKSP 403
Query: 498 EMIAGSGGDVATGTS----SARVQTSGGSVPSV--EASESSFVRKSAASMLSGKRPVSAA 551
E++A + +S A ++ + V V + +K A ML+ KR V
Sbjct: 404 ELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA-KRLVHQN 462
Query: 552 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD---TVG 608
AS S K G + TSKL +D+ S+ E+ + L + P D ++
Sbjct: 463 SASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQ 522
Query: 609 QLKSAVW 615
L S W
Sbjct: 523 VLSSGSW 529
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497
VL VHK Y + M N+ DA F +AA+ K+ G ++ K+ +K
Sbjct: 369 TVLDVHKKYNALVMSAFNN------DAGF--VAALDKACGRFINNNAVTKMAQ-SSSKSP 419
Query: 498 EMIAGSGGDVATGTS----SARVQTSGGSVPSV--EASESSFVRKSAASMLSGKRPVSAA 551
E++A + +S A ++ + V V + +K A ML+ KR V
Sbjct: 420 ELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA-KRLVHQN 478
Query: 552 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD---TVG 608
AS S K G + TSKL +D+ S+ E+ + L + P D ++
Sbjct: 479 SASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQ 538
Query: 609 QLKSAVW 615
L S W
Sbjct: 539 VLSSGSW 545
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
pdb|2QGS|B Chain B, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
Length = 225
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 1475 SPEQSVEGMKVVCHELAQA--TNDPEGSVMDELVKDADRLVSCLANKVAKTFDFS 1527
S E S + + ++ H +A N + S+ E+V+DADRL + A +A+TF FS
Sbjct: 86 SSEISQQVLYIIKHXSYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFS 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,980,825
Number of Sequences: 62578
Number of extensions: 1549854
Number of successful extensions: 4549
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4520
Number of HSP's gapped (non-prelim): 37
length of query: 1610
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1498
effective length of database: 7,964,601
effective search space: 11930972298
effective search space used: 11930972298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)