Query 000369
Match_columns 1610
No_of_seqs 403 out of 1385
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 3.4E-52 7.3E-57 523.9 36.1 747 606-1391 10-794 (815)
2 KOG1820 Microtubule-associated 100.0 2.3E-43 5E-48 444.2 42.1 749 19-817 13-792 (815)
3 KOG1824 TATA-binding protein-i 99.9 3.9E-22 8.5E-27 241.8 60.6 927 15-1039 9-1131(1233)
4 KOG2171 Karyopherin (importin) 99.9 2.3E-16 5E-21 199.6 69.5 878 49-1067 115-1073(1075)
5 PF12348 CLASP_N: CLASP N term 99.9 1.4E-21 3.1E-26 222.6 19.4 211 284-497 7-228 (228)
6 KOG2171 Karyopherin (importin) 99.9 2.5E-15 5.4E-20 190.3 71.5 839 290-1381 9-935 (1075)
7 PF12348 CLASP_N: CLASP N term 99.8 8.7E-18 1.9E-22 191.5 17.9 207 854-1063 8-227 (228)
8 KOG1242 Protein containing ada 99.7 1.2E-14 2.6E-19 174.9 33.0 516 138-816 27-551 (569)
9 KOG1824 TATA-binding protein-i 99.7 4.4E-09 9.5E-14 130.0 73.8 517 341-983 149-746 (1233)
10 KOG2023 Nuclear transport rece 99.6 6.1E-12 1.3E-16 149.7 44.7 691 322-1066 125-882 (885)
11 KOG2956 CLIP-associating prote 99.6 1.9E-13 4.1E-18 158.0 26.1 387 681-1072 60-508 (516)
12 KOG1242 Protein containing ada 99.5 1.7E-11 3.7E-16 148.0 31.1 351 45-481 89-451 (569)
13 KOG0213 Splicing factor 3b, su 99.5 3E-10 6.4E-15 136.3 39.6 569 336-1039 452-1063(1172)
14 KOG0915 Uncharacterized conser 99.4 9E-11 1.9E-15 151.2 34.6 574 402-1051 817-1441(1702)
15 PLN03200 cellulose synthase-in 99.4 3.8E-08 8.3E-13 135.6 58.9 772 52-1041 14-860 (2102)
16 KOG2023 Nuclear transport rece 99.4 1.1E-08 2.3E-13 122.6 46.3 675 63-813 138-883 (885)
17 PLN03200 cellulose synthase-in 99.4 2E-07 4.2E-12 128.9 62.9 811 289-1388 17-887 (2102)
18 KOG2956 CLIP-associating prote 99.3 1.5E-09 3.2E-14 126.3 30.0 211 290-503 291-506 (516)
19 KOG0213 Splicing factor 3b, su 99.3 2.5E-07 5.4E-12 111.9 46.1 573 328-1052 514-1118(1172)
20 KOG0212 Uncharacterized conser 99.2 6.7E-09 1.5E-13 122.7 30.8 378 603-1042 2-407 (675)
21 KOG1241 Karyopherin (importin) 99.2 9.7E-08 2.1E-12 116.8 39.0 585 300-1049 145-819 (859)
22 COG5181 HSH155 U2 snRNP splice 99.2 4.3E-08 9.4E-13 116.1 33.9 193 858-1052 693-923 (975)
23 KOG1241 Karyopherin (importin) 99.2 6E-07 1.3E-11 110.1 44.3 629 290-1052 6-721 (859)
24 COG5181 HSH155 U2 snRNP splice 99.1 8E-07 1.7E-11 105.7 40.0 569 127-810 315-972 (975)
25 KOG0915 Uncharacterized conser 99.1 6E-06 1.3E-10 108.0 49.3 285 128-476 818-1112(1702)
26 KOG0212 Uncharacterized conser 99.1 2.1E-07 4.5E-12 110.5 32.4 403 717-1300 42-459 (675)
27 KOG0211 Protein phosphatase 2A 99.0 1.5E-06 3.2E-11 111.4 38.1 559 295-1045 92-668 (759)
28 KOG2933 Uncharacterized conser 98.9 7.3E-09 1.6E-13 115.4 12.7 185 290-476 93-279 (334)
29 KOG1248 Uncharacterized conser 98.8 0.00052 1.1E-08 89.3 49.5 648 321-1058 89-873 (1176)
30 PRK13800 putative oxidoreducta 98.7 1.2E-06 2.6E-11 118.8 27.0 268 687-1037 624-895 (897)
31 KOG1248 Uncharacterized conser 98.7 0.0052 1.1E-07 80.4 60.6 238 761-1053 657-910 (1176)
32 PF01602 Adaptin_N: Adaptin N 98.7 0.00013 2.7E-09 94.4 43.1 503 290-998 9-520 (526)
33 COG5215 KAP95 Karyopherin (imp 98.7 0.00048 1E-08 82.4 41.9 495 330-1006 268-813 (858)
34 PRK13800 putative oxidoreducta 98.7 1.8E-06 3.9E-11 117.2 25.8 242 718-1039 622-865 (897)
35 PF01602 Adaptin_N: Adaptin N 98.7 2.3E-05 4.9E-10 101.3 34.3 453 384-1045 25-487 (526)
36 KOG2933 Uncharacterized conser 98.6 2.7E-07 5.7E-12 103.2 12.7 181 857-1040 92-276 (334)
37 COG5215 KAP95 Karyopherin (imp 98.6 0.001 2.2E-08 79.7 42.3 467 330-968 182-714 (858)
38 PTZ00429 beta-adaptin; Provisi 98.6 0.0018 3.9E-08 84.8 48.7 479 382-1039 49-544 (746)
39 PRK09687 putative lyase; Provi 98.5 1E-05 2.2E-10 94.5 23.8 146 857-1037 132-278 (280)
40 KOG0211 Protein phosphatase 2A 98.5 4.3E-05 9.2E-10 98.4 31.3 293 606-967 360-666 (759)
41 PTZ00429 beta-adaptin; Provisi 98.4 0.002 4.3E-08 84.3 40.3 444 857-1364 36-511 (746)
42 PRK09687 putative lyase; Provi 98.2 2.3E-05 4.9E-10 91.6 14.4 160 288-472 26-186 (280)
43 KOG1060 Vesicle coat complex A 97.7 0.054 1.2E-06 68.1 33.4 86 381-473 51-136 (968)
44 KOG1060 Vesicle coat complex A 97.7 0.013 2.8E-07 73.4 27.8 383 60-472 42-531 (968)
45 PF05004 IFRD: Interferon-rela 97.6 0.0045 9.7E-08 73.5 21.8 190 289-478 47-261 (309)
46 PF10508 Proteasom_PSMB: Prote 97.5 0.19 4.2E-06 64.2 36.2 396 722-1243 43-465 (503)
47 KOG0166 Karyopherin (importin) 97.5 0.0078 1.7E-07 74.0 21.6 331 854-1267 110-458 (514)
48 KOG1943 Beta-tubulin folding c 97.4 1.1 2.3E-05 59.1 43.7 595 325-1069 341-985 (1133)
49 KOG1943 Beta-tubulin folding c 97.4 1.1 2.4E-05 59.0 43.4 500 362-1042 337-882 (1133)
50 KOG1240 Protein kinase contain 97.4 0.014 3E-07 76.3 21.8 304 604-981 425-745 (1431)
51 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0012 2.6E-08 63.9 8.6 93 301-394 2-95 (97)
52 KOG1058 Vesicle coat complex C 97.3 0.059 1.3E-06 67.4 24.8 334 896-1318 100-461 (948)
53 KOG1061 Vesicle coat complex A 97.2 0.3 6.5E-06 62.2 31.0 145 870-1030 332-478 (734)
54 PF10508 Proteasom_PSMB: Prote 97.2 0.14 3E-06 65.4 29.3 302 129-475 78-421 (503)
55 KOG0166 Karyopherin (importin) 97.2 0.089 1.9E-06 65.0 25.6 183 289-476 70-265 (514)
56 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0018 4E-08 62.6 9.1 92 869-962 2-93 (97)
57 KOG2259 Uncharacterized conser 97.1 0.097 2.1E-06 64.8 24.6 274 716-1021 197-492 (823)
58 PF12460 MMS19_C: RNAPII trans 97.0 0.35 7.6E-06 60.4 29.1 191 857-1055 193-407 (415)
59 PF12460 MMS19_C: RNAPII trans 96.9 0.059 1.3E-06 67.2 21.6 191 295-490 200-409 (415)
60 PF12717 Cnd1: non-SMC mitotic 96.8 0.027 5.9E-07 61.5 14.9 130 866-1003 1-140 (178)
61 KOG1061 Vesicle coat complex A 96.8 0.11 2.5E-06 65.9 21.7 365 10-480 120-492 (734)
62 KOG1240 Protein kinase contain 96.7 0.069 1.5E-06 70.1 19.7 274 698-1006 439-729 (1431)
63 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0039 8.4E-08 53.7 5.7 55 417-472 1-55 (55)
64 COG1413 FOG: HEAT repeat [Ener 96.5 0.42 9.1E-06 58.0 24.8 155 865-1052 161-315 (335)
65 PF13646 HEAT_2: HEAT repeats; 96.5 0.017 3.7E-07 54.9 9.9 86 368-470 1-88 (88)
66 PF12717 Cnd1: non-SMC mitotic 96.5 0.074 1.6E-06 58.1 15.8 111 338-456 1-112 (178)
67 KOG1059 Vesicle coat complex A 96.4 0.26 5.6E-06 61.8 21.3 162 288-469 221-396 (877)
68 KOG1062 Vesicle coat complex A 96.4 4.9 0.00011 51.7 36.3 123 348-477 88-211 (866)
69 PF13251 DUF4042: Domain of un 96.4 0.022 4.9E-07 61.6 11.0 138 340-477 1-177 (182)
70 KOG2259 Uncharacterized conser 96.4 0.18 3.9E-06 62.6 19.3 308 362-750 194-514 (823)
71 KOG1020 Sister chromatid cohes 96.4 7.6 0.00016 53.4 39.0 133 908-1041 1185-1368(1692)
72 KOG1062 Vesicle coat complex A 96.4 0.37 8E-06 61.4 22.3 120 325-453 107-227 (866)
73 KOG2032 Uncharacterized conser 96.3 0.099 2.1E-06 63.0 16.5 190 860-1053 224-428 (533)
74 PF02985 HEAT: HEAT repeat; I 96.3 0.0055 1.2E-07 46.0 4.1 30 446-475 1-30 (31)
75 cd00020 ARM Armadillo/beta-cat 96.3 0.031 6.8E-07 56.1 11.0 107 366-473 7-119 (120)
76 PF14500 MMS19_N: Dos2-interac 96.3 1.5 3.3E-05 50.8 25.7 188 299-493 54-256 (262)
77 PF05004 IFRD: Interferon-rela 96.1 0.29 6.3E-06 58.3 19.2 190 591-792 38-261 (309)
78 cd00020 ARM Armadillo/beta-cat 96.0 0.011 2.5E-07 59.3 6.0 108 856-964 10-119 (120)
79 PF13646 HEAT_2: HEAT repeats; 95.9 0.044 9.5E-07 52.0 9.4 86 938-1037 1-88 (88)
80 KOG4535 HEAT and armadillo rep 95.9 0.11 2.5E-06 61.7 14.0 408 19-472 4-460 (728)
81 KOG1077 Vesicle coat complex A 95.9 7.9 0.00017 49.1 30.9 138 291-437 80-221 (938)
82 PF10274 ParcG: Parkin co-regu 95.9 0.047 1E-06 58.7 9.9 119 854-973 39-172 (183)
83 KOG2032 Uncharacterized conser 95.8 0.33 7.2E-06 58.8 17.5 210 290-500 222-442 (533)
84 KOG1059 Vesicle coat complex A 95.8 2.8 6.1E-05 53.1 25.8 245 900-1241 114-366 (877)
85 KOG4535 HEAT and armadillo rep 95.7 5.1 0.00011 48.5 26.1 192 757-965 390-603 (728)
86 PF12231 Rif1_N: Rap1-interact 95.3 7.2 0.00016 48.0 27.8 313 609-964 1-351 (372)
87 PF13513 HEAT_EZ: HEAT-like re 95.3 0.022 4.7E-07 49.1 4.1 54 910-963 2-55 (55)
88 KOG0392 SNF2 family DNA-depend 95.2 0.13 2.9E-06 67.8 12.4 158 911-1071 792-962 (1549)
89 KOG1078 Vesicle coat complex C 95.2 3.5 7.6E-05 52.9 24.0 52 986-1040 479-531 (865)
90 TIGR02270 conserved hypothetic 95.0 1.1 2.4E-05 55.4 19.0 146 856-1039 120-265 (410)
91 COG1413 FOG: HEAT repeat [Ener 94.9 0.45 9.7E-06 57.7 15.8 175 856-1063 46-233 (335)
92 PF02985 HEAT: HEAT repeat; I 94.9 0.037 8E-07 41.5 3.9 29 1014-1042 2-30 (31)
93 KOG1058 Vesicle coat complex C 94.7 17 0.00036 46.8 27.7 357 605-1044 24-428 (948)
94 TIGR02270 conserved hypothetic 94.6 0.28 6E-06 60.6 12.7 119 326-472 87-205 (410)
95 KOG2025 Chromosome condensatio 94.4 0.44 9.5E-06 59.8 13.5 207 849-1069 81-292 (892)
96 PF14500 MMS19_N: Dos2-interac 94.4 12 0.00026 43.6 24.7 188 866-1058 53-254 (262)
97 COG5064 SRP1 Karyopherin (impo 94.1 2.9 6.3E-05 48.3 18.0 302 856-1200 74-399 (526)
98 COG5240 SEC21 Vesicle coat com 94.0 22 0.00047 44.3 35.6 112 344-466 40-158 (898)
99 PF04118 Dopey_N: Dopey, N-ter 94.0 0.92 2E-05 53.6 14.7 166 869-1044 71-254 (307)
100 cd03568 VHS_STAM VHS domain fa 93.8 0.61 1.3E-05 48.9 11.3 98 862-968 13-113 (144)
101 KOG0392 SNF2 family DNA-depend 93.7 0.36 7.9E-06 63.9 11.3 177 300-479 748-930 (1549)
102 COG5096 Vesicle coat complex, 93.7 1.9 4E-05 56.3 17.6 167 294-475 28-196 (757)
103 cd03567 VHS_GGA VHS domain fam 93.6 0.78 1.7E-05 47.7 11.7 98 862-968 14-119 (139)
104 KOG1020 Sister chromatid cohes 93.6 45 0.00097 46.5 53.5 115 359-478 809-925 (1692)
105 KOG4524 Uncharacterized conser 93.5 3.3 7.2E-05 54.3 19.1 84 294-377 812-900 (1014)
106 PF13251 DUF4042: Domain of un 93.3 0.65 1.4E-05 50.5 10.9 133 910-1043 1-176 (182)
107 KOG4524 Uncharacterized conser 93.2 22 0.00049 47.1 25.8 59 912-970 565-623 (1014)
108 COG5218 YCG1 Chromosome conden 93.2 1.7 3.7E-05 53.5 15.0 200 856-1070 94-295 (885)
109 KOG1967 DNA repair/transcripti 93.1 0.43 9.3E-06 61.6 10.4 148 323-473 865-1023(1030)
110 cd03561 VHS VHS domain family; 92.9 0.87 1.9E-05 47.2 11.0 100 862-970 13-117 (133)
111 KOG1077 Vesicle coat complex A 92.6 28 0.00061 44.5 24.4 299 101-435 118-436 (938)
112 PF13001 Ecm29: Proteasome sta 92.5 41 0.00089 43.2 33.6 96 357-456 14-113 (501)
113 PF00790 VHS: VHS domain; Int 92.3 0.67 1.5E-05 48.5 9.3 107 862-977 18-130 (140)
114 cd03569 VHS_Hrs_Vps27p VHS dom 92.2 1.3 2.8E-05 46.3 11.1 100 862-970 17-119 (142)
115 KOG1525 Sister chromatid cohes 92.1 19 0.00042 50.2 24.7 236 663-966 164-406 (1266)
116 cd00197 VHS_ENTH_ANTH VHS, ENT 92.1 1.5 3.3E-05 44.1 11.2 97 863-964 10-114 (115)
117 smart00288 VHS Domain present 92.0 1.2 2.6E-05 46.1 10.6 98 862-968 13-114 (133)
118 KOG1949 Uncharacterized conser 92.0 5.4 0.00012 50.4 17.3 148 767-964 182-330 (1005)
119 PF12231 Rif1_N: Rap1-interact 91.8 33 0.00071 42.3 24.5 312 20-394 2-351 (372)
120 KOG2160 Armadillo/beta-catenin 91.7 6.1 0.00013 46.8 16.8 179 863-1044 93-285 (342)
121 COG5096 Vesicle coat complex, 91.5 3.2 7E-05 54.2 15.6 185 862-1061 28-218 (757)
122 cd03568 VHS_STAM VHS domain fa 91.4 3.2 6.9E-05 43.6 12.9 82 398-479 32-115 (144)
123 PF12719 Cnd3: Nuclear condens 91.3 2.3 5E-05 50.6 13.6 126 71-196 2-142 (298)
124 PF10274 ParcG: Parkin co-regu 91.1 1.1 2.4E-05 48.4 9.3 90 400-490 35-127 (183)
125 KOG1243 Protein kinase [Genera 90.9 0.7 1.5E-05 58.5 8.6 183 853-1044 330-518 (690)
126 KOG2025 Chromosome condensatio 90.6 11 0.00023 48.1 18.0 177 326-502 86-292 (892)
127 cd03572 ENTH_epsin_related ENT 90.5 1.7 3.7E-05 43.9 9.5 100 861-965 9-119 (122)
128 cd03569 VHS_Hrs_Vps27p VHS dom 90.4 1.3 2.7E-05 46.4 8.9 77 125-201 38-118 (142)
129 KOG0803 Predicted E3 ubiquitin 90.1 3.3 7.1E-05 57.4 14.6 200 857-1057 45-279 (1312)
130 cd03565 VHS_Tom1 VHS domain fa 90.1 2.2 4.7E-05 44.6 10.3 100 862-970 14-120 (141)
131 KOG1243 Protein kinase [Genera 90.1 0.71 1.5E-05 58.5 7.7 109 362-473 326-436 (690)
132 KOG0168 Putative ubiquitin fus 90.1 9.8 0.00021 49.4 17.4 176 298-477 181-367 (1051)
133 PF11865 DUF3385: Domain of un 89.7 2.4 5.2E-05 45.4 10.5 146 321-477 6-160 (160)
134 KOG1967 DNA repair/transcripti 89.7 0.86 1.9E-05 59.0 8.1 113 854-967 910-1026(1030)
135 PF13001 Ecm29: Proteasome sta 89.7 73 0.0016 40.9 25.7 116 927-1043 14-136 (501)
136 PF04118 Dopey_N: Dopey, N-ter 89.1 11 0.00023 44.9 16.1 147 296-480 22-173 (307)
137 KOG4224 Armadillo repeat prote 89.1 4.3 9.3E-05 47.5 12.2 185 854-1042 252-447 (550)
138 PF12719 Cnd3: Nuclear condens 88.8 5.9 0.00013 47.2 14.2 125 351-475 9-144 (298)
139 KOG4653 Uncharacterized conser 88.8 27 0.00059 45.7 20.0 237 719-1044 729-967 (982)
140 COG5218 YCG1 Chromosome conden 88.4 15 0.00033 45.7 16.7 174 329-502 95-294 (885)
141 cd00197 VHS_ENTH_ANTH VHS, ENT 88.0 3.5 7.7E-05 41.4 9.9 88 304-394 19-114 (115)
142 KOG1087 Cytosolic sorting prot 87.9 2.5 5.4E-05 52.6 10.3 107 860-975 12-123 (470)
143 KOG1924 RhoA GTPase effector D 87.9 53 0.0011 42.5 21.2 50 380-432 267-317 (1102)
144 cd03561 VHS VHS domain family; 87.6 9.8 0.00021 39.4 13.1 82 398-479 32-117 (133)
145 PF05804 KAP: Kinesin-associat 87.2 1.1E+02 0.0024 40.7 25.0 127 916-1042 509-650 (708)
146 KOG2160 Armadillo/beta-catenin 87.1 34 0.00073 40.8 18.2 180 295-479 93-287 (342)
147 cd03567 VHS_GGA VHS domain fam 87.0 8.3 0.00018 40.2 12.0 80 399-478 34-120 (139)
148 KOG0168 Putative ubiquitin fus 86.6 28 0.0006 45.5 18.2 181 857-1043 171-366 (1051)
149 KOG4825 Component of synaptic 86.5 6.1 0.00013 47.2 11.7 217 600-819 392-634 (666)
150 KOG1078 Vesicle coat complex C 85.9 1.3E+02 0.0028 39.5 32.6 96 686-787 431-531 (865)
151 KOG0413 Uncharacterized conser 85.6 1.4E+02 0.0031 39.8 35.1 125 910-1042 946-1074(1529)
152 KOG2149 Uncharacterized conser 85.5 14 0.0003 44.5 14.2 111 329-439 62-177 (393)
153 PF08623 TIP120: TATA-binding 85.4 6.2 0.00013 42.4 10.3 91 362-454 5-115 (169)
154 KOG3961 Uncharacterized conser 85.1 4.3 9.2E-05 44.2 8.8 118 854-972 115-246 (262)
155 PF08161 NUC173: NUC173 domain 85.0 3.1 6.6E-05 46.2 8.2 112 909-1021 14-125 (198)
156 COG5240 SEC21 Vesicle coat com 84.9 1.2E+02 0.0026 38.2 24.3 67 715-787 485-554 (898)
157 cd03572 ENTH_epsin_related ENT 84.5 5.2 0.00011 40.5 8.7 74 399-473 34-118 (122)
158 PF10363 DUF2435: Protein of u 84.2 4.1 8.8E-05 39.2 7.5 80 405-486 5-84 (92)
159 KOG4653 Uncharacterized conser 84.2 10 0.00022 49.4 13.0 179 857-1047 731-924 (982)
160 KOG0803 Predicted E3 ubiquitin 83.8 17 0.00037 50.7 15.9 189 291-479 47-268 (1312)
161 KOG0414 Chromosome condensatio 83.8 16 0.00034 49.4 14.8 131 336-475 934-1065(1251)
162 KOG2549 Transcription initiati 83.8 21 0.00046 44.5 15.0 176 860-1045 214-419 (576)
163 PF08506 Cse1: Cse1; InterPro 83.7 9.8 0.00021 46.6 12.5 123 342-469 228-370 (370)
164 COG5116 RPN2 26S proteasome re 83.7 4.6 9.9E-05 49.7 9.2 116 334-460 561-677 (926)
165 PF12830 Nipped-B_C: Sister ch 83.5 3.6 7.9E-05 45.3 8.0 69 129-200 9-77 (187)
166 KOG1525 Sister chromatid cohes 83.4 14 0.0003 51.6 14.7 144 1171-1321 260-406 (1266)
167 PF04826 Arm_2: Armadillo-like 83.1 18 0.00038 41.9 13.6 169 291-464 60-252 (254)
168 PF00790 VHS: VHS domain; Int 83.0 12 0.00026 39.1 11.3 88 399-486 38-130 (140)
169 PF12830 Nipped-B_C: Sister ch 82.9 16 0.00034 40.4 12.6 115 363-477 5-122 (187)
170 smart00288 VHS Domain present 82.8 17 0.00036 37.7 12.1 82 398-479 32-116 (133)
171 PF10521 DUF2454: Protein of u 82.5 16 0.00036 43.0 13.5 137 322-459 116-279 (282)
172 KOG0889 Histone acetyltransfer 82.4 3.6E+02 0.0077 41.9 32.0 169 753-968 979-1158(3550)
173 KOG1949 Uncharacterized conser 82.0 7.5 0.00016 49.2 10.3 139 902-1041 181-331 (1005)
174 PF08064 UME: UME (NUC010) dom 81.4 11 0.00023 37.5 9.6 73 414-489 26-98 (107)
175 PF05918 API5: Apoptosis inhib 81.3 30 0.00065 44.2 15.6 126 324-456 58-189 (556)
176 PF08167 RIX1: rRNA processing 80.8 36 0.00078 36.7 14.2 134 322-489 22-157 (165)
177 KOG2137 Protein kinase [Signal 80.7 23 0.00051 45.7 14.3 106 932-1040 385-495 (700)
178 PF05918 API5: Apoptosis inhib 80.7 18 0.00039 46.2 13.3 132 338-478 35-166 (556)
179 PF11640 TAN: Telomere-length 80.7 14 0.00031 39.3 11.0 93 857-949 8-120 (155)
180 KOG1087 Cytosolic sorting prot 79.7 7.5 0.00016 48.5 9.5 96 294-396 14-113 (470)
181 PLN03076 ARF guanine nucleotid 79.6 58 0.0013 47.6 19.2 182 297-478 1149-1380(1780)
182 PF10363 DUF2435: Protein of u 79.1 9.2 0.0002 36.8 7.9 77 1292-1368 4-80 (92)
183 KOG2011 Sister chromatid cohes 79.1 10 0.00022 51.2 10.8 145 1224-1381 220-378 (1048)
184 KOG2062 26S proteasome regulat 79.0 20 0.00042 46.1 12.6 279 705-1037 402-690 (929)
185 KOG2199 Signal transducing ada 78.8 11 0.00023 44.9 9.6 100 862-970 21-123 (462)
186 PF08167 RIX1: rRNA processing 78.6 12 0.00026 40.4 9.7 103 292-396 32-144 (165)
187 KOG0413 Uncharacterized conser 78.5 9.7 0.00021 49.8 9.9 128 340-475 946-1074(1529)
188 PF14664 RICTOR_N: Rapamycin-i 78.5 1.7E+02 0.0038 35.9 24.4 168 865-1036 80-264 (371)
189 KOG2011 Sister chromatid cohes 77.9 2.9E+02 0.0063 38.1 23.8 132 900-1037 292-431 (1048)
190 KOG2149 Uncharacterized conser 77.8 8.9 0.00019 46.1 8.9 112 856-968 61-173 (393)
191 PF04826 Arm_2: Armadillo-like 77.8 32 0.00069 39.9 13.3 178 297-479 25-210 (254)
192 KOG2549 Transcription initiati 77.6 90 0.0019 39.3 17.4 178 602-792 208-419 (576)
193 cd03565 VHS_Tom1 VHS domain fa 76.5 39 0.00085 35.4 12.4 83 398-480 33-121 (141)
194 PF11698 V-ATPase_H_C: V-ATPas 76.3 16 0.00035 36.8 8.9 79 886-966 35-116 (119)
195 PLN03076 ARF guanine nucleotid 76.1 3.1E+02 0.0067 40.6 24.7 297 604-933 1140-1498(1780)
196 cd08050 TAF6 TATA Binding Prot 75.4 34 0.00073 41.6 13.3 127 862-998 187-336 (343)
197 COG5116 RPN2 26S proteasome re 74.9 22 0.00047 44.1 11.1 132 329-477 520-653 (926)
198 PF01603 B56: Protein phosphat 74.7 64 0.0014 40.3 15.9 204 290-500 138-345 (409)
199 PF05804 KAP: Kinesin-associat 74.4 43 0.00094 44.3 14.7 167 306-476 471-651 (708)
200 KOG2062 26S proteasome regulat 74.1 28 0.00061 44.8 12.1 135 329-478 523-657 (929)
201 KOG0946 ER-Golgi vesicle-tethe 73.5 3.1E+02 0.0067 36.3 24.0 41 758-799 122-162 (970)
202 smart00802 UME Domain in UVSB 72.5 27 0.00059 34.6 9.5 79 894-974 10-92 (107)
203 COG5098 Chromosome condensatio 72.0 31 0.00067 43.9 11.6 77 970-1048 345-422 (1128)
204 PF11698 V-ATPase_H_C: V-ATPas 71.9 19 0.00042 36.3 8.3 71 403-475 43-116 (119)
205 PF05536 Neurochondrin: Neuroc 71.5 3.2E+02 0.0069 35.6 25.9 152 893-1048 96-268 (543)
206 COG5095 TAF6 Transcription ini 70.2 50 0.0011 38.0 11.8 113 1169-1290 197-321 (450)
207 COG5095 TAF6 Transcription ini 70.1 26 0.00056 40.2 9.6 113 358-478 193-320 (450)
208 PF08064 UME: UME (NUC010) dom 70.0 36 0.00077 33.8 9.8 80 895-976 11-94 (107)
209 KOG4224 Armadillo repeat prote 69.4 52 0.0011 38.9 12.0 147 325-473 251-404 (550)
210 PF14228 MOR2-PAG1_mid: Cell m 68.8 66 0.0014 44.9 15.0 72 1208-1285 501-572 (1120)
211 KOG0414 Chromosome condensatio 68.2 4.8E+02 0.01 36.3 60.0 140 893-1040 917-1063(1251)
212 PF08161 NUC173: NUC173 domain 67.9 48 0.001 36.9 11.3 118 329-451 4-123 (198)
213 cd08050 TAF6 TATA Binding Prot 67.5 52 0.0011 40.0 12.5 108 1174-1290 182-302 (343)
214 PF08506 Cse1: Cse1; InterPro 67.5 35 0.00077 41.8 11.1 126 910-1036 226-370 (370)
215 PF12765 Cohesin_HEAT: HEAT re 67.3 5.6 0.00012 32.2 2.9 26 444-469 17-42 (42)
216 COG5098 Chromosome condensatio 67.2 68 0.0015 41.0 13.1 105 332-436 306-419 (1128)
217 PF10521 DUF2454: Protein of u 66.6 47 0.001 39.2 11.7 159 21-181 85-278 (282)
218 PF11640 TAN: Telomere-length 65.8 73 0.0016 33.9 11.9 47 289-335 8-58 (155)
219 KOG1293 Proteins containing ar 65.0 2.9E+02 0.0062 35.8 18.0 132 339-473 391-532 (678)
220 COG5064 SRP1 Karyopherin (impo 63.8 69 0.0015 37.6 11.5 183 289-476 75-271 (526)
221 smart00802 UME Domain in UVSB 63.8 42 0.0009 33.4 8.7 72 415-489 27-98 (107)
222 KOG0567 HEAT repeat-containing 63.5 2.8E+02 0.0062 32.0 17.5 89 894-998 186-276 (289)
223 PF05536 Neurochondrin: Neuroc 63.4 1.1E+02 0.0023 39.8 14.8 173 305-479 77-266 (543)
224 COG5656 SXM1 Importin, protein 63.0 4.8E+02 0.01 34.4 25.5 312 972-1361 461-802 (970)
225 PF12397 U3snoRNP10: U3 small 63.0 29 0.00064 35.1 7.9 83 1290-1375 5-95 (121)
226 KOG4413 26S proteasome regulat 61.9 25 0.00054 40.8 7.6 87 387-473 64-156 (524)
227 PF12765 Cohesin_HEAT: HEAT re 60.4 11 0.00024 30.5 3.3 26 1330-1355 17-42 (42)
228 PF00514 Arm: Armadillo/beta-c 58.7 15 0.00032 29.3 3.9 29 445-473 12-40 (41)
229 KOG2199 Signal transducing ada 57.7 88 0.0019 37.6 11.2 91 399-489 41-133 (462)
230 PF08767 CRM1_C: CRM1 C termin 57.2 2.5E+02 0.0055 33.8 15.7 115 364-478 69-198 (319)
231 PF08623 TIP120: TATA-binding 54.0 81 0.0017 34.1 9.5 74 868-945 42-115 (169)
232 PF14664 RICTOR_N: Rapamycin-i 53.7 3E+02 0.0065 33.9 15.8 170 299-471 82-266 (371)
233 PF11865 DUF3385: Domain of un 53.5 45 0.00098 35.7 7.7 54 913-966 105-158 (160)
234 PF08767 CRM1_C: CRM1 C termin 52.0 1.3E+02 0.0028 36.3 12.1 115 343-458 90-227 (319)
235 PF12074 DUF3554: Domain of un 51.9 1.3E+02 0.0029 36.4 12.5 95 366-460 22-122 (339)
236 KOG0946 ER-Golgi vesicle-tethe 51.8 1.3E+02 0.0028 39.5 12.1 167 289-477 26-198 (970)
237 KOG2022 Nuclear transport rece 51.5 7.7E+02 0.017 33.3 31.1 106 605-713 466-578 (982)
238 PF12783 Sec7_N: Guanine nucle 51.2 83 0.0018 33.9 9.5 100 866-965 35-146 (168)
239 KOG2137 Protein kinase [Signal 51.2 2.9E+02 0.0064 36.2 15.2 147 322-476 345-498 (700)
240 PF12074 DUF3554: Domain of un 50.4 5.4E+02 0.012 31.2 21.2 95 717-814 22-117 (339)
241 PF08045 CDC14: Cell division 49.8 1.5E+02 0.0033 34.2 11.5 88 1276-1364 111-208 (257)
242 KOG1822 Uncharacterized conser 49.5 1.1E+03 0.025 34.7 24.0 296 611-966 813-1128(2067)
243 PF03224 V-ATPase_H_N: V-ATPas 49.2 5.2E+02 0.011 30.9 16.8 155 289-460 109-274 (312)
244 KOG4199 Uncharacterized conser 49.1 4.5E+02 0.0097 31.4 14.8 176 297-482 119-321 (461)
245 PF12243 CTK3: CTD kinase subu 49.0 2.8E+02 0.006 29.1 12.2 106 364-474 6-119 (139)
246 PF01347 Vitellogenin_N: Lipop 48.7 71 0.0015 42.3 10.3 134 325-469 431-584 (618)
247 PF12783 Sec7_N: Guanine nucle 48.6 89 0.0019 33.7 9.2 81 1183-1267 35-125 (168)
248 PF08389 Xpo1: Exportin 1-like 48.2 1.5E+02 0.0033 30.6 10.8 49 417-469 100-148 (148)
249 KOG0891 DNA-dependent protein 47.2 1.4E+03 0.031 35.1 40.8 128 294-439 102-230 (2341)
250 KOG1991 Nuclear transport rece 46.0 9.7E+02 0.021 32.9 34.3 445 16-510 94-608 (1010)
251 PF12333 Ipi1_N: Rix1 complex 45.1 69 0.0015 31.5 6.9 37 401-437 9-45 (102)
252 PF08569 Mo25: Mo25-like; Int 45.0 1.6E+02 0.0034 35.7 11.3 118 289-408 168-295 (335)
253 KOG1837 Uncharacterized conser 44.2 3.8E+02 0.0082 38.3 15.4 79 1292-1370 1539-1621(1621)
254 PF04388 Hamartin: Hamartin pr 44.0 97 0.0021 41.2 10.1 83 1279-1363 56-143 (668)
255 PF01347 Vitellogenin_N: Lipop 43.9 1.6E+02 0.0034 39.1 12.3 150 869-1036 451-617 (618)
256 PF03378 CAS_CSE1: CAS/CSE pro 43.4 2.7E+02 0.0058 35.1 13.3 208 844-1055 14-243 (435)
257 KOG1517 Guanine nucleotide bin 43.3 1.8E+02 0.0039 39.5 11.7 108 894-1003 598-733 (1387)
258 PF08569 Mo25: Mo25-like; Int 40.8 4.1E+02 0.0088 32.3 13.8 130 371-503 169-309 (335)
259 PF11935 DUF3453: Domain of un 40.4 6.2E+02 0.013 29.0 16.2 73 334-434 2-74 (239)
260 smart00638 LPD_N Lipoprotein N 39.6 3E+02 0.0065 36.1 13.8 136 894-1036 392-540 (574)
261 PF04388 Hamartin: Hamartin pr 39.0 4.8E+02 0.01 34.9 15.3 115 366-490 39-155 (668)
262 KOG4825 Component of synaptic 39.0 2.7E+02 0.0059 34.1 11.4 183 16-199 398-599 (666)
263 KOG2753 Uncharacterized conser 38.7 7.6E+02 0.016 29.6 16.5 111 947-1058 117-232 (378)
264 KOG1517 Guanine nucleotide bin 38.5 1.2E+02 0.0025 41.1 9.0 67 410-476 606-673 (1387)
265 KOG1822 Uncharacterized conser 38.4 3.9E+02 0.0084 39.0 14.3 102 334-437 885-993 (2067)
266 smart00582 RPR domain present 38.1 1.8E+02 0.0039 29.2 9.0 100 370-474 4-107 (121)
267 PF10441 Urb2: Urb2/Npa2 famil 38.0 6.4E+02 0.014 28.5 18.4 47 455-501 167-213 (223)
268 cd03562 CID CID (CTD-Interacti 38.0 3.1E+02 0.0068 27.3 10.6 88 378-470 17-104 (114)
269 PF00514 Arm: Armadillo/beta-c 37.7 47 0.001 26.4 3.7 28 1013-1040 13-40 (41)
270 PF03378 CAS_CSE1: CAS/CSE pro 37.6 4.2E+02 0.0092 33.4 13.8 144 894-1044 25-191 (435)
271 PF12530 DUF3730: Protein of u 37.3 6.8E+02 0.015 28.6 15.0 118 338-459 97-217 (234)
272 PF12612 TFCD_C: Tubulin foldi 36.8 6.2E+02 0.013 27.9 13.7 129 23-158 19-159 (193)
273 KOG1837 Uncharacterized conser 36.1 1.5E+02 0.0032 41.9 9.9 70 728-798 1551-1621(1621)
274 PF08389 Xpo1: Exportin 1-like 35.9 1.9E+02 0.0041 29.9 9.1 44 950-997 100-148 (148)
275 PF11701 UNC45-central: Myosin 35.9 74 0.0016 34.0 6.0 127 63-192 16-154 (157)
276 KOG1993 Nuclear transport rece 35.9 1.8E+02 0.0039 38.3 9.9 128 896-1026 527-669 (978)
277 KOG1924 RhoA GTPase effector D 35.8 4.4E+02 0.0095 34.8 13.1 135 288-429 103-260 (1102)
278 PF11841 DUF3361: Domain of un 35.3 5.9E+02 0.013 27.3 14.0 106 381-488 32-145 (160)
279 PF14225 MOR2-PAG1_C: Cell mor 34.7 8E+02 0.017 28.6 16.3 174 295-478 75-258 (262)
280 PF06371 Drf_GBD: Diaphanous G 33.7 48 0.001 36.2 4.3 90 107-196 90-186 (187)
281 PF11935 DUF3453: Domain of un 32.4 8.2E+02 0.018 28.1 15.6 82 896-981 115-210 (239)
282 KOG3961 Uncharacterized conser 32.3 99 0.0021 34.2 6.0 90 289-380 118-212 (262)
283 KOG0567 HEAT repeat-containing 32.3 2.6E+02 0.0056 32.3 9.5 92 937-1040 188-279 (289)
284 KOG2213 Apoptosis inhibitor 5/ 32.2 9.9E+02 0.021 29.3 14.5 161 321-502 25-199 (460)
285 PF03224 V-ATPase_H_N: V-ATPas 31.9 2.1E+02 0.0046 34.2 9.7 72 404-475 106-180 (312)
286 PF11701 UNC45-central: Myosin 31.0 4.1E+02 0.0089 28.3 10.7 124 342-470 22-155 (157)
287 PF11864 DUF3384: Domain of un 30.1 1.2E+03 0.027 29.5 34.6 133 653-787 187-329 (464)
288 PF01603 B56: Protein phosphat 30.0 1.2E+03 0.026 29.2 16.7 199 604-816 136-348 (409)
289 KOG1851 Uncharacterized conser 29.3 5.3E+02 0.012 37.0 13.2 127 852-981 1521-1656(1710)
290 KOG1293 Proteins containing ar 28.8 1.1E+03 0.023 30.9 14.9 152 911-1068 393-558 (678)
291 smart00638 LPD_N Lipoprotein N 28.7 4.3E+02 0.0093 34.6 12.6 134 325-469 393-540 (574)
292 cd00256 VATPase_H VATPase_H, r 28.0 65 0.0014 40.1 4.4 58 139-196 365-424 (429)
293 PF12530 DUF3730: Protein of u 28.0 9.5E+02 0.021 27.4 16.1 128 336-473 12-150 (234)
294 KOG2842 Interferon-related pro 27.8 1.2E+03 0.025 28.7 14.1 180 295-477 70-276 (427)
295 COG5593 Nucleic-acid-binding p 27.4 7.9E+02 0.017 31.0 12.9 104 1256-1387 228-339 (821)
296 PF12030 DUF3517: Domain of un 27.3 6.6E+02 0.014 30.5 12.4 26 171-196 241-266 (337)
297 PF14911 MMS22L_C: S-phase gen 26.8 3.3E+02 0.0071 33.4 9.9 145 1205-1362 63-219 (373)
298 PF01417 ENTH: ENTH domain; I 26.7 3.5E+02 0.0076 27.5 8.9 98 860-963 10-119 (125)
299 KOG3380 Actin-related protein 26.7 3.3E+02 0.0072 28.5 8.3 90 70-162 49-140 (152)
300 KOG1851 Uncharacterized conser 26.3 2.7E+02 0.0059 39.6 9.8 75 402-476 1525-1600(1710)
301 KOG1789 Endocytosis protein RM 25.8 5.6E+02 0.012 35.1 11.8 85 411-497 1820-1908(2235)
302 PF05099 TerB: Tellurite resis 25.3 2.2E+02 0.0047 29.4 7.3 131 1210-1346 3-134 (140)
303 PF11838 ERAP1_C: ERAP1-like C 25.3 1.2E+03 0.025 27.6 15.2 78 298-378 34-119 (324)
304 PF12612 TFCD_C: Tubulin foldi 24.9 4.9E+02 0.011 28.7 10.3 107 362-475 3-117 (193)
305 KOG2050 Puf family RNA-binding 24.7 1.1E+03 0.023 30.6 13.6 122 366-493 285-411 (652)
306 PF01417 ENTH: ENTH domain; I 24.6 3.5E+02 0.0077 27.5 8.5 96 293-393 11-119 (125)
307 PF14225 MOR2-PAG1_C: Cell mor 24.4 1.2E+03 0.025 27.3 15.7 149 321-479 60-222 (262)
308 PF12422 Condensin2nSMC: Conde 24.1 4.2E+02 0.0092 28.1 9.2 117 907-1038 26-145 (152)
309 KOG2759 Vacuolar H+-ATPase V1 24.0 4.8E+02 0.01 32.2 10.3 177 1180-1358 229-436 (442)
310 PF11864 DUF3384: Domain of un 23.9 1.6E+03 0.034 28.6 29.9 59 871-929 274-336 (464)
311 PF09324 DUF1981: Domain of un 23.7 2.7E+02 0.0059 26.4 6.9 68 894-961 16-84 (86)
312 smart00185 ARM Armadillo/beta- 23.7 1.1E+02 0.0023 23.8 3.5 28 446-473 13-40 (41)
313 PF11707 Npa1: Ribosome 60S bi 23.6 7.5E+02 0.016 29.9 12.4 105 54-158 58-189 (330)
314 PF11707 Npa1: Ribosome 60S bi 23.2 1.4E+03 0.03 27.6 15.5 119 869-1001 42-186 (330)
315 PF11841 DUF3361: Domain of un 22.4 6.9E+02 0.015 26.9 10.0 105 951-1055 32-145 (160)
316 PF12397 U3snoRNP10: U3 small 22.3 4.1E+02 0.009 26.7 8.4 72 401-476 4-76 (121)
317 PF05527 DUF758: Domain of unk 22.0 1.1E+03 0.024 26.0 11.7 144 1203-1383 33-183 (186)
318 KOG1566 Conserved protein Mo25 21.9 1.4E+03 0.031 27.3 14.4 222 12-233 21-291 (342)
319 PRK05473 hypothetical protein; 21.9 1.7E+02 0.0036 27.7 4.7 49 1268-1316 16-77 (86)
320 PF06371 Drf_GBD: Diaphanous G 21.6 1E+03 0.022 25.6 13.5 27 1331-1357 158-184 (187)
321 PF12333 Ipi1_N: Rix1 complex 21.5 2.1E+02 0.0046 28.1 5.8 43 437-479 3-45 (102)
322 KOG2973 Uncharacterized conser 21.1 3.1E+02 0.0067 32.4 7.7 69 899-969 7-75 (353)
323 PF14228 MOR2-PAG1_mid: Cell m 21.0 4.3E+02 0.0094 37.3 10.5 82 702-787 490-571 (1120)
324 KOG1848 Uncharacterized conser 20.8 1.2E+03 0.025 33.5 13.8 114 362-475 993-1133(1610)
325 PF11919 DUF3437: Domain of un 20.7 1.3E+02 0.0028 29.0 4.0 76 1306-1382 4-80 (90)
326 TIGR02289 M3_not_pepF oligoend 20.7 1.4E+03 0.03 29.7 14.9 34 1328-1361 141-174 (549)
327 PF04499 SAPS: SIT4 phosphatas 20.3 3.1E+02 0.0068 34.9 8.5 72 958-1042 21-93 (475)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-52 Score=523.89 Aligned_cols=747 Identities=26% Similarity=0.305 Sum_probs=568.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHh-hcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l-~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~ 684 (1610)
....+.++.|+.|.++..++..........+.....+++.. ...++|+..|+++..-.+.++..=..
T Consensus 10 ~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~------------ 77 (815)
T KOG1820|consen 10 TDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRV------------ 77 (815)
T ss_pred cchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccc------------
Confidence 33448889999999999999988777544433333444433 22345777777766555544432111
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000369 685 CLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1610)
Q Consensus 685 il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~ 764 (1610)
.+ ++...+++..+....+...+++.++.. ...|.|+....++..+..++.+||...+.++.+++.+.
T Consensus 78 -------~~-----~~~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~ 144 (815)
T KOG1820|consen 78 -------NI-----RDTKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVG 144 (815)
T ss_pred -------cc-----cCcchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCc
Confidence 11 222222333333333344455555554 47899999999999999999999998888888887776
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhh-cccHHHHHHHHHHHhcCCCC----CCCC----------------
Q 000369 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV---------------- 823 (1610)
Q Consensus 765 ~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~-~lkp~ll~~L~~ef~k~~~~----~~~~---------------- 823 (1610)
.+ . +.+||.++.++++.+|+|.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 145 ~l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~ 220 (815)
T KOG1820|consen 145 SL-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQ 220 (815)
T ss_pred cc-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhc
Confidence 54 3 8899999999999999999999887663 33444555555544443211 0000
Q ss_pred ---CCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHH
Q 000369 824 ---PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1610)
Q Consensus 824 ---p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L 900 (1610)
+.++.+...+....+.+..|.+||+||++++++.|...+.+++|++|+||++.+.+++++....+....++.+...+
T Consensus 221 ~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ 300 (815)
T KOG1820|consen 221 LEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILL 300 (815)
T ss_pred ccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHH
Confidence 00111100000000123457899999999999999999999999999999999999999753234555567888888
Q ss_pred HhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000369 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1610)
Q Consensus 901 ~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L 980 (1610)
+.++.|+|.+|+..|+.+|+.||.+||..|.+|+..++|.|+.+++|+|..+|+++..|+++|+..+++..+.+.+.+++
T Consensus 301 ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 301 KIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEAL 380 (815)
T ss_pred HHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcCChhhHHHHHHHHHHHhccCCCC----CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCC
Q 000369 981 TDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1610)
Q Consensus 981 ~~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~ 1056 (1610)
+++ ||+.|.+++.|+.+++..++.. .....+++.++...+|++.+||++|.+++.++++++|++.+.+++.+++
T Consensus 381 k~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 381 KGK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred cCC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 987 7999999999999999988742 2334555558899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1057 GPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
+..+..+.+-+.+.-.....+.+++++..+.....+..++ ......+++...|.+.+...+ +...+++.+ .+.
T Consensus 459 ~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~~~~-~~~ 536 (815)
T KOG1820|consen 459 KQDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPEAAE-APK 536 (815)
T ss_pred cchhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcchhh-ccc
Confidence 8644444444433211111111122221111000000000 000000111111111110000 011111111 111
Q ss_pred cccCCCChHHHh----hhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHH
Q 000369 1132 LNVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207 (1610)
Q Consensus 1132 ~~~~~~~k~~R~----~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~ 1207 (1610)
. ..+.+++|. +..+.+|++..|..+..+ +|...++......||+.||+.|.++++.++........+..+
T Consensus 537 ~--~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 610 (815)
T KOG1820|consen 537 L--QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTS 610 (815)
T ss_pred c--ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccch
Confidence 1 245566665 456778888877655544 378899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcC
Q 000369 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY 1287 (1610)
Q Consensus 1208 ~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~ 1287 (1610)
+.|+.++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++
T Consensus 611 ~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 611 IQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred HHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHH
Q 000369 1288 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (1610)
Q Consensus 1288 ~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~ 1367 (1610)
...+.+|++.+++..||.++|.||+..+..++..-|.+...-.+.+..++....+.|..+|+++.+++...|.+.|+.+|
T Consensus 691 s~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (815)
T KOG1820|consen 691 SVLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSW 770 (815)
T ss_pred cccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHH
Confidence 99999999999999999999999999999999999998755567789999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhhhh
Q 000369 1368 RYVGKLTDAQKSMLDDRFKWKVRE 1391 (1610)
Q Consensus 1368 ~~~g~l~~~~~~~l~er~kr~~~~ 1391 (1610)
++.+.+.+.++++++.+|++..+.
T Consensus 771 ~~~~~~~~~~~s~~~~~~~~~~~~ 794 (815)
T KOG1820|consen 771 KISILQADTDKSRIEKMFPKERRE 794 (815)
T ss_pred HHHHHhhHHHhhhHHHhcCccccc
Confidence 999999999999999999997663
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-43 Score=444.24 Aligned_cols=749 Identities=19% Similarity=0.232 Sum_probs=502.2
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHH
Q 000369 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDA 97 (1610)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~-~~~v~~~ 97 (1610)
++..+.|+.|.++|.. ++.|+|...|+.+ .++..|....+.....- ....+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3778888888877764 4567788899999 88888887765422211 2223444
Q ss_pred HHhhhcCC-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhh
Q 000369 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1610)
Q Consensus 98 lveK~l~~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~l 176 (1610)
..++||.. ++.+++...++++.+...+..+.+++.+...+.-|.||..++++..+..++.+||...++++.+++.+..+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 56777774 78889999999888877788899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCcccchhhhhHhhhhhccccCCC
Q 000369 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1610)
Q Consensus 177 l~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~-~~p~r~~rs~~~~~~~~~a~~~~~~ 255 (1610)
+ |++||.++..++++||||+|.. ++.+++..-.+.++.++...+.+.... ....+..-+.+..........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999985 666665444455555555444332211 0011111111100000000000000
Q ss_pred CCCC--CCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHH
Q 000369 256 PGPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1610)
Q Consensus 256 ~~~~--~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~k--i~~~~~~~l~~~L~ 331 (1610)
.... ..........+|.||+++++||+++++ .+|...+.++||++|+|||+.+..++..++ +..+.++.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 0000 001111122379999999999999999 589999999999999999999999886655 44455556666666
Q ss_pred HHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHH
Q 000369 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1610)
Q Consensus 332 ~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~ 411 (1610)
.+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|++++|+|..+++++..|+++++.. +++.++++.|..+
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 66679999999999999999999999999999999999999999999999999999999999984 8999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHHHhCChh-HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccH
Q 000369 412 VKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1610)
Q Consensus 412 l~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~ 490 (1610)
+++|||++|.+|..|+.+++...++. .....++.++|.+++..+|++++||.+|.++++++++++|++.++.++..+++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999988743 23355789999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcch-hhhhhhccccCCCCCCCCCCCCCCCCCCC-CCCC---
Q 000369 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVK-PSAK--- 565 (1610)
Q Consensus 491 ~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P~~~~~~~~~~~~~~-~~~~--- 565 (1610)
.-++.+.|.+...-.......++..+ ..++-+... .++...+ ..+.++... .++.|++ +.+.
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a-------~~~~~~~~~~~~~~~~~---~~~~~p~~~---~a~vps~~ss~~~~~ 526 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSA-------PDPQVEKLKKVVKVGLS---NFSGLPKNS---AASVPSKLSSANSSR 526 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCC-------CCccccccceecccccc---cCCCCCCCc---cccCCCccccccccc
Confidence 64555555443210000000000000 000000000 0000000 000000000 0001110 0000
Q ss_pred --CC--CCCCCc-CCcCCCCCC-----CCCCCC-CCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccc
Q 000369 566 --KD--GSGKQE-TSKLTEAPE-----DVEPSE-MSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1610)
Q Consensus 566 --~~--~~~~~~-~s~~~~~~~-----~~~~~~-~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~ 634 (1610)
+. +.+... .++...... .+.... ...++..+.....++......+.+.+.+.-.++++.+.....+...
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~ 606 (815)
T KOG1820|consen 527 KIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSK 606 (815)
T ss_pred CCcchhhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhccccc
Confidence 00 000000 000000000 000001 1123444334455667777888999999999999998866544222
Q ss_pred c-chhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhccch--hhHHHHHHHH
Q 000369 635 L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLT 707 (1610)
Q Consensus 635 ~-~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~----~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~ 707 (1610)
. ......++.|+. -+|.|+|..+....++++......... ......-...+.+..+.|..+ .+..-..+..
T Consensus 607 ~~~~~~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~ 684 (815)
T KOG1820|consen 607 EYTSIQDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISE 684 (815)
T ss_pred ccchHHhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhh
Confidence 2 122345666764 368999999999888888765543211 010001111122222444432 2333334444
Q ss_pred HHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 708 ~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
...++.+.......+.+.+ ..++-..|.+++..+...+..-|...+............ ..+.+..+|..+..++...|
T Consensus 685 ~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 762 (815)
T KOG1820|consen 685 ASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPF 762 (815)
T ss_pred hhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhccccccc
Confidence 5555566555666666665 788888999999888887776666543322233333333 67788999999999999999
Q ss_pred hhhChhHHHhhhcccHHHHHHHHHHHhcCC
Q 000369 788 KFVGPDIKGFLADVKPALLSALDAEYEKNP 817 (1610)
Q Consensus 788 ~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~ 817 (1610)
.+.|.....+.....+.+...++++|.+-.
T Consensus 763 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 763 DFLPDPSWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred ccccchHHHHHHHhhHHHhhhHHHhcCccc
Confidence 999999988888888899999999987653
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=3.9e-22 Score=241.82 Aligned_cols=927 Identities=16% Similarity=0.181 Sum_probs=534.3
Q ss_pred ChhhhhcCCchhHHHHHHHHHHHHhhccCCC-CchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000369 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDP-KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1610)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~~~-~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~ 93 (1610)
-|.|++++++-..|..|..+|.+.++...-. ++..+.+....+-|.+.|+|..||..|+.|+..++...+.. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 5789999999999999999999999753211 11224566777889999999999999999999999776552 2344
Q ss_pred HHHHHHhhhcCCChhhHH-HHHHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000369 94 VCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (1610)
Q Consensus 94 v~~~lveK~l~~k~~~k~-~a~~~ll~~~e~~------~~~~v~~~L~~~l~~KnpK------v~~~~l~~l~~~l~~fG 160 (1610)
++..|..+.+.++.+.|+ .++.+.+...++. -...|+..+++.+..-+.+ +...+++.+...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 555555555777888888 5677778777774 1246788888777766665 99999999999999999
Q ss_pred CCCcChh-hHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHHHh---c---CC
Q 000369 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVELVN---V---SG 229 (1610)
Q Consensus 161 ~~~~~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~---~l~~~l-k~~q~kele~~f~~---~---~~ 229 (1610)
.-..+.. .+++.+..-++.....||..|+.++..+..+.+.++... .|.++| ++.|..++...+.- + .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9666654 478888888999999999999999999988887654322 222333 23333333332221 1 11
Q ss_pred C--------CCC--cccchhhhh--Hh---------------hhhhc--------------cccCCCCCCCC-CCC-CCC
Q 000369 230 T--------ARP--TRKIRAEQD--KE---------------LGQEL--------------ISEDVGPGPSE-EST-ADV 266 (1610)
Q Consensus 230 ~--------~~p--~r~~rs~~~--~~---------------~~~~a--------------~~~~~~~~~~~-~~~-~~~ 266 (1610)
. ..| ..|..+.+. .+ -+.+- -+=.++-..+. +++ +..
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~ 325 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF 325 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh
Confidence 0 011 011100000 00 00000 00000000000 000 000
Q ss_pred CCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHH
Q 000369 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEA 345 (1610)
Q Consensus 267 ~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A 345 (1610)
.+|.+.|+. ++-|+.-++-.|+.|++|++.+..++ +...+.+.-|..+...|..+++|---+|....
T Consensus 326 ~ed~eDde~------------~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 326 LEDEEDDEQ------------DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred hhccccchh------------ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHH
Confidence 011111110 12333445667999999999999976 55555566677888889999997777777777
Q ss_pred HHHHHHHHHHhhh----------------cch-hh----hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCC
Q 000369 346 IQAIGNLARGLRT----------------HFS-GS----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLN 400 (1610)
Q Consensus 346 ~~~i~~La~~L~~----------------~f~-~~----~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~----~~~~ 400 (1610)
+++.-.+.+..+. .|+ .+ ...++..+=+.+++++...+.....-|..++.. ...+
T Consensus 394 f~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhc
Confidence 7777776654332 121 22 334555555556666655666666666666654 1244
Q ss_pred hHhhHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 401 LVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 401 l~~vl~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+..++|.|.-.+.+|+ .+.|..++.|+...+..+++..+.++++.+.|.+..++.|+.+.|-..|.-....+.+++..
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 5677888888888887 68999999999999999999999999999999999999999999988888888888877653
Q ss_pred h------hHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCC--CCCCC
Q 000369 479 R------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK--RPVSA 550 (1610)
Q Consensus 479 ~------~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~--~P~~~ 550 (1610)
. ...+++..+-....++++..... -.|+.-+-+-++.. .-...
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~D-----------------------------qeVkeraIscmgq~i~~fgD~ 604 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSD-----------------------------QEVKERAISCMGQIIANFGDF 604 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhccccc-----------------------------HHHHHHHHHHHHHHHHHHhhh
Confidence 1 13455555554444444321000 00000000000000 00000
Q ss_pred CCCCCCCCCCCCCCC-----CCCC--CCCcC-CcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHH
Q 000369 551 APASKKGGPVKPSAK-----KDGS--GKQET-SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAI 622 (1610)
Q Consensus 551 ~~~~~~~~~~~~~~~-----~~~~--~~~~~-s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~ 622 (1610)
-+ .--+..- .-+. .+..+ +..+... ..+..++.. ....++ -+++..-|.-.+-+-|++.+
T Consensus 605 ----l~--~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia--~S~l~i~l~---~~l~~i-l~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 605 ----LG--NELPRTLPILLERLGNEITRLTAVKALTLIA--MSPLDIDLS---PVLTEI-LPELASFLRKNQRALRLATL 672 (1233)
T ss_pred ----hh--hhhHHHHHHHHHHHhchhHHHHHHHHHHHHH--hccceeehh---hhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0000 00000 0000000 000000100 000000 02333333333444555555
Q ss_pred HHHHHHHHhccccchhHHHHHHHhhcCCC-CCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchhhHH
Q 000369 623 SSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAH 701 (1610)
Q Consensus 623 ~~L~~~~~~~~~~~~~~~~lv~~l~~~p~-~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~ 701 (1610)
..+...++...... ..+.+--.|...|+ +.|+..++.+.++.++..++...+...-...+.+++.++.-+..+-++..
T Consensus 673 ~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 673 TALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch
Confidence 55555555432211 11222222222233 57899999999999999988765443233445667777766666655555
Q ss_pred HHHHHHHHHhhh----Chhh----------------------------------------------HHHHHHhhhhc-CC
Q 000369 702 AMKCLTTFSEAV----GPGF----------------------------------------------IFERLYKIMKD-HK 730 (1610)
Q Consensus 702 a~~~L~~l~e~~----~~~~----------------------------------------------v~~~l~~~l~~-~k 730 (1610)
+..++..+.++. .++. +...+...+.+ +.
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 554444443321 0110 01111111000 11
Q ss_pred CHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHH
Q 000369 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810 (1610)
Q Consensus 731 npKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~ 810 (1610)
+-.++.-++-.+.++-..++. .....+-..+..+ |++++.+|+.||...+|.+.. |. +..|| |-++.+|+
T Consensus 832 ~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~ 901 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIE 901 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHh
Confidence 112222222222222111111 1123444556676 999999999999999999863 32 22222 22333332
Q ss_pred HH----------HhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHH
Q 000369 811 AE----------YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKI 880 (1610)
Q Consensus 811 ~e----------f~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~l 880 (1610)
.+ |..+- .+++ . +-..|- ..+|..-|++.++..+--.|.-..|+++.+
T Consensus 902 sqpk~QyLLLhSlkevi-----------~~~s----v----d~~~~~---v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 902 SQPKRQYLLLHSLKEVI-----------VSAS----V----DGLKPY---VEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred cchHhHHHHHHHHHHHH-----------HHhc----c----chhhhh---HHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 21 11100 0000 0 000111 112445566667766666788888889888
Q ss_pred HHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000369 881 LEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1610)
Q Consensus 881 l~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL 960 (1610)
+.- . -..|.+.|+.++....++.+..++..+......-...++++.+..+..++..+.|....||+.|..++
T Consensus 960 ~l~-----e---pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 960 VLI-----E---PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HhC-----C---hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 752 2 27799999999987777888888888888888778889999999999999999999999999999999
Q ss_pred HHHHHhcC--chhhHHHHHHHHhcCc-C-------------------ChhhHHHHHHHHHHHhccCCCCCchhhhHHHHH
Q 000369 961 DAWLAAVH--LDKMVPYVTTALTDAK-L-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS 1018 (1610)
Q Consensus 961 ~~~~~~~~--l~~ll~~l~~~L~~~~-~-------------------~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~ 1018 (1610)
++.+++-+ +..++|.+.+.|.+.. + .-+.|+.+++.+..+++..-..-+..+++..+.
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~ 1111 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVE 1111 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 99998866 5678888887776431 0 112566666666655555443344455555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHH
Q 000369 1019 IAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
.+|+|. .|++--..-.+..+
T Consensus 1112 ~GL~Dh-ydiKmlt~l~l~rL 1131 (1233)
T KOG1824|consen 1112 DGLEDH-YDIKMLTFLMLARL 1131 (1233)
T ss_pred hhcchh-hHHHHHHHHHHHHH
Confidence 566664 55554444443333
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-16 Score=199.58 Aligned_cols=878 Identities=16% Similarity=0.158 Sum_probs=471.2
Q ss_pred hhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhhh-
Q 000369 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEA- 125 (1610)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~--~k~~~k~~a~~~ll~~~e~~~- 125 (1610)
.|.+...++-..+++.|..-+|.||-.|..+....+.....+..++. .+..+|++ +.+ +|-.|...+..|++...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777888888999999999999999999988887665555555444 56688898 456 99988888888876531
Q ss_pred -hh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhhHHHhhhhhhCCC--CHHHHHHHHH
Q 000369 126 -VD--VFLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (1610)
Q Consensus 126 -~~--~v~~~L~~--------~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (1610)
.. .-+..+++ ....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 21 11223333 33445556678888888888877654 222 345666666667665 6779999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCC--CCCCCCCCC
Q 000369 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG--PSEESTADV 266 (1610)
Q Consensus 191 l~~ely~~lG~~~~~~--~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 266 (1610)
+++.+-.+ .+...|. .+...|-++.++...+. ..++ .+++.. ++
T Consensus 272 ~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~------------------------------~~D~ew~~~d~~-de 319 (1075)
T KOG2171|consen 272 FLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEE------------------------------EDDDEWSNEDDL-DE 319 (1075)
T ss_pred HHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCc------------------------------ccchhhcccccc-cc
Confidence 99999888 2211110 01111222221111000 0000 000000 01
Q ss_pred CCCCCCccC-----------CCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHc
Q 000369 267 PPEIDEYEL-----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLI 334 (1610)
Q Consensus 267 ~~~id~~d~-----------~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l 334 (1610)
+++-+||.+ +++..|+..+= +.+...+.+.+|++|++||..|..+. ..++...+.+..|++.+...+
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 111223322 12222222221 33445678999999999999999988 345555567889999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhhHH
Q 000369 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVE 406 (1610)
Q Consensus 335 ~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp-~Ll~klkdk-k~~V~~aa~~al~ai~~~~~~~------l~~vl~ 406 (1610)
+|.+..|+..||++||.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..+... |.. ++.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 99999999999999999999999999977666666 555555444 457888899999988876 422 445555
Q ss_pred -HHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCC----hHHHHHHHHHHHHHHHHhCChhH
Q 000369 407 -DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 407 -~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~----~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
.+...+++.++.+|..++..++.+..... ..+.+|.+.++|.+.++|...+ .++|-...+|++.++..+|.+.|
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 23334568889999999999998776544 3477899999999999985444 68888889999999999998877
Q ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhcccc--CCCCCCCC----CCCCC
Q 000369 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASML--SGKRPVSA----APASK 555 (1610)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~--~~~~P~~~----~~~~~ 555 (1610)
.++...|=... ++.-++......|.. +..-..-+.+. -|..-.+- -|+--
T Consensus 557 ~~~a~eliqll-------~~~~~~~~~~dd~~~-----------------sy~~~~warmc~ilg~~F~p~L~~Vmppl~ 612 (1075)
T KOG2171|consen 557 LPLAEELIQLL-------LELQGSDQDDDDPLR-----------------SYMIAFWARMCRILGDDFAPFLPVVMPPLL 612 (1075)
T ss_pred hHhHHHHHHHH-------HhhcccchhhccccH-----------------HHHHHHHHHHHHHhchhhHhHHHHHhHHHH
Confidence 77765443211 111111111111100 00000000000 00000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcC-ChHHHHHHHHHHHHHHHhccc
Q 000369 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA-VWKERLEAISSLRQQVEAVQN 634 (1610)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~-~Wk~Rl~a~~~L~~~~~~~~~ 634 (1610)
++...++ ...++.++.++...+.-+-+. ..+.++ +...|-.++++-.
T Consensus 613 ~ta~~~p-----------------------~~~~~d~~d~e~~~~~~~~e~-~~~~~~e~~~I~Tsvl~eK~-------- 660 (1075)
T KOG2171|consen 613 KTARLDP-----------------------DVALSDEEDEEEEQDLDGWEV-VELGDKENIGIRTSVLDEKE-------- 660 (1075)
T ss_pred HhhccCC-----------------------cccCcCchhhhhccccccchh-hccCCceeeeeeehhHHHHH--------
Confidence 0000000 011112222222211111111 111111 2222222222211
Q ss_pred cchhHHHHHHHhhc-CCCCCccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q 000369 635 LDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (1610)
Q Consensus 635 ~~~~~~~lv~~l~~-~p~~~DsN~~V~~~~l~~l~~l~~~~-~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~ 712 (1610)
..++.|+.+=.. +-+|-.=--+|....+ . ....+ ..-.+.+...++|.++...--.-.+..+ -+..+.
T Consensus 661 --~A~~~Lv~~a~~lk~~F~pYve~v~~l~v--~--~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~--~l~~l~-- 730 (1075)
T KOG2171|consen 661 --TACEALGEYAKELKEAFAPYVEQVVELMV--P--LLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE--YLKQLW-- 730 (1075)
T ss_pred --HHHHHHHHHHHhhhhhhhhHHHHHHHHHH--H--HHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH--HHHHHH--
Confidence 112222222100 0011110001111000 0 00000 0001223334444444221100000000 111111
Q ss_pred hChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHH---HHhcCCCCCcHHHHHHHHHHHHHHHhh
Q 000369 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF---CKDTGLQSSAAATRNATIKLLGALHKF 789 (1610)
Q Consensus 713 ~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~---l~~~gl~~~n~~VR~aA~~ll~~Ly~~ 789 (1610)
.+++..++..+..-..+-+..+.++.+.+.++.+|..+++...+-.. +...-+++. .|. ...
T Consensus 731 ---~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~---~~~---------~~r 795 (1075)
T KOG2171|consen 731 ---EAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHF---KRM---------QDR 795 (1075)
T ss_pred ---HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHH---HHH---------Hhh
Confidence 12344445554445677788999999999999999766653332222 211101100 000 000
Q ss_pred hChhHH-HhhhcccHHH---HHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCC
Q 000369 790 VGPDIK-GFLADVKPAL---LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1610)
Q Consensus 790 ~G~~l~-~~l~~lkp~l---l~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~ 865 (1610)
-+.+.. ++-.+....+ =..|.+.+.++... -++. .++ +..|- ...+-|.+...+.++
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~-------l~k~-------~k~--~f~p~---f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAA-------LAKA-------LKG--SFLPF---FENFLPLIVKLLKSK 856 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH-------HHHH-------ccc--cccHH---HHHHHHHHHHHHhcC
Confidence 000000 0000000000 11122222222100 0000 000 01111 112334455555555
Q ss_pred -ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 866 -DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 866 -~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
-|. |.=|+-.+.+++....+...+. +..++..+...+.|+...|++.|.--+|.+|.--|..+.+.+...+|.+...
T Consensus 857 ~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 KTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred CcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 577 9999999999998654444443 4678888889999999999999999999999999999999999999999888
Q ss_pred hCCCc---HHHHHHHHHHHHHH---HHhc----CchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC---C--Cc
Q 000369 945 LGDNK---KHMRECTLTVLDAW---LAAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F--PD 1009 (1610)
Q Consensus 945 l~D~k---~~Vr~aa~~aL~~~---~~~~----~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~--~~ 1009 (1610)
+.... ..-+.+..+++.++ +.+. .+++++|.+...|-... +-+.-..+..+|..++++... . ..
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~ 1013 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQ 1013 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcc
Confidence 76433 23344444444444 4443 36778887777764211 223446678888888877644 1 12
Q ss_pred hhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHh-ChHHHHHHhhcCChhHHHHHHHHH
Q 000369 1010 AAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (1610)
Q Consensus 1010 ~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (1610)
..+.+.. +...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1014 ~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1014 NIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred cchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3333333 444555554444444433333222222 446677788999999998888765
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.87 E-value=1.4e-21 Score=222.56 Aligned_cols=211 Identities=27% Similarity=0.399 Sum_probs=148.6
Q ss_pred cCccchhhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHccCcCHHHHHHHHHHHHHHHHHhh
Q 000369 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (1610)
Q Consensus 284 kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~--ki~~~~~~~l~----~~L~~~l~D~n~~v~~~A~~~i~~La~~L~ 357 (1610)
.+. +.|+++..+.+|++|.+||+.|+.++.+. .....+|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46778788999999999999999988543 11222232222 356677889999999999999999999999
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhh-HHHHHHHhhcCChHHHHHHHHHHHHHHHhCC-
Q 000369 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (1610)
Q Consensus 358 ~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~v-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (1610)
..|++|+..++|.|+++++++|+.|++++..|+.+++.+ +.....+ ++.+..+++||||++|.+++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 3314566 7888889999999999999999999999998
Q ss_pred -hhHHH--HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHH
Q 000369 436 -KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1610)
Q Consensus 436 -~~~l~--~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~ 497 (1610)
...+. ..++.+++.+.++++|++++||++|+++|+.+++++|+++ ..++..||+..||.++
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYLE 228 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccCC
Confidence 33333 2358899999999999999999999999999999999986 7888999998887653
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.5e-15 Score=190.34 Aligned_cols=839 Identities=17% Similarity=0.182 Sum_probs=505.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFL 367 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~l 367 (1610)
+...+-+.+=..|++|-+.+..+...++ +...|...+. -.|..++..|+-.+-.+..+.-+....- -..+
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4445667777789999999988764432 5667777777 7788889999888888877755555433 3456
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh
Q 000369 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1610)
Q Consensus 368 lp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~-~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (1610)
...||..+ +|..+.||.+....+..++++. ...-.++++-+.++.++.|++.|+.++..|..+....+. .+..+++.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~ 159 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLDD 159 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH
Confidence 66677766 8999999999999999999871 113467888889999999999999999999887766543 35568899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC-ChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCC
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVP 524 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g-~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~ 524 (1610)
+.+.+.+|+.|+...||-+|..+++++..... +....+.+..+-|.-..-+.+.+...
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~--------------------- 218 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG--------------------- 218 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---------------------
Confidence 99999999999999999999999999998885 33322333332222222222111000
Q ss_pred CCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcH
Q 000369 525 SVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPA 604 (1610)
Q Consensus 525 ~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~ 604 (1610)
.++
T Consensus 219 ------------------------------------------------------------------d~~----------- 221 (1075)
T KOG2171|consen 219 ------------------------------------------------------------------DDD----------- 221 (1075)
T ss_pred ------------------------------------------------------------------chH-----------
Confidence 000
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcccc-chhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC-------
Q 000369 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK------- 676 (1610)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~-~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~------- 676 (1610)
.=..+++.|.+++...... .+..+.++.+....-+=++-+-.+.+.+|+++..+++..+.
T Consensus 222 ------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 222 ------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred ------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 0001122222222221111 01112222221111112444556888999999988876432
Q ss_pred CchhhHHHHHHHHHhhhccc--------------hhhHHHHHHHHHHHhhhChhhHHHHHHhhh---hcCCCHhHHHHHH
Q 000369 677 FPKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGI 739 (1610)
Q Consensus 677 ~~~~~~~~il~~LveKlgd~--------------K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l---~~~knpKv~~~~l 739 (1610)
+..+.+..++-.+.+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+|+-|.++|
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23333333333333333331 134578889999999999999988887764 5789999999999
Q ss_pred HHHHHHHHHhCCCC-CChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhh-hcccHHHHHHHHHHHhcCC
Q 000369 740 LWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNP 817 (1610)
Q Consensus 740 ~~l~~~i~~fg~~~-l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l-~~lkp~ll~~L~~ef~k~~ 817 (1610)
..|+.+.+..+-.- =++..+++.+... |.|++|.||.+|.+++|.|-..+++.+..+. +-++|++...+++.
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~----- 443 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST----- 443 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc-----
Confidence 99999987443210 1456788888885 9999999999999999999988888876554 44455544444331
Q ss_pred CCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHcc-ccCCCCChhhH
Q 000369 818 FEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGEL 896 (1610)
Q Consensus 818 ~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~-~~i~~~~~~eL 896 (1610)
.+-++-.-|.-.+-...+++. ..|.|. +..|
T Consensus 444 -----------------------------------------------~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~l 475 (1075)
T KOG2171|consen 444 -----------------------------------------------QNVRVQAHAAAALVNFSEECDKSILEPY-LDGL 475 (1075)
T ss_pred -----------------------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHH
Confidence 122333334444444444432 234444 3667
Q ss_pred HH-HHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHhcCchh
Q 000369 897 FG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN----KKHMRECTLTVLDAWLAAVHLDK 971 (1610)
Q Consensus 897 ~~-~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~----k~~Vr~aa~~aL~~~~~~~~l~~ 971 (1610)
+. .|.-.+....+.|+.+++.+|+.+|.+.+..|.+|...++|.+.+.+... ...+|.-..+|+..+...+|=++
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 77 34344456678888999999999999999999999999999998887643 35688888888888888888777
Q ss_pred hHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Q 000369 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1610)
+.|.-.+.++ .+... . . ...|.+...|.........++++.|++ |.++
T Consensus 556 F~~~a~eliq--------------ll~~~-~--~--------------~~~~~dd~~~sy~~~~warmc~ilg~~-F~p~ 603 (1075)
T KOG2171|consen 556 FLPLAEELIQ--------------LLLEL-Q--G--------------SDQDDDDPLRSYMIAFWARMCRILGDD-FAPF 603 (1075)
T ss_pred hhHhHHHHHH--------------HHHhh-c--c--------------cchhhccccHHHHHHHHHHHHHHhchh-hHhH
Confidence 6664333332 22211 1 0 012334456788888888899999975 6777
Q ss_pred hhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1052 LKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1052 l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
++..=|.-++.... +......+ ....... ..-.+. .. ..-.+. + .
T Consensus 604 L~~Vmppl~~ta~~--~p~~~~~d-----~~d~e~~--~~~~~~--------e~--~~~~~~-------------e---~ 648 (1075)
T KOG2171|consen 604 LPVVMPPLLKTARL--DPDVALSD-----EEDEEEE--QDLDGW--------EV--VELGDK-------------E---N 648 (1075)
T ss_pred HHHHhHHHHHhhcc--CCcccCcC-----chhhhhc--cccccc--------hh--hccCCc-------------e---e
Confidence 75443332221100 00000000 0000000 000000 00 000000 0 0
Q ss_pred cccCCCChHHHh----h----hhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcC----
Q 000369 1132 LNVKDSNKEDRE----R----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALP---- 1199 (1610)
Q Consensus 1132 ~~~~~~~k~~R~----~----~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~---- 1199 (1610)
+-+.++.-++.. . -...|-.|. |.-|++ ... .+-...|.-.-..|.+|++.|-..+.
T Consensus 649 ~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~-pYve~v---~~l-------~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 649 IGIRTSVLDEKETACEALGEYAKELKEAFA-PYVEQV---VEL-------MVPLLKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHhhhhhhh-hHHHHH---HHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 001111111000 0 011222233 222221 111 12233333333456677666655433
Q ss_pred ---CChhHHHHHHHHHHHHHHHhc-cCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhC-------C-
Q 000369 1200 ---SIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSG-------H- 1267 (1610)
Q Consensus 1200 ---~~~~~~~~~lDlllk~~~~r~-~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~G-------d- 1267 (1610)
..+..+.+-.+-+++-+..-+ .+.-+.|+..+|+.+...+..+.... |.+.+...++-.+..++- |
T Consensus 718 A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~~r 795 (1075)
T KOG2171|consen 718 ACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQDR 795 (1075)
T ss_pred HhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333433343334444444433 45789999999999999888887654 777777766666554431 1
Q ss_pred --------ChHHHHH-----------HHHHHHHHHHhcCCc------cccHHHHHhcccCCchhhHHHHHHHHHHHHHhh
Q 000369 1268 --------NIEKVRE-----------KMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH 1322 (1610)
Q Consensus 1268 --------~k~~vr~-----------~v~~il~~~~~~~~~------~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~ 1322 (1610)
--+..++ .+.+++-.+.+.+-. ..++|++..-+.++++=-|+=.+.-++.+|+..
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~ 875 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGC 875 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 1111122 222222222222222 247888887776666555888888899999998
Q ss_pred CCCcccc-cchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHHHHhhcCCHHHHHHH
Q 000369 1323 GAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1381 (1610)
Q Consensus 1323 G~~~~~~-~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~~g~l~~~~~~~l 1381 (1610)
|-..... ..-++.+..++.|.++.||.+|--.++.+-.+.|+.--..+..+.+..-.++
T Consensus 876 ~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~i 935 (1075)
T KOG2171|consen 876 GEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVL 935 (1075)
T ss_pred ccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 8765322 2346999999999999999999999999999999873333333344443333
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.76 E-value=8.7e-18 Score=191.48 Aligned_cols=207 Identities=21% Similarity=0.326 Sum_probs=141.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCC----hhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChh
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~----~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~ 929 (1610)
+...|.+...+.+|+.|.+|++.|+.++.+..+.-.+.. +.++...+...+.|.|..|+..||.+++.++..+|..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 455566666889999999999999999986311111111 2233346667889999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-
Q 000369 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1610)
Q Consensus 930 ~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-l~~l-l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~- 1006 (1610)
|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+..++.++ ||.+|.+++.|+...+..++.
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccch
Confidence 999999999999999999999999999999999999999 5666 67777777776 899999999999999999982
Q ss_pred CCc------hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHH
Q 000369 1007 FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1610)
Q Consensus 1007 ~~~------~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (1610)
... +..++..+..+++|++++||++|+.++..+++++|+.+ ...+..|+|..++.+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 23455558899999999999999999999999999986 557799999888765
No 8
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.2e-14 Score=174.86 Aligned_cols=516 Identities=17% Similarity=0.178 Sum_probs=338.9
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhhCC-CCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHH
Q 000369 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1610)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q 216 (1610)
.+..+.+....+.+...++.++|-+.+ ..+++..-..++| .+.++|+....+...+.+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 667778888888888899999998643 2333333333332 27889999888888887777431 22222
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhcc
Q 000369 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1610)
Q Consensus 217 ~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s 296 (1610)
.-++..|+... +|+...+..- +..-..-. .. . +..+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~~---tps~~~q~~~---------~~~l~~~~----~~-----~---~~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEELD---TPSKSVQRAV---------STCLPPLV----VL-----S---KGLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhcC---CCcHHHHHHH---------HHHhhhHH----HH-----h---hccCHHHHH-----HHHHHHhcc
Confidence 23334444332 3432221100 00000000 00 0 000111111 345566788
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHH-HHHHHHHHHHHhhhcchhhhhhHHHHHHHHh
Q 000369 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1610)
Q Consensus 297 ~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~-A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl 375 (1610)
.+..+|+.+...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999987766665444578899999999998888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~~~-~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
+|+-+.||+++..|.++++.. +..++..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999986 33567889999999998889999999999998 6777777788899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhh
Q 000369 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1610)
Q Consensus 455 ~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~ 534 (1610)
+|++++||++|.+|+-.++.++.+..+.++++.|- +++.. |+..+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~------------------ 349 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT------------------ 349 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch------------------
Confidence 99999999999999999999999988888876543 23211 11000
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCC
Q 000369 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1610)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~ 614 (1610)
++.--+. +. +.-...+ ++-..+++-|-+.++|....
T Consensus 350 ~e~~~~L-~~---------------------------------ttFV~~V----------~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 350 PECLDSL-GA---------------------------------TTFVAEV----------DAPSLALMVPILKRGLAERS 385 (569)
T ss_pred HHHHHhh-cc---------------------------------eeeeeee----------cchhHHHHHHHHHHHHhhcc
Confidence 0000000 00 0000011 11112234455555555544
Q ss_pred hHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000369 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1610)
Q Consensus 615 Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (1610)
...+..++..+. .+..+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~Iid---------------------------------------Nm~~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIID---------------------------------------NMCKLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHH---------------------------------------HHHHhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 443333222222 12222211 11112344555666555554
Q ss_pred cc--hhhHHHHHHHHHHHhhhCh---hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH-HHHHhcCC
Q 000369 695 DI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI-DFCKDTGL 768 (1610)
Q Consensus 695 d~--K~r~~a~~~L~~l~e~~~~---~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li-~~l~~~gl 768 (1610)
|+ -+|..+..+|..+.|..+. ..+...+...+..+|.-+-+.++++.+.+++...|...+ ..++ +.+.....
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 43 4677777777666665443 445666777766788888899999999999988887532 1222 22222223
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcC
Q 000369 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1610)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~ 816 (1610)
....+.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+..
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 445667999999999888888888999999888888888887654443
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.66 E-value=4.4e-09 Score=130.02 Aligned_cols=517 Identities=15% Similarity=0.187 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhhHHHHHHHhhcC--Ch
Q 000369 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK--VP 417 (1610)
Q Consensus 341 v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-~~~~l~~vl~~l~~~l~~K--np 417 (1610)
+..++|..++.+-..+|.-.-++...++..++-.+.-....||.-+..|+..+..+ +..-+..+++++..+|.+. +.
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 56677777777777778777778888888888889999999999999999988876 1123567788888888643 34
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh---cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHH
Q 000369 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494 (1610)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l---~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~k 494 (1610)
.+|.. ...|..+....+ ..+..+++.++|.+.+.+ +..+.+.|+...++++.|....+.+ +.|+.+.+-..-.+
T Consensus 229 ~~rt~-Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 229 ATRTY-IQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHVPEIINLCLS 305 (1233)
T ss_pred HHHHH-HHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccchHHHHHHHH
Confidence 44432 233333333222 235567789999999998 8899999999999999999888754 57777766543333
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000369 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 574 (1610)
Q Consensus 495 ki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1610)
+|. - . |.-. ...+ + . ..+
T Consensus 306 yis----Y----D----PNy~--------yd~~--e------D-------------------------ed~--------- 323 (1233)
T KOG1824|consen 306 YIS----Y----D----PNYN--------YDTE--E------D-------------------------EDA--------- 323 (1233)
T ss_pred Hhc----c----C----CCCC--------CCCc--c------c-------------------------hhh---------
Confidence 322 1 0 1000 0000 0 0 000
Q ss_pred CcCCCCCCCCC-CCCCCHHHHH----HHH-------------------hccCcHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000369 575 SKLTEAPEDVE-PSEMSLEEIE----SRL-------------------GSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1610)
Q Consensus 575 s~~~~~~~~~~-~~~~s~ee~~----~~~-------------------~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~ 630 (1610)
...++.+|-+ ..++|+||-. .++ -.-++|.++.++.+..-..|.+.++.+...+.
T Consensus 324 -~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 324 -MFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred -hhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 0000000000 1122322100 000 00012333444333333333333333332221
Q ss_pred hcc-------------ccch---------hHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000369 631 AVQ-------------NLDQ---------SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1610)
Q Consensus 631 ~~~-------------~~~~---------~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~ 688 (1610)
.-. +.+. ..-.+++.+.+ .+++...+-.+..|..|..++...++....+...++|+
T Consensus 403 qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~--qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpg 480 (1233)
T KOG1824|consen 403 QTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK--QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPG 480 (1233)
T ss_pred cCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH--HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchh
Confidence 100 0000 00112222221 12233333445677777777776676666778889999
Q ss_pred HHhhhccch----hhHHHHHHHHHHHhhhChhhHHHHHHh-------hhhcCCCHhHHHHHHHHHHHHHHHhCC----CC
Q 000369 689 ISERVADIK----TRAHAMKCLTTFSEAVGPGFIFERLYK-------IMKDHKNPKVLSEGILWMVSAVEDFGV----SH 753 (1610)
Q Consensus 689 LveKlgd~K----~r~~a~~~L~~l~e~~~~~~v~~~l~~-------~l~~~knpKv~~~~l~~l~~~i~~fg~----~~ 753 (1610)
++-.+.|.- .+..+.-.|....-..+|+ +|....+ ......=+|+-.|+|..+.++++-.-. ..
T Consensus 481 I~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 481 IIYSLNDKSSSSNLKIDALVFLYSALISHPPE-VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhcCCccchHHHHHHHHHHHHHHHhcCChh-hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 998888842 2222322333322233332 2222222 223466789999999999998874322 12
Q ss_pred CC----hHhHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccc
Q 000369 754 LK----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1610)
Q Consensus 754 l~----~k~li~~l~~~-gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~ 828 (1610)
++ ++.++....+. --.+++.+||+.|+.|++.+-..+|+.+..++...-|.+++.+..|
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE---------------- 623 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE---------------- 623 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch----------------
Confidence 33 44555443322 1467899999999999999998888655554433333222222221
Q ss_pred cCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCC--CCChhhHHHHHHhcccc
Q 000369 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYD 906 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~--~~~~~eL~~~L~~~L~D 906 (1610)
-.|..|+..+--|... .-.|. +. ++++...|..-+.-
T Consensus 624 ---------------------------------------iTRl~AvkAlt~Ia~S-~l~i~l~~~-l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 624 ---------------------------------------ITRLTAVKALTLIAMS-PLDIDLSPV-LTEILPELASFLRK 662 (1233)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHhc-cceeehhhh-HHHHHHHHHHHHHH
Confidence 1344555555555432 12222 22 36666666666655
Q ss_pred ccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHH
Q 000369 907 SNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTA 979 (1610)
Q Consensus 907 sn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~ 979 (1610)
.+..++..++.++..+.+..+..+..+ +..++-.+...+.++...|.+-|..++.+++..-+ -..+++.+...
T Consensus 663 ~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~l 742 (1233)
T KOG1824|consen 663 NQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRL 742 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHH
Confidence 666778888999999999998887765 45577778888899999999999999999887643 35577778888
Q ss_pred HhcC
Q 000369 980 LTDA 983 (1610)
Q Consensus 980 L~~~ 983 (1610)
++++
T Consensus 743 l~Sp 746 (1233)
T KOG1824|consen 743 LRSP 746 (1233)
T ss_pred hhCc
Confidence 8865
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.1e-12 Score=149.67 Aligned_cols=691 Identities=15% Similarity=0.174 Sum_probs=413.5
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH----hhhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~----L~~~f-~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~ 396 (1610)
++.++.+.|...+.....+....|+.++..+++. +..++ .+....++|.++.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3456666666666522223356666666555553 33333 256889999999999999999999999999987653
Q ss_pred c----CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 397 ~----~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+ ..+.+++..++..+.....|.|.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 13466777777766678899999999999998888654 346688899999999999999999977777766666
Q ss_pred HHH-hCChhHHHhhhhccHHHHHHHH-----HHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCC
Q 000369 473 AKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (1610)
Q Consensus 473 ~~~-~g~~~~~~~l~~Ld~~~~kki~-----e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (1610)
+.. +....+.||+.+|-|.....+. ..+-+. .+-+..-| .++ ...|
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~-~eeD~~vp---------------Dre------------eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN-NEEDESVP---------------DRE------------EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC-ccccccCC---------------chh------------hhcc
Confidence 643 3456678888887775443222 000000 00000000 000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCC---CCCHHHHHH----HHhccCc--------HHHHHHhh
Q 000369 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS---EMSLEEIES----RLGSLIP--------ADTVGQLK 611 (1610)
Q Consensus 547 P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~s~ee~~~----~~~~ll~--------~~l~~~L~ 611 (1610)
|-- .|+...+.+.-. ...-.+++++-... .+...-+.+ .++.+++ |-+.+.|.
T Consensus 336 PRf----------hksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRF----------HKSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chh----------hhchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 110 011111000000 00000000000111 111111222 2233444 44556888
Q ss_pred cCChHHHHHHHHHHHHHHHh-ccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHH
Q 000369 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGI 689 (1610)
Q Consensus 612 s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~-~~~~~~~~~~il~~L 689 (1610)
+.+|+.|.+|+-.|..+.++ |+-..+....++.+|. +.+.|+-+-|..-.+=+|..+..-. ..-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~--~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLL--SLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHH--HHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999887 5443334444555543 1345554444443333333332211 111335677888999
Q ss_pred Hhhhccc--hhhHHHHHHHHHHHhhhChhhH------HHHHHhhh--hcCCCHhHHHHHHHHHHHHHHHhCCCC--C--C
Q 000369 690 SERVADI--KTRAHAMKCLTTFSEAVGPGFI------FERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH--L--K 755 (1610)
Q Consensus 690 veKlgd~--K~r~~a~~~L~~l~e~~~~~~v------~~~l~~~l--~~~knpKv~~~~l~~l~~~i~~fg~~~--l--~ 755 (1610)
+.++-|. |++++|..++..+-|..+.+.| +.+++... -++||-.+.-.++..|+.-+...=.+. + -
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 5899999999998887776543 44443332 248999999888888887773211110 1 1
Q ss_pred hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHH---HHhcCCCCCC-CCCCcc-ccC
Q 000369 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA---EYEKNPFEGT-VVPKKT-VRA 830 (1610)
Q Consensus 756 ~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~---ef~k~~~~~~-~~p~r~-~r~ 830 (1610)
+.++++.-. . +.|+++++=- -.+|+..+..-+|.+|.+|-..+=..-...|++ ...++..... -.|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 123333322 4 7888877543 356677777778887776654433333333332 2223322110 011111 000
Q ss_pred ccCc-----CCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000369 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1610)
Q Consensus 831 ~~~~-----~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~ 905 (1610)
+-+. ++-++....++-+.+ |..-++.-+.|.--.+|..+.--++.+...+...+.|.. .+++..|-.-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000011122232222 334456677899999999999999999987767788874 888888887777
Q ss_pred cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000369 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (1610)
Q Consensus 906 Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k--~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~ 977 (1610)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+...-++..+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 77888999999999999999999999999999988887766433 3455555555555554443 222222222
Q ss_pred HHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHH---HHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhc
Q 000369 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK---PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1610)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~---pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1610)
..+++=+ .-+.|..++.-+...+.-.+.. +..... -.+....+...++|..-++.|..+...+|+..-..++..
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~--vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~q 870 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSG--VVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQ 870 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchh--hhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 3333211 1235777777776655444432 221111 234455677799999999999999999999999999999
Q ss_pred CChhHHHHHHHH
Q 000369 1055 IQGPALALILER 1066 (1610)
Q Consensus 1055 L~~~~~~~i~~~ 1066 (1610)
++|..+..+.+.
T Consensus 871 f~P~~~erl~a~ 882 (885)
T KOG2023|consen 871 FPPPLKERLQAF 882 (885)
T ss_pred CChhHHHHHHHH
Confidence 999887776654
No 11
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.60 E-value=1.9e-13 Score=158.05 Aligned_cols=387 Identities=16% Similarity=0.182 Sum_probs=264.7
Q ss_pred hHHHHHHHHHhhhccc---hhhHHHHHHHHHHHhhhChhhHHHHHHhhhhc---CCCHhHHHHHHHHHHHHHHHhCCC--
Q 000369 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVS-- 752 (1610)
Q Consensus 681 ~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~---~knpKv~~~~l~~l~~~i~~fg~~-- 752 (1610)
|...-+..++.|-|-. .++......+..+..++.+.+..- +++.+.+ .-.||-|...+++++...++|...
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 4444445555554432 234444556666777777766655 6665533 458899999999999999987643
Q ss_pred CCChHhHHHHHHhcCCCC----C-cHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCC-CCCCC-
Q 000369 753 HLKLKDLIDFCKDTGLQS----S-AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 825 (1610)
Q Consensus 753 ~l~~k~li~~l~~~gl~~----~-n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~-~~~p~- 825 (1610)
..+.+..-...+++ +.+ . ...+-......++.++-.+-.+|...++.+.|.......+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 23333333333332 221 1 2234455566777777677778999899999988888777666554221 11111
Q ss_pred -c--cc-cCccCc-----C--------CC---------CCC--------------CCCCCCcccc-ccccchHHHhhcCC
Q 000369 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (1610)
Q Consensus 826 -r--~~-r~~~~~-----~--------~~---------~~~--------------~~d~~pr~dI-s~~l~~~ll~~l~d 864 (1610)
+ +. +.+... + .. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222111 11233466677766
Q ss_pred C-ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHH
Q 000369 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1610)
Q Consensus 865 ~-~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll 942 (1610)
. .-..|++|+.+|..++.+....++...|++|+..+.+.|.| .+......|+++|+.|+++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 5 78899999999999998766677777799999999999999 688899999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--Cc-hhhhHHHHH
Q 000369 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PD-AAHLLKPAS 1018 (1610)
Q Consensus 943 ~~l~D~k~-~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~-~~~ll~pl~ 1018 (1610)
++-+|+.+ .+|.|+..|+..+..+.+... +..+...+.+.. ...-..+++++.++++..... .. +.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999665 566666666777777776554 344555555432 223467788999999988652 12 334444588
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCC
Q 000369 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~ 1072 (1610)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999754
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.7e-11 Score=148.03 Aligned_cols=351 Identities=18% Similarity=0.176 Sum_probs=251.2
Q ss_pred CCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHH--
Q 000369 45 PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV-- 121 (1610)
Q Consensus 45 ~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~-- 121 (1610)
..||....+...+-.-+.-.-..+|+....++..++-......+ +-+..++.++++ ++..-+..+.-.+--++
T Consensus 89 ~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g 164 (569)
T KOG1242|consen 89 IVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNG 164 (569)
T ss_pred ccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC
Confidence 34443333333334445666777888888888777655432222 223333445566 45555554444444433
Q ss_pred ---hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 122 ---ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 122 ---e~~~~~~v~~~L~~~l~~KnpKv~~-~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
+......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|+|..+.||++|...+..+.
T Consensus 165 ~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 165 LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 2234567889999999888775554 5666666666666764333 5678888889999999999999887766665
Q ss_pred HhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCC
Q 000369 197 RWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 276 (1610)
Q Consensus 197 ~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~ 276 (1610)
+.+.+-.++..+
T Consensus 245 ~~~~~~aVK~ll-------------------------------------------------------------------- 256 (569)
T KOG1242|consen 245 RCLSAYAVKLLL-------------------------------------------------------------------- 256 (569)
T ss_pred HhcCcchhhHhh--------------------------------------------------------------------
Confidence 555432221111
Q ss_pred CcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH
Q 000369 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 355 (1610)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~ 355 (1610)
| .....+.+.+|+++..+++-+..+. ..|+..+....++++.|.+++.|+.+.|+..+..|+..+...
T Consensus 257 ---------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 257 ---------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred ---------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 0 1111222338999999999999877 455555555789999999999999999999999999999988
Q ss_pred hhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000369 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1610)
Q Consensus 356 L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (1610)
... +-+..++|.|++.+.|.+..+.++...-..+=|-+ ...+++-++|.+..++...+..+|..++..+.....-
T Consensus 326 idN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 326 IDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred hcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 875 45888999999999999977765554444332222 2356778899999999999999999999998888777
Q ss_pred C-ChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000369 434 S-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 434 ~-~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
+ .+..+.++++.++|.+.+.+.|+.|+||..+.++|+.+.+..|+..+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 7 56778899999999999999999999999999999999999998764
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.47 E-value=3e-10 Score=136.25 Aligned_cols=569 Identities=18% Similarity=0.194 Sum_probs=334.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K 415 (1610)
|.....+.+.-..|..|++..|=. ..+..+=--+..+...||+-...|...++.+ .+++.+++.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444455666666777666643311 1122222223455667888777888888876 78899999998888876
Q ss_pred -ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC---hhHHHhhhhccHH
Q 000369 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1610)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~---~~~~~~l~~Ld~~ 491 (1610)
+|+-|.........+..-.+-+ ...+++.++.++-++|.|....||--+.-++.++.+..+- +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776555444444 3467899999999999999999999999999999988663 3343333322111
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcch-hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 492 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKK 566 (1610)
Q Consensus 492 ~~----kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~ 566 (1610)
.+ +-+..+++..|---|-.. ++ ..+ .++. .+....+
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~e--ya~yyTre---vmlil~r-------------------- 643 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AE--YASYYTRE---VMLILIR-------------------- 643 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HH--HHHHhHHH---HHHHHHH--------------------
Confidence 00 001111111000000000 00 000 0000 0000000
Q ss_pred CCCCCCcCCcCCCCCCCCCCCCCCHHHHH-------HHH-------hccCcHHHHHHhhcCChHHHHHH----HHHHHHH
Q 000369 567 DGSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQ 628 (1610)
Q Consensus 567 ~~~~~~~~s~~~~~~~~~~~~~~s~ee~~-------~~~-------~~ll~~~l~~~L~s~~Wk~Rl~a----~~~L~~~ 628 (1610)
++...+||.. .+. ..++..+++..++.+=|..|.++ +.+|...
T Consensus 644 -------------------Ef~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~t 704 (1172)
T KOG0213|consen 644 -------------------EFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDT 704 (1172)
T ss_pred -------------------hhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHH
Confidence 0000011111 111 12344677788888889988887 3333222
Q ss_pred HHhc-cccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhccchhhHH-HHH
Q 000369 629 VEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMK 704 (1610)
Q Consensus 629 ~~~~-~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~r~~-a~~ 704 (1610)
.-.. ... .+.+.+-+.+. .++|-+.|-.....+++..++.+.+ ++..+....++.+++-.+...-+-+. ...
T Consensus 705 tv~ia~Kv-G~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~ 780 (1172)
T KOG0213|consen 705 TVEIAAKV-GSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLL 780 (1172)
T ss_pred HHHHHHHh-CchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhh
Confidence 1111 111 12234444443 4788888888888888888888765 35566666677777666554322222 223
Q ss_pred HHHHHHhhhCh------hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHH----HHhcCCCCCcHH
Q 000369 705 CLTTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF----CKDTGLQSSAAA 774 (1610)
Q Consensus 705 ~L~~l~e~~~~------~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~----l~~~gl~~~n~~ 774 (1610)
.+-.++..++. ..++..++..+ ++|+|+||+.++..++.+..-.... .-..++.. +-.. ++...|+
T Consensus 781 gfg~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~lGvvLyEy-lgeeypE 856 (1172)
T KOG0213|consen 781 GFGTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHLGVVLYEY-LGEEYPE 856 (1172)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHhhHHHHHh-cCcccHH
Confidence 33444444332 23445555554 8999999999998887765321110 00011111 1111 2333333
Q ss_pred HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccccccc
Q 000369 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854 (1610)
Q Consensus 775 VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l 854 (1610)
|--.-+..+..+|..+|-. |. .|| -.||...|
T Consensus 857 vLgsILgAikaI~nvigm~---------------------km---~pP------------------------i~dllPrl 888 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMT---------------------KM---TPP------------------------IKDLLPRL 888 (1172)
T ss_pred HHHHHHHHHHHHHHhcccc---------------------cc---CCC------------------------hhhhcccc
Confidence 3333333333333322211 00 111 01232223
Q ss_pred chHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+| .|.++.-|+-...++-++.|+..+..++....+--++--|...|+-.|+.++..|.+++|.|+++.|+.
T Consensus 889 tP----ILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 889 TP----ILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred hH----hhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 43 455666777788888898888754343433223335556667778889999999999999999999975
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-CCchhhh
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHL 1013 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~~~~~~l 1013 (1610)
.++-.+++.|+-+.-.-|....-++..+++.|++=.++|.|..-...+ +..+..++|.-|.-.|+..+. +.+..-.
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence 788899999998888888888889999999999988999888777766 345678888888777776654 3455666
Q ss_pred HHH-HHHhcCCCCHHHHHHHHHHHHHH
Q 000369 1014 LKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1014 l~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
+.| +-.+|.|++.--|..|..++.-+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 677 45699999999999887765433
No 14
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=9e-11 Score=151.19 Aligned_cols=574 Identities=18% Similarity=0.195 Sum_probs=349.8
Q ss_pred HhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh-hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 402 ~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
.-+.+.+...+.+.||..|++.+-||-.+++++++ ....-.+++|..++...|.|.|.=+.+.|.+.|+.++..-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34455566778899999999999999999998762 23344568899999999999999999999999998887644322
Q ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000369 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1610)
Q Consensus 481 ~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~ 560 (1610)
-..+.+.| .+ ...+|. + .+..+ ... ..-.+.++. |+.|
T Consensus 897 k~~LV~sL----~~---tl~~Gk---r----~~~~v------------s~e--TelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL----VN---TLTGGK---R----KAIKV------------SEE--TELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH----HH---HHhccc---c----cccee------------ccc--hhcccCCcC-CCCC-------------
Confidence 11122111 11 111110 0 00000 000 000000000 1111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCC-CHHHHHHHHhccCcHHHHHHhh-----cCChHHHHHHHHHHHHHHHhc-c
Q 000369 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEM-SLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-Q 633 (1610)
Q Consensus 561 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-s~ee~~~~~~~ll~~~l~~~L~-----s~~Wk~Rl~a~~~L~~~~~~~-~ 633 (1610)
+ .+.+ |.-|+.+.++++-.|+++.++- +..|.-|+-|.-.+..+.+.. .
T Consensus 935 ------~------------------Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~ 990 (1702)
T KOG0915|consen 935 ------D------------------GGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE 990 (1702)
T ss_pred ------C------------------CCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence 1 1122 5699999999999999987653 367999999999999887663 2
Q ss_pred ccchhH-HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccc--hhhHHHHHHHHHHH
Q 000369 634 NLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFS 710 (1610)
Q Consensus 634 ~~~~~~-~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~ 710 (1610)
...++. +.+-|..+. --|++..|++.+-++|..++.......+.++..++..|+..|++. ++|+++.-+|..+.
T Consensus 991 kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred hhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 332332 233333321 269999999999999999998655677789999999999999996 78999988888777
Q ss_pred hhhChhhH-------HHHHHhhhhcCCCHhHH---HHHHHHHHHHHHHhCCC--CCC----hHhHHHHHHhcCCCCCcHH
Q 000369 711 EAVGPGFI-------FERLYKIMKDHKNPKVL---SEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAA 774 (1610)
Q Consensus 711 e~~~~~~v-------~~~l~~~l~~~knpKv~---~~~l~~l~~~i~~fg~~--~l~----~k~li~~l~~~gl~~~n~~ 774 (1610)
.--+.+.+ +..+++.+ ++-.--|| ..++..+++++-..+.. +.. +..+++++..-|.-++-++
T Consensus 1068 ~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1068 QGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred cCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 65444443 44444443 22222233 34566666666544431 112 2346677654456688999
Q ss_pred HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHH-HhcCCCCCC------CCCCccccCccCcCCC-CCCCCCCCC
Q 000369 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE-YEKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLP 846 (1610)
Q Consensus 775 VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~e-f~k~~~~~~------~~p~r~~r~~~~~~~~-~~~~~d~~p 846 (1610)
||..++.++..|-++.|..+++|+.+|.|.++..+..- -....+-.. ....-..|.+.+..+. -...++.++
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999887665431 000000000 0000011111111000 001123344
Q ss_pred ccccc--cccchHHHhhcCCC-ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHH
Q 000369 847 REDIS--GKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 923 (1610)
Q Consensus 847 r~dIs--~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la 923 (1610)
-.|++ .+++|.+.+.+... .--.|.....-+-.+.......++|.- |.++.++...+.|-|..++..-...++.++
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 44443 45666666655333 455566655555555555556778864 999999999999999999999999999999
Q ss_pred HHhCh-hHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 924 SAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 924 ~~lg~-~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~--~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
..-.+ .+.++.+.++..++....+.++........-.+...+.. ....++|.++=..... ....+++++-+ +
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dv--W 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDV--W 1380 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHH--H
Confidence 98777 478888888888887776655332222222111111111 1466888666554321 01123333222 1
Q ss_pred hccCCCCCc-----hhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHH----HhChHHHHHH
Q 000369 1001 LTGLSGFPD-----AAHLLKPAS-IAMTDKSSDVRKAAEACIVEILR----AGGQETIEKN 1051 (1610)
Q Consensus 1001 l~~~~~~~~-----~~~ll~pl~-~~L~D~~~dVR~aA~~~l~~l~~----~~G~~~~~~~ 1051 (1610)
.+-.+.+.. ...++.+++ ..+++....+|+.+..++..+.. .++++.+.+.
T Consensus 1381 ~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl 1441 (1702)
T KOG0915|consen 1381 AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKL 1441 (1702)
T ss_pred HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHH
Confidence 112222221 233444544 35688889999999888876653 3454444433
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.41 E-value=3.8e-08 Score=135.64 Aligned_cols=772 Identities=14% Similarity=0.131 Sum_probs=448.5
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhh---HHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhhh
Q 000369 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV 126 (1610)
Q Consensus 52 ~~~~~~~k~v~D-sN~~~q~~~leal~~~v~~~~~~~~~~~---~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~~ 126 (1610)
....++.+.-.. ++...++.++..|..|.+...++ .+.. .+.+|.||.= |. +.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~l-L~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSL-LRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 344566666544 47899999999999998876442 2222 3467777765 54 6788888888777777654321
Q ss_pred ------hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhhHHHhhhhhhCCCC---HHHHHHHHHHH
Q 000369 127 ------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLT 192 (1610)
Q Consensus 127 ------~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~f-----G~~~~~~k~il~~l~~ll~~~d---~~VR~~a~~l~ 192 (1610)
...+..|...+++-++..+..|..+|..+.... +.+++--.-.+|.|..++.+.+ +.|++.+...+
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 244556666677778888888888887765421 1111112335667777777653 23333332222
Q ss_pred HHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCC
Q 000369 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDE 272 (1610)
Q Consensus 193 ~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~ 272 (1610)
..|..+-+. ....+. +. + .+
T Consensus 172 ~nLs~~~en--~~~~II------------------------------------------ea---G-----------aV-- 191 (2102)
T PLN03200 172 RNLCGSTDG--FWSATL------------------------------------------EA---G-----------GV-- 191 (2102)
T ss_pred HHHhcCccc--hHHHHH------------------------------------------Hc---C-----------CH--
Confidence 222211110 000000 00 0 00
Q ss_pred ccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCC--CChHHHHHHHHHHcc-CcCHHHHHHHHHH
Q 000369 273 YELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1610)
Q Consensus 273 ~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~--~~~~~l~~~L~~~l~-D~n~~v~~~A~~~ 348 (1610)
+.+.+.+.+.+=..+.+|...|..++ +.+.... -+ ...++.|.+++. +.+..+...|+-+
T Consensus 192 ---------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~A 255 (2102)
T PLN03200 192 ---------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGA 255 (2102)
T ss_pred ---------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHH
Confidence 12344455555556666766665554 2221100 01 123566777776 5677899999999
Q ss_pred HHHHHHHhhhcchhh--hhhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC-C
Q 000369 349 IGNLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-V 416 (1610)
Q Consensus 349 i~~La~~L~~~f~~~--~~~llp~Ll~klkd---------kk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K-n 416 (1610)
+..|+.+- .++..+ -...+|.|++.+.. .+...++.+.-||..++.. ...+++.+...+.+. .
T Consensus 256 L~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 256 LEALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRS 330 (2102)
T ss_pred HHHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccch
Confidence 99999751 222222 12457777777753 3345678888888887653 355777776666542 3
Q ss_pred hHHHHHHHHHHHHHHHhCChh-HHHHhh--hhHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHhCChhHHHhhhhccHHH
Q 000369 417 PLVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~~~l~D~~~~V-R~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~ 492 (1610)
..+-..++..+..++...... .....+ ..+++.|.+++.+.++.+ .+.+.++|. ..+|+..+...+..-|.
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da-- 405 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA-- 405 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--
Confidence 444445555665554433211 111111 246789999999888774 767776664 34565444334432221
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 572 (1610)
Q Consensus 493 ~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1610)
.+-+...+...+ ..++.......
T Consensus 406 ik~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------ 428 (2102)
T PLN03200 406 KKVLVGLITMAT---------------------------ADVQEELIRAL------------------------------ 428 (2102)
T ss_pred hhhhhhhhccCC---------------------------HHHHHHHHHHH------------------------------
Confidence 111111111000 00000000000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhcccc------chhHHHHHHHh
Q 000369 573 ETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLV 646 (1610)
Q Consensus 573 ~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~------~~~~~~lv~~l 646 (1610)
+...+ -+.+........-.-+.++..|.+.+-..|..|+..+..+..+.++. ......|+++|
T Consensus 429 --~~L~~---------~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL 497 (2102)
T PLN03200 429 --SSLCC---------GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL 497 (2102)
T ss_pred --HHHhC---------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 00000 01122222222223477889999999999999998888776432211 01234556665
Q ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--cchhhHHHHHHHHHHHhhhChhhHHHHH
Q 000369 647 CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERL 722 (1610)
Q Consensus 647 ~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~v~~~l 722 (1610)
. ..+..++..+.-++..+... ..-.+..+ ..++|.|++-+. +.+.+..|..+|..+......+ ++..+
T Consensus 498 ~------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~L 569 (2102)
T PLN03200 498 E------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQL 569 (2102)
T ss_pred c------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHH
Confidence 3 34567888888787766642 11112233 236777777654 4578888888999887654443 45666
Q ss_pred HhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHh
Q 000369 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1610)
Q Consensus 723 ~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-----~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1610)
+.- +.+.+++++..++..+..++..-... +.....-++.+..+ +.+.++.+++.|..++..++....+
T Consensus 570 v~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d----- 642 (2102)
T PLN03200 570 TAL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD----- 642 (2102)
T ss_pred HHH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH-----
Confidence 654 57889999999999887776521111 00011356777778 8999999999999988888742211
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHH
Q 000369 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1610)
Q Consensus 798 l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1610)
+.+.+-. ....+-++..+.+.+-+.|+++...|
T Consensus 643 -------~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL 675 (2102)
T PLN03200 643 -------LCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARAL 675 (2102)
T ss_pred -------HHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHH
Confidence 1100000 00112366777888888999999999
Q ss_pred HHHHHHccccCCCC-ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHH
Q 000369 878 NKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956 (1610)
Q Consensus 878 ~~ll~~a~~~i~~~-~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa 956 (1610)
..+..+.+..-... .-...++.|.+.|++.+..++..|+.++..++..-...-+-.....+++++..+.+....+|+.|
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~A 755 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNA 755 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Confidence 98885321100000 01346788999999999999999999999998753222111224668999999999999999999
Q ss_pred HHHHHHHHHhcCchhhH----------HHHHHHHhcCcC-Chhh--HHHHHHHHHHHhccCCC-CC------chhhhHHH
Q 000369 957 LTVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKP 1016 (1610)
Q Consensus 957 ~~aL~~~~~~~~l~~ll----------~~l~~~L~~~~~-~~~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~p 1016 (1610)
..+|..+..+.+.+.++ ..+...|+..+. +... =.+++.+|++.=..... .+ +...-+.|
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~ 835 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEP 835 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHH
Confidence 99999999888766633 345566763321 1111 23445555542111111 11 23355778
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
++.||.+.+++|-..|.+.|..+++
T Consensus 836 l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 836 LVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.1e-08 Score=122.62 Aligned_cols=675 Identities=16% Similarity=0.171 Sum_probs=385.6
Q ss_pred CCcH-HHHHHHHHHHHHHHHHhchhh----h-hhhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhh------hhhH
Q 000369 63 DSNA-PVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA------VDVF 129 (1610)
Q Consensus 63 DsN~-~~q~~~leal~~~v~~~~~~~----~-~~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~------~~~v 129 (1610)
|++. ..+|.|+.||....+-+..-+ . +...-++|..++= +. ..|++|..|+.|+-.|+-+.. .+..
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f-~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~F 216 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQF-FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKF 216 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHH-HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHH
Confidence 4444 778888888887766543311 1 2233445554442 22 589999999999998874421 2344
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHh-hCCchhhHH
Q 000369 130 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTI 207 (1610)
Q Consensus 130 ~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~~~~~ 207 (1610)
++.|..--+.-+|.|+...+..+.-++.-.--+.+| +..++.++...-+|.|.+|-=||..+...+... +-++.+.++
T Consensus 217 le~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 217 LEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 444444446788999988888888777644445554 678999999999999999999998886665522 122234455
Q ss_pred HhhhChHHHHHHH-----HHH-HHhcC-CCCCC-------cccchhhhhHhhhhhccccCCCCCCCCCCCCCCC-CCCCC
Q 000369 208 LFEKMRDTMKKEL-----EVE-LVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVP-PEIDE 272 (1610)
Q Consensus 208 l~~~lk~~q~kel-----e~~-f~~~~-~~~~p-------~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~id~ 272 (1610)
| ++|-|+.+.-. +-. .++.. ....| +|+-++.+. ..+.+.+++++.+++ .|.|.
T Consensus 297 l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~----------~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 297 L-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH----------GNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred H-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc----------cCccccccccccccccccccc
Confidence 4 56666654321 111 11111 11122 244433221 011111111111100 01111
Q ss_pred ---ccC----CCcccc---------cCcCccchhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHcc
Q 000369 273 ---YEL----VDPVDI---------LTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (1610)
Q Consensus 273 ---~d~----~~~vdI---------l~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~-~~ki~~~~~~~l~~~L~~~l~ 335 (1610)
|.+ +-..|| +..+- +-+.+.+.+..|+.|..++-.|.+|+. .-+-....+++|+.-|..++.
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~-PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILL-PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHH-HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 100 111222 22211 234456788999999999999999983 222233457899999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hhHHHHHH
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKT 410 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~-f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~----~vl~~l~~ 410 (1610)
|.-+.|+..+|=+++..++-.-.. =+.|...++..++.++-|+|+.|++||..|+.++-...+..+- .++..+.-
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999999998865433 3478999999999999999999999999999999876444443 44444433
Q ss_pred Hh---hcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHH---hhcCCChHHHHHHHHHHHHHHHHhCChhHHHh
Q 000369 411 SV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME---CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1610)
Q Consensus 411 ~l---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~---~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~ 484 (1610)
++ ++||-.+-..+..-|+..+...-.. ..|++.++|.++. .+.|+|+++ =--.+||..+...+|.. |.||
T Consensus 525 af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~--~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~g-F~P~ 600 (885)
T KOG2023|consen 525 AFGKYQKKNLLILYDAIGTLADSVGHALNK--PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVG-FLPY 600 (885)
T ss_pred HHHHHhhcceehHHHHHHHHHHHHHHhcCc--HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcc-cccc
Confidence 33 5899887777777777666432100 1356778888875 689999987 45678999999998865 5566
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCC
Q 000369 485 IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (1610)
Q Consensus 485 l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~ 564 (1610)
....-..-..-|..+....... ..+.. ...|.....-.+- -.. +|-
T Consensus 601 ~~~Vy~Rc~~il~~t~q~~~~~---~~~~~-----------~~~pdkdfiI~sL-DL~-------------------SGL 646 (885)
T KOG2023|consen 601 AQPVYQRCFRILQKTLQLLAKV---QQDPT-----------VEAPDKDFIIVSL-DLL-------------------SGL 646 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc---cCCcc-----------ccCCCcceEEEeH-HHH-------------------hHH
Confidence 6554443333333332211000 00000 0000000000000 000 000
Q ss_pred CCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHh-ccccchhHHHHH
Q 000369 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILV 643 (1610)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~~~lv 643 (1610)
+.+ -++ ..|.+.++. -+..=+..++.|..-..|..++--|.++.+. .+..-+.++.++
T Consensus 647 aeg-----Lg~--------------~ie~Lva~s--nl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl 705 (885)
T KOG2023|consen 647 AEG-----LGS--------------HIEPLVAQS--NLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFL 705 (885)
T ss_pred HHH-----hhh--------------chHHHhhhc--cHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 000 000 001222111 1234457888999999999999999988877 444444556666
Q ss_pred HHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchh-hHHHHHHHHHHHh--hhChhhHHH
Q 000369 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT-RAHAMKCLTTFSE--AVGPGFIFE 720 (1610)
Q Consensus 644 ~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~-r~~a~~~L~~l~e--~~~~~~v~~ 720 (1610)
.++.. .+.-.|..|...++=++..++.+.+.-.+.++..++-.|+.-+-..++ +.....+-..+.. .+.|+.|..
T Consensus 706 ~~lg~--Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 706 PILGA--NLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHhh--cCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 66642 355667788888998888888876654455555565555544433222 1111111111111 223444433
Q ss_pred HH---Hhh----hhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHhhhCh
Q 000369 721 RL---YKI----MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 721 ~l---~~~----l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~-gl~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
.+ ++. +..-+.-.-...+...+..+|.--....+ ..++-++.-. +..+....+|..-.+.+.-....+|.
T Consensus 784 ~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv--~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~ 861 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV--SSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGK 861 (885)
T ss_pred hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh--hhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Confidence 22 221 11122223355667777777643222111 2233333322 23444456788777777776677775
Q ss_pred h-HHHhhhcccHHHHHHHHHHH
Q 000369 793 D-IKGFLADVKPALLSALDAEY 813 (1610)
Q Consensus 793 ~-l~~~l~~lkp~ll~~L~~ef 813 (1610)
. -..|.+.++|..++.|...+
T Consensus 862 ~nW~~~~~qf~P~~~erl~a~y 883 (885)
T KOG2023|consen 862 INWQRFSEQFPPPLKERLQAFY 883 (885)
T ss_pred hhHHHHhhcCChhHHHHHHHHh
Confidence 4 45677889998888887643
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.39 E-value=2e-07 Score=128.87 Aligned_cols=811 Identities=15% Similarity=0.137 Sum_probs=470.3
Q ss_pred hhhhhhccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH--hhhcch
Q 000369 289 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 361 (1610)
Q Consensus 289 ~f~~~l~s~--kW~~R~eal~~L~~l~~~~---ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~--L~~~f~ 361 (1610)
.+.+++.+. +-++|+.++.+|+.+++.. +..-.+....+..|...+...+..+...|+.++..|+.. .+...-
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv 96 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL 96 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 577788755 6789999999999988432 110011123456666667655677788888888888764 222111
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhhHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 430 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~-~~~-------l~~vl~~l~~~l~~Knp---~vR~~~l~~L~~~ 430 (1610)
....+|+|++.+++.....++++..+|..+..+. +.. -..++|.+...+++.+. -++..++..|..+
T Consensus 97 --~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 97 --LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred --HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 3678999999999989999999999999987641 011 13457888888887652 2444445566555
Q ss_pred HHhCChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000369 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1610)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~ 509 (1610)
...... .....+ .-.+|.++..|.+.++.++..|..++..++...++ . +..|.+ . |
T Consensus 175 s~~~en-~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVIe---a-G----- 231 (2102)
T PLN03200 175 CGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVLD---A-G----- 231 (2102)
T ss_pred hcCccc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHHH---C-C-----
Confidence 443321 111111 23789999999999999998887777655433321 1 111111 0 0
Q ss_pred CCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000369 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1610)
Q Consensus 510 ~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1610)
T Consensus 232 -------------------------------------------------------------------------------- 231 (2102)
T PLN03200 232 -------------------------------------------------------------------------------- 231 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHHHHHHhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHH
Q 000369 590 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1610)
Q Consensus 590 s~ee~~~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~ 668 (1610)
.-+.+++.|.+ .+-..|.+|+-.|..+..... ...+.++. ..++..|.
T Consensus 232 ------------aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 232 ------------AVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred ------------CHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 00334555543 344667777766665543211 11111111 11122221
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHH
Q 000369 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1610)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~ 748 (1610)
.++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..+...+-..+...+...++..+..++..
T Consensus 281 ~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 0000 00000113455555555555422 223444444332233455566666677777655
Q ss_pred hCCCC-----CChHhHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000369 749 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1610)
Q Consensus 749 fg~~~-----l~~k~li~~l~~~gl~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~ 822 (1610)
+.... ++...+...+.++ +.+.++. |.+.+..++..+| |.. .+.+.|.+. +
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d-- 404 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E-- 404 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c--
Confidence 54321 2222344556677 7877766 4777777766655 222 111222110 0
Q ss_pred CCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000369 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1610)
Q Consensus 823 ~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~ 902 (1610)
..+-++..+...+-..+..++..|..++.+.+...+.-.-...++.|..
T Consensus 405 -------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 405 -------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred -------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0012444455555567778888887776431111110000224677888
Q ss_pred ccccccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000369 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 974 (1610)
Q Consensus 903 ~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-----l--~~ll~ 974 (1610)
.|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8888888899999999999876322111111 23589999999999999999999999988764321 1 24677
Q ss_pred HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhc
Q 000369 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1610)
Q Consensus 975 ~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1610)
.|...|+++ ++..|..++..|..++... . .+.+.+++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 888999876 5788888888887765432 1 335577777787778888888888888776655544322211 0
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhcccccc
Q 000369 1055 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134 (1610)
Q Consensus 1055 L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1610)
....-...+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111112222222110
Q ss_pred CCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHH-HHHHH-HH
Q 000369 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLD-IL 1212 (1610)
Q Consensus 1135 ~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~-~~~lD-ll 1212 (1610)
++..+..--..=+++...+.+..+.+- +.+.+ +-++.+|.+.++..+.++.-.|.....+....- ....+ -+
T Consensus 622 ---s~~ikk~Aa~iLsnL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 622 ---KEETQEKAASVLADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA 695 (2102)
T ss_pred ---CHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 000000000000122223444443321 11222 367888889999999988888888775544332 22122 25
Q ss_pred HHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCcccc
Q 000369 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT 1292 (1610)
Q Consensus 1213 lk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv 1292 (1610)
++.+...+.+.+..+...+++.|..++..-.. -.+.-..-.||.|+.-+.+..+.+|+.....+-++|..+|.+.+
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~ 771 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDV 771 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHH
Confidence 66666677889999999999999976643211 11111234689999888887788999999999999999997764
Q ss_pred H----------HHHHhcccCCchhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHhhhcCCchHHHHHH
Q 000369 1293 L----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKAA 1351 (1610)
Q Consensus 1293 ~----------~~l~~gl~sKn~r~r--~e~l~~l~~li~~-~G~~~~~~--------~k~l~~ia~~i~drd~~VR~aA 1351 (1610)
+ ..|++-|++-|.+.- .|.|+.|+.+.+. +|.+...| +-.|..+..|+.+-+|.|-..|
T Consensus 772 ~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~ka 851 (2102)
T PLN03200 772 LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKA 851 (2102)
T ss_pred HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHH
Confidence 4 345556777776654 4699999988874 34333111 2357888899999999999999
Q ss_pred HHHHHHHHHhcChH--HH-HHhhcCCHHHHHHHHHHHHhh
Q 000369 1352 LNTLATGYKILGED--IW-RYVGKLTDAQKSMLDDRFKWK 1388 (1610)
Q Consensus 1352 l~~l~~~y~~~G~~--v~-~~~g~l~~~~~~~l~er~kr~ 1388 (1610)
+..|..+ ++|+ +. .++ .-.++-.+.|-.|+=.+
T Consensus 852 i~il~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 852 IEILSRL---CRDQPVVLGDLI-ANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHH---hccChhHHHHHH-hcccchHHHHHHHHhhc
Confidence 9999865 4543 22 222 23455667777777664
No 18
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.30 E-value=1.5e-09 Score=126.34 Aligned_cols=211 Identities=19% Similarity=0.277 Sum_probs=174.6
Q ss_pred hhhhhc-cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHccC-cCHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 000369 290 FWEGVK-ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1610)
Q Consensus 290 f~~~l~-s~kW~~R~eal~~L~~l~~~~--ki~~~~~~~l~~~L~~~l~D-~n~~v~~~A~~~i~~La~~L~~~f~~~~~ 365 (1610)
....+. +.+-.+|++|+.+|..++... ......|.+|+-.+-.++.| .+......|++.|+.+.+.-...|..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333443 458889999999999977433 23456688999999999998 78888999999999999999999999999
Q ss_pred hHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhh
Q 000369 366 FLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~-~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1610)
..+-.+|+..+|+.+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...++
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 999999999999876 4556666666667665 333 334444444444444555678889999999999998999999
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcC
Q 000369 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1610)
Q Consensus 445 ~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (1610)
+++|.++++.+.+...||++|.-||.++...+|++.|.|++.+|...+++.|+-|++++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998999999999999999999998764
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.26 E-value=2.5e-07 Score=111.86 Aligned_cols=573 Identities=16% Similarity=0.189 Sum_probs=343.9
Q ss_pred HHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cC---CChH
Q 000369 328 RTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GC---LNLV 402 (1610)
Q Consensus 328 ~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-~~---~~l~ 402 (1610)
..|+.+.+ -...+-+..+++|+..+|.-+|-..-||+..++..+=+.++|..+.||.-+..|+.+++.. +. -.++
T Consensus 514 pfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fD 593 (1172)
T KOG0213|consen 514 PFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFD 593 (1172)
T ss_pred HHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHH
Confidence 33444444 2234567888999999999999988999999999999999999999999999999999987 11 1244
Q ss_pred hhHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000369 403 DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 403 ~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
.++..|..+.. |..- .=..-++.+..++.-.....-.-+..+++-.+.+-.+-+|.+..+.-.+.+..++...|-++-
T Consensus 594 sVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~ 672 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPA 672 (1172)
T ss_pred HHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHH
Confidence 55555655543 3221 111222222222222222111122344555555555666666555555555555555553221
Q ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCC
Q 000369 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (1610)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~ 561 (1610)
--..+-|. +++...- .++. ++-++.
T Consensus 673 y~r~dilp--------~ff~~fw-----------------------------~rrm-----A~drr~------------- 697 (1172)
T KOG0213|consen 673 YIRFDILP--------EFFFSFW-----------------------------GRRM-----ALDRRN------------- 697 (1172)
T ss_pred HHhhhhhH--------HHHhhhh-----------------------------hhhh-----hccccc-------------
Confidence 00111111 1110000 0000 000000
Q ss_pred CCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhc-cCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccch---
Q 000369 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS-LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ--- 637 (1610)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~-ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~--- 637 (1610)
-+...+ +.-++.+++.. -+-.-++..|.|.+-+-|...++.+..++...+..+.
T Consensus 698 ------------ykqlv~----------ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider 755 (1172)
T KOG0213|consen 698 ------------YKQLVD----------TTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER 755 (1172)
T ss_pred ------------hhhHHH----------HHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH
Confidence 000000 00111111110 0113345677888888899999999888877554331
Q ss_pred hHHHHHHHhhcCCCCC--ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--chhhHHHHHHHHHHHhhh
Q 000369 638 SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (1610)
Q Consensus 638 ~~~~lv~~l~~~p~~~--DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~ 713 (1610)
.-+-+++.+.. .|. ++.-.|+-.+|.++.. .++.-.+.+...++..++-+|-+ +++|..|.+++..++-..
T Consensus 756 leE~lidgil~--Afqeqtt~d~vml~gfg~V~~---~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 756 LEERLIDGILY--AFQEQTTEDSVMLLGFGTVVN---ALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred HHHHHHHHHHH--HHHhcccchhhhhhhHHHHHH---HHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 12334444321 122 2333355556654432 22222345566677777777766 478988888877766543
Q ss_pred ---ChhhHH----HHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCC--ChHhHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 000369 714 ---GPGFIF----ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLG 784 (1610)
Q Consensus 714 ---~~~~v~----~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l--~~k~li~~l~~~gl~~~n~~VR~aA~~ll~ 784 (1610)
+-+..+ ..|+..+ .-.-|.|.-..|..+..++.-+|.... +++.+++-+.+. |.+....|-..++.+++
T Consensus 831 ktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~IdLvg 908 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENCIDLVG 908 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHHHHHHH
Confidence 222232 3345554 567889998999999999988887643 588999999888 99999999999999998
Q ss_pred HHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC
Q 000369 785 ALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1610)
Q Consensus 785 ~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d 864 (1610)
.+... |+. | + +.|-. . .|.=+|++.|.+
T Consensus 909 ~Iadr-gpE---~------------------v-------~aREW-----------------M------RIcfeLlelLka 936 (1172)
T KOG0213|consen 909 TIADR-GPE---Y------------------V-------SAREW-----------------M------RICFELLELLKA 936 (1172)
T ss_pred HHHhc-Ccc---c------------------C-------CHHHH-----------------H------HHHHHHHHHHHH
Confidence 88632 221 0 0 00000 0 022356666766
Q ss_pred CChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
.|=.+|..|...++-|.. .|.| +|++..|.+-|+-.....+.-+--.|+-++...| +| .++|.+++-
T Consensus 937 hkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVLPalmne 1003 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhh
Confidence 677779999998887653 3555 6788888776643322222111112222223323 44 789999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCc---hhhhHH
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLK 1015 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~---~~~ll~ 1015 (1610)
+.-...+|+.-...+|.-+++.+| +-.+.|.|.++|.+. ++.-|+.+...+....-.....-+ +.+++.
T Consensus 1004 YrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence 999999999999999999998887 345788888998876 466788887777665444332211 233444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
-+...+-|.++-|-.+-.+|+..+...+|...|.+++
T Consensus 1082 ~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1082 LIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4667789999999999999999999999999999886
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.7e-09 Score=122.71 Aligned_cols=378 Identities=17% Similarity=0.210 Sum_probs=261.5
Q ss_pred cHHHHHHhhcCChHHHHHHHHHHHHHHHhccccchh--HHHHHHHhhcCC-CCCccHHHHHHHHHHHHHHHHHHcCCCch
Q 000369 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1610)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~--~~~lv~~l~~~p-~~~DsN~~V~~~~l~~l~~l~~~~~~~~~ 679 (1610)
+..+.++|.|+.+..|.+|.-++++++++.-..+.. ..-++..+...- --.+.|. ...+|-.+...+-..+.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999883222222 222333222100 0012221 12444334333332333223
Q ss_pred hhHHHHHHHHHhhhccc--hhhHHHHHHHHHHHhhhChhh------HHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCC
Q 000369 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1610)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~~------v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~ 751 (1610)
.+...+++.++..++|. ++|--|.+.|..++.....++ +|..+++.. ....+-|+ ++.+.+-.++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37888999999999984 789999999999998766543 344444432 33333333 334555555655432
Q ss_pred ---CCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccc
Q 000369 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1610)
Q Consensus 752 ---~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~ 828 (1610)
..+++..+++.++.- +-..||.+|..-..-+-.|+..-+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257889999999987 888999999988887777764433333333322
Q ss_pred cCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCC-C-ChhhHHHHHHhcccc
Q 000369 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-A-GTGELFGGLRGRLYD 906 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~-~~~eL~~~L~~~L~D 906 (1610)
+-+.|+..++|.+-.+|.-.=..+.+.+.+- +-.| . +|.+.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 2345667777777777754444445555431 1122 1 478999999999999
Q ss_pred ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000369 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (1610)
Q Consensus 907 sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~~~~---------l~~ll~~l 976 (1610)
++.-+...|+.+|.++.+--|+++-+|...++..++.++.|+.. .++..+...-..+...++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999877 577766555444444332 33677788
Q ss_pred HHHHhcCcCChhhHHHHHHHHHHHhccCCCC--CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 977 ~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
...+.+. +-+.|.++++|+.....+.+.. .+..++...++..|.|++.+|-..+-+.+..++..
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888876 5789999999999988888762 34456666799999999999999999988888754
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=9.7e-08 Score=116.80 Aligned_cols=585 Identities=15% Similarity=0.166 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHH
Q 000369 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1610)
Q Consensus 300 ~~R~eal~~L~~l~~~--~ki~~~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~f~~~--~~~llp~Ll~ 373 (1610)
--|...|+.|.-+.+. |......+.+++-++..... +++..|+..|.+|+-.--.-.+..|..- ...++....+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 4567788888777642 22112335566666655543 7788889888888876555556677633 4567888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhhHHHHHHHhhcCChHHHHHHHHHHHHHHHh-C-------------
Q 000369 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-S------------- 434 (1610)
Q Consensus 374 klkdkk~~V~~aa~~al~ai~~~~~~~l-----~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~------------- 434 (1610)
...-.-..|+.++..||..|+.-..... +.++..-+.++++.|..|..++.+|-..+.+. .
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888899999999999999886311111 23444456788999999999999988855432 1
Q ss_pred -Chh--HHH-HhhhhHHHHHHHhhc-------CCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcC
Q 000369 435 -SKA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1610)
Q Consensus 435 -~~~--~l~-~~l~~l~p~l~~~l~-------D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (1610)
++. .+. ..++.++|.|.+.|. |-+=.+-.+|-.||..+..++|+..+.+.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 110 011 223466666666662 112245566666777777777654322111
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000369 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1610)
Q Consensus 504 ~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1610)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccc--hh-HHHHHHHhhcCCCCCccHHHHH
Q 000369 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QS-VEILVRLVCMLPGWSEKNVQVQ 660 (1610)
Q Consensus 584 ~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~--~~-~~~lv~~l~~~p~~~DsN~~V~ 660 (1610)
+-+.+.+.+.+|+.|..|+-.+..++.+..+.. .. .+.+-.++. -..|++..|.
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~Vk 423 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWVK 423 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhhc
Confidence 223346677899999999999998887743321 00 011111110 1235444444
Q ss_pred HHHHHHHHHHHHHcCC--CchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHH
Q 000369 661 QQVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEG 738 (1610)
Q Consensus 661 ~~~l~~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~ 738 (1610)
...--.+..+++.++. .........++.+++-+. -.|+|-.-+
T Consensus 424 dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-----------------------------------DePrva~N~ 468 (859)
T KOG1241|consen 424 DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-----------------------------------DEPRVASNV 468 (859)
T ss_pred chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-----------------------------------hCchHHHHH
Confidence 3333333333332221 111222233333333333 344444433
Q ss_pred HHHHHHHHH---HhCCCC----CC---hHhHHHHHHhc-CCCC-CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHH
Q 000369 739 ILWMVSAVE---DFGVSH----LK---LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALL 806 (1610)
Q Consensus 739 l~~l~~~i~---~fg~~~----l~---~k~li~~l~~~-gl~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll 806 (1610)
+-.+..+.+ +-+... .. ...++.-+.+. -..| ...+.|.+|-..|++|-++...+..+....+.+.++
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il 548 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVIL 548 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 333333222 222211 11 12333333221 0122 345799999999999999888877776667777777
Q ss_pred HHHHHHHhcCCCCCCCCCCcc-ccCccCc-----C---CCCCCCCCCCCccccccccchHHHhhcCCC-ChhHHHHHHHH
Q 000369 807 SALDAEYEKNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEA 876 (1610)
Q Consensus 807 ~~L~~ef~k~~~~~~~~p~r~-~r~~~~~-----~---~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~-~Wk~R~eale~ 876 (1610)
..|+.-++...- + -..|. +..-++. + +.. +. .+-.++..|...|+..++.+ .--+-.+|+-+
T Consensus 549 ~kl~q~i~~~~l-~--~~dr~q~~eLQs~Lc~~Lq~i~rk~--~~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~la 620 (859)
T KOG1241|consen 549 EKLDQTISSQIL-S--LADRAQLNELQSLLCNTLQSIIRKV--GS---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLA 620 (859)
T ss_pred HHHHHHHHHHhc-c--HhhHHHHHHHHHHHHHHHHHHHHHc--cc---cchhHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 766665541100 0 00000 0000000 0 000 00 11234556777788888773 44456778888
Q ss_pred HHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH--HHH
Q 000369 877 VNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMR 953 (1610)
Q Consensus 877 l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~--~Vr 953 (1610)
+..++...++.+... ...+.+.|..-| +-....|...|+..++.|+++|+.+|-+|+..++..++++|....- .|.
T Consensus 621 V~tl~~~Lg~~F~ky-m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vK 699 (859)
T KOG1241|consen 621 VSTLAESLGKGFAKY-MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVK 699 (859)
T ss_pred HHHHHHHHhHhHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccccc
Confidence 888876543332222 144555555555 3345678899999999999999999999999999999999987653 477
Q ss_pred HHHHHHHHHHHHhcC--chhhHHHHHHHHhc------Cc-------CChhhHHHHHHHHHHHhccCCCC---CchhhhHH
Q 000369 954 ECTLTVLDAWLAAVH--LDKMVPYVTTALTD------AK-------LGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLK 1015 (1610)
Q Consensus 954 ~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~------~~-------~~~~~R~~~l~~L~~~l~~~~~~---~~~~~ll~ 1015 (1610)
-+...+...++-.+| .+.-+..+...|+. +. +.-.+|..+++.-.-.+..+... ..+.+.+.
T Consensus 700 P~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~ 779 (859)
T KOG1241|consen 700 PAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVP 779 (859)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchH
Confidence 777888888887776 22333333333331 11 11237888777766666666532 22334444
Q ss_pred HHHHh---c--CCC-CHHHHHHHHHHHHHHHHHhChHHHH
Q 000369 1016 PASIA---M--TDK-SSDVRKAAEACIVEILRAGGQETIE 1049 (1610)
Q Consensus 1016 pl~~~---L--~D~-~~dVR~aA~~~l~~l~~~~G~~~~~ 1049 (1610)
+++.. + ++. +..+-.+|...++-+...+|.+...
T Consensus 780 ~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 780 HIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 44432 2 333 3566777888888999999976444
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.18 E-value=4.3e-08 Score=116.14 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=139.5
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChh--H-----
Q 000369 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA--V----- 930 (1610)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~--~----- 930 (1610)
+...+.++.-|+-...+.-++.|+..+..++.+..+--++--|...|+..|+.++..|-.+++.|+.+.|+. +
T Consensus 693 ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Lln 772 (975)
T COG5181 693 LTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLN 772 (975)
T ss_pred ccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHh
Confidence 334455666677777788888887654444444323334555666667788889999999999999888862 0
Q ss_pred --------------------HHhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhc
Q 000369 931 --------------------EKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTD 982 (1610)
Q Consensus 931 --------------------~~~~--~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~ 982 (1610)
..|. -.++|.++.-+.-...+|+.-...++.-|++.+| +-.+.|.|.++|.+
T Consensus 773 nLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD 852 (975)
T COG5181 773 NLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD 852 (975)
T ss_pred cchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 0111 1467777777777888899999999999988877 23467888888887
Q ss_pred CcCChhhHHHHHHHHHHHhccCCCCCc---hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 983 AKLGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 983 ~~~~~~~R~~~l~~L~~~l~~~~~~~~---~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
. +|.-|+.+.+.+..+.-+.+...+ +..++.-+...+-|.++-|-.+-.+++..|..++|...|.+++
T Consensus 853 r--D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 853 R--DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred c--chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6 577788888888766655544222 2344444667889999999999999999999999999999987
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6e-07 Score=110.10 Aligned_cols=629 Identities=15% Similarity=0.186 Sum_probs=376.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCc-C-HHHHHHHHHHHHH-HHH---Hhhh-----
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV-N-IAVAVEAIQAIGN-LAR---GLRT----- 358 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~-n-~~v~~~A~~~i~~-La~---~L~~----- 358 (1610)
+.++.-+.+-.+|+.|-+.|.++.+ +|+...+..|..++.|. + ..++..|.-.++. |.. ....
T Consensus 6 ~le~tlSpD~n~~~~Ae~~l~~~~~------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 6 LLEKTLSPDQNVRKRAEKQLEQAQS------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHh------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 4455567778889998888887653 57889999999988733 3 3344444333332 111 0111
Q ss_pred --cchhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hHhhHHHHHHHhhcCCh-HHHHHHHHHHHHHH
Q 000369 359 --HFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVP-LVRSLTLNWVTFCI 431 (1610)
Q Consensus 359 --~f~~~~~-~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~---l~~vl~~l~~~l~~Knp-~vR~~~l~~L~~~l 431 (1610)
.+...++ ++-..++..++.+-+.....|.+|+.+|... -.+ -+.+++.+.....+..+ .+|+.++..+..+-
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic 158 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC 158 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 1233333 4445567778889999999999999999876 122 23455555555544445 59999999999999
Q ss_pred HhCChhHHHHhhhhHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000369 432 ETSSKAAVLKVHKDYVPICMECL--NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1610)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~~~l--~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~ 509 (1610)
+...+..+......++-+++.++ +.++..||-+|..||---+...+.. |+. +.-|.-|.+.
T Consensus 159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n-F~~------E~ern~iMqv---------- 221 (859)
T KOG1241|consen 159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN-FNN------EMERNYIMQV---------- 221 (859)
T ss_pred ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh-hcc------Hhhhceeeee----------
Confidence 98888877777788888888887 7889999999999886555554410 110 0001111100
Q ss_pred CCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000369 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1610)
Q Consensus 510 ~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1610)
T Consensus 222 -------------------------------------------------------------------------------- 221 (859)
T KOG1241|consen 222 -------------------------------------------------------------------------------- 221 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHh-ccccchhH-HHHHH-HhhcCCCCCccHHHHHHHHHHH
Q 000369 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSV-EILVR-LVCMLPGWSEKNVQVQQQVIEV 666 (1610)
Q Consensus 590 s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~-~~lv~-~l~~~p~~~DsN~~V~~~~l~~ 666 (1610)
+.+.=.+.+-+.|.+|++.|.++..- ..-...+. +.++. ++. +++..|-+|.-+++|+
T Consensus 222 ----------------vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~---amks~~deValQaiEF 282 (859)
T KOG1241|consen 222 ----------------VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLA---AMKSDNDEVALQAIEF 282 (859)
T ss_pred ----------------eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCcHHHHHHHHHH
Confidence 00000111223455555555555433 11111111 22222 222 4667788899999999
Q ss_pred HHHHHHH-------cC------------CCchhhHHHHHHHHHhhhccc---------hhhHHHHHHHHHHHhhhChhhH
Q 000369 667 INYLAAT-------AT------------KFPKKCVVLCLLGISERVADI---------KTRAHAMKCLTTFSEAVGPGFI 718 (1610)
Q Consensus 667 l~~l~~~-------~~------------~~~~~~~~~il~~LveKlgd~---------K~r~~a~~~L~~l~e~~~~~~v 718 (1610)
|..+.+. .+ .|.+..+..++|.|++.|..- ..-.+|.-||..+++.++-+ +
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-I 361 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-I 361 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-c
Confidence 9865431 01 123345567889998887641 23567888999999987754 4
Q ss_pred HHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCCCCCChHhH----HHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhC
Q 000369 719 FERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1610)
Q Consensus 719 ~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~l----i~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G 791 (1610)
++.+++++. ++.+|+-|..+...+..+++ |.....++++ ++.+..+ +.|++--||+.+...++.+..++.
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~l-m~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINL-MSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHH-hcCchhhhcchHHHHHHHHHhhch
Confidence 456666543 57889999999999988885 4433333333 3444555 678888999999999999998877
Q ss_pred hhHH--HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhh--cCC-CC
Q 000369 792 PDIK--GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS--LES-PD 866 (1610)
Q Consensus 792 ~~l~--~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~--l~d-~~ 866 (1610)
.... .++...-+.+++.+.++=.-..+ ..=+-...+.........+ +..+... .....|...|++. ..| ..
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~DePrva~N-~CWAf~~Laea~~eA~~s~-~qt~~~t--~~y~~ii~~Ll~~tdr~dgnq 514 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDEPRVASN-VCWAFISLAEAAYEAAVSN-GQTDPAT--PFYEAIIGSLLKVTDRADGNQ 514 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhCchHHHH-HHHHHHHHHHHHHHhccCC-CCCCccc--hhHHHHHHHHHhhccccccch
Confidence 5432 24455555555555553100000 0000000000000000000 0000000 1122233445443 233 35
Q ss_pred hhHHHHHHHHHHHHHHHccccCCCCChhhHHH--------HHH-hcc--cccc--HhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFG--------GLR-GRL--YDSN--KNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 867 Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~--------~L~-~~L--~Dsn--~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
-.-|..|.+.|.+++..+.....+. ...+.. .+. +.+ .|.. ..+...=|.+|+.+...+|+++.++
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~-v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~ 593 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPM-VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV 593 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH
Confidence 7789999999999997532211111 011111 111 122 2221 2233444889999999999999999
Q ss_pred hhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 934 SKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 934 ~~~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
...++..++..+.. ....|.+.|.-++.+++.++| +..+.|++...|++-. ..++-..+.+....+...+..
T Consensus 594 ~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 594 SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-EYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988 445688999999999999987 4667778888886432 234445555655554444433
Q ss_pred C--CchhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1007 F--PDAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1007 ~--~~~~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
. +....++.-++.||... +.+|+-.--.+++-|...+|.+ |.+++
T Consensus 673 ~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl 721 (859)
T KOG1241|consen 673 DILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYL 721 (859)
T ss_pred hhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHH
Confidence 1 22344445578888554 6688888889999999999974 77776
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.11 E-value=8e-07 Score=105.70 Aligned_cols=569 Identities=19% Similarity=0.232 Sum_probs=338.2
Q ss_pred hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCc--
Q 000369 127 DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD-- 202 (1610)
Q Consensus 127 ~~v~~~L~~~l-~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~-- 202 (1610)
+.++..|.... +.|.|+.+-.|+.++.++-.-.|..+++ ++++++.+.+++.|...-||=.+...+-.++...|+=
T Consensus 315 ~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi 394 (975)
T COG5181 315 EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI 394 (975)
T ss_pred HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch
Confidence 33444443333 4579999999999999999999998876 8999999999999999999998888888888888762
Q ss_pred -hhhHH---HhhhChHHHHHHHHHHHHhcCCCCCCc---cc----chhhhhHhhhhhccccCCCCCCCCCCC--------
Q 000369 203 -PVKTI---LFEKMRDTMKKELEVELVNVSGTARPT---RK----IRAEQDKELGQELISEDVGPGPSEEST-------- 263 (1610)
Q Consensus 203 -~~~~~---l~~~lk~~q~kele~~f~~~~~~~~p~---r~----~rs~~~~~~~~~a~~~~~~~~~~~~~~-------- 263 (1610)
.+... |.++....-=++|-..+... |-.-|. .| +|..... .-++- . .++++..
T Consensus 395 e~fd~vl~pLw~g~~~hrgk~l~sfLkA~-g~iiplm~peYa~h~tre~m~i-v~ref--~----spdeemkk~~l~v~~ 466 (975)
T COG5181 395 EQFDEVLCPLWEGASQHRGKELVSFLKAM-GFIIPLMSPEYACHDTREHMEI-VFREF--K----SPDEEMKKDLLVVER 466 (975)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHh-ccccccCChHhhhhhHHHHHHH-HHHHh--C----CchhhcchhHHHHHH
Confidence 11111 11222222222332222221 111120 01 1111100 00000 0 0000000
Q ss_pred -CCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHH
Q 000369 264 -ADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLK 331 (1610)
Q Consensus 264 -~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~ea---------l~~--L~~l~~~~ki~~~~~~~l~~~L~ 331 (1610)
=...+.++|+-+.+.| . ++|+ +..|.+|.+. +.. |.+.... ..+++.+.
T Consensus 467 ~C~~v~~~tp~~lr~~v------~-pefF----~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil 527 (975)
T COG5181 467 ICDKVGTDTPWKLRDQV------S-PEFF----SPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKIL 527 (975)
T ss_pred HHhccCCCCHHHHHHhh------c-HHhh----chHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHH
Confidence 0011223454444322 1 2443 4569888765 111 1111111 23455555
Q ss_pred HHccCcCHHHHHHHHHHHHHHHHHhhh-cch-hhhhhHHHHHHHHhccCcHHHHH------HHHHHHHHHHHhcCCChHh
Q 000369 332 KLITDVNIAVAVEAIQAIGNLARGLRT-HFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVD 403 (1610)
Q Consensus 332 ~~l~D~n~~v~~~A~~~i~~La~~L~~-~f~-~~~~~llp~Ll~klkdkk~~V~~------aa~~al~ai~~~~~~~l~~ 403 (1610)
.-+.|.--..+..++.++..+...++. +|+ .....++-.++..|.+....+.- +...+++...+ ..+..
T Consensus 528 ~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k---p~l~~ 604 (975)
T COG5181 528 EYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK---PHLSM 604 (975)
T ss_pred hhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC---cchHH
Confidence 556676655666777777777777754 465 66778888999999876543321 11222222221 45678
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHH---HHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh-
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR- 479 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~- 479 (1610)
++..++..|+||.|.+|+.++..+..+ +..|..... +..+--++...|+.-+|+|=-.-..|+..|..+.|.+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 888889999999999999887776654 344544322 3445567889999999999999999999999999977
Q ss_pred ---hHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCC
Q 000369 480 ---PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556 (1610)
Q Consensus 480 ---~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~ 556 (1610)
++..+++.|.|..|.|=+...... +. .+. .. +..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nt------------i~---------------lvg-----~I-~~~---------- 718 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANT------------IA---------------LVG-----TI-CMN---------- 718 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhH------------HH---------------HHH-----HH-Hhc----------
Confidence 566677777777666544322110 00 000 00 000
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccc
Q 000369 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (1610)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~ 636 (1610)
+ +.-.+..|--. +.-+++..|.+.|=..|-.|.+.+.=+-+..++.+
T Consensus 719 ------------~----------------peyi~~rEWMR-----IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd 765 (975)
T COG5181 719 ------------S----------------PEYIGVREWMR-----ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD 765 (975)
T ss_pred ------------C----------------cccCCHHHHHH-----HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH
Confidence 0 00111222110 12356666777666677777766653322221110
Q ss_pred ----------------hhH-HHHHHHhhc-------CC----CCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000369 637 ----------------QSV-EILVRLVCM-------LP----GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1610)
Q Consensus 637 ----------------~~~-~~lv~~l~~-------~p----~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~ 688 (1610)
..| .+-+.+..+ .| .+.-+|..|++..|..+..+.+..++.+..+++.+.|-
T Consensus 766 vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPl 845 (975)
T COG5181 766 VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPL 845 (975)
T ss_pred HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000 000111110 11 13347888999999999999988788888899999999
Q ss_pred HHhhhccc--hhhHHHHHHHHHHHhhhCh---hhHHHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000369 689 ISERVADI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1610)
Q Consensus 689 LveKlgd~--K~r~~a~~~L~~l~e~~~~---~~v~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li 760 (1610)
|-+.+.|. -.|+.|..++.-++=.++. +-.+-+++..++ -..+|-|+....+.+..+-.-.|. ..+.
T Consensus 846 leDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m 920 (975)
T COG5181 846 LEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMM 920 (975)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHH
Confidence 99999984 4689999888887755332 222223333222 246788877666655555444455 3688
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhh---hcccHHHHHHHH
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l---~~lkp~ll~~L~ 810 (1610)
.++.. ||-|+...||+.--..+-.+|.+-...+-+|+ ++++|..+++|.
T Consensus 921 ~Yv~q-GLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 921 KYVQQ-GLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHHHH-hccCchHHHHHHHHHHHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 88887 69999999999999999999988877777666 667787777654
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=6e-06 Score=108.05 Aligned_cols=285 Identities=14% Similarity=0.159 Sum_probs=191.9
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchh
Q 000369 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1610)
Q Consensus 128 ~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~---~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~ 204 (1610)
.+.+.|..+..+-||..+.+.+-||...++.-|. .+...+.|......+++|.|.=+.+.|..-++-+|- +|+..+
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDSSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCchh
Confidence 4556667788899999999999999999988884 344578899999999999999999998887777773 444323
Q ss_pred hHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhcc--ccCCCCCCCCCCCCCCCCCCCCccCCCccccc
Q 000369 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI--SEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (1610)
Q Consensus 205 ~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl 282 (1610)
+..| .+.|-.-|-. |..+-. +. .+.+.. ...-|.+ +.+..+.-
T Consensus 897 k~~L--------V~sL~~tl~~--Gkr~~~------~v--s~eTelFq~G~Lg~T-------p~Gg~isT---------- 941 (1702)
T KOG0915|consen 897 KKSL--------VDSLVNTLTG--GKRKAI------KV--SEETELFQEGTLGKT-------PDGGKIST---------- 941 (1702)
T ss_pred HHHH--------HHHHHHHHhc--cccccc------ee--ccchhcccCCcCCCC-------CCCCcchH----------
Confidence 3322 2333222211 211100 00 000000 0000100 01111211
Q ss_pred CcCccchhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcch
Q 000369 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1610)
Q Consensus 283 ~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~ 361 (1610)
.++|..|++.- +-.+++-.+...-+ .+-=+-...|+.-++.|++.-+...+
T Consensus 942 -----------------------YKELc~LASdl-----~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 942 -----------------------YKELCNLASDL-----GQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred -----------------------HHHHHHHHhhc-----CChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 13344444210 01133333333222 11111256677777777887788899
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~----~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
||.+.++|-|...=-|..+.|+++....-++++.-. ...+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999999999999999998888777776421 1236688999999999999999999999999999998888
Q ss_pred HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 438 ~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
.+.+.++.+-.++...++|-...||+||-++...+.++.
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999988877666553
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.1e-07 Score=110.48 Aligned_cols=403 Identities=14% Similarity=0.160 Sum_probs=277.7
Q ss_pred hHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHH
Q 000369 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1610)
Q Consensus 717 ~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~-~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1610)
.+++++........+..-|.+.|..+..+.-..|.+... +..+++-+..+ +.|++..||.-|.+.+-.+.+.....+.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555544333333333558888888887777765322 34556556664 9999999999998887777666555555
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHH
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1610)
.|++.+-. .+-|+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFd--------vL~klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFD--------VLCKLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHH--------HHHHHhc---------------------------------------------CCccccc-cHHH
Confidence 55543322 2222211 1111111 1112
Q ss_pred HHH----HHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHH
Q 000369 876 AVN----KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (1610)
Q Consensus 876 ~l~----~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~ 951 (1610)
-+. +|+.+. .-+.+ +.++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|...+++.+++.|+|+...
T Consensus 147 LLdRLikdIVte~--~~tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTES--ASTFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccc--ccccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 222 222211 00222 58899999999999999999999999988887777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--CchhhhHHHHHHhcC
Q 000369 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (1610)
Q Consensus 952 Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (1610)
||+-+..++..+...+. .+++++.+..-++++ .|..+.-++.|+.+++.-.+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999987652 456777778778776 6899999999999987665542 233455566888998
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (1610)
Q Consensus 1023 D~~~-dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1610)
|... .++..|+..=..++..++.+....-
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-------------------------------------------------- 331 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE-------------------------------------------------- 331 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc--------------------------------------------------
Confidence 8766 5777776554444444443211100
Q ss_pred CCcccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhcc
Q 000369 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (1610)
Q Consensus 1102 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s 1181 (1610)
++ -+.-+| -+...+++
T Consensus 332 --------------------------------------------------id--~~~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 332 --------------------------------------------------ID--YGSIIE------------VLTKYLSD 347 (675)
T ss_pred --------------------------------------------------cc--hHHHHH------------HHHHHhhc
Confidence 00 000111 23334445
Q ss_pred ccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHH
Q 000369 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (1610)
Q Consensus 1182 ~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l 1261 (1610)
..-..|+++++=+.-.....+-.++.+.|-+|.-+..-+.|+.--|+.+.|+.++.+..--...+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567888888888888888888888899999999999999999999999999998654433332 26788888
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHhcCCccccHHHHHhcc
Q 000369 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300 (1610)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv~~~l~~gl 1300 (1610)
++..-+-+--++.+--=|++++|....+.+||.-+.+-+
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888877666677777888999999999999999766544
No 27
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-06 Score=111.45 Aligned_cols=559 Identities=17% Similarity=0.130 Sum_probs=331.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000369 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k 374 (1610)
...+-..|..+...+..+.-..+.... -..+.+.+...+ |.+..|...+..=++.+....+ -..|...++|.+...
T Consensus 92 ~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 92 SNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELL 167 (759)
T ss_pred Cchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhh
Confidence 344556666666666544311111111 346777777777 7777666655554444444322 235677888888888
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHh---hcCCh-HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH
Q 000369 375 LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV---KNKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1610)
Q Consensus 375 lkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l---~~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1610)
.-+....||+++.+++..+... .+-....+.+...+ ...-| +.|.-++..+..+....+...+ -.++.|..
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~~ 242 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPIV 242 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHHH
Confidence 8888899999999999998865 23222233333222 22222 3455666777766665553323 25677888
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 000369 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASE 530 (1610)
Q Consensus 451 ~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~ 530 (1610)
.....|..+.||.++.+-++.+.+.++..... ..+.+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~---------------------------------------- 279 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLP---------------------------------------- 279 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccH----------------------------------------
Confidence 89999999999999999999999888752210 00000
Q ss_pred chhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHh
Q 000369 531 SSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQL 610 (1610)
Q Consensus 531 ~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L 610 (1610)
.++...
T Consensus 280 --------------------------------------------------------------------------~~~~L~ 285 (759)
T KOG0211|consen 280 --------------------------------------------------------------------------TLIQLL 285 (759)
T ss_pred --------------------------------------------------------------------------HHhhhh
Confidence 011111
Q ss_pred hcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 000369 611 KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGIS 690 (1610)
Q Consensus 611 ~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~Lv 690 (1610)
.|..=..|+.|++.+......+...+.....+...+.. -..|.+..+.-..-+....+....+. . ..-....+...
T Consensus 286 ~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~~ 361 (759)
T KOG0211|consen 286 RDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPVS 361 (759)
T ss_pred hcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhHH
Confidence 11112345555555554444422211111111111100 02344444433333333333332222 0 11112334445
Q ss_pred hhhccch--hhHHHHHHHHHHHhhhC----hhhHHHHHHhhh---hcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHH
Q 000369 691 ERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1610)
Q Consensus 691 eKlgd~K--~r~~a~~~L~~l~e~~~----~~~v~~~l~~~l---~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~ 761 (1610)
+-++|.. .|.++..-...+++..+ +....+.+++.+ ..+.|+.|+......+......+|.. -.+..+++
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~llp 440 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELLP 440 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccCh
Confidence 5556643 34444444445555444 444444444432 45788888888777766666666642 12445666
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCC
Q 000369 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1610)
Q Consensus 762 ~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~ 841 (1610)
..... +.+-.+.||..-+..+..+-..++ +.+ +
T Consensus 441 ~~~~~-l~de~~~V~lnli~~ls~~~~v~~------------------------v~g---------~------------- 473 (759)
T KOG0211|consen 441 LLIGN-LKDEDPIVRLNLIDKLSLLEEVND------------------------VIG---------I------------- 473 (759)
T ss_pred hhhhh-cchhhHHHHHhhHHHHHHHHhccC------------------------ccc---------c-------------
Confidence 66665 788888888776643311111110 000 0
Q ss_pred CCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHH
Q 000369 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1610)
Q Consensus 842 ~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~ 921 (1610)
+ -++..+.+.+...-.|.+|+.|.+.++.+..++......+.. ..+...+...+.|.-..++..|.+.+..
T Consensus 474 -~-----~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 474 -S-----TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred -h-----hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 0 001112233444445669999999999999888653211111 2234444566777777889999999999
Q ss_pred HHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCcCChhhHHHHHHHH
Q 000369 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (1610)
Q Consensus 922 la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l----~~ll~~l~~~L~~~~~~~~~R~~~l~~L 997 (1610)
++...|..+ +...++|.++...++.+-.+|.+...++..++..+|- +.++|.+.....++ +|.+|..++..|
T Consensus 545 l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L 620 (759)
T KOG0211|consen 545 LVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHL 620 (759)
T ss_pred HHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHH
Confidence 999999554 3457899999999998888999999999999999983 45677777666666 689999999999
Q ss_pred HHHhccCCCCCchhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCh
Q 000369 998 SKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
...+..+.. +.....+.|+..+| .|.+.|||-.|..++..+..+.-+
T Consensus 621 ~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 621 PKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred HHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 987766543 23456777766655 899999999999999888766544
No 28
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=7.3e-09 Score=115.38 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=159.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
-..++.+++|....++|..|+.|. -++......+.+++-.+.+-+++.|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987 4666666678888888888899999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh-hHHHHhhhhHH
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (1610)
-.|+.+-.+.|..|++.+..||.++..+ .++..+++.|..+++|.||.+|..++.-+.+|+...+- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999888777777776542 12224556788
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 448 PICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 448 p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
+.+..-+.|.-+++|++|...+.....++
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHHH
Confidence 99999999999999999987765554443
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=0.00052 Score=89.29 Aligned_cols=648 Identities=15% Similarity=0.176 Sum_probs=351.7
Q ss_pred CChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhc-ch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000369 321 GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~-f~-~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~ 396 (1610)
..|+++.+.|...+. .+|-.|...++.|++.|-..-... +. +-....+-.++.-.-++++.||.++..++.+++.+
T Consensus 89 ~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 89 AKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcC
Confidence 457788888888887 889999999999999987764322 33 33566777888888899999999999999999986
Q ss_pred cCCChHhhHH-------HHHHHhhcC-ChHHHH---HHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHH
Q 000369 397 GCLNLVDVVE-------DVKTSVKNK-VPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAA 465 (1610)
Q Consensus 397 ~~~~l~~vl~-------~l~~~l~~K-np~vR~---~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA 465 (1610)
+++.++..-| ..+..+..+ ++..-. .+|..|...+..|+...+ +.++..+..++.-++..|+-.+
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li----~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLI----KSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHH----HHHHHHHHhhcccchHHHHHHH
Confidence 4443322111 111222211 122223 334445555556665544 8889999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcc---hhhhhhhcccc
Q 000369 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASES---SFVRKSAASML 542 (1610)
Q Consensus 466 ~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~---~~~~~~~~s~~ 542 (1610)
++|+..+.+.-.. .|+...-.++-.++-..+ |+.. .+- ... ....+....
T Consensus 245 ~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~-~t~~W~~v~~~~~~~-- 297 (1176)
T KOG1248|consen 245 LQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDL-LTVAWLKVLNEAHDI-- 297 (1176)
T ss_pred HHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chH-HHHHHHHHHHHHHHH--
Confidence 9999877765443 222222222222221111 1100 000 000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHH
Q 000369 543 SGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAI 622 (1610)
Q Consensus 543 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~ 622 (1610)
. ..+..|-+...+..++ +-+.+ +..+.-++++++.
T Consensus 298 ----------------------------------l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~~q~a 332 (1176)
T KOG1248|consen 298 ----------------------------------L---------ATLQEEKALQALPRLF-SLFFT-ILESLIEELVQAA 332 (1176)
T ss_pred ----------------------------------H---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHHHHHH
Confidence 0 0001122222222233 23445 5666677777766
Q ss_pred HHHHHHH-Hhccc-cchhHHH-HHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhh--ccch
Q 000369 623 SSLRQQV-EAVQN-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV--ADIK 697 (1610)
Q Consensus 623 ~~L~~~~-~~~~~-~~~~~~~-lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKl--gd~K 697 (1610)
.+....+ +..-. .+..|.. +-.+|.. .-..|...+|+++..+.+.|+..+...+-.+|-.|...= +|.-
T Consensus 333 ~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~ 406 (1176)
T KOG1248|consen 333 SQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFF 406 (1176)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCc
Confidence 6544333 32111 1122332 2222221 122467778888888888888777777777777776632 2333
Q ss_pred hhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-CC--ChHhHHHHHHhc-----CCC
Q 000369 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL--KLKDLIDFCKDT-----GLQ 769 (1610)
Q Consensus 698 ~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-~l--~~k~li~~l~~~-----gl~ 769 (1610)
.+....+++.+...+.||+.|+..+==.+ ++-.....=.||--++.++-.. .+ -...+++...++ ++.
T Consensus 407 ~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~ 482 (1176)
T KOG1248|consen 407 HKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLK 482 (1176)
T ss_pred cHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56677788888888999987766552111 2222333345676677665331 11 112233332211 011
Q ss_pred CCcHHH---HHHHHHHHHHHHhhhC--hhHHHhhh--------------cccHHHHHHHHHHHhcCC-------------
Q 000369 770 SSAAAT---RNATIKLLGALHKFVG--PDIKGFLA--------------DVKPALLSALDAEYEKNP------------- 817 (1610)
Q Consensus 770 ~~n~~V---R~aA~~ll~~Ly~~~G--~~l~~~l~--------------~lkp~ll~~L~~ef~k~~------------- 817 (1610)
...-.+ +.-.-++..-|-.|.- -++..-|. ++.+.+...|..-.+.+.
T Consensus 483 ~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s 562 (1176)
T KOG1248|consen 483 EAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLS 562 (1176)
T ss_pred hccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHh
Confidence 111111 1111111111111110 01111112 233333333333333321
Q ss_pred -------------CCCCCCCCccc-----------c------CccCc-----CCC---CCCCCCC---------------
Q 000369 818 -------------FEGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG--------------- 844 (1610)
Q Consensus 818 -------------~~~~~~p~r~~-----------r------~~~~~-----~~~---~~~~~d~--------------- 844 (1610)
+..+++..|.. + ..... .+. +++.++.
T Consensus 563 ~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~ 642 (1176)
T KOG1248|consen 563 NDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIA 642 (1176)
T ss_pred hhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHh
Confidence 00011111100 0 00000 000 0000000
Q ss_pred ----CCccccccccchHHHhhcC-CCChhHHHHHHHHHHHHHHHc-cccCCCCChhhHHHHHHhccccccHhHHHHHHHH
Q 000369 845 ----LPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 918 (1610)
Q Consensus 845 ----~pr~dIs~~l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a-~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~ 918 (1610)
.+...++... ++..... ..+-++++.+.+-|..++... ..........+++..|.+-+.++....+...|.|
T Consensus 643 ~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~ 720 (1176)
T KOG1248|consen 643 LAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKC 720 (1176)
T ss_pred hhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 0000011100 1111222 236677778888888777530 0111112246788888888888888899999999
Q ss_pred HHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hc---C-------chhhHHHHHHHHhcCcCC
Q 000369 919 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--AV---H-------LDKMVPYVTTALTDAKLG 986 (1610)
Q Consensus 919 l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~--~~---~-------l~~ll~~l~~~L~~~~~~ 986 (1610)
+..|...++..+..+....+|-++-.+++-+..-|+.+.+||-.+.. .. | +..+++.|..++..+ .
T Consensus 721 L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~ 798 (1176)
T KOG1248|consen 721 LKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--S 798 (1176)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--H
Confidence 99999999988888888999988888899999999999999998883 21 2 344555666665543 2
Q ss_pred hhhHHHHHHHHHHHhccCCC---CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh
Q 000369 987 AEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1610)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1610)
...+...+-.+...+.+... ..-+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 33444434444444444332 2234455666778899999999999999999999999998888887655444
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=1.2e-06 Score=118.77 Aligned_cols=268 Identities=18% Similarity=0.145 Sum_probs=149.2
Q ss_pred HHHHhhhcc--chhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000369 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1610)
Q Consensus 687 ~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~ 764 (1610)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ ++.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 346766666666543 233455555543 677788887777777665432111 12233
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHhhhCh--hHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCC
Q 000369 765 DTGLQSSAAATRNATIKLLGALHKFVGP--DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1610)
Q Consensus 765 ~~gl~~~n~~VR~aA~~ll~~Ly~~~G~--~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~ 842 (1610)
.+ |++.++.||.+|+..|+.+.. |. .+...|.+-.+......-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc--------------------------
Confidence 44 677788888888777776531 11 011112221221111111111110
Q ss_pred CCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHH
Q 000369 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1610)
Q Consensus 843 d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~l 922 (1610)
. -.+.++..+.|.++.+|..+.+.|..+-... ...+..|...++|.+..|+..|+..|+.+
T Consensus 742 ---~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 742 ---D-------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ---c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 0 0123455677777888887777776553210 22245566667777777777777766655
Q ss_pred HHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhc
Q 000369 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1610)
Q Consensus 923 a~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1610)
.. . ..+.+.++..+.|....||.+|..+|..+ +-...++.|...|+++ ++.+|..++..|..+
T Consensus 803 g~----~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~-- 865 (897)
T PRK13800 803 GC----P-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW-- 865 (897)
T ss_pred CC----c-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc--
Confidence 21 1 12334567777777777888877777543 3345557777777766 577788777777652
Q ss_pred cCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHH
Q 000369 1003 GLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1610)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1610)
. ........+...++|.+++||.+|..+|.
T Consensus 866 --~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 --P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11223344667777888888888877764
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=0.0052 Score=80.39 Aligned_cols=238 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCC
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~ 840 (1610)
...... ..++++.|+.-+..+|.++-.. +....+..+....+.+.+-+-|+.
T Consensus 657 ~v~~~~-e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs------------------------- 708 (1176)
T KOG1248|consen 657 TVDPEF-ENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQS------------------------- 708 (1176)
T ss_pred HhhHHh-hccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhc-------------------------
Confidence 334444 5666899999999999988765 333333322222233333332222
Q ss_pred CCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHH
Q 000369 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (1610)
Q Consensus 841 ~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~ 920 (1610)
..--.|...+..|..|+...+.....-....+..++... +|-|...++.|..||.
T Consensus 709 ------------------------~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 709 ------------------------SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLV 763 (1176)
T ss_pred ------------------------cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHH
Confidence 222245566777777776432111110112222333223 8888888999999888
Q ss_pred HHHH--H---hChhH-HHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCCh
Q 000369 921 AVAS--A---MGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGA 987 (1610)
Q Consensus 921 ~la~--~---lg~~~-~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~ 987 (1610)
.|+. . .|.+= ...+..+++.|...+......++.+-+-++..++..-+ +..++..+.-.|.+. ++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sr 841 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SR 841 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CH
Confidence 8882 1 23221 22455666666666655566666665777777775432 455666777777765 69
Q ss_pred hhHHHHHHHHHHHhccCCC---CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhh
Q 000369 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1610)
+++..++.++..++...+. .++...++..+...+.|.+..+|.+.+..+..+++.+|.+.+..++.
T Consensus 842 eI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 842 EIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 9999999999998888776 23334444557778899999999999999999999999999998875
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=0.00013 Score=94.45 Aligned_cols=503 Identities=17% Similarity=0.191 Sum_probs=275.1
Q ss_pred hhhhhccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000369 290 FWEGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1610)
Q Consensus 290 f~~~l~s~--kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ 366 (1610)
+.+.+++. +-.+|++++..|..+. .+. +...++..+.+.+...+..+.+.+--.+..++. .=...+..
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLIL 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHH
Confidence 33344555 6778899999887754 332 233344555566676677655555444443332 22235778
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh-
Q 000369 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD- 445 (1610)
Q Consensus 367 llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~- 445 (1610)
+...+.+-+.++++.++..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+.. ++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~ 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDE 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGG
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHH
Confidence 899999999999999999888888887643 335667888889999999999999999999998874332 233
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~ 525 (1610)
+++.+.+++.|.++.|+.+|..++..+ +. .++....++..+ -..+...+.. +..-.
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~----~~~L~~~l~~---------~~~~~--------- 208 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKL----IRILCQLLSD---------PDPWL--------- 208 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHH----HHHHHHHHTC---------CSHHH---------
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHH----HHHhhhcccc---------cchHH---------
Confidence 799999999999999999999999888 21 111111122221 1222222200 00000
Q ss_pred CCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHH
Q 000369 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD 605 (1610)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~ 605 (1610)
.-..-....... ....++... ..+-+.
T Consensus 209 ---------q~~il~~l~~~~-----------------------------------------~~~~~~~~~---~~~i~~ 235 (526)
T PF01602_consen 209 ---------QIKILRLLRRYA-----------------------------------------PMEPEDADK---NRIIEP 235 (526)
T ss_dssp ---------HHHHHHHHTTST-----------------------------------------SSSHHHHHH---HHHHHH
T ss_pred ---------HHHHHHHHHhcc-----------------------------------------cCChhhhhH---HHHHHH
Confidence 000000000000 001111100 112245
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~i 685 (1610)
+...|.+.++..+.+++..+..+.....-.....+.+.+++. +++..+.-.+++.+..++...+.... .....
T Consensus 236 l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~ 308 (526)
T PF01602_consen 236 LLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-hhhhh
Confidence 667777888888888888777443222111112344444442 33333555667766666554311111 01111
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHh
Q 000369 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (1610)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~ 765 (1610)
+ ..+..-.|.-+|..+.++|..++.......++.++.+++.....+.++.+++..+..+...|.. +....++.+.+
T Consensus 309 ~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~ 384 (526)
T PF01602_consen 309 L-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLK 384 (526)
T ss_dssp H-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHH
T ss_pred h-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHH
Confidence 1 1111122334566667777777766666666666666653344555666666666666665532 22333344433
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCC
Q 000369 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1610)
Q Consensus 766 ~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~ 845 (1610)
+ +...+..|+..+
T Consensus 385 l-l~~~~~~~~~~~------------------------------------------------------------------ 397 (526)
T PF01602_consen 385 L-LEISGDYVSNEI------------------------------------------------------------------ 397 (526)
T ss_dssp H-HHCTGGGCHCHH------------------------------------------------------------------
T ss_pred h-hhhccccccchH------------------------------------------------------------------
Confidence 3 333333333222
Q ss_pred CccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHH
Q 000369 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVAS 924 (1610)
Q Consensus 846 pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~ 924 (1610)
+..+..++... +.....++..|...+.+ ....+...++-++|+.+.
T Consensus 398 ----------------------------~~~i~~ll~~~-----~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 398 ----------------------------INVIRDLLSNN-----PELREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp ----------------------------HHHHHHHHHHS-----TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred ----------------------------HHHHHHHhhcC-----hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 33333333210 11112222222222222 233456667777777666
Q ss_pred HhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCcCChhhHHHHHHHHH
Q 000369 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 925 ~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~----~ll~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1610)
.... .. ....++..+.+.+.+....|+..+..++..+....+-. .+++.+......+..++++|..+..++.
T Consensus 445 ~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 445 LIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred cccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 5544 11 56677888888888888999999999999998877633 4455555555511227888988887765
No 33
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.67 E-value=0.00048 Score=82.41 Aligned_cols=495 Identities=14% Similarity=0.154 Sum_probs=273.7
Q ss_pred HHHHccCcCHHHHHHHHHHHHHHHHH-hh---------------hcchh-hhhhHHHHHHHHhccCc-------HHHHHH
Q 000369 330 LKKLITDVNIAVAVEAIQAIGNLARG-LR---------------THFSG-SSRFLLPVLLEKLKEKK-------PTVAES 385 (1610)
Q Consensus 330 L~~~l~D~n~~v~~~A~~~i~~La~~-L~---------------~~f~~-~~~~llp~Ll~klkdkk-------~~V~~a 385 (1610)
....++..|-.|...|......++.. .. ..|.. -+..++|.||..+-... =++.-+
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 33445688888888887777665542 11 12331 24568999998884422 256678
Q ss_pred HHHHHHHHHHh-cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHH
Q 000369 386 LTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1610)
Q Consensus 386 a~~al~ai~~~-~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~a 464 (1610)
+..||.-+... +..-+..++..+...+++.+|.-|..+.-.+...+..-....+.++.++.+|.+...++|+.--|.+.
T Consensus 348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 88898887765 11224557777778889999999999999999988877777788889999999999999999999999
Q ss_pred HHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCC
Q 000369 465 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544 (1610)
Q Consensus 465 A~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 544 (1610)
+..|++.|..++.+. ++|-. .|.+...+.+...
T Consensus 428 tAwc~g~iad~va~~-i~p~~-Hl~~~vsa~liGl--------------------------------------------- 460 (858)
T COG5215 428 TAWCFGAIADHVAMI-ISPCG-HLVLEVSASLIGL--------------------------------------------- 460 (858)
T ss_pred HHHHHHHHHHHHHHh-cCccc-cccHHHHHHHhhh---------------------------------------------
Confidence 999999999888642 11111 1111111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHH
Q 000369 545 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 624 (1610)
Q Consensus 545 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~ 624 (1610)
.|-|..........+.+...+ ++ +.++
T Consensus 461 ---------------------------------~D~p~~~~ncsw~~~nlv~h~----a~----------------a~~~ 487 (858)
T COG5215 461 ---------------------------------MDCPFRSINCSWRKENLVDHI----AK----------------AVRE 487 (858)
T ss_pred ---------------------------------hccchHHhhhHHHHHhHHHhh----hh----------------hhcc
Confidence 000000000000011111000 00 0000
Q ss_pred HHHHHHhccccchhHHHHHHHhhcC--CCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchhhHHH
Q 000369 625 LRQQVEAVQNLDQSVEILVRLVCML--PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHA 702 (1610)
Q Consensus 625 L~~~~~~~~~~~~~~~~lv~~l~~~--p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a 702 (1610)
..+.+ ...-..++..|.+. ...+|+| ....++++|..++..+++-.......+.....+|++..
T Consensus 488 ~~S~l------~~fY~ai~~~Lv~~t~~~~Ne~n--~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~------ 553 (858)
T COG5215 488 VESFL------AKFYLAILNALVKGTELALNESN--LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDEC------ 553 (858)
T ss_pred ccchh------HHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH------
Confidence 00000 00111222222211 1145666 45567888888888766544444455555555565542
Q ss_pred HHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHh-HHHHHHhcCCCCCcHHHHHHHHH
Q 000369 703 MKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAATRNATIK 781 (1610)
Q Consensus 703 ~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~-li~~l~~~gl~~~n~~VR~aA~~ 781 (1610)
+.... +++..=-..-.-.+++--+..|..+|..++...-++.+ ++..+... ++.+.+.+
T Consensus 554 ---isv~~----------q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~------ 613 (858)
T COG5215 554 ---ISVLG----------QILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTT------ 613 (858)
T ss_pred ---HHHhh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCch------
Confidence 11111 11110000001223555677888899999986545544 66666666 77775543
Q ss_pred HHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhh
Q 000369 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (1610)
Q Consensus 782 ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~ 861 (1610)
..+..|.-+| ++...|++.|++... ++.|-+.+.
T Consensus 614 ~~~dV~~aIs------------al~~sl~e~Fe~y~~----------------------------------~fiPyl~~a 647 (858)
T COG5215 614 AFGDVYTAIS------------ALSTSLEERFEQYAS----------------------------------KFIPYLTRA 647 (858)
T ss_pred hhhHHHHHHH------------HHHHHHHHHHHHHHh----------------------------------hhhHHHHHH
Confidence 2233332222 334455555555411 012223333
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccc--cHhHHHHHHHHHHHHHHHhChhHHHhhhhHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Ds--n~~v~~~al~~l~~la~~lg~~~~~~~~~ll 938 (1610)
+...+..+-..++--++.+...-+..+.+ | ..++..|.+.|+.+ +.++.-.-+.+.+.||.++|.+|.+|+..++
T Consensus 648 ln~~d~~v~~~avglvgdlantl~~df~~--y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNI--YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444445556666666666532233333 3 34567777777544 4567778899999999999999999999887
Q ss_pred HHHHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh-------cCcCChhhHHHHHHHHH
Q 000369 939 SDILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT-------DAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 939 p~ll~~l~-----------D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~-------~~~~~~~~R~~~l~~L~ 998 (1610)
.-+-..-. |=...++.....+.-.+..... ++.++|++...+. ++..+...-..+++.+.
T Consensus 726 ~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLig 805 (858)
T COG5215 726 MLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIG 805 (858)
T ss_pred HHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHH
Confidence 65544321 1123455555555555555554 7788887655443 22211111134566666
Q ss_pred HHhccCCC
Q 000369 999 KQLTGLSG 1006 (1610)
Q Consensus 999 ~~l~~~~~ 1006 (1610)
.+..-.++
T Consensus 806 Dla~mfpk 813 (858)
T COG5215 806 DLAGMFPK 813 (858)
T ss_pred HHHHhCCC
Confidence 65555555
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.67 E-value=1.8e-06 Score=117.17 Aligned_cols=242 Identities=19% Similarity=0.187 Sum_probs=168.5
Q ss_pred HHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhC--hhHH
Q 000369 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1610)
Q Consensus 718 v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (1610)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...++.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456677765 899999999999998764 32 2466777777 999999999999999877632221 1222
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHH
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1610)
..|.+-.|......-..+..+.. .-+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~----------------------------------~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA----------------------------------GDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc----------------------------------CCHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222111111100 00134667889999999999999
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHH
Q 000369 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1610)
Q Consensus 876 ~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~a 955 (1610)
.|..+- . ...|...+.|.+..|+..++..|+.+...-. ..++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987541 1 1235567899999999999998887744211 22677888999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000369 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1610)
Q Consensus 956 a~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1610)
|..+|..+.. ...+.+.+..+|.++ +|.+|..++..|... +. .+.+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9998876622 233456688888876 699999999888742 21 3345678899999999999999999
Q ss_pred HHHH
Q 000369 1036 IVEI 1039 (1610)
Q Consensus 1036 l~~l 1039 (1610)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.65 E-value=2.3e-05 Score=101.33 Aligned_cols=453 Identities=15% Similarity=0.171 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHH
Q 000369 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1610)
Q Consensus 384 ~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~ 463 (1610)
++....+-..... ..++..+.++...+.+++...|.-..-++..+....+. .+.-++..+.+-+.++++.+|.
T Consensus 25 ~~l~kli~~~~~G--~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-----~~~l~~n~l~kdl~~~n~~~~~ 97 (526)
T PF01602_consen 25 EALKKLIYLMMLG--YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-----LLILIINSLQKDLNSPNPYIRG 97 (526)
T ss_dssp HHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-----HHHHHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHcC--CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHhhcCCCHHHHH
Confidence 3444444433322 45667777787888888888888777777766554332 1244677788888888888888
Q ss_pred HHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccC
Q 000369 464 AAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543 (1610)
Q Consensus 464 aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~ 543 (1610)
.|..+++.+. ...+.+.
T Consensus 98 lAL~~l~~i~----~~~~~~~----------------------------------------------------------- 114 (526)
T PF01602_consen 98 LALRTLSNIR----TPEMAEP----------------------------------------------------------- 114 (526)
T ss_dssp HHHHHHHHH-----SHHHHHH-----------------------------------------------------------
T ss_pred HHHhhhhhhc----ccchhhH-----------------------------------------------------------
Confidence 8888776544 2111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHH
Q 000369 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAIS 623 (1610)
Q Consensus 544 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~ 623 (1610)
+.+.+.+.|.|.+|-.|..|+.
T Consensus 115 ----------------------------------------------------------l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 115 ----------------------------------------------------------LIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHSSSHHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHhcCCchHHHHHHHH
Confidence 1134556667777777888877
Q ss_pred HHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhhhcc--chhhH
Q 000369 624 SLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISERVAD--IKTRA 700 (1610)
Q Consensus 624 ~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~-~~~~~~~~il~~LveKlgd--~K~r~ 700 (1610)
.+.+++....+.-... ++..+.. -+.|+|..|...++.++..+ . +.+ ........++..|..-+++ +-.+-
T Consensus 137 ~l~~i~~~~p~~~~~~--~~~~l~~--lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDE--LIPKLKQ--LLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHCHCCHHGG--HHHHHHH--HTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHhccCHHHHHHH--HHHHHhh--hccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 7777776633321111 2222211 24677777877777777766 2 111 0001222222222222222 23344
Q ss_pred HHHHHHHHHHhhhCh----hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHH
Q 000369 701 HAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776 (1610)
Q Consensus 701 ~a~~~L~~l~e~~~~----~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR 776 (1610)
.+.++|..++..... ..+++.+...+ .+.++-|+-+++..+..+-.... -+..++..+.++ +.++++++|
T Consensus 211 ~il~~l~~~~~~~~~~~~~~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l~~~~~----~~~~~~~~L~~l-L~s~~~nvr 284 (526)
T PF01602_consen 211 KILRLLRRYAPMEPEDADKNRIIEPLLNLL-QSSSPSVVYEAIRLIIKLSPSPE----LLQKAINPLIKL-LSSSDPNVR 284 (526)
T ss_dssp HHHHHHTTSTSSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHH-HTSSSHHHH
T ss_pred HHHHHHHhcccCChhhhhHHHHHHHHHHHh-hccccHHHHHHHHHHHHhhcchH----HHHhhHHHHHHH-hhcccchhe
Confidence 444455444332111 22455555554 57788888888887764332111 245667777788 889999999
Q ss_pred HHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccch
Q 000369 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 856 (1610)
Q Consensus 777 ~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~ 856 (1610)
-.+...+..+.....+.+. ... -
T Consensus 285 ~~~L~~L~~l~~~~~~~v~------------~~~---------------------------------------------~ 307 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVF------------NQS---------------------------------------------L 307 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHG------------THH---------------------------------------------H
T ss_pred hhHHHHHHHhhcccchhhh------------hhh---------------------------------------------h
Confidence 9998887766543211110 000 0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-cHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
.+.-...+.+-.+|..+++-+..++...| ..+++..|...+.+. +..++..++..|+.++....+.. .
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~----~ 376 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANESN-------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA----E 376 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH----H
T ss_pred hhheecCCCChhHHHHHHHHHhhcccccc-------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH----H
Confidence 11111224555688899999999887532 577888888888655 55688999999999988765444 4
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhh
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l--~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1610)
.++..+++.+..+...+...+...+..++...+- ...+..+...+.+-. .+..+..++..+.++-..........++
T Consensus 377 ~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~~~~~~~~ 455 (526)
T PF01602_consen 377 WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDIS-SPEALAAAIWILGEYGELIENTESAPDI 455 (526)
T ss_dssp HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTTTTHHHHH
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccccccHHHH
Confidence 4567777777778788899999999998887652 446777888887643 5777777777777765444321124455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCh
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
+..+...+.+.+.+||...-.++..+....+.
T Consensus 456 ~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 456 LRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 56677788888999999999999999988874
No 36
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2.7e-07 Score=103.22 Aligned_cols=181 Identities=18% Similarity=0.257 Sum_probs=149.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
..+..|++++|....+++..+..+.. .++......+++++-++.+-+++.++.|...||.+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999998876 34555555579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCC----chhh
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP----DAAH 1012 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~----~~~~ 1012 (1610)
++..|+.+-++.|.+||+.|..+|.+|+.++.+..+++.|..++++. ++..|.........++..++-.+ ...+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999976 67777776666655555543211 1223
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1013 LLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
++..+-.-+.|+-+.+|++|...+....
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhHH
Confidence 3344556778999999999887665443
No 37
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.61 E-value=0.001 Score=79.75 Aligned_cols=467 Identities=13% Similarity=0.127 Sum_probs=248.7
Q ss_pred HHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcch--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHH
Q 000369 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1610)
Q Consensus 330 L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~--~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~ 406 (1610)
.....+ +....|+..|++|+-.=..-.+..|. -....++....+........++.++..|+..++.-........++
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445 77778888888888775555566665 235567888888888888899999999999987531122233333
Q ss_pred H-----HHHHhhcCChHHHHHHHHHHHHHHHh-CChhH--------------HH-HhhhhHHHHHHHhhcC-------CC
Q 000369 407 D-----VKTSVKNKVPLVRSLTLNWVTFCIET-SSKAA--------------VL-KVHKDYVPICMECLND-------GT 458 (1610)
Q Consensus 407 ~-----l~~~l~~Knp~vR~~~l~~L~~~l~~-~~~~~--------------l~-~~l~~l~p~l~~~l~D-------~~ 458 (1610)
. ...++++.|-+++.++.+|-....+. ..-.- +. ...+.++|.+.++|.. -+
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 2 23567899999999999988554432 21100 00 1234566666666522 12
Q ss_pred hHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhh
Q 000369 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (1610)
Q Consensus 459 ~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (1610)
=.+-.+|..||..|....|+..++|.+
T Consensus 342 Wn~smaA~sCLqlfaq~~gd~i~~pVl----------------------------------------------------- 368 (858)
T COG5215 342 WNPSMAASSCLQLFAQLKGDKIMRPVL----------------------------------------------------- 368 (858)
T ss_pred cchhhhHHHHHHHHHHHhhhHhHHHHH-----------------------------------------------------
Confidence 245566777777777777765443322
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHH
Q 000369 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (1610)
Q Consensus 539 ~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~R 618 (1610)
+-+.+.+.+.+|..|
T Consensus 369 -----------------------------------------------------------------~FvEqni~~~~w~nr 383 (858)
T COG5215 369 -----------------------------------------------------------------GFVEQNIRSESWANR 383 (858)
T ss_pred -----------------------------------------------------------------HHHHHhccCchhhhH
Confidence 112345667789999
Q ss_pred HHHHHHHHHHHHhccccc--h-hHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc
Q 000369 619 LEAISSLRQQVEAVQNLD--Q-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (1610)
Q Consensus 619 l~a~~~L~~~~~~~~~~~--~-~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd 695 (1610)
..|+-.+.+...+....- . ..+.+-.++. ...|+-..|....-..+..+++.. +..++++++
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~ttAwc~g~iad~v------------a~~i~p~~H 448 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKSTTAWCFGAIADHV------------AMIISPCGH 448 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhhHHHHHHHHHHHHH------------HHhcCcccc
Confidence 999999988876633210 0 0111111110 123444444443333333333321 112222222
Q ss_pred chhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCC-----CC---hHhHHHHHHh-c
Q 000369 696 IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LK---LKDLIDFCKD-T 766 (1610)
Q Consensus 696 ~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~-----l~---~k~li~~l~~-~ 766 (1610)
.- . +.+..+-++ .-+|++...|.-..-.++..|.... +- -..++.-+.+ .
T Consensus 449 l~--~-----------------~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t 507 (858)
T COG5215 449 LV--L-----------------EVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGT 507 (858)
T ss_pred cc--H-----------------HHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Confidence 10 0 000000110 1122222222222222222221100 00 0112221111 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCC--C--CCC--------------CCCCccc
Q 000369 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP--F--EGT--------------VVPKKTV 828 (1610)
Q Consensus 767 gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~--~--~~~--------------~~p~r~~ 828 (1610)
.+.....+.|.++-..+++|-.+..+.+.+.+.++-...++-|+.-..-.. . +.. .+-.|.
T Consensus 508 ~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~- 586 (858)
T COG5215 508 ELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT- 586 (858)
T ss_pred HhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 012223455667777777776666665555554444444433333211100 0 000 000010
Q ss_pred cCccCcCCCCCCCCCCCCc--cccccccchHHHhhcCCCC-hhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000369 829 RASESTSSVSSGGSDGLPR--EDISGKFTPTLVKSLESPD-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr--~dIs~~l~~~ll~~l~d~~-Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~ 905 (1610)
.+| .++.++|..-|+..++.++ --.-.+.+..+..+...-.+++... ...+++.|..-|+
T Consensus 587 ----------------~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y-~~~fiPyl~~aln 649 (858)
T COG5215 587 ----------------RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY-ASKFIPYLTRALN 649 (858)
T ss_pred ----------------cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhc
Confidence 011 2344556666677666653 2233444445555544211222111 2456777777777
Q ss_pred cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000369 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 906 Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~--~Vr~aa~~aL~~~~~~~~ 968 (1610)
-....|...|+..++.|+..||.+|.+|...++..+.+++..... .+.-+...+...++-++|
T Consensus 650 ~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 650 CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 778889999999999999999999999999999999999986543 477788888888888877
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.60 E-value=0.0018 Score=84.75 Aligned_cols=479 Identities=13% Similarity=0.072 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHH
Q 000369 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 461 (1610)
Q Consensus 382 V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~V 461 (1610)
.++++...+..+... .....++++++..+.+++..+|.-+..++.++.+..+... -..+..+.+-+.|++|-|
T Consensus 49 kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 49 KKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHHH
Confidence 345555555555432 5677889999999999999999999999888765443211 245788899999999999
Q ss_pred HHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccc
Q 000369 462 RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541 (1610)
Q Consensus 462 R~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~ 541 (1610)
|.-|..+|+. ++...+ ++.+-. -|+
T Consensus 122 RaLALRtLs~----Ir~~~i---~e~l~~----~lk-------------------------------------------- 146 (746)
T PTZ00429 122 RALAVRTMMC----IRVSSV---LEYTLE----PLR-------------------------------------------- 146 (746)
T ss_pred HHHHHHHHHc----CCcHHH---HHHHHH----HHH--------------------------------------------
Confidence 9999988754 232222 111111 112
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHH
Q 000369 542 LSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621 (1610)
Q Consensus 542 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a 621 (1610)
++|.|.+--.|..|
T Consensus 147 ------------------------------------------------------------------k~L~D~~pYVRKtA 160 (746)
T PTZ00429 147 ------------------------------------------------------------------RAVADPDPYVRKTA 160 (746)
T ss_pred ------------------------------------------------------------------HHhcCCCHHHHHHH
Confidence 22222222233333
Q ss_pred HHHHHHHHHhccccc---hhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--c
Q 000369 622 ISSLRQQVEAVQNLD---QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I 696 (1610)
Q Consensus 622 ~~~L~~~~~~~~~~~---~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~ 696 (1610)
+-.+.+++....+.. ...+.+..+ +.|+|..|...++.+|..+....++.. ......+..++..+.+ .
T Consensus 161 alai~Kly~~~pelv~~~~~~~~L~~L------L~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 161 AMGLGKLFHDDMQLFYQQDFKKDLVEL------LNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNE 233 (746)
T ss_pred HHHHHHHHhhCcccccccchHHHHHHH------hcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCCh
Confidence 333333332211100 001112221 245666666666666655554322210 1112222333333332 1
Q ss_pred hhhHHHHHHHHHHHh--hhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH----HHHHhcCCCC
Q 000369 697 KTRAHAMKCLTTFSE--AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI----DFCKDTGLQS 770 (1610)
Q Consensus 697 K~r~~a~~~L~~l~e--~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li----~~l~~~gl~~ 770 (1610)
-.+-...++|..+.- ......+++.+.+.+ .|.|+-|..+++..+..+....... -++.++ ..+.. |.+
T Consensus 234 W~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~~~~~~--~~~~~~~rl~~pLv~--L~s 308 (746)
T PTZ00429 234 WGQLYILELLAAQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLASRCSQE--LIERCTVRVNTALLT--LSR 308 (746)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCcCCHH--HHHHHHHHHHHHHHH--hhC
Confidence 122222233322100 001124566666664 7899999999998877654221100 012222 12222 556
Q ss_pred CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccc
Q 000369 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1610)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dI 850 (1610)
+++++|-.+...+..+-... +. .+...++..|-+... |. -+|..+-. . .........+
T Consensus 309 s~~eiqyvaLr~I~~i~~~~-P~----------lf~~~~~~Ff~~~~D--p~-yIK~~KLe--I------L~~Lane~Nv 366 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIF-PN----------LLRTNLDSFYVRYSD--PP-FVKLEKLR--L------LLKLVTPSVA 366 (746)
T ss_pred CCccHHHHHHHHHHHHHHHC-HH----------HHHHHHHhhhcccCC--cH-HHHHHHHH--H------HHHHcCcccH
Confidence 78899999988775554322 11 111122222222211 10 00000000 0 0000000011
Q ss_pred ccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhH
Q 000369 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1610)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~ 930 (1610)
..|..+|.+-..+.+-..|.+++..++.+... + +......+..|...+.+.. .++.+++.++..|.+.....
T Consensus 367 -~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k----~-~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~- 438 (746)
T PTZ00429 367 -PEILKELAEYASGVDMVFVVEVVRAIASLAIK----V-DSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPEL- 438 (746)
T ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh----C-hHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccH-
Confidence 12345566556677777888888888877642 1 2224567777777776543 34556677776665543221
Q ss_pred HHhhhhHHHHHHHHhC-C--CcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 931 EKSSKGVLSDILKCLG-D--NKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 931 ~~~~~~llp~ll~~l~-D--~k~~Vr~aa~~aL~~~~~~~~-l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
.++..++..+. + ..+..+.+..=.|..+.+.+. ...++..+...+.+. ++.+|..++....+++-..+.
T Consensus 439 -----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E--~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 439 -----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEH--EQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred -----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccC--CHHHHHHHHHHHHHHHhcCcH
Confidence 13445544331 1 223344444444444444332 122333333333333 578898888888887766542
Q ss_pred CCchhhhHHHHHH-hc-CCCCHHHHHHHHHHHHHH
Q 000369 1007 FPDAAHLLKPASI-AM-TDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1007 ~~~~~~ll~pl~~-~L-~D~~~dVR~aA~~~l~~l 1039 (1610)
+....+..++. |. .|.|+|||.-|..-...+
T Consensus 512 --~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 512 --GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred --HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 34556666664 44 467889999998554433
No 39
>PRK09687 putative lyase; Provisional
Probab=98.55 E-value=1e-05 Score=94.53 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=106.4
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
.+...+.|++|.+|..++..|..+ .. .+.+..|...|.|.+..|+..|+..|+.+ + .....
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------ND---EAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------CC---HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHH
Confidence 455567888999999988888533 11 56788888888999999999888888776 1 11336
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
.++.|+..+.|.+..||.+|..+|.. ++-...+|.|...|+++ + .|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~--~--~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG--T--VGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC--c--hHHHHHHHHHh----cCC----HhHHHH
Confidence 77888888999999999998888865 35567889999998865 2 46666655543 332 345555
Q ss_pred HHHhcC-CCCHHHHHHHHHHHH
Q 000369 1017 ASIAMT-DKSSDVRKAAEACIV 1037 (1610)
Q Consensus 1017 l~~~L~-D~~~dVR~aA~~~l~ 1037 (1610)
+...++ +.++.||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 667774 778999999888764
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=4.3e-05 Score=98.40 Aligned_cols=293 Identities=14% Similarity=0.163 Sum_probs=190.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccc---cchhHHHH---HHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCch
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~---~~~~~~~l---v~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~ 679 (1610)
+...+.+.-|.-|.+......+.-..... .....+.+ ++.+ ..|+|..|..........+....+ ..
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-----v~d~~~~vr~a~a~~~~~~~p~~~--k~ 432 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-----VLDNALHVRSALASVITGLSPILP--KE 432 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-----HhcccchHHHHHhccccccCccCC--cC
Confidence 44566677777777776666554433221 00011111 2222 256676666655544433322221 12
Q ss_pred hhHHHHHHHHHhhhcc--chhhHHHHHHH---HHHHhhhChhhHHHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCC
Q 000369 680 KCVVLCLLGISERVAD--IKTRAHAMKCL---TTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGV 751 (1610)
Q Consensus 680 ~~~~~il~~LveKlgd--~K~r~~a~~~L---~~l~e~~~~~~v~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~ 751 (1610)
+.+..++|..+.-+-| ..++....+.+ ...-+..|...+.+.+++.+. ...+|++|.+.+.++..+..++|.
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~ 512 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGV 512 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666555 34565555333 223334566666666666542 355899999999999999999996
Q ss_pred CCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCc
Q 000369 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1610)
Q Consensus 752 ~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~ 831 (1610)
..++-+ +-+.+... +.+.--+||++|...+..+-...|..- ..
T Consensus 513 ~~~~~~-~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w-~~---------------------------------- 555 (759)
T KOG0211|consen 513 EFFDEK-LAELLRTW-LPDHVYSIREAAARNLPALVETFGSEW-AR---------------------------------- 555 (759)
T ss_pred HHhhHH-HHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcch-hH----------------------------------
Confidence 544432 55666665 788888999999999988877777321 00
Q ss_pred cCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhH
Q 000369 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 911 (1610)
Q Consensus 832 ~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v 911 (1610)
..+.+.++....+.+|..|..-+..+..++.-.+..+.- .+|++.+.....|...+|
T Consensus 556 --------------------~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~---~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 556 --------------------LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC---EDLLPVFLDLVKDPVANV 612 (759)
T ss_pred --------------------HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH---HHHhHHHHHhccCCchhh
Confidence 013455667667779999999999998776543232222 568888888899999999
Q ss_pred HHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000369 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1610)
Q Consensus 912 ~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~ 967 (1610)
+-.+++.+..+.+.+-.+... +.+.|.+.....|+...||-.|..+...+....
T Consensus 613 R~nvak~L~~i~~~L~~~~~~--~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESVRD--EEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hhhHHHHHHHHHhhcchHHHH--HHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 999999999999888765332 355666666667999999999999998887553
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=98.36 E-value=0.002 Score=84.33 Aligned_cols=444 Identities=14% Similarity=0.123 Sum_probs=241.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
++.+.|.+.+-..|++|+.++-..+..+ .+...++.-..+.+.-.|..++....-.+...+ +.-...+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G------~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya----~~~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMG------RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA----RLQPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCC------CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----ccChHHHHH
Confidence 4566677777778889998877766432 234555555555566566666665544444432 222234556
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
.+..+.+-+.|+++.||.-|..+|..+...--++.+++.+..++.++ +|-+|+.++-.+.+++...+..-....++.-
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~--~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADP--DPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 78889999999999999998888766532211234445556666665 7999999999999887665532112234555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCh------HHHHHHh---hcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQ------ETIEKNL---KDIQGPALALILERIKLNGASQVSMGPTSKSSSKV 1087 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~~~G~------~~~~~~l---~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 1087 (1610)
+..+|.|+++.|..+|..+|..+...-+. ..+.+.+ .++++=.+-.|.+.+..+.|.. ..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-------~~---- 252 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-------KE---- 252 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-------cH----
Confidence 77789999999999999999988765431 2222222 3334444555666665543311 00
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhh---ccccccCCC-ChHH-Hh---hhh-hccccccCCChh
Q 000369 1088 PKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS---QALLNVKDS-NKED-RE---RMV-VRRFKFEDPRIE 1158 (1610)
Q Consensus 1088 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~k~~-R~---~~~-~~k~~~~~p~~e 1158 (1610)
.. ...-.+..+.=.++ .+++-- ..++...+. ..+. +. |+. ++ ..... ++-
T Consensus 253 -----e~------~~il~~l~~~Lq~~--------N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL-v~L~s-s~~ 311 (746)
T PTZ00429 253 -----SA------ETLLTRVLPRMSHQ--------NPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL-LTLSR-RDA 311 (746)
T ss_pred -----HH------HHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH-HHhhC-CCc
Confidence 00 00000000000000 000000 011111111 1111 00 100 00 00110 111
Q ss_pred hHHH--HH--HHHH----hhhhHHHHHhhc---cccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHH
Q 000369 1159 QIQE--LE--NDMM----KYFREDLHRRLL---STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTC 1227 (1610)
Q Consensus 1159 ~~e~--L~--~q~~----~~~~~~l~~~l~---s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v 1227 (1610)
++.. |+ ..+. ..|..+ +...| +....-+...++.|....... |++.|++=|..-..|.+..+
T Consensus 312 eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~------Nv~~IL~EL~eYa~d~D~ef 384 (746)
T PTZ00429 312 ETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVTPS------VAPEILKELAEYASGVDMVF 384 (746)
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcCcc------cHHHHHHHHHHHhhcCCHHH
Confidence 1211 11 0111 112222 11111 222235777777777665432 22233333333334777777
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCccccHHHHHhcc---cCCc
Q 000369 1228 LLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL---RSKN 1304 (1610)
Q Consensus 1228 ~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv~~~l~~gl---~sKn 1304 (1610)
..++...+..+-..+. .-+..++..|+.-+++..+.+.+ +-.+++.|..-||...++..|++.+ .-..
T Consensus 385 ~r~aIrAIg~lA~k~~--------~~a~~cV~~Ll~ll~~~~~~v~e-~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e 455 (746)
T PTZ00429 385 VVEVVRAIASLAIKVD--------SVAPDCANLLLQIVDRRPELLPQ-VVTAAKDIVRKYPELLMLDTLVTDYGADEVVE 455 (746)
T ss_pred HHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHCccHHHHHHHHHhhccccccc
Confidence 7777777776543332 24677888887777765554444 4456677777899877777777543 4567
Q ss_pred hhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcCh
Q 000369 1305 NRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1364 (1610)
Q Consensus 1305 ~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~ 1364 (1610)
+..|+.++=.||..-+... .-...|........+-++.||-+.|++.+-+|....+
T Consensus 456 ~~AKaaiiWILGEy~~~I~----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 456 EEAKVSLLWMLGEYCDFIE----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred HHHHHHHHHHHHhhHhhHh----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 8888886665665432211 1123454444555667889999999999999988764
No 42
>PRK09687 putative lyase; Provisional
Probab=98.15 E-value=2.3e-05 Score=91.56 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=124.6
Q ss_pred chhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000369 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1610)
Q Consensus 288 ~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~l 367 (1610)
+.+.+.+.+.+...|.+++..|..+-. .+++..+.+.+.|.|..++..|+.+++.|...-+. ....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 467788999999999999999976532 35667777778899999999999999997531110 2356
Q ss_pred HHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 368 lp~Ll~k-lkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|.|... +.|+-..||.++..+|..+..........+++.+...+.+++|.||..++..|..+ +. +..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC-------HHH
Confidence 7777766 68999999999999988774332223456777788888999999999988877532 11 456
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 447 ~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
++.|..+++|.++.||..|..+|+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999987
No 43
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.054 Score=68.12 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChH
Q 000369 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 381 ~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
-.++|..-.+.-|+.. .....++|++.....+||+.+|.-.--+|-+..+..+.-.+. =+..+.+.|.|+|+.
T Consensus 51 ~KleAmKRIia~iA~G--~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKG--KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 3456665555555543 668899999999999999999999999999998876543221 145788999999999
Q ss_pred HHHHHHHHHHHHH
Q 000369 461 VRDAAFSVLAAIA 473 (1610)
Q Consensus 461 VR~aA~~al~~l~ 473 (1610)
+|..|..+|..|-
T Consensus 124 iRasALRvlSsIR 136 (968)
T KOG1060|consen 124 IRASALRVLSSIR 136 (968)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886543
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.013 Score=73.40 Aligned_cols=383 Identities=16% Similarity=0.162 Sum_probs=211.0
Q ss_pred hhcCCcHHHH-HHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhhhhhh-hH--HHHHHH
Q 000369 60 TVADSNAPVQ-DKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD-VF--LDVMEK 135 (1610)
Q Consensus 60 ~v~DsN~~~q-~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~~~~~-~v--~~~L~~ 135 (1610)
.+-|||.... --|+.-+++.+.+ |.++..++.+|+..+..| ...+|..--=-|+.|.|- +++ .. +..+-+
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~-G~dvS~~Fp~VVKNVask----n~EVKkLVyvYLlrYAEe-qpdLALLSIntfQk 115 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAK-GKDVSLLFPAVVKNVASK----NIEVKKLVYVYLLRYAEE-QPDLALLSINTFQK 115 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhhcc----CHHHHHHHHHHHHHHhhc-CCCceeeeHHHHHh
Confidence 4456665543 3344444444433 334566666666666544 688888888889999984 444 22 456678
Q ss_pred HhhcCChhhHHHHHHHHHHHHHHhCCCCcChhh-HHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHH------
Q 000369 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR-ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL------ 208 (1610)
Q Consensus 136 ~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~-il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l------ 208 (1610)
+++.+||-+++.||.+|.. .++--+-| +|-.+.++..|..+-||.+|...+..+|.--.+ -+..|
T Consensus 116 ~L~DpN~LiRasALRvlSs------IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~ 187 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSS------IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKK 187 (968)
T ss_pred hhcCCcHHHHHHHHHHHHh------cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHH
Confidence 9999999999999999873 33333445 455677899999999999999999999954322 11111
Q ss_pred ----------------hhhChHHHHHHHHHHHHhcCCCC-------------CCcccchhhhhHhhhhhccccCCCCCCC
Q 000369 209 ----------------FEKMRDTMKKELEVELVNVSGTA-------------RPTRKIRAEQDKELGQELISEDVGPGPS 259 (1610)
Q Consensus 209 ----------------~~~lk~~q~kele~~f~~~~~~~-------------~p~r~~rs~~~~~~~~~a~~~~~~~~~~ 259 (1610)
|+..=|-.++-|.+-|-++..-- .=+||-|.+-.++.......+..| .+
T Consensus 188 LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~--~~ 265 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG--RS 265 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc--cc
Confidence 11222223333333333321000 014444433221100000000000 00
Q ss_pred CCCCCCCCCCCCCccCCCcccccCcCccchhhhh--------------hccC-ChHHHHHH-------------------
Q 000369 260 EESTADVPPEIDEYELVDPVDILTPLEKSGFWEG--------------VKAT-KWSERKDA------------------- 305 (1610)
Q Consensus 260 ~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~--------------l~s~-kW~~R~ea------------------- 305 (1610)
........+--.||-.-+.++++=+=.++-||.. +..+ +-+.-.++
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nI 345 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREVQYVVLQNI 345 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 0000000000011111111111100000011110 0000 00000111
Q ss_pred --------------------------------HHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHH
Q 000369 306 --------------------------------VAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1610)
Q Consensus 306 --------------------------------l~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La 353 (1610)
|+-|..|++ .++...|++.|+..|++....++..|+++||..|
T Consensus 346 a~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~-----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 346 ATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLAN-----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred HHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhh-----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 112222221 2457788888888999776679999999999999
Q ss_pred HHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh-cCChHHHHHHHHHHHHHHH
Q 000369 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 354 ~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~ 432 (1610)
...+. ....++.+|+..++.....|..++...+..++......-.+++-.+...++ -+.|.-|..++..+....+
T Consensus 421 ~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 421 SRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred HhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 87763 567899999999999999999888899999887611112235566666665 3557777666544444443
Q ss_pred hCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
. +.+..+.++..+.+-..|-..+||-.....-..+
T Consensus 497 ~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 497 I-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred h-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 3 2344577777888888888888887666554443
No 45
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.64 E-value=0.0045 Score=73.50 Aligned_cols=190 Identities=16% Similarity=0.101 Sum_probs=138.1
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~~~k---i~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~--~~f~~~ 363 (1610)
++.+.+.+++=+.|.++|..+..++.... .....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 56667788999999999999988763222 2235578899999999985555667889999999999987 445567
Q ss_pred hhhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChH------hhHHHHHHHh--h----------cCChHHHHHH
Q 000369 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV--K----------NKVPLVRSLT 423 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~--~V~~aa~~al~ai~~~~~~~l~------~vl~~l~~~l--~----------~Knp~vR~~~ 423 (1610)
...+.|.|..-+.|... .+|.++..||..+.-.++...+ ++++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 78888888888887643 4556665555554322233333 3344332221 1 1235788888
Q ss_pred HHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+.--..++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 7777777877777667777788999999999999999999999999999988774
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.54 E-value=0.19 Score=64.16 Aligned_cols=396 Identities=15% Similarity=0.159 Sum_probs=233.4
Q ss_pred HHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcc
Q 000369 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (1610)
Q Consensus 722 l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~l 801 (1610)
++..+ +..+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344666677778888888876654433 4567777877 49999999999998875554322111000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHH
Q 000369 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (1610)
Q Consensus 802 kp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll 881 (1610)
-+ .. ..+-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~~----~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------VD----NELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------cC----ccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00 013345667788999999999999999887
Q ss_pred HHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh--hHHHHHHHHhCCCcHHHHHHHHH
Q 000369 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLT 958 (1610)
Q Consensus 882 ~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~--~llp~ll~~l~D~k~~Vr~aa~~ 958 (1610)
... ..+ ...| .++...|...+..+|..++...+.++..++..-...+ .++. .+++.++..+.+....|+-.+.+
T Consensus 148 ~~~-~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 111 0000 2236777777776677888888888877765433333 4444 49999999999988999999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCcCCh-hhHHHHHHHHHHHhccCCC--CCch----hhhHHHHHHhcCCCC
Q 000369 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FPDA----AHLLKPASIAMTDKS 1025 (1610)
Q Consensus 959 aL~~~~~~~~-l-----~~ll~~l~~~L~~~~~~~-~~R~~~l~~L~~~l~~~~~--~~~~----~~ll~pl~~~L~D~~ 1025 (1610)
.+..++..-. . ..+++.|...+.+...+| -....+.+.+ .++.++.. ...+ ..++..+...++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999987432 1 235667777776544455 2222222222 12222211 1122 233334556678899
Q ss_pred HHHHHHHHHHHHHHHHHh-ChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000369 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (1610)
Q Consensus 1026 ~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1104 (1610)
...+..|.++++.+.... |...+ ..+-.+.-+..+..+.+..+..
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~------------------------------- 349 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG------------------------------- 349 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-------------------------------
Confidence 999999999999887543 22222 1222223233333322221110
Q ss_pred ccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhh-hhhcc-c--cccCCChhhHHHHHHHHHhhhhH---H-HH
Q 000369 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (1610)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~~~~p~~e~~e~L~~q~~~~~~~---~-l~ 1176 (1610)
+ .+-|.+ +..+. + ...++..+++..+...+...++. . ++
T Consensus 350 --------~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 350 --------S-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred --------c-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 0 000000 00000 0 00111223332333333333322 1 33
Q ss_pred HhhccccHH-HHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHh
Q 000369 1177 RRLLSTDFK-KQVDGLEMLQKALPS-IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1610)
Q Consensus 1177 ~~l~s~d~~-~r~~~l~~L~~~l~~-~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~ 1243 (1610)
-.+....|- -|++|+..|...+.. |.-..+.+..-++.|++.|-.|++..+...-+++++.|.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 444467765 499999999988765 3444455677799999999999999999999999998776554
No 47
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0078 Score=73.98 Aligned_cols=331 Identities=16% Similarity=0.161 Sum_probs=215.0
Q ss_pred cchHHHhhcC-CCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhH
Q 000369 854 FTPTLVKSLE-SPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1610)
Q Consensus 854 l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~ 930 (1610)
+.+.|...+. +.+-+.+.+|.-.|-.|..+.. .+.... ...++.|...+..++..|+.+|.-+++.++.- ++.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHH
Confidence 4466777775 6678889999999999987421 111111 34567788999999999999999998888753 5667
Q ss_pred HHhhh--hHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 931 EKSSK--GVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 931 ~~~~~--~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
..|+. ..+++++..+....+ .+...+.=+|..+.+... +..++|.|...+.+. ++++...++..+..+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 77765 478889988887775 455556678888887652 456788888888866 688888888777654
Q ss_pred hccCCCCCc--h-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCC
Q 000369 1001 LTGLSGFPD--A-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSM 1077 (1610)
Q Consensus 1001 l~~~~~~~~--~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~ 1077 (1610)
.+.....-. + ...+.-++.+|...+..|+..|-.+++.+. .|.+.....+ ++......+..++...
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv--tG~d~QTq~v--i~~~~L~~l~~ll~~s------- 333 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV--TGSDEQTQVV--INSGALPVLSNLLSSS------- 333 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee--eccHHHHHHH--HhcChHHHHHHHhccC-------
Confidence 444433211 1 123334888999999999988877777643 5665544443 2222222222221100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhhhhhccccccCCCh
Q 000369 1078 GPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRI 1157 (1610)
Q Consensus 1078 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~p~~ 1157 (1610)
+...- .|+ -=|.....+.
T Consensus 334 -------------------------------~~~~i------------------------kkE-------AcW~iSNItA 351 (514)
T KOG0166|consen 334 -------------------------------PKESI------------------------KKE-------ACWTISNITA 351 (514)
T ss_pred -------------------------------cchhH------------------------HHH-------HHHHHHHhhc
Confidence 00000 000 1143322222
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHH--HHHHHHHHHhccCCcHHHHHHHHhHH
Q 000369 1158 EQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL--DILLRWFVLQFCKSNTTCLLKVLEFL 1235 (1610)
Q Consensus 1158 e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~l--Dlllk~~~~r~~dtn~~v~~~~L~~l 1235 (1610)
-..++.+.-|..-+=+.|+..|-+.||+.|.+|.=.+.....+...+.+.+| .-+++=|+..|.-+++++++.+||.|
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence 2233444446666667999999999999999999999999888776655544 34677777788778999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCC
Q 000369 1236 PELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1610)
Q Consensus 1236 ~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd 1267 (1610)
..++..-..... +. . .-+..+++..|-
T Consensus 432 ~nil~~~e~~~~-~~---~-n~~~~~IEe~gg 458 (514)
T KOG0166|consen 432 ENILKVGEAEKN-RG---T-NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHhcc-cc---c-cHHHHHHHHccC
Confidence 988876554321 10 0 455666777765
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=1.1 Score=59.15 Aligned_cols=595 Identities=14% Similarity=0.098 Sum_probs=295.3
Q ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhc---CCC
Q 000369 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAG---CLN 400 (1610)
Q Consensus 325 ~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~-~V~~aa~~al~ai~~~~---~~~ 400 (1610)
.++..|-..+.|....|+..|++-++.++..+.. ..+..++..+++.|..-.. ..---+.-++.-+...+ ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 4555666777899999999999999999998874 3566777777776654442 12222222333333221 234
Q ss_pred hHhhHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH-HHhhcCCChHHHHHHHHHHHH
Q 000369 401 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 401 l~~vl~~l~~~l~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~~~l~D~~~~VR~aA~~al~~ 471 (1610)
+++|+|-|..++. ...-.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|+.-.+|.+|..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5678888877763 2235788887766666666666666766666666665 578999999999999998876
Q ss_pred HHHHhCChhH-HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCC
Q 000369 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (1610)
Q Consensus 472 l~~~~g~~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (1610)
..-..|+-+. .+++...|-..-.....+...
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~------------------------------------------------ 529 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLD------------------------------------------------ 529 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHH------------------------------------------------
Confidence 6655555321 122222221100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000369 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1610)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~ 630 (1610)
+ ..+-++.+.-...+|.+-+...+.|=+-+.|..|...|.+...
T Consensus 530 ---------------------------------l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 530 ---------------------------------L---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred ---------------------------------H---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 0011222222223344444455777788889999998887543
Q ss_pred hccccchhHHHHHHHhhc----CCCCCccHHHHHHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhhhccchhhHHHH
Q 000369 631 AVQNLDQSVEILVRLVCM----LPGWSEKNVQVQQQVIEVINYLAATATKFPKK---CVVLCLLGISERVADIKTRAHAM 703 (1610)
Q Consensus 631 ~~~~~~~~~~~lv~~l~~----~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~---~~~~il~~LveKlgd~K~r~~a~ 703 (1610)
-..+. .....+.+++.. .+.+...-+.+.......+..+......+... +...+++.+.++-.....++.-.
T Consensus 574 ~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMR 652 (1133)
T ss_pred hhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHH
Confidence 31110 001223333321 11111222222222222221111001111111 12224555555544443333444
Q ss_pred HHHHHHHhhhC-------hhhHHHHH---HhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhcCCCCCc
Q 000369 704 KCLTTFSEAVG-------PGFIFERL---YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA 772 (1610)
Q Consensus 704 ~~L~~l~e~~~-------~~~v~~~l---~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l-~~k~li~~l~~~gl~~~n 772 (1610)
.+...+.|.++ ++++.+.. +.....+.| .+|.++...+++++..|-...- ...++|......+-..++
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 44555555433 23443322 222223445 6788888888888887643211 111454443332144446
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccccc
Q 000369 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1610)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~ 852 (1610)
..+|..-+-.++.+-..+ +... .++-+ .+.
T Consensus 732 ~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c~~------------------------------------ 761 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSEL---IHRH-------LQEKL----CKL------------------------------------ 761 (1133)
T ss_pred HHHHHHHHHHHccCcHHh---hchH-------HHHHH----HHH------------------------------------
Confidence 777776665554443111 1110 01111 010
Q ss_pred ccchHHHhh-cCCCChhH-HHHHHHHHHHHHHHccccCCCCChhhHHHHHH----hccc----cccHhHHHHHHHHHHHH
Q 000369 853 KFTPTLVKS-LESPDWKV-RLESIEAVNKILEEANKRIQPAGTGELFGGLR----GRLY----DSNKNLVMATLITLGAV 922 (1610)
Q Consensus 853 ~l~~~ll~~-l~d~~Wk~-R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~----~~L~----Dsn~~v~~~al~~l~~l 922 (1610)
++.. .+|. |.+ |...+..+..++........+..+.+++..|. +... |-..-|+.+|++.+..+
T Consensus 762 -----~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 762 -----VLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred -----HhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence 0000 0112 333 66666666666553222223333444444444 4443 44566888999998888
Q ss_pred HHHhC-h-hHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh--c--CcCChhhHHHHHH
Q 000369 923 ASAMG-P-AVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT--D--AKLGAEGRKDLFD 995 (1610)
Q Consensus 923 a~~lg-~-~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~--~--~~~~~~~R~~~l~ 995 (1610)
...+. + -++.+ +..++..+++-..|+-...|+.|..|+..+..+-..-..+|......+ . ...++..-...+.
T Consensus 836 ~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f 915 (1133)
T KOG1943|consen 836 LDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLF 915 (1133)
T ss_pred hhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhh
Confidence 76553 3 34543 455666688888888888899999999999877222223343222221 0 0000110111111
Q ss_pred HHHHHhccCCCCCch-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhh
Q 000369 996 WLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1610)
Q Consensus 996 ~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~ 1069 (1610)
-+...+... +.. .+.+..+...+..--...++.|.+++..+++ ++..+.+-.+..+..-...+.+.+-.
T Consensus 916 ~L~~~Ll~~---~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~ 985 (1133)
T KOG1943|consen 916 PLNSSLLEL---PRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLN 985 (1133)
T ss_pred hHHHHHHhh---HHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHH
Confidence 111111111 122 2233334444444445567777777777776 44444444555555555555554433
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=1.1 Score=59.05 Aligned_cols=500 Identities=17% Similarity=0.155 Sum_probs=258.5
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-HhhHHHHHHHhh----cCChHHHHHHHHHHHHHHHhCCh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l-~~vl~~l~~~l~----~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
-+++.++-.|+..+.|+...||=++.+.+.-+.......+ ++++..+++.+. +..|- +++.+|+.+... +-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r-Gl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR-GL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-CC
Confidence 4677899999999999999999888888888877621111 234444444332 33343 666666654332 10
Q ss_pred hHHHHhhhhHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCC
Q 000369 437 AAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (1610)
Q Consensus 437 ~~l~~~l~~l~p~l~~~l~--------D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~ 508 (1610)
.+...+..++|.+.++|. -.-..||++|+-.+|+|.+......+.|++.+|-...
T Consensus 413 -Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L---------------- 475 (1133)
T KOG1943|consen 413 -LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL---------------- 475 (1133)
T ss_pred -cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH----------------
Confidence 112345788999998872 2335799999999999999887666666665443211
Q ss_pred CCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCC
Q 000369 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (1610)
Q Consensus 509 ~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (1610)
T Consensus 476 -------------------------------------------------------------------------------- 475 (1133)
T KOG1943|consen 476 -------------------------------------------------------------------------------- 475 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhcccc--chhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 000369 589 MSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1610)
Q Consensus 589 ~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~--~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~ 666 (1610)
++..++|..-.-|-+|.-.+++.+.-.++. +...-..+.+++. .-.+.....
T Consensus 476 -----------------L~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy~~ 529 (1133)
T KOG1943|consen 476 -----------------LIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCYLD 529 (1133)
T ss_pred -----------------HHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHHHH
Confidence 123344444444555555555444331111 1111112223221 123333333
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhh-hc--cchhhHHHHHHHHHHHhhh---ChhhHHHHHHhhhhcCCCHhHHHHHHH
Q 000369 667 INYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAV---GPGFIFERLYKIMKDHKNPKVLSEGIL 740 (1610)
Q Consensus 667 l~~l~~~~~~~~~~~~~~il~~LveK-lg--d~K~r~~a~~~L~~l~e~~---~~~~v~~~l~~~l~~~knpKv~~~~l~ 740 (1610)
+...+..++.+. ..++..++.+ +- |.++|..+..+|..+.... ..++++..+++.. ..+++-.|.++..
T Consensus 530 l~~~ia~~~~y~----~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~~l 604 (1133)
T KOG1943|consen 530 LCVSIAEFSGYR----EPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGVFL 604 (1133)
T ss_pred HhHHHHhhhhHH----HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhhHH
Confidence 433333333333 3344555543 54 4678999988888877642 3345677777763 6788888998888
Q ss_pred HHHHHHHHhC-CCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChh-HHHhhhcccHHHHHHHHHHHhcCCC
Q 000369 741 WMVSAVEDFG-VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPF 818 (1610)
Q Consensus 741 ~l~~~i~~fg-~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~l~~lkp~ll~~L~~ef~k~~~ 818 (1610)
..++++..+- .. +++..+... .-+-+..-+..+...|.+-|.+ +. .-...+.|+. +..
T Consensus 605 a~~ev~~~~~~l~-----~~~~~l~e~-----~i~~l~~ii~~~~~~~~~rg~~~lm------r~~~~~~Ie~----~s~ 664 (1133)
T KOG1943|consen 605 AAGEVIGALRKLE-----PVIKGLDEN-----RIAGLLSIIPPICDRYFYRGQGTLM------RQATLKFIEQ----LSL 664 (1133)
T ss_pred HHHHHHHHhhhhh-----hhhhhhHHH-----HhhhhhhhccHHHHHHhccchHHHH------HHHHHHHHHH----hhh
Confidence 8888875432 11 111100000 0000000111222222222321 10 0111122221 111
Q ss_pred CCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCC-hh-hH
Q 000369 819 EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG-EL 896 (1610)
Q Consensus 819 ~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~-~~-eL 896 (1610)
... | ..+...+.. .-.-+.+.+.+.| ++|.++..++.+++.. ....+. .. ++
T Consensus 665 s~~----~-----------------~~~~~v~e~-~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~~~l 718 (1133)
T KOG1943|consen 665 SKD----R-----------------LFQDFVIEN-WQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEEAPL 718 (1133)
T ss_pred ccc----h-----------------hHHHHHHHH-HHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhhhHH
Confidence 000 0 000011110 0001112235667 8999999999999864 333332 12 24
Q ss_pred HHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcC-----
Q 000369 897 FGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCL-GDNKKHMRECTLTVLDAWLAAVH----- 968 (1610)
Q Consensus 897 ~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l-~D~k~~Vr~aa~~aL~~~~~~~~----- 968 (1610)
+.....++ +.++..++.--.-+++.+...+ +.-+ -+.+...++..+ .|--+.-|+....+++.+....+
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~ 795 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFS 795 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444 4456666554333333332211 1111 222333344433 23356677777777777776654
Q ss_pred --chhhHHHHHHHHhc------CcCChhhHHHHHHHHHHHhccCCCCCc-hhhhHHHHHH----hcCCCCHHHHHHHHHH
Q 000369 969 --LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASI----AMTDKSSDVRKAAEAC 1035 (1610)
Q Consensus 969 --l~~ll~~l~~~L~~------~~~~~~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~----~L~D~~~dVR~aA~~~ 1035 (1610)
..++.+.|..+|.+ +.+...+|..++..+...+.....++- ..+.+.+++. ---|+-...|.-|..|
T Consensus 796 ~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~ 875 (1133)
T KOG1943|consen 796 ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASA 875 (1133)
T ss_pred ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777763 223345788888888777666554221 1233444333 3356666668888777
Q ss_pred HHHHHHH
Q 000369 1036 IVEILRA 1042 (1610)
Q Consensus 1036 l~~l~~~ 1042 (1610)
+..+..+
T Consensus 876 ~~qi~~~ 882 (1133)
T KOG1943|consen 876 LNQIVVH 882 (1133)
T ss_pred Hhceeec
Confidence 7766655
No 50
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.35 E-value=0.014 Score=76.26 Aligned_cols=304 Identities=16% Similarity=0.219 Sum_probs=193.2
Q ss_pred HHHHHHhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCch---
Q 000369 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK--- 679 (1610)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~--- 679 (1610)
.-+..++.+ +.-..|++|++-|...-.-.+.. ...+-++.++.. -|.|+-.+|+..++++|..+...-.++..
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333444444 45667899999887664443222 234555556543 47999999999999999998765444332
Q ss_pred -hhHHHHHHHHHhhhccc---hhhHHHHHHHHHHHhhhChhhHHHHHHh--hhhcCCCHhHHHHHHHHHHHHHHHhCCCC
Q 000369 680 -KCVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1610)
Q Consensus 680 -~~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~v~~~l~~--~l~~~knpKv~~~~l~~l~~~i~~fg~~~ 753 (1610)
-..+.++|.|-.-+.|+ .+|-.-..+|-.+++...-=..+.+.+. ++.+..|.. ...+.-+-..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~ 571 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTE 571 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccc----------cccccccchH
Confidence 23456777777666662 3565555666666542110000111111 111111111 0000000000
Q ss_pred C-Ch-HhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCc
Q 000369 754 L-KL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1610)
Q Consensus 754 l-~~-k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~ 831 (1610)
+ .+ ..+-+.+..+ +.++.+.||.+-.+-++.|+.+.|.. + +
T Consensus 572 ~~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k------------s- 614 (1431)
T KOG1240|consen 572 LQALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K------------S- 614 (1431)
T ss_pred HHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c------------c-
Confidence 0 01 1223445567 88888999999999999999888742 0 0
Q ss_pred cCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhh-HHHHHHhccccccHh
Q 000369 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKN 910 (1610)
Q Consensus 832 ~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~e-L~~~L~~~L~Dsn~~ 910 (1610)
+ |+ |.+-++.-|.|++|.-|..-.+.+-.+. -.+...-..| |++.|.+-|.|...-
T Consensus 615 ----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 615 ----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred ----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchh
Confidence 1 11 4566778899999999999888876553 2333332234 567778899999999
Q ss_pred HHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHHHh
Q 000369 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTALT 981 (1610)
Q Consensus 911 v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~----l~~ll~~l~~~L~ 981 (1610)
|+..||.++..|++. |--=++++..++..++-.|...+..||.++..-|-++.++.+ .-.+.|.|-+.|.
T Consensus 672 Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 672 VIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999874 322246788888888888999999999999999999998876 2336677776665
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.26 E-value=0.0012 Score=63.91 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000369 301 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1610)
Q Consensus 301 ~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk 379 (1610)
.|+.+|..|.+++ .-++-....+.+|++.+.+.+.|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998865 222223334578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000369 380 PTVAESLTQTLQAMH 394 (1610)
Q Consensus 380 ~~V~~aa~~al~ai~ 394 (1610)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999887 5555544
No 52
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.059 Score=67.43 Aligned_cols=334 Identities=13% Similarity=0.223 Sum_probs=187.0
Q ss_pred HHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH-
Q 000369 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP- 974 (1610)
Q Consensus 896 L~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~- 974 (1610)
++.++++-|..+|--++-.+++.+..|=. ...++.++|.+..+|.....-||..|.-|+-+++.+. +.++|
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pD 171 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPD 171 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCC
Confidence 34566677788888888888877655422 1467789999999999999999999999999999873 22222
Q ss_pred ---HHHHHHhcCcCChhhH------------HHHHHHHHHHhccCCCCCchhhhHH-HHHHhcCCCCHHHHHHHHHHHHH
Q 000369 975 ---YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVE 1038 (1610)
Q Consensus 975 ---~l~~~L~~~~~~~~~R------------~~~l~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1610)
.+...|.... .|.-+ ..++.||...+...+...+..+++. -++.-...+++.-|..=..|+-.
T Consensus 172 apeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 172 APELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred hHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 2333333211 22223 3456666666666654333333222 22222222555544444444433
Q ss_pred HHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCc
Q 000369 1039 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESI 1118 (1610)
Q Consensus 1039 l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1118 (1610)
+...-......+....|- + .+ ..|...
T Consensus 251 lL~stssaV~fEaa~tlv-------------------~--------------------------lS--------~~p~al 277 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLV-------------------T--------------------------LS--------NDPTAL 277 (948)
T ss_pred HHhcCCchhhhhhcceEE-------------------E--------------------------cc--------CCHHHH
Confidence 222211111111100000 0 00 000000
Q ss_pred cccchhhhhhccccc----cC-CCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhh---HHHHHhhccccHHHHHHH
Q 000369 1119 MSVQDFAVQSQALLN----VK-DSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDG 1190 (1610)
Q Consensus 1119 ~~~~~~~~~~~~~~~----~~-~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~---~~l~~~l~s~d~~~r~~~ 1190 (1610)
+ ...+..+. .. +|-| +.+ .|-+.+|++-...++. -+++..|-+.|+.-|-++
T Consensus 278 --k----~Aa~~~i~l~~kesdnnvk-----lIv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Kt 337 (948)
T KOG1058|consen 278 --K----AAASTYIDLLVKESDNNVK-----LIV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKT 337 (948)
T ss_pred --H----HHHHHHHHHHHhccCcchh-----hhh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 0 00000000 00 1111 110 0111122221222211 277788889999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChH
Q 000369 1191 LEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270 (1610)
Q Consensus 1191 l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~ 1270 (1610)
++...+...+. |..-+..++..++.+||..=.-+.-.|=+.|+..+......|.++ |+..+|.|++=+||..+
T Consensus 338 ldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 338 LDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNE 410 (948)
T ss_pred HHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCH
Confidence 99988876653 333355677778888876655556666666676666666678876 88899999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCcc--ccHHHHHhcc-cCCchhhHHHHHHHHHHH
Q 000369 1271 KVREKMRELTKQIVNFYSAT--KTLPYILEGL-RSKNNRTRIECVDLVGFL 1318 (1610)
Q Consensus 1271 ~vr~~v~~il~~~~~~~~~~--kv~~~l~~gl-~sKn~r~r~e~l~~l~~l 1318 (1610)
..-..|-..++.+.+.||.- .+..-+++++ +-+.+|.....+=-+|..
T Consensus 411 ~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 411 AAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 88888888888877777754 3555556655 445555554444444443
No 53
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.3 Score=62.23 Aligned_cols=145 Identities=16% Similarity=0.245 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCc
Q 000369 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949 (1610)
Q Consensus 870 R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k 949 (1610)
..+-++.+-.++... +..++..-|+..-.+-+...+..++++|+.++...... ..++..++..+.-+.
T Consensus 332 K~eKleil~~la~~~-------nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~ 399 (734)
T KOG1061|consen 332 KLEKLEILIELANDA-------NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKV 399 (734)
T ss_pred HHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcc
Confidence 344555555555432 14667777777777888888899999999988765433 567777788887777
Q ss_pred HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHH
Q 000369 950 KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (1610)
Q Consensus 950 ~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1027 (1610)
..|.+.+...+..+.+.++ ++.+++.+...+.+=. +|+.|......+.++...++ +...++.-++....|...+
T Consensus 400 ~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~-epeak~amiWilg~y~~~i~---~a~elL~~f~en~~dE~~~ 475 (734)
T KOG1061|consen 400 DYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ-EPEAKAALIWILGEYAERIE---NALELLESFLENFKDETAE 475 (734)
T ss_pred cceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC-ChHHHHHHHHHHhhhhhccC---cHHHHHHHHHhhcccchHH
Confidence 7788888888888888876 4556665555444321 46666655544444433332 3344555555566665555
Q ss_pred HHH
Q 000369 1028 VRK 1030 (1610)
Q Consensus 1028 VR~ 1030 (1610)
|+-
T Consensus 476 Vql 478 (734)
T KOG1061|consen 476 VQL 478 (734)
T ss_pred HHH
Confidence 543
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.22 E-value=0.14 Score=65.45 Aligned_cols=302 Identities=17% Similarity=0.232 Sum_probs=169.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC--CCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCC-c-hh
Q 000369 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA--KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK-D-PV 204 (1610)
Q Consensus 129 v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~--~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~-~-~~ 204 (1610)
..+.|..|+.|.+|+|+.-++..|..+++.-+. ..+.-..+++.+..++.|.|..|.+.|.+++..+.++-.. + .+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 445666777888888888888777766654322 2223356777888888888888888888888777544322 1 11
Q ss_pred hHHHhhhChHHHHH--------HHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCC
Q 000369 205 KTILFEKMRDTMKK--------ELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 276 (1610)
Q Consensus 205 ~~~l~~~lk~~q~k--------ele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~ 276 (1610)
...+...|+....+ -++ .+.++.. .+... .+.+
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~e-l~v~i~~--------~S~~~------------------------------~~~~ 198 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYE-LLVEIAS--------HSPEA------------------------------AEAV 198 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHH-HHHHHHh--------cCHHH------------------------------HHHH
Confidence 11112333332222 111 1111100 00000 0000
Q ss_pred CcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHccCc--CHHHHHHHHHHH
Q 000369 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAI 349 (1610)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~k----i~~-~~~~~l~~~L~~~l~D~--n~~v~~~A~~~i 349 (1610)
....++ +.+...+.+.|--.|..+++-|..++..+. +.. +-+..|+..+...-.|. +...+-..++..
T Consensus 199 ~~sgll-----~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 199 VNSGLL-----DLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HhccHH-----HHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 000111 123333455566667778888877764321 111 22334444444443454 454555566777
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------hHhhHHHHHHHhhcCChH
Q 000369 350 GNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPL 418 (1610)
Q Consensus 350 ~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~-----------l~~vl~~l~~~l~~Knp~ 418 (1610)
+.++..-...+-.....++..+++.+....+..+..|.+|+..+... ..+ +..++..+.....+....
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 77777533333333455666667767778888888888888877643 111 223344455555566678
Q ss_pred HHHHHHHHHHHHHHhCCh---hHHHHhh--------hhHHH-HHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 419 VRSLTLNWVTFCIETSSK---AAVLKVH--------KDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 419 vR~~~l~~L~~~l~~~~~---~~l~~~l--------~~l~p-~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
+|..+++.++.++..... ..+.... ..-.. .++..+.-+-|++|-+|...+.+++.+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 999999999999765432 1121111 11112 778889999999999999999988855
No 55
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.089 Score=65.00 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=128.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~---~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~ 364 (1610)
....++.+.+=..+..+...++++.+..+-.+ .--..+++.|...+. +.+..+..+|.-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556677788889999999999875433332 111246677777776 88899999999999999998765544333
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------hHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhC-C
Q 000369 365 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETS-S 435 (1610)
Q Consensus 365 -~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~------vl~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~-~ 435 (1610)
...+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ .....+...|..+.... +
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 36788899999999999999999999999876 344443 34556666665554 33334444444444443 3
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 436 ~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
.+.+ ..+..++|+|..++.+.|++|.. .+.|++....
T Consensus 229 ~P~~-~~v~~iLp~L~~ll~~~D~~Vl~---Da~WAlsyLs 265 (514)
T KOG0166|consen 229 SPPF-DVVAPILPALLRLLHSTDEEVLT---DACWALSYLT 265 (514)
T ss_pred CCcH-HHHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHh
Confidence 3332 45688999999999999999974 4455555443
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.19 E-value=0.0018 Score=62.65 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCC
Q 000369 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~ 948 (1610)
.|+.|+-.|.++...-...+... +.+|++.+...+.|.+..|+-.||+++-.+++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876543343333 57899999999999999999999999999999999999899999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 000369 949 KKHMRECTLTVLDA 962 (1610)
Q Consensus 949 k~~Vr~aa~~aL~~ 962 (1610)
.+.||.+| +.|+.
T Consensus 81 d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 81 DENVRSAA-ELLDR 93 (97)
T ss_pred chhHHHHH-HHHHH
Confidence 99999998 44443
No 57
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.097 Score=64.78 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=144.7
Q ss_pred hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHH
Q 000369 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1610)
Q Consensus 716 ~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1610)
+.++..+... .....++||..+++.|-.+-+ |++ +. +..-....++ +.|.+..||.+|++++...-........
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3444444444 478899999999998877665 432 22 3455667788 9999999999999998766544421111
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC-------CChh
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-------PDWK 868 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d-------~~Wk 868 (1610)
..-+ -.+..++.|.++-..-. .-.=.+|..... .+ ....++.++++.+.-| .-|+
T Consensus 271 ~e~~-----e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESE-----EEKLKDAAFSSVCRAVR-DRSLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhh-----hhhhHHHHHHHHHHHHh-cCceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 1111 12344555554421000 000011111100 00 0011122233322111 1233
Q ss_pred HHHHHHHHHHHHHH-HccccCC---CC---C-------hhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 869 VRLESIEAVNKILE-EANKRIQ---PA---G-------TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 869 ~R~eale~l~~ll~-~a~~~i~---~~---~-------~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
.-.+.-..+..--+ ..+++.. |+ + -+-.+.+|..-|.|---.|+..|...+..|+.. .++ |+
T Consensus 333 ~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~---FA 408 (823)
T KOG2259|consen 333 TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPG---FA 408 (823)
T ss_pred hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCC---cH
Confidence 32222222211000 0001110 00 0 011345666667777777888887777777654 233 34
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-hhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhh
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~-~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1610)
..-+--+...++|.-..||--|+.+|..+..+..+. .-++.+.+.|.+. ++++|.++.+.|.. .+..+...+.-.
T Consensus 409 ~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence 445555667778888888888888888888887653 4677888888876 57788887777753 233322233334
Q ss_pred HHHHHHhc
Q 000369 1014 LKPASIAM 1021 (1610)
Q Consensus 1014 l~pl~~~L 1021 (1610)
+..++++|
T Consensus 485 v~~lL~~L 492 (823)
T KOG2259|consen 485 VAHLLKNL 492 (823)
T ss_pred HHHHHHHh
Confidence 44466665
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.98 E-value=0.35 Score=60.40 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=137.2
Q ss_pred HHHhh-cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
.++.. ....++-.|..+++.+..+++ +......+.+++..+...+ .......+..+++++..+++++=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 34433 344569999999998888874 4333333567777777666 556677788999999999998744445778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCcCChhhHHHHHH
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~--------~-----------l~~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1610)
..++..+++.++| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667888888888887541 1 233455666666543 3346778888
Q ss_pred HHHHHhccCCCC---CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
.|..++.+.|.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888888888762 455555555889998888999999999999888766 56777776554
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.92 E-value=0.059 Score=67.25 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=148.9
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHc-cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000369 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~~ki~~~-~~~~l~~~L~~~l-~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll 372 (1610)
...++-.|..+++.+..+++ |...+ .+.+++..+...+ ..........++..+.-+++||=-+-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45668999999998888875 34333 4677777777777 45666678888999999999986555789999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-----CCC-----------hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC
Q 000369 373 EKLKEKKPTVAESLTQTLQAMHKA-G-----CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1610)
Q Consensus 373 ~klkdkk~~V~~aa~~al~ai~~~-~-----~~~-----------l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1610)
+.+.+ +.+...+..++..++.- . +.+ +..++|.+.++.+..+...|...+..|..++.+.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777888877754 0 011 34567778888887777799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccH
Q 000369 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1610)
Q Consensus 436 ~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~ 490 (1610)
+..+...++.++|.+.++|+=++++||.++.+++..+..-- ...+.++++.|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 99888999999999999999999999999999998877665 3345555555443
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.76 E-value=0.027 Score=61.51 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHh
Q 000369 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1610)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l 945 (1610)
++.+|..++..+..++... |+......+.+..+|.|.+..|+.+|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 333455677888999999999999999999998764 34444456678889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------cCChhhHHHHHHHHHHHhcc
Q 000369 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (1610)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~~~~~~~---l~~ll~~l~~~L~~~-------~~~~~~R~~~l~~L~~~l~~ 1003 (1610)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+.|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 344566666666531 22456678888888877764
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.11 Score=65.85 Aligned_cols=365 Identities=20% Similarity=0.217 Sum_probs=207.1
Q ss_pred hhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000369 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1610)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~ 89 (1610)
+|---|+-.-+.|++=-.|..+---+.+++.-..+ --+-.-+.+.++..+.|+|+.|-..++.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 44445666667777777777777777776643211 0001224566677888999888888888887776654211
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC-C
Q 000369 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-K 162 (1610)
Q Consensus 90 ~~~~v~~~lveK~l~~k~~~k~~a----~~~ll~~~e~~--~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~-~ 162 (1610)
....+.+.++.+.+.+....-+.+ .+++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-. .
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111122223333332222333333 33333332111 1246777778888888888888888888777665433 0
Q ss_pred CcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhh
Q 000369 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1610)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~ 242 (1610)
..-.+.+-+.+..++.... .+ ---.+++++- ++...+.....++...|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~-------qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EI-------QYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-hh-------hHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0011222223333333111 10 0001111110 011111111111111110
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000369 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1610)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~ 322 (1610)
.+.||. | .+.+-++-+..+++. .+
T Consensus 324 -------------------------------kynDPi-----------Y---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDPI-----------Y---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCch-----------h---------hHHHHHHHHHHHhhH-----hH
Confidence 111211 1 112334545555432 23
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~ 402 (1610)
..++...|+..-.+..+..++.|++|||.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5568888888888999999999999999999887754 56899999999989889999999999999988223346
Q ss_pred hhHHHHHHHhhc-CChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 403 ~vl~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
.++..+...+.+ .+|..|......+....+..+.+ ..++..+.+...|...+| ..+.+.+.+++|+.+.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a------~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENA------LELLESFLENFKDETAEV---QLELLTAAIKLFLKKP 492 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH------HHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcCC
Confidence 677777666653 56888866554555544443322 566777888888888877 5777778888877543
No 62
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.71 E-value=0.069 Score=70.09 Aligned_cols=274 Identities=15% Similarity=0.082 Sum_probs=177.2
Q ss_pred hhHHHHHHHHHHHhhhChhhHHHHHHhhh---hcCCCHhHHHHHHHHHHHHHHHh---CCC--CCChHhHHHHHHhcCCC
Q 000369 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVS--HLKLKDLIDFCKDTGLQ 769 (1610)
Q Consensus 698 ~r~~a~~~L~~l~e~~~~~~v~~~l~~~l---~~~knpKv~~~~l~~l~~~i~~f---g~~--~l~~k~li~~l~~~gl~ 769 (1610)
.|-.|.+.|..++...+-+..+++++++. +....++||..++..|++++... ... .+-...+++.+..+ +.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-LN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-hc
Confidence 46678888888888777776677777653 46788999999999999998632 221 12245577777777 77
Q ss_pred C-CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCC---CCCCCCCccccCccCcCCCCCCCCCCC
Q 000369 770 S-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDGL 845 (1610)
Q Consensus 770 ~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~---~~~~~p~r~~r~~~~~~~~~~~~~d~~ 845 (1610)
| ++..||-+-..++..|.... ..|++ .-++.... ..|-..+.+ .+ . .+ .
T Consensus 518 d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~--~~------~--~~--~ 570 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP--EQ------N--YN--T 570 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc--cc------c--cc--h
Confidence 7 67789999999888876432 12221 11111000 000000000 00 0 00 0
Q ss_pred CccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHH
Q 000369 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1610)
Q Consensus 846 pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~ 925 (1610)
...++...+..-+...+.|..--+|..-++.|..++.=. .+.+.++ =|+.-|..-|+|....++..=...|..++--
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksND--~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSND--VILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhccccc--chHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 011111111122334567888888888888888877532 3344443 2566667778999988988777777777666
Q ss_pred hChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 926 lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
.|.. ..-+.++|-+.+.|.|..+.|...|..|+..+++.--+ -+++..+.+.|-++ |.-+|.+++.++...
T Consensus 648 VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 648 VGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAI 723 (1431)
T ss_pred Eeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHH
Confidence 6654 12345788899999999999999999999999986433 44555667777777 567899999999988
Q ss_pred hccCCC
Q 000369 1001 LTGLSG 1006 (1610)
Q Consensus 1001 l~~~~~ 1006 (1610)
...+..
T Consensus 724 ~~~ls~ 729 (1431)
T KOG1240|consen 724 ARQLSA 729 (1431)
T ss_pred Hhhhhh
Confidence 777654
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.64 E-value=0.0039 Score=53.74 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
|.+|..++..|.++.+. ....+..+++.++|.+..+|.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999884443 34456678899999999999999999999999999754
No 64
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.55 E-value=0.42 Score=57.96 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=110.7
Q ss_pred CChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
..|..|..++..+..+- ..+.+..|...+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888888776542 1556778888889998899999988887776543 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCC
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (1610)
+.|....||.++..++..+ +..+-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999988877554 5566667788888765 4555555555543 112344556677888999
Q ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1025 SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
+..+|..+...+..+.............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~ 315 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLAL 315 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHh
Confidence 9999999998887776555444444333
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.52 E-value=0.017 Score=54.87 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=68.9
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 368 lp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|.|++.+ .++.+.||..+..++. . ..-..+++.+...+++++|.+|..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----E--LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----C--CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----H--cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889988 8999999987766666 2 45568899999999999999999999998854 1 1567
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHH
Q 000369 447 VPICMECLNDG-TPEVRDAAFSVLA 470 (1610)
Q Consensus 447 ~p~l~~~l~D~-~~~VR~aA~~al~ 470 (1610)
++.+.+.+.|. +..||.+|..+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 88898988664 5677999999885
No 66
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.47 E-value=0.074 Score=58.12 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-hHHHHHHHhhcCC
Q 000369 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (1610)
Q Consensus 338 n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-vl~~l~~~l~~Kn 416 (1610)
|+.|+..++.+++.|+.. |...++..+|.+...+.|+.+.||..+..++..++......+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 567888999999999875 45667778999999999999999999999999988764445554 4478888999999
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcC
Q 000369 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D 456 (1610)
+.+|..+..++..+.....+..+. ..+|.++..+++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~----~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIY----NNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHhC
Confidence 999999999999988874444443 334444444444
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.26 Score=61.78 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=100.0
Q ss_pred chhhhhhc--cCChHHHHHHHHHHHHHhc-----CCCCCCCChHHHHHHHHHHccCc-CHHHHHHHHHHHHH--HHHHhh
Q 000369 288 SGFWEGVK--ATKWSERKDAVAELTKLAS-----TKRIAPGDFTEVCRTLKKLITDV-NIAVAVEAIQAIGN--LARGLR 357 (1610)
Q Consensus 288 ~~f~~~l~--s~kW~~R~eal~~L~~l~~-----~~ki~~~~~~~l~~~L~~~l~D~-n~~v~~~A~~~i~~--La~~L~ 357 (1610)
+.||+.+. +.||- |-.|.+|-. .||+- ..|+.-|...|... --.+..++++|+-. |..|+.
T Consensus 221 P~ffkllttSsNNWm-----LIKiiKLF~aLtplEPRLg----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWV-----LIKLLKLFAALTPLEPRLG----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred HHHHHHHhccCCCee-----hHHHHHHHhhccccCchhh----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 47888774 58895 344444321 23322 23444455555422 22344555554432 222333
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh---hHHHHHHHhhcCChHHHHHHHHHHHHHHHhC
Q 000369 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD---VVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1610)
Q Consensus 358 ~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~---vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (1610)
.+ ...+..++.-|=.-+-|+-++..=-+.-|+..+.. +++.. .-+.|+.+|.+|.+.+|..++..|...+..
T Consensus 292 d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k---tHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk- 366 (877)
T KOG1059|consen 292 DH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK---THPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK- 366 (877)
T ss_pred Cc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh---hCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-
Confidence 33 34567777777777788888888777777777776 34443 446678899999999999999998877653
Q ss_pred ChhHHHHhhhhHHHHHHHhhcCCCh-HHHHHHHHHH
Q 000369 435 SKAAVLKVHKDYVPICMECLNDGTP-EVRDAAFSVL 469 (1610)
Q Consensus 435 ~~~~l~~~l~~l~p~l~~~l~D~~~-~VR~aA~~al 469 (1610)
+.+.+|+..|+..+.++++ .-|+.-..-+
T Consensus 367 ------kNl~eIVk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 367 ------KNLMEIVKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred ------hhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 2347788888888888877 5555443333
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=4.9 Score=51.74 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhcchhhhhh-HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHH
Q 000369 348 AIGNLARGLRTHFSGSSRF-LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1610)
Q Consensus 348 ~i~~La~~L~~~f~~~~~~-llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~ 426 (1610)
=+|+||-.|-=+=..-+.. +...|-+-+...++.|+-.|..++..|+.- .-..++.|++..-++|.+|-+|.-++..
T Consensus 88 RiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~Lc 165 (866)
T KOG1062|consen 88 RIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAALC 165 (866)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHHH
Confidence 4567776654332233333 444444557788888888887788777643 3456889999999999999999999999
Q ss_pred HHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 427 L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
..+++.+.+. ....+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 166 a~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 166 AVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 9999887653 246788999999999999998888887777776644
No 69
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.41 E-value=0.022 Score=61.61 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHH-----------HHH-hccCcHHHHHHHHHHHHHHHHhc---------
Q 000369 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LEK-LKEKKPTVAESLTQTLQAMHKAG--------- 397 (1610)
Q Consensus 340 ~v~~~A~~~i~~La~~L-~~~f~~~~~~llp~L-----------l~k-lkdkk~~V~~aa~~al~ai~~~~--------- 397 (1610)
+|+..|+.|++.+++.. ++.|..|+..++|.- +.. ++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 36889999999999994 566889999998865 333 47999999999999999998751
Q ss_pred ----C---CC----hHhhHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHH-HhhhhHHHHHHHhhcCCChH
Q 000369 398 ----C---LN----LVDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 398 ----~---~~----l~~vl~----~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~~~l~D~~~~ 460 (1610)
. ++ +..++- .+..+++ ++++.+-.+.++.+..+++.++-..+. +++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 222232 2455565 678889999999999999988765554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000369 461 VRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 461 VR~aA~~al~~l~~~~g 477 (1610)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876644
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.18 Score=62.58 Aligned_cols=308 Identities=15% Similarity=0.148 Sum_probs=178.8
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC--hh-
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA- 437 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~- 437 (1610)
.-.+.+...+...+.+.-..||.+|.+++.++... ..+.. +.......|.+.+-.||.++++.+...-..++ ..
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33455555688888999999999999999998763 44444 44566778889999999999888776555552 11
Q ss_pred --HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000369 438 --AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1610)
Q Consensus 438 --~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~ 515 (1610)
.-.++.....-.+...+.|..-.||-.|.++||.|..+-.+ -+...||..-+..++. .+
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee----~i~QTLdKKlms~lRR--kr------------- 332 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE----IIQQTLDKKLMSRLRR--KR------------- 332 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH----HHHHHHHHHHhhhhhh--hh-------------
Confidence 11245667777888999999999999999999988766432 1234455322222211 00
Q ss_pred ccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHH
Q 000369 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1610)
Q Consensus 516 ~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~ 595 (1610)
. .+++|..--+ + +.=++|.. .. .|. +.|+.+
T Consensus 333 ~--------------------------ahkrpk~l~s---~-GewSsGk~------~~----adv---------psee~d 363 (823)
T KOG2259|consen 333 T--------------------------AHKRPKALYS---S-GEWSSGKE------WN----ADV---------PSEEDD 363 (823)
T ss_pred h--------------------------cccchHHHHh---c-CCcccCcc------cc----ccC---------chhhcc
Confidence 0 0011100000 0 00000000 00 000 112222
Q ss_pred HHHhccCc----HHHHHHhhcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHH
Q 000369 596 SRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1610)
Q Consensus 596 ~~~~~ll~----~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~-~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l 670 (1610)
+....+++ ..++.+|.|.-...|.+|+..+.....+... .....+.|+.+ |+|----|..+++..|..+
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHHHH
Confidence 22223333 4567788888899999999999988766322 12234555555 5777778999999999988
Q ss_pred HHHcCCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHH--HhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHH
Q 000369 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1610)
Q Consensus 671 ~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l--~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~ 748 (1610)
+.+ ..+.+..+..++..|.+..- .+|+...+.|... .........+..+++.+ .|=|+-+-+.+..+..+-+.
T Consensus 438 s~~-l~i~eeql~~il~~L~D~s~--dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 438 SVH-LAIREEQLRQILESLEDRSV--DVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHH-heecHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHhcc
Confidence 876 45555555556555555433 3566665555431 11112223344444433 35566666666665555444
Q ss_pred hC
Q 000369 749 FG 750 (1610)
Q Consensus 749 fg 750 (1610)
++
T Consensus 513 H~ 514 (823)
T KOG2259|consen 513 HR 514 (823)
T ss_pred Ch
Confidence 44
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=7.6 Score=53.40 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=82.3
Q ss_pred cHhHHHHHHHHHHHHHH--------HhChhHHHhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHh-cCc---hh
Q 000369 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAA-VHL---DK 971 (1610)
Q Consensus 908 n~~v~~~al~~l~~la~--------~lg~~~~~~~~~llp~ll~~l----~D~k~~Vr~aa~~aL~~~~~~-~~l---~~ 971 (1610)
|.......+-++|.+++ .-|+.+.+....+.-.++.+| ++.+..+|..|..+|..++-. .++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44556677889999987 345666655555555655554 577899999999999888744 332 34
Q ss_pred hHHHHHHHHhcCcCChhh-HHHHHHHHHHHhccCC-----------C-----------------CCc-----hhhh-HHH
Q 000369 972 MVPYVTTALTDAKLGAEG-RKDLFDWLSKQLTGLS-----------G-----------------FPD-----AAHL-LKP 1016 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~-R~~~l~~L~~~l~~~~-----------~-----------------~~~-----~~~l-l~p 1016 (1610)
+...+...|.+.+ ++.. |..++.-+..++.... . ... +.++ +..
T Consensus 1265 v~nly~~ila~~n-~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ 1343 (1692)
T KOG1020|consen 1265 VLNLYDEILADDN-SDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDN 1343 (1692)
T ss_pred HHHHHHHHHhhhc-ccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 5566667776554 3333 7777666655543210 0 001 2222 233
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
++.++-|++..||..|.+.++.+..
T Consensus 1344 ILe~cl~~d~~~r~~aikvl~liL~ 1368 (1692)
T KOG1020|consen 1344 ILESCLDRDLQVRLVAIKVLKLILN 1368 (1692)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHH
Confidence 6667777888888888877765543
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.37 Score=61.37 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=87.3
Q ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-hHh
Q 000369 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVD 403 (1610)
Q Consensus 325 ~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~-l~~ 403 (1610)
-|.+.|++=++..|-.||-.|+.+++.|+.. -.++.+.|.+-+.++..++.||..|.-|+.-++.. ... .+-
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~ 179 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEH 179 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHH
Confidence 4556777777788888999999999988652 35778999999999999999999888888888876 222 233
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHh
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~ 453 (1610)
+++.....|.+|+.-|-..++.++..+.+..+.. + .+.+.+++.+++.
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~-l-~~fr~l~~~lV~i 227 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA-L-SYFRDLVPSLVKI 227 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH-H-HHHHHHHHHHHHH
Confidence 4455566788999999999999988887765432 2 2233444444443
No 73
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.099 Score=63.04 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=133.9
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ll 938 (1610)
....+..|+.|....--+.++... +.+.. ..+++++..+..+..|++..++..||.+++.++..+......|...++
T Consensus 224 ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 224 SSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 345667899999888888877742 33332 236899999999999999999999999999999998888999999988
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCcCChhhHHHHHHHHHHHhccCCC--CC
Q 000369 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1610)
Q Consensus 939 p~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l~~ll~~-------l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~ 1008 (1610)
-.++..|-| .+..|.=.+..||.-+.+......+-++ +.+.+.+. +++.|..++-.+..+..-.+. ..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 888776654 5678888888999888887764444332 22333333 577888766554432222221 12
Q ss_pred chhh----hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhh
Q 000369 1009 DAAH----LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 1009 ~~~~----ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1610)
.+.+ -..|++-.|+|+++-|-.|.+..+....-.++-+....++.
T Consensus 380 ~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 380 FFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 2332 33467778899999998888887776666666565555554
No 74
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.32 E-value=0.0055 Score=45.97 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
++|.+.++++|++++||.+|..+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.30 E-value=0.031 Score=56.09 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=84.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----hH-hhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH
Q 000369 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~----l~-~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1610)
.+++.+++.+.+....++..+..++..+..+.... .. .+++.+...+.+.++.++..++..|.++....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999887641000 12 57788888999999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 441 ~~l-~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
... ..+++.+.+++++.+.++|+.|..+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 348999999999999999999999998764
No 76
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.27 E-value=1.5 Score=50.80 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-
Q 000369 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL- 375 (1610)
Q Consensus 299 W~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl- 375 (1610)
|.-=..++..+..|++...+..+....+++.+.+-+. .--...+....+.+..|...-+.....+...++..+++.+
T Consensus 54 ~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~ 133 (262)
T PF14500_consen 54 HACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID 133 (262)
T ss_pred HhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc
Confidence 3333455666777665555555555556665554333 1222356666777777776655555556667888888877
Q ss_pred ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh---------cCC---hHHHHHHHHHHHHHHHhCChhHHHHhh
Q 000369 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---------NKV---PLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~---------~Kn---p~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1610)
+||-|.----+-..+..+... ..+....+++.+.+. .+| .-.|.+.-.-|..|+..++. +.
T Consensus 134 gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa 206 (262)
T PF14500_consen 134 GEKDPRNLLLSFKLLKVILQE--FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FA 206 (262)
T ss_pred cCCCHHHHHHHHHHHHHHHHh--cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hH
Confidence 777776666666666666665 455666776665441 222 23666777777788775422 23
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHH
Q 000369 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1610)
Q Consensus 444 ~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~ 493 (1610)
+..+|.+..-|..+.+.|+.-+.++|......+|.+.+.+++..+=..-|
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999998888888887754433
No 77
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.09 E-value=0.29 Score=58.27 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=114.4
Q ss_pred HHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccc---cchh----HHHHHHHhhcCCCCCccHHHHHHHH
Q 000369 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQS----VEILVRLVCMLPGWSEKNVQVQQQV 663 (1610)
Q Consensus 591 ~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~---~~~~----~~~lv~~l~~~p~~~DsN~~V~~~~ 663 (1610)
.++++.++ .+.+..+.++.-+.|.+|++.+...+...-. .... .+.+.+.+.+ | .+ .-+..+
T Consensus 38 ~~~~e~~L-----~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk--g--~~--~E~~lA 106 (309)
T PF05004_consen 38 QEDLEDKL-----KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK--G--KS--EEQALA 106 (309)
T ss_pred hhHHHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc--C--CH--HHHHHH
Confidence 34555444 4678899999999999999999999866211 1111 2333444322 1 11 334556
Q ss_pred HHHHHHHHHHcC--CCchhhHHHHHHHHHhhhccc----hhhHHHHHHHHHHHhhhC--hhhHH--HHHHhhhh------
Q 000369 664 IEVINYLAATAT--KFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVG--PGFIF--ERLYKIMK------ 727 (1610)
Q Consensus 664 l~~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~----K~r~~a~~~L~~l~e~~~--~~~v~--~~l~~~l~------ 727 (1610)
+.++..++-..+ .-....+..+.|.|..-+.|. +.|..+..+|-.++-..+ ++-+. -..+..++
T Consensus 107 ~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~ 186 (309)
T PF05004_consen 107 ARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILK 186 (309)
T ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcC
Confidence 666666665543 334556666777776666663 566676666665543322 22111 02222111
Q ss_pred c---------CCCHhHHHHHHHHHHHHHHHhCCCCCC--hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhCh
Q 000369 728 D---------HKNPKVLSEGILWMVSAVEDFGVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 728 ~---------~knpKv~~~~l~~l~~~i~~fg~~~l~--~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
. ..++.+..++|..-+-++.......+. +...++.+..+ |++++.+||-+|-+.+.-||.....
T Consensus 187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l-L~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 187 SDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSEL-LDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 1 124568888887776666544332121 34466777888 9999999999999999999987764
No 78
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.02 E-value=0.011 Score=59.33 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=82.4
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+.+++.+.+.+|..|..++..+..+.... +....... .++++.|.+.|.|.|..++..++.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45777888899999999999999987531 11111111 26778888888999999999999999999876443333333
Q ss_pred h-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000369 935 K-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 935 ~-~llp~ll~~l~D~k~~Vr~aa~~aL~~~~ 964 (1610)
. .+++.+++.+.+.+..+++.+..++..+.
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 48999999999999999999998887764
No 79
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.95 E-value=0.044 Score=52.01 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 938 LSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 938 lp~ll~~l-~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
+|.+++.+ .|..+.||..+..+|. ..+-..++|.+...++++ ++.+|..++..|..+ .....+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i--------~~~~~~~~ 66 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDE--DPMVRRAAARALGRI--------GDPEAIPA 66 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC--------HHHHTHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CCHHHHHH
Confidence 57888888 8999999999888887 445567899999999876 799999999988743 12445566
Q ss_pred HHHhcCC-CCHHHHHHHHHHHH
Q 000369 1017 ASIAMTD-KSSDVRKAAEACIV 1037 (1610)
Q Consensus 1017 l~~~L~D-~~~dVR~aA~~~l~ 1037 (1610)
+...+.| .+..||.+|..+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 7777754 56678999988874
No 80
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.11 Score=61.72 Aligned_cols=408 Identities=17% Similarity=0.150 Sum_probs=190.8
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCC-----------chhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000369 19 RLLHKNWKVRNEANIDLAALCDSITDPK-----------DNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1610)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~~~~-----------~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~ 87 (1610)
+..|-.-|.|..|.--+..+.+.++... .|+.. -..++.-.++|.|+...--+|+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 4556677899999988888776543211 11110 012333468999999999999999988876543 2
Q ss_pred hhhhHHHHHHHHhhhcC-C-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC
Q 000369 88 GRYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1610)
Q Consensus 88 ~~~~~~v~~~lveK~l~-~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~ 165 (1610)
-....+.-+.-..- |. . -..++ .+-.|++...|.| -.|-++..|+.+|..++.+--...+.
T Consensus 82 ls~a~~~~~~~ftp-f~v~~a~si~-~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 82 LSVAEDTSDHAFTP-FSVMIACSIR-ELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHHHhccCCcCCCc-hHHHHHHHHH-HHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 11100000000000 00 0 00011 1233444444433 34566777888887777653222222
Q ss_pred ---hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-------CCCcc
Q 000369 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-------ARPTR 235 (1610)
Q Consensus 166 ---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~-------~~p~r 235 (1610)
+-.+.-++.++..|.|++||-.+..++..|. |-. +-++++|. . +..-... ..|..
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~-------~~~pei~~-~----~~~~~s~~n~~~~h~s~~~ 209 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STH-------APLPEVQL-L----LQQPCSSSNSATPHLSPPD 209 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcC-------CCCHHHHH-H----hcCCCccccccCCCCCChH
Confidence 2346667889999999999999887766553 211 11222221 1 1110000 01110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhh------hhcc--CChHHHHHHHH
Q 000369 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDAVA 307 (1610)
Q Consensus 236 ~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~------~l~s--~kW~~R~eal~ 307 (1610)
. -+. .. .|+...+-..+.+...-.+--++.++--..-+++.+-+. .+++ ..---|.|+++
T Consensus 210 ~---~~~--l~-------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~q 277 (728)
T KOG4535|consen 210 W---WKK--LP-------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQ 277 (728)
T ss_pred H---HHh--cC-------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHH
Confidence 0 000 00 000000000000001111222222222112222222111 1111 22346888888
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchh--hhhhHHHHHHHHh----------
Q 000369 308 ELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKL---------- 375 (1610)
Q Consensus 308 ~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~--~~~~llp~Ll~kl---------- 375 (1610)
-|..++..-.+....+.++.+.+.+.+.|.-..+-..+..|+..+..++.....| .-..+.-..+..+
T Consensus 278 vl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~ 357 (728)
T KOG4535|consen 278 VLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL 357 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence 8876653222222345677788888888999999999999999999988744322 1111111111111
Q ss_pred ccC-cHHHHHHHHHHHHHHHHhcCCChHh----hHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHH
Q 000369 376 KEK-KPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1610)
Q Consensus 376 kdk-k~~V~~aa~~al~ai~~~~~~~l~~----vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1610)
-|+ -.....++..++-.|.......+++ ..+....++. |||--+|.+++..+.-.+-+..-.............
T Consensus 358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~ 437 (728)
T KOG4535|consen 358 YDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA 437 (728)
T ss_pred hhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence 111 1112222222222222111111221 2223334443 777777777766665444433222111223444555
Q ss_pred HHHhhcCCChHHHHHHHHHHHHH
Q 000369 450 CMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 450 l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
+...+.|+.-.+|..++=+++.|
T Consensus 438 il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhh
Confidence 56666776666666665554433
No 81
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=7.9 Score=49.09 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=94.3
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHccCcCHHHHHHHHHHHHHHHH-HhhhcchhhhhhHH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLL 368 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~-~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~-~L~~~f~~~~~~ll 368 (1610)
.+.+++.|+.|+.=+.-.+.-|.+.. .++ ..+...+++=+...|...+..|++||+.+.. .++..|.+-+.
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~--- 152 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP--- 152 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---
Confidence 34467888888776655555555421 233 2344566666667788889999999999876 34544543332
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~--~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
-|| .-++....|++.+.-|+..+++.+ ........+.|..-|.+..-.|-..+..++..++.++++.
T Consensus 153 -KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 153 -KLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred -HHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 222 247888999999999999999872 1334566777888888777777777888888777776654
No 82
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.85 E-value=0.047 Score=58.71 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=97.9
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHH---HHHhChh
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~l---a~~lg~~ 929 (1610)
+.+-|++++.+.+.--|.-|.+.+.+++.. +..+|.|- ..+|+..|+.-|+-.|..|...+|++++.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346788999888888888899999998886 55667776 488999999999999999999999999999 6678999
Q ss_pred HHHhhhhHHHHHH--HH----hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000369 930 VEKSSKGVLSDIL--KC----LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1610)
Q Consensus 930 ~~~~~~~llp~ll--~~----l~-----D~k~~Vr~aa~~aL~~~~~~~~l~~ll 973 (1610)
+.||.++++|.+- .. ++ ..++.+++-..++|..+-++.|.+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 9999999999876 21 22 255778899999999888888866543
No 83
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.33 Score=58.76 Aligned_cols=210 Identities=16% Similarity=0.139 Sum_probs=138.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~-~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
|....++.+|+.|...+-.+.++...+.+.. +.+++++-.+.....|++..++..||.+++.++.++-.+.-.|...++
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 3344678999999988888888776555543 667889999999999999999999999999999997777777777777
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhh----HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhH---H
Q 000369 369 PVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA---V 439 (1610)
Q Consensus 369 p~Ll~klkd-kk~~V~~aa~~al~ai~~~-~~~~l~~v----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~---l 439 (1610)
-.++-.+-| -+..|.=.+..||.-+... ....+... .-.+-..+++-++++|..+...++.+....+... +
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 777777755 3456665566666666544 11222222 2223455678899999999888887776554322 2
Q ss_pred HH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHH
Q 000369 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1610)
Q Consensus 440 ~~-~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~ 500 (1610)
.. ..+.+.| +.-.++|++|.|-.|.+..+-...--++-+....+++..-+..+..+.+++
T Consensus 382 te~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 382 TEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred HHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 11 1122222 333579999999777766665555444434455555533233333444443
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=2.8 Score=53.08 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=151.4
Q ss_pred HHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHH
Q 000369 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVT 977 (1610)
Q Consensus 900 L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~ 977 (1610)
++.-++.+|.-=+..|+..+..+.+ + ..++.+.+.++..|+.+++.||.-|...+-.++-..+ +...+|-+.
T Consensus 114 ~rkdl~S~n~ye~giAL~GLS~fvT---p---dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~ 187 (877)
T KOG1059|consen 114 LRKDLNSSNVYEVGLALSGLSCIVT---P---DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV 187 (877)
T ss_pred HHHHhccCccchhhheecccccccC---c---hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH
Confidence 3444555554444555555554433 1 3567888999999999999999999999988887776 677889999
Q ss_pred HHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
+-|.++ +|.+...+.+-+.++..+.|. .+.++.+-+++.|.+. |+ .|-.+++.||. +.-+
T Consensus 188 EkLeDp--Dp~V~SAAV~VICELArKnPk--nyL~LAP~ffkllttSsNNW--------mLIKiiKLF~a------Ltpl 249 (877)
T KOG1059|consen 188 EKLEDP--DPSVVSAAVSVICELARKNPQ--NYLQLAPLFYKLLVTSSNNW--------VLIKLLKLFAA------LTPL 249 (877)
T ss_pred HhccCC--CchHHHHHHHHHHHHHhhCCc--ccccccHHHHHHHhccCCCe--------ehHHHHHHHhh------cccc
Confidence 999987 688888888888887655543 4566666688877443 44 23334444442 2222
Q ss_pred ChhHHHHHH----HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1056 QGPALALIL----ERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1056 ~~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
.|--.+++. +.++..-.. +-+
T Consensus 250 EPRLgKKLieplt~li~sT~Am-------------------------------------------------------SLl 274 (877)
T KOG1059|consen 250 EPRLGKKLIEPITELMESTVAM-------------------------------------------------------SLL 274 (877)
T ss_pred CchhhhhhhhHHHHHHHhhHHH-------------------------------------------------------HHH
Confidence 222222221 111110000 000
Q ss_pred cccCCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 000369 1132 LNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDI 1211 (1610)
Q Consensus 1132 ~~~~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDl 1211 (1610)
+--.+ -+...+...--+++-...+. |+ .-|...+-++|-.-+.=|+-.|.+.+..++..+.++-|+
T Consensus 275 YECvN---------TVVa~s~s~g~~d~~asiqL----Cv-qKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdl 340 (877)
T KOG1059|consen 275 YECVN---------TVVAVSMSSGMSDHSASIQL----CV-QKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDL 340 (877)
T ss_pred HHHHH---------HheeehhccCCCCcHHHHHH----HH-HHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHH
Confidence 00000 00000000000011111111 22 255566667888888999999999999999999999999
Q ss_pred HHHHHHHhccCCcHHHHHHHHhHHHHHHHH
Q 000369 1212 LLRWFVLQFCKSNTTCLLKVLEFLPELFDT 1241 (1610)
Q Consensus 1212 llk~~~~r~~dtn~~v~~~~L~~l~~l~~~ 1241 (1610)
|+|.+ .|+.+++=.++||.|-.++..
T Consensus 341 IlrcL----~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 341 ILRCL----DDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHh----ccCCchhHHHHHHHHHHHhhh
Confidence 99988 899999999999998876643
No 85
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.66 E-value=5.1 Score=48.45 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=104.3
Q ss_pred HhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhH-HHhhhcccHHHHHHHHH-HHhcCCCCCCCCCCccccCccCc
Q 000369 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPALLSALDA-EYEKNPFEGTVVPKKTVRASEST 834 (1610)
Q Consensus 757 k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l-~~~l~~lkp~ll~~L~~-ef~k~~~~~~~~p~r~~r~~~~~ 834 (1610)
...+.|+..+ -+|.|.-||.+|+..++.+-.+-|... ..|..+--..++..|.+ .|.+-... ..
T Consensus 390 T~~~~Fl~GC-~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Ka-------aw------ 455 (728)
T KOG4535|consen 390 TLCITFLLGC-NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKA-------AW------ 455 (728)
T ss_pred hhhHHHHhcc-cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHH-------HH------
Confidence 3456677764 677788999999998887766666432 23333322333333332 33221000 00
Q ss_pred CCCCCCC----CCCCCccc-----cccccchHHHh---hcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000369 835 SSVSSGG----SDGLPRED-----ISGKFTPTLVK---SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1610)
Q Consensus 835 ~~~~~~~----~d~~pr~d-----Is~~l~~~ll~---~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~ 902 (1610)
+.|.. -+.+|.+| +++.+...++. .....+.|+|..+++.|+.++.--.+-+.+. +++++..=+.
T Consensus 456 --tlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~-~~e~~~~~~~ 532 (728)
T KOG4535|consen 456 --SLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT-FAEIIEESIQ 532 (728)
T ss_pred --HhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-HHHHHHHHHH
Confidence 00000 01222221 12211111111 1234478999999888887775322233333 5666654333
Q ss_pred c-----cccccHhHHHHHHHHHHHHHHHhChhH--HHhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHH
Q 000369 903 R-----LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLA 965 (1610)
Q Consensus 903 ~-----L~Dsn~~v~~~al~~l~~la~~lg~~~--~~~~~~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~ 965 (1610)
. ....|.+|+..+|.+++.+.+.-.-+| .+.+..+++.++..+.|-+. -||.-|..+|.....
T Consensus 533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2 356789999999999999997533323 25677888888887766443 366666556544333
No 86
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.35 E-value=7.2 Score=47.97 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=184.1
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHhhc----CCCCCcc-HHHHHHHHHHHHHHHHHHc---
Q 000369 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (1610)
Q Consensus 609 ~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~------~~~~~lv~~l~~----~p~~~Ds-N~~V~~~~l~~l~~l~~~~--- 674 (1610)
+|.+.+=-.|.+||..|...++..+... ...+.+++++.. .+.=+++ +..+..+++.++..+.-..
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3556666789999999999887743221 123445555432 1222343 6678899999998887531
Q ss_pred CCCchhhHHHHHHHHHhhhccch-hhHHHHHHHHHHHh-hhChhhH----HHHHHhhh---hc-CCCHhHHHHHHHHHHH
Q 000369 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (1610)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K-~r~~a~~~L~~l~e-~~~~~~v----~~~l~~~l---~~-~knpKv~~~~l~~l~~ 744 (1610)
..++......++...++.+.++. .|..+...|.-+.+ .+++.++ ...++..+ .+ -++--+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 23555555567888888887764 35666666666554 5555432 33333322 22 3455678899999999
Q ss_pred HHHHhCCCC-CChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCC
Q 000369 745 AVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1610)
Q Consensus 745 ~i~~fg~~~-l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~ 823 (1610)
++..+...= -+...-++.+-.. +-++...+|..|+.+...+...+|+.- ...+.+.+.++....++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccccc---
Confidence 998876421 1223344455554 678899999999999988888888531 11122222222211000
Q ss_pred CCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC-CChhHHHHHHHH---HHHHHHHccccCCC-CChhhHHH
Q 000369 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEA---VNKILEEANKRIQP-AGTGELFG 898 (1610)
Q Consensus 824 p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d-~~Wk~R~eale~---l~~ll~~a~~~i~~-~~~~eL~~ 898 (1610)
-+...+.+.+...+.+ ++.+ .+++- +-.++. . ..+.. ..+.+.+.
T Consensus 228 -------------------------~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~-~-~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 228 -------------------------KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG-S-SRLDSWEHLNEWLK 277 (372)
T ss_pred -------------------------cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC-C-chhhccHhHhHHHH
Confidence 0001112223333334 2222 12222 222231 1 22222 23578888
Q ss_pred HHHhccccccHhHHHHHHHHHHHHHHHhChh---HHHhhhhHHHHHHHHhCCC-----cHHHHHHHHHHHHHHH
Q 000369 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDN-----KKHMRECTLTVLDAWL 964 (1610)
Q Consensus 899 ~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~---~~~~~~~llp~ll~~l~D~-----k~~Vr~aa~~aL~~~~ 964 (1610)
.....+++++..++.+|+.++..+.-.+..+ ..+.++.+..++...+.-. +..++.++..++..++
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999877654 3466777888887766532 2267777776665544
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.28 E-value=0.022 Score=49.07 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000369 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~ 963 (1610)
.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478899999999888888889999999999999999999999999999888643
No 88
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.23 E-value=0.13 Score=67.81 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCcCCh
Q 000369 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (1610)
Q Consensus 911 v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~---l~~ll~~l~~~L~~~~~~~ 987 (1610)
-....+.....++..||..+.+ +-..+|.++..+......+|.++..|+..+..... +..+++.+...+..-. +
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~-~- 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD-K- 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh-h-
Confidence 4456677888888889988888 78889999999999999999999999999998765 2334444444444211 1
Q ss_pred hhHHHHHHHHHHHhccCCC--CCchhh-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHH-------HHHHhhcCCh
Q 000369 988 EGRKDLFDWLSKQLTGLSG--FPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (1610)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~--~~~~~~-ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~-------~~~~l~~L~~ 1057 (1610)
..|+.....+..++..... ...+.. +++|++.++.|....||.+|-+++..++..++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2333333333333333222 223344 45669999999999999999999999999888664 3333433444
Q ss_pred hHHHHHHHHHhhcC
Q 000369 1058 PALALILERIKLNG 1071 (1610)
Q Consensus 1058 ~~~~~i~~~l~~~~ 1071 (1610)
..++.|+..+++..
T Consensus 949 ~erkFLeqlldpsk 962 (1549)
T KOG0392|consen 949 EERKFLEQLLDPSK 962 (1549)
T ss_pred HHHHHHHHhcCccc
Confidence 45566666666543
No 89
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=3.5 Score=52.86 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCchhhhHH-HHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 986 ~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
|..+|.++...|+.+... .....+-+. -+..|++|++.+||..|...+..+-
T Consensus 479 n~ivRaaAv~alaKfg~~---~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQ---DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcC---CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 355888888888876522 122333343 4667999999999999999887765
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.96 E-value=1.1 Score=55.38 Aligned_cols=146 Identities=16% Similarity=0.044 Sum_probs=91.9
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
+.|+..+++.+...|..++..+... . .+-...|...|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 3567778888999998888555431 1 22344666677899999999999999887532
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHH
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1610)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... .+-.+..+..++... + ....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHH
Confidence 3455566779999999999998888443 3344444444433322 222344444444321 1 124555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Q 000369 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
.+...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 5666677754 788777776643
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.94 E-value=0.45 Score=57.72 Aligned_cols=175 Identities=21% Similarity=0.201 Sum_probs=116.2
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
+.+++.+.+.+|-.|..+...+..+- -.+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45677788999999999988755432 2668899999999999999999988555442 23
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcC----------ChhhHHHHHHHHHHHhccC
Q 000369 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL----------GAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 936 ~llp~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~----------~~~~R~~~l~~L~~~l~~~ 1004 (1610)
..++.++..+. |.+..||..+..+|..+-..-. +..+...+.+... ...+|..+..-+.. .
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~----~ 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----L 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH----c
Confidence 55677777776 8999999999999877654332 4445555654320 01234444444432 1
Q ss_pred CCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--ChHHHHHHhhcCChhHHHHH
Q 000369 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPALALI 1063 (1610)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~--G~~~~~~~l~~L~~~~~~~i 1063 (1610)
+ ....+.++...+.|...+||.+|..++..+.... ..+.+.+.+..-....+...
T Consensus 177 ~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 177 G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHH
Confidence 1 2344556778889999999999999998877653 22344444444444444333
No 92
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.93 E-value=0.037 Score=41.51 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
++.+..+++|++++||.+|..|++.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44588999999999999999999999875
No 93
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=17 Score=46.79 Aligned_cols=357 Identities=13% Similarity=0.155 Sum_probs=187.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000369 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1610)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~ 684 (1610)
++.+.|.+.+-+.+.+|+..+..++-++.+. .+++..++....-.++. -.++.|=..-
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~---p~Llm~IiRfvlps~~~---elKKLly~yw---------------- 81 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDL---PSLLMTIIRFVLPSRNH---ELKKLLYYYW---------------- 81 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCc---hHHHHHHhheeeccCch---HHHHHHHHHH----------------
Confidence 4567889999999999999988776554432 33333333211001111 1122111111
Q ss_pred HHHHHHhhh-ccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 000369 685 CLLGISERV-ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1610)
Q Consensus 685 il~~LveKl-gd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l 763 (1610)
.++.|. +|.|+... +..+ .+.+-+- .+|.|--+|-.++.+|+++=+.- -+.++++.+
T Consensus 82 ---E~vPKt~~dgkl~~E----MILv---------cna~RkD-LQHPNEyiRG~TLRFLckLkE~E-----Llepl~p~I 139 (948)
T KOG1058|consen 82 ---ELVPKTDSDGKLLHE----MILV---------CNAYRKD-LQHPNEYIRGSTLRFLCKLKEPE-----LLEPLMPSI 139 (948)
T ss_pred ---HHccccCCCcccHHH----HHHH---------HHHHhhh-ccCchHhhcchhhhhhhhcCcHH-----HhhhhHHHH
Confidence 122232 22333211 1122 2333333 37888889999999988765421 134788888
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHHHhhhC------hh-HHHhhh-cccH-----HHHHHH-----------HHHHhcCCCC
Q 000369 764 KDTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLA-DVKP-----ALLSAL-----------DAEYEKNPFE 819 (1610)
Q Consensus 764 ~~~gl~~~n~~VR~aA~~ll~~Ly~~~G------~~-l~~~l~-~lkp-----~ll~~L-----------~~ef~k~~~~ 819 (1610)
+.+ |+|.++=||+.|+-++.++|+... +. +..||. +.-| +.+-.+ ..-+++++.=
T Consensus 140 rac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~ 218 (948)
T KOG1058|consen 140 RAC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSF 218 (948)
T ss_pred HHH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCc
Confidence 885 999999999999999999997621 22 445662 2222 222222 1112222110
Q ss_pred CCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCC----------
Q 000369 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ---------- 889 (1610)
Q Consensus 820 ~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~---------- 889 (1610)
+ +++...--+++...--.+-.+|..-++.+-.++...+....
T Consensus 219 ~----------------------------~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 219 N----------------------------DSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred c----------------------------HHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 0 01110001222222223344444445555555543211111
Q ss_pred CCChhhHH----HHHHh---ccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000369 890 PAGTGELF----GGLRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1610)
Q Consensus 890 ~~~~~eL~----~~L~~---~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~ 962 (1610)
.++ ...+ ..+.. ...|.|. ..--+.-|..+. ..-+..+..++..++..|....-.||.-+..-.-.
T Consensus 271 S~~-p~alk~Aa~~~i~l~~kesdnnv--klIvldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ld 343 (948)
T KOG1058|consen 271 SND-PTALKAAASTYIDLLVKESDNNV--KLIVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALD 343 (948)
T ss_pred cCC-HHHHHHHHHHHHHHHHhccCcch--hhhhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHh
Confidence 001 1111 11222 2245553 333344444443 33456677888889999999999999987777777
Q ss_pred HHHhcCchhhHHHHHHHHhcC----c-CChhhHHHHHHHHHHHhccCCCCCchhhhHHH-HHHhcCCCCHHHHHHHHHHH
Q 000369 963 WLAAVHLDKMVPYVTTALTDA----K-LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 963 ~~~~~~l~~ll~~l~~~L~~~----~-~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l 1036 (1610)
++.+-....++..+..-+... . -+-.=|+.++.-+..+..+.+ +...-+.| ++..+.|.|+.--...-..+
T Consensus 344 LvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~Fv 420 (948)
T KOG1058|consen 344 LVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFV 420 (948)
T ss_pred hhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 776666777666655554311 0 023347888888877655544 44555555 77889999885444443333
Q ss_pred HHHHHHhC
Q 000369 1037 VEILRAGG 1044 (1610)
Q Consensus 1037 ~~l~~~~G 1044 (1610)
...+..++
T Consensus 421 rE~iek~p 428 (948)
T KOG1058|consen 421 REAIEKFP 428 (948)
T ss_pred HHHHHhCc
Confidence 44444443
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.62 E-value=0.28 Score=60.55 Aligned_cols=119 Identities=20% Similarity=0.121 Sum_probs=88.3
Q ss_pred HHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH
Q 000369 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1610)
Q Consensus 326 l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl 405 (1610)
.+..|...+.|.+..|+..+.+.++.+ .-....+.|+..+++..+.|+.++..++... . .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-~------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-R------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-c------cChH
Confidence 478888888999998898888888754 2345667788888999999997776544432 1 1235
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
+.+...+++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..++..+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 667778889999999999888765211 23456677889999999999999998543
No 95
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.44 Score=59.77 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=131.1
Q ss_pred ccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhCh
Q 000369 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1610)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~ 928 (1610)
|+...+-.-++...++++-++|...++-+..++.+ +..|-...|..|...|..|+.|--++|+.+|+.++..+=..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 33333334566778899999999999999888763 34455555777888888999999999999999988776421111
Q ss_pred hHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCC
Q 000369 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1610)
Q Consensus 929 ~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~ 1008 (1610)
+ +--+..++-.+++ .|..+.||.+|..++.- -...+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 e-e~~v~n~l~~liq--nDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 E-ECPVVNLLKDLIQ--NDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred C-cccHHHHHHHHHh--cCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 1 1112223333332 79999999998665521 123567666666643 4556777766665544 221 11
Q ss_pred chhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh-----HHHHHHHHHhh
Q 000369 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIKL 1069 (1610)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~-----~~~~i~~~l~~ 1069 (1610)
.....+.-+-.+|+|+.-+||.+++.++..=.-.+....+...+..|+-+ ..+.|.+.++.
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 22233333556999999999999999986433333344566678888743 33445555543
No 96
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.41 E-value=12 Score=43.60 Aligned_cols=188 Identities=12% Similarity=0.150 Sum_probs=123.3
Q ss_pred ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHH
Q 000369 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1610)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~--Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~ 943 (1610)
+|..=..++..+..++. .+.+.+....+++..+.+... .--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~--~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK--MKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh--CcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455667777763 244444444556666554332 23345677778888888776555566666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cC-cCCh--hhHHHHHHHHHHHhccCCCCCchhh
Q 000369 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DA-KLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1610)
Q Consensus 944 ~l-~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~-------~~-~~~~--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (1610)
.+ |++.|.----+-.-+..+.....+..+.+.+.+.+. .+ .-+| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 77 456665444455555566666666666666666553 11 1011 25667777777776554 34667
Q ss_pred hHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh
Q 000369 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1610)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1610)
.+.| ++..|....+.|+.-+-+.|.......|.+.+.++...+=.+
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 7777 788999999999999999999999999999999988665433
No 97
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.11 E-value=2.9 Score=48.31 Aligned_cols=302 Identities=15% Similarity=0.126 Sum_probs=167.0
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
|.+.+.+-+.+-+....|.-++++++.. .++.|++-.-.-+++-+.+.+ ...+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4566667777888888999999999863 456666542233455555555 33445555667677777776543221101
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cc------hhhHHHHHHHHhcCcCChhh-HHHHHHHHHHHhccC
Q 000369 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEG-RKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 934 ~-~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~-~l------~~ll~~l~~~L~~~~~~~~~-R~~~l~~L~~~l~~~ 1004 (1610)
+ ..-+|-+++.|.++...||+.+.=||..++.-. +. .-.++.+...|.+.. +.. -..-+.|...-+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 135788999999999999999999998876432 11 112344555555432 211 133456655544432
Q ss_pred CC-CCch--hhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCC
Q 000369 1005 SG-FPDA--AHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1610)
Q Consensus 1005 ~~-~~~~--~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~ 1080 (1610)
.. .++. .....| +.+.+.-.+++|-.-|+=++..+.. .+.+.+.-. |+......+.+.+-.-.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~s--------- 298 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHES--------- 298 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCcc---------
Confidence 22 3443 233344 6677888899988877766655432 222333322 22222222333332100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhcccc---------ccCCCChHHHhhhhhcccc
Q 000369 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKDSNKEDRERMVVRRFK 1151 (1610)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~R~~~~~~k~~ 1151 (1610)
..++.|+.|+. +--..| .+.+++.++ .+.++ +.+++|+. .=|.
T Consensus 299 ------------a~iqtPalR~v---GNIVTG-----------~D~QTqviI~~G~L~a~~~lLs~-~ke~irKE-aCWT 350 (526)
T COG5064 299 ------------AKIQTPALRSV---GNIVTG-----------SDDQTQVIINCGALKAFRSLLSS-PKENIRKE-ACWT 350 (526)
T ss_pred ------------ccccCHHHHhh---cCeeec-----------CccceehheecccHHHHHHHhcC-hhhhhhhh-hhee
Confidence 00111111110 000000 011222111 11122 33344322 2387
Q ss_pred ccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCC
Q 000369 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (1610)
Q Consensus 1152 ~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~ 1200 (1610)
....+.-..|+.+.-|...+-+-|+.+|.+.||+.+.+|.=.+...-.+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7666666778888888888888999999999999999999888876554
No 98
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.99 E-value=22 Score=44.29 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHh--hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH---HHHHHHhhcCCh
Q 000369 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (1610)
Q Consensus 344 ~A~~~i~~La~~L--~~~f-~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl---~~l~~~l~~Knp 417 (1610)
.+-.++..|+.-+ |..| +..+..++-.+++.|..+....|++..-++..+-.- + ++++ ..|+.-++.+.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3444555666544 5678 578999999999999999999999999999888653 1 3333 344555667777
Q ss_pred -HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000369 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1610)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~ 466 (1610)
.+|-.++.-|.+.+..... ..+-..+..++-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888887765432 33445567788999999988874
No 99
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.99 E-value=0.92 Score=53.61 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHccccCCCC----ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 869 VRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~i~~~----~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
+...|+|..+.|.+. +.+. ++.=....|...+.-+.-.|+-.-++++..-.--+|+.+.+..+.++..++-.
T Consensus 71 VH~KaLevY~~IF~~----ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFER----IGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHHh----cCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 445677766655542 2221 11223455556667777888888999999888899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCC------C--------CCch
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~------~--------~~~~ 1010 (1610)
+.|....+.+.+...++.+...++-+.+...+...+.+ +|..|..++.|+.+.+.... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999988888888877764 57899999999999998866 1 1222
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.-++..+..+++|.+-=|+..+-..| ..+++
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 23445588899999888887765554 55554
No 100
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.76 E-value=0.61 Score=48.87 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=77.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~llp 939 (1610)
+...||..=.+ +-..+.. . +..-.+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 13 l~~~dw~~il~----icD~I~~--~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLILD----VCDKVKS--D---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHHH----HHHHHhc--C---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 44568965433 4444431 1 22247899999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+.+.+.+ ....|++-+...+..|.....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 88888877 778899999999999998775
No 101
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.69 E-value=0.36 Score=63.93 Aligned_cols=177 Identities=17% Similarity=0.165 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHcc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000369 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1610)
Q Consensus 300 ~~R~eal~~L~~l~~--~~ki~~~~~~~l~~~L~~~l~---D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k 374 (1610)
-+|+.|--.|..+.. ++.+. ..|..+-+.|.+.+. |.|- -....+.....++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 468877777766653 22111 123344445555544 3341 2344456666677777777777 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCCC-hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHh
Q 000369 375 LKEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1610)
Q Consensus 375 lkdkk~~V~~aa~~al~ai~~~~~~~-l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~ 453 (1610)
....-..+|-++..|+..+++..|.. ...+++.+..-++.-.--+|++...-+-.++.......+..+..-++|.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 99999999999999999999862211 22344555555554445566666555555555443334556778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 454 LNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 454 l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+.|....||++|.+++..+..+++.+
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998854
No 102
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.67 E-value=1.9 Score=56.32 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=113.9
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000369 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~-l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll 372 (1610)
+.+++=.+|.+|++.+.+ +..+ .|...++..+.|-+.--|.-+.+..---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 667777889999998765 4443 245667766666555445555554444444444321 145788899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh-HHHHHH
Q 000369 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1610)
Q Consensus 373 ~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (1610)
+-++|+++.+|-.|..++..+=.. -=++.+++.|...+.|+++.||..++-.+..+++..+ .- +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1134456667788899999999999999998886432 11 2233 456677
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHH
Q 000369 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 452 ~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
..+.|++|.|-..|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 788999999988887777666543
No 103
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.61 E-value=0.78 Score=47.69 Aligned_cols=98 Identities=14% Similarity=0.288 Sum_probs=77.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.||..= -++..++.. .+..-.+.+.+|++||+..|.++...||.++..+++..|..|...+ +.|+.
T Consensus 14 l~~~dw~~i----leicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAI----QAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHH----HHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 456788754 344444432 2233478999999999999999999999999999999999997543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D------~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88887753 467899999999999998775
No 104
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.57 E-value=45 Score=46.52 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=90.2
Q ss_pred cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh
Q 000369 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 359 ~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~--~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
.|..-...++..++--+++....+|.-|..|+..|+... .....++...+..-+.+....||..++..+++++-..+.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 344444555666667778999999999999999998751 122345666666777788899999999999999886543
Q ss_pred hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 437 ~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
....+-..+...+.|+.-.||+.+.+-+..++.-.++
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 2366778899999999999999999999999987764
No 105
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=3.3 Score=54.32 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred hccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHH
Q 000369 294 VKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLL 368 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~---l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~-~~~~~ll 368 (1610)
+++++-..|.++|+-+.- ++ +.+...-.-.+.....+..++.+.|..++..|+.||..|+..-|.=.. ++.+.++
T Consensus 812 LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvl 891 (1014)
T KOG4524|consen 812 LSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVL 891 (1014)
T ss_pred hcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 688899999999998764 22 222111111233345566778899999999999999999886654222 5677777
Q ss_pred HHHHHHhcc
Q 000369 369 PVLLEKLKE 377 (1610)
Q Consensus 369 p~Ll~klkd 377 (1610)
|.+-..+.+
T Consensus 892 P~l~~~~~~ 900 (1014)
T KOG4524|consen 892 PWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHH
Confidence 776554443
No 106
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.26 E-value=0.65 Score=50.49 Aligned_cols=133 Identities=21% Similarity=0.241 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHh-ChhHHHhhhhHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000369 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~l-g~~~~~~~~~llp~l-----------l-~~l~D~k~~Vr~aa~~aL~~~~~~~~-------- 968 (1610)
+|+..|+.+++.+++.. ++.|..|-..++|.- + -.+.|..+.||.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999995 555777877777765 2 34579999999999999999987641
Q ss_pred --------------chhhH----HHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC---Cch-hhhHHHHHHhcCCCCH
Q 000369 969 --------------LDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDA-AHLLKPASIAMTDKSS 1026 (1610)
Q Consensus 969 --------------l~~ll----~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~---~~~-~~ll~pl~~~L~D~~~ 1026 (1610)
+..++ ..+..+|+.++ ++..-..+++.+..++...+-. .++ ..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11111 12445555443 5566678888888877776542 233 3344446677888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000369 1027 DVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1027 dVR~aA~~~l~~l~~~~ 1043 (1610)
+||.++-.||+.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887653
No 107
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=22 Score=47.08 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000369 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 912 ~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
....+.-|+.++..+|..|.+.+-..+=+++.++++..+.|+..|..|+.+++.+|+++
T Consensus 565 ~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~ 623 (1014)
T KOG4524|consen 565 VCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG 623 (1014)
T ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC
Confidence 34557889999999999999999999999999999999999999999999999999853
No 108
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.19 E-value=1.7 Score=53.48 Aligned_cols=200 Identities=18% Similarity=0.199 Sum_probs=128.5
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
.-++.+.++++-++|+..++-+.-+... -+.|-...|.-|..-|..|+-|-.+.|+.+|+.++..+-.--+. =+....
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n-een~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN-EENRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-hHHHHH
Confidence 3566778999999999999988777653 23333344566777788899999999999999999887533332 233333
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--Cchhhh
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHL 1013 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~l 1013 (1610)
.++-.++ -.|....||.+|. ++-.+.+- ..|.+.+-..+- +..-|..+... ++.+++.. ....+-
T Consensus 172 n~l~~~v--qnDPS~EVRr~al--lni~vdns----T~p~IlERarDv--~~anRr~vY~r---~Lp~iGd~~~lsi~kr 238 (885)
T COG5218 172 NLLKDIV--QNDPSDEVRRLAL--LNISVDNS----TYPCILERARDV--SGANRRMVYER---CLPRIGDLKSLSIDKR 238 (885)
T ss_pred HHHHHHH--hcCcHHHHHHHHH--HHeeeCCC----cchhHHHHhhhh--hHHHHHHHHHH---Hhhhhcchhhccccce
Confidence 4444443 3788899999973 33333333 345566555532 34446555444 34444431 122233
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhc
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~ 1070 (1610)
+.-+--+|+|+.-+||.++..++..-...--.-.....+..|+-+.+..+..++++.
T Consensus 239 i~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 239 ILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333345899999999999999887554444444556678888888777666776654
No 109
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.09 E-value=0.43 Score=61.59 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh---h-cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---T-HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-- 396 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~---~-~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-- 396 (1610)
|+++++.|...+.-.-..+. +..+..|+..++ + -.-|....++|-||+.+.-.-..|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K---~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK---HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHhhHHHHHHHhccCCccch---hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 45666666665541111011 223333343333 2 24478889999999999999999988888888887654
Q ss_pred --cCCChHhhHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000369 397 --GCLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 397 --~~~~l~~vl~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~ 471 (1610)
.+.+++-++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|+..-||+.|..+=..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 1244566777776533 3554 5799999999998877788877878889999999999999999999999887654
Q ss_pred HH
Q 000369 472 IA 473 (1610)
Q Consensus 472 l~ 473 (1610)
..
T Consensus 1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred hh
Confidence 44
No 110
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.95 E-value=0.87 Score=47.17 Aligned_cols=100 Identities=21% Similarity=0.371 Sum_probs=76.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh-hh-hHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~-~llp 939 (1610)
+.+.+|..= -++..++.. . +..-.+.+.+|+++|+..|++++..|+.++..+.+..|..|... .. .++.
T Consensus 13 ~~~~D~~~i----l~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALN----LELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHH----HHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 356788753 345445532 1 33348899999999999999999999999999999999998754 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000369 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 940 ~ll~~l~D---~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.+.+.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46789999999999999887643
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=28 Score=44.49 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=173.5
Q ss_pred hhcCC-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhh
Q 000369 101 KCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (1610)
Q Consensus 101 K~l~~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll 177 (1610)
|-|.+ .+.-.-.|..|+-..-+.+-.+.+.+.+-+-+- .--+=++..+-.+|..+++.+ +..+++..+...+..++
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL 196 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLL 196 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHh
Confidence 33443 344445677766665555555555555544442 222334455556666666663 45678888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---cccchhhhhHhh
Q 000369 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKEL 245 (1610)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~---------~~p---~r~~rs~~~~~~ 245 (1610)
+|.+=+|-.++.+++..|.++..+. .+. --+-++..|..-.-...-+ +.| +...|--|.-
T Consensus 197 ~D~~~gv~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-- 268 (938)
T KOG1077|consen 197 DDQHMGVVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-- 268 (938)
T ss_pred CccccceeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--
Confidence 9999999999999999998888653 222 2223345554332221100 111 0111111110
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHH---HHHHHHHHhcCCCCCCCC
Q 000369 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGD 322 (1610)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~e---al~~L~~l~~~~ki~~~~ 322 (1610)
....+. +... .-.+.. ..|+.+.- +-..++|-+.+-. .|-+...++-+-.-++.-
T Consensus 269 ------p~~~D~---~~r~------~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l 326 (938)
T KOG1077|consen 269 ------PTPEDP---STRA------RLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL 326 (938)
T ss_pred ------CCCCCc---hHHH------HHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence 000000 0000 000000 12222221 0113444444432 233333333222222334
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCC
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN 400 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~-~~~~~llp~Ll~klk-dkk~~V~~aa~~al~ai~~~~~~~ 400 (1610)
+..-+..|.+.|.+.-.+++..|+..+..|+.. .|. .-++.-.-.++..++ |+-..||.-+...|-+|+.. ..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~N 401 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SN 401 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hh
Confidence 566777888888876667788888887777765 343 334555778889998 88899999999999888875 56
Q ss_pred hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC
Q 000369 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1610)
Q Consensus 401 l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1610)
...|+++++..+.+-.+++|++...=++.+.++..
T Consensus 402 ak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 402 AKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999998877776666654
No 112
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.49 E-value=41 Score=43.19 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=72.8
Q ss_pred hhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcC--ChHHHHHHHHHHHHHHH
Q 000369 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 357 ~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~K--np~vR~~~l~~L~~~l~ 432 (1610)
...|++....++|++|.|+...-..||..+.+.+..+... ....+.-=++.|+...++. ++.+|..++-|+...++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3468889999999999999999999999999999887765 1122222245566655543 59999999999999999
Q ss_pred hCChhHHHHhhhhHHHHHHHhhcC
Q 000369 433 TSSKAAVLKVHKDYVPICMECLND 456 (1610)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~~~l~D 456 (1610)
+.+...- ..++|.+++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISK 113 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhcc
Confidence 8876544 4677888888753
No 113
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.34 E-value=0.67 Score=48.48 Aligned_cols=107 Identities=28% Similarity=0.517 Sum_probs=76.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.+|.. +-.|-+.+.. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 18 ~~~~Dw~~----~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HHH----HHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 45668854 3345555542 1 222488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHH
Q 000369 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVT 977 (1610)
Q Consensus 940 ~ll~~l~D~k~--~--Vr~aa~~aL~~~~~~~~l~~ll~~l~ 977 (1610)
.+...+.++.. . |++-+...+..|....+-+.=++.+.
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~ 130 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQ 130 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHH
Confidence 77776654332 2 89999999999999885433334333
No 114
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.20 E-value=1.3 Score=46.34 Aligned_cols=100 Identities=20% Similarity=0.360 Sum_probs=76.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~llp 939 (1610)
+.+.+|..=.+ +-.++.. .. ..-.+.+.+|++||...|.+++..|+.++..+++..|..|... .+.|+.
T Consensus 17 l~~~dw~~ile----icD~In~--~~---~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLASILE----ICDMIRS--KD---VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHHHHHH----HHHHHhC--CC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 35668875444 4444432 22 2248899999999999999999999999999999999998753 345777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000369 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 940 ~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.+...+. .....|++-+...+..|.....-+
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7776665 466789999999999999887543
No 115
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.13 E-value=19 Score=50.17 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccch--h----hHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHH
Q 000369 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK--T----RAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1610)
Q Consensus 663 ~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K--~----r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~ 736 (1610)
.++++..++....... ..+|..++.+++.+. + +..|.+++..++.+..+. +.+.+.+.+...++ . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6666666665432222 345556666666542 2 344555555555554432 23333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhc
Q 000369 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1610)
Q Consensus 737 ~~l~~l~~~i~~fg~~~l-~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k 815 (1610)
..-.-.+++|-+...-.. -+-.+|+++..- |.+.+-.+|-.|..++|.|+...+..+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 111122223322211000 123577777765 8899999999999999999854432210 0 0
Q ss_pred CCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhh
Q 000369 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1610)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~e 895 (1610)
.+ .+-..|+..+.|..-.+|.+.++..-.++.. ++.+... ..
T Consensus 298 -----------------------------~~------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------YD------DLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------ch------HHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 00 1335788889999999999999998887763 2222221 34
Q ss_pred HHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000369 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1610)
Q Consensus 896 L~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~ 966 (1610)
+..+|+.+..|.+-.++...+..... .+.-.+ .+...++-.+.+.+.|++..||..|+..|..++.+
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~---v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACD---VMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEee---hhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56667777777776665543222111 111111 22222667777889999999999999999999986
No 116
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=92.05 E-value=1.5 Score=44.07 Aligned_cols=97 Identities=18% Similarity=0.328 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh--HHHH
Q 000369 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSD 940 (1610)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~--llp~ 940 (1610)
++..|..-...+.++..++.. .+..+.+++.+|.+||.+.|..++..||.++..+++..|..|..++.. ++-.
T Consensus 10 ~~~~~~p~~~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~ 84 (115)
T cd00197 10 SNENMGPDWPLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVE 84 (115)
T ss_pred CCCCCCCCHHHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHH
Confidence 333444444556666666642 133368999999999999999999999999999999999998876533 3333
Q ss_pred HHH-----Hh-CCCcHHHHHHHHHHHHHHH
Q 000369 941 ILK-----CL-GDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 941 ll~-----~l-~D~k~~Vr~aa~~aL~~~~ 964 (1610)
++. .. .+....||+.+...+.+|.
T Consensus 85 l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 85 LLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 332 11 2456789999999999885
No 117
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.05 E-value=1.2 Score=46.11 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=74.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.+|..=.+ +-.++.. . +..-.+.+.+|++||...|.+++..|+.++..+++..|..|...+ +.|+.
T Consensus 13 l~~~dw~~~l~----icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELILE----ICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHHH----HHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 45678875443 4444432 1 222488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D~k~--~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+...+.++.. .|++.+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77766665432 399999999999998774
No 118
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=5.4 Score=50.42 Aligned_cols=148 Identities=21% Similarity=0.268 Sum_probs=106.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCC
Q 000369 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1610)
Q Consensus 767 gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~p 846 (1610)
||+..|.+||..|..++..+|=..|++... .++=..++++|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~------e~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHA------EEMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccH------HHHHHHHHHHHH--------------------------------
Confidence 589999999999999999999888877521 111122333332
Q ss_pred ccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHH
Q 000369 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1610)
Q Consensus 847 r~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~ 925 (1610)
.+++.++|.=-.+|.+|+..+.++....=.-|.++...+++.-+.+-+ .|+-..|+....+.|.+|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 244445666667899999999888875323344555566666665555 58878899888888888754
Q ss_pred hChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000369 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 926 lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~ 964 (1610)
.+...+.++.++|.+=-.+-|+...||-|+...|-.+-
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 34456778889998888999999999999888776653
No 119
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.80 E-value=33 Score=42.27 Aligned_cols=312 Identities=15% Similarity=0.163 Sum_probs=163.5
Q ss_pred hcCCchhHHHHHHHHHHHHhhccCCCCc-hhhhhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000369 20 LLHKNWKVRNEANIDLAALCDSITDPKD-NRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (1610)
Q Consensus 20 l~~k~WK~R~~ayeel~~~~~~~~~~~~-~~~~~~~~~----~~k~v~D-------sN~~~q~~~leal~~~v~~~~~~- 86 (1610)
|.+.+=-.|.+||-.|...++......+ ....+..++ ++.=+.. .+...-..||.++..|+-...-.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4455566899999999999986432212 222222222 2222222 24566677888888887553210
Q ss_pred -hh-hhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000369 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (1610)
Q Consensus 87 -~~-~~~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~---------~~~~~v~~~L~~---~l~~KnpKv~~~~l~~l 152 (1610)
.. .....++...++. +.....-|..+...+-.+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~-l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIES-LQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 01 1111233333333 221112233333322222211 112223333211 22233 4789999999
Q ss_pred HHHHHHhCCC-CcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000369 153 FQALSEFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1610)
Q Consensus 153 ~~~l~~fG~~-~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~ 231 (1610)
..++.+|-.. .-.....++.+...+-|..+.+|..|..+..++-..+|++ ..+. +.+.+.++..-.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~~-- 225 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSLE-- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhccccc--
Confidence 9999988542 2235567888888888999999999999999998888864 1111 111111111000
Q ss_pred CCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhcc-CChHHHHHHHHHHH
Q 000369 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVAELT 310 (1610)
Q Consensus 232 ~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s-~kW~~R~eal~~L~ 310 (1610)
+.++. +. +. +.+.+.+.+ ++.+.=-..--.+.
T Consensus 226 -~~~~~------------------------------------------~~---~~-~~L~~mi~~~~~~~~a~~iW~~~i 258 (372)
T PF12231_consen 226 -NGKLI------------------------------------------QL---YC-ERLKEMIKSKDEYKLAMQIWSVVI 258 (372)
T ss_pred -cccHH------------------------------------------HH---HH-HHHHHHHhCcCCcchHHHHHHHHH
Confidence 00000 00 00 011111122 11111011112233
Q ss_pred HHhcCCCCCCC-ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcc---hhhhhhHHHHHHHHhccCcH-----H
Q 000369 311 KLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP-----T 381 (1610)
Q Consensus 311 ~l~~~~ki~~~-~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f---~~~~~~llp~Ll~klkdkk~-----~ 381 (1610)
.++..+.+... .+.+.+....+++++.+..+...|..+-..+...+..+- ....+.+..++...++.++. .
T Consensus 259 ~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~ 338 (372)
T PF12231_consen 259 LLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEE 338 (372)
T ss_pred HHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHH
Confidence 34444445543 357888889999999999999999999999988665442 34566677777666654432 4
Q ss_pred HHHHHHHHHHHHH
Q 000369 382 VAESLTQTLQAMH 394 (1610)
Q Consensus 382 V~~aa~~al~ai~ 394 (1610)
++..+...+..++
T Consensus 339 ~~~~ll~~l~~ll 351 (372)
T PF12231_consen 339 VWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHhchH
Confidence 4555555555544
No 120
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=6.1 Score=46.80 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh-hHHH
Q 000369 863 ESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLS 939 (1610)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~-~llp 939 (1610)
.+.+-..|..+++.|+.++..-. ..+.+ +|-+...|. .+++++..++..|..+|+..++.-.+.-+...+ ..++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34467788899999999987511 12222 244455554 889999999999999999988764443333333 2677
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--chhhHH-----HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCc-h
Q 000369 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1010 (1610)
Q Consensus 940 ~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~-----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~-~ 1010 (1610)
.++..+. |..-.+|..|.-|+.+++++-. .+.+++ .|.+.|+++..+...+.-++..+..++.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7877775 4556788999999999998853 455554 57888886433566777888888887776654322 2
Q ss_pred hhhHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1011 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1011 ~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.....+ +.....--+.+++.++..++-.+.....
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 222222 2222333356778877776665554443
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.50 E-value=3.2 Score=54.21 Aligned_cols=185 Identities=18% Similarity=0.128 Sum_probs=110.8
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHH-HHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~-~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ 940 (1610)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... --|..+....=--+...+ ...+ ..+...++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~ya-k~~P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYA-KLKP---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHh-ccCH---HHHHHHHHH
Confidence 67788889999999866555432 22344443 333333 333344433211121221 1122 445667889
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhh--hHHHHH
Q 000369 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (1610)
Q Consensus 941 ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (1610)
+.+-++|.++.+|..|..++..+-..-=++.+++.|...+.++ ++.+|..+.-.+..++.--+. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 9999999999999999988876522111234445555666666 799999999998887644322 1122 223344
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHH--hCh-HHHHHHhhcCChhHHH
Q 000369 1019 IAMTDKSSDVRKAAEACIVEILRA--GGQ-ETIEKNLKDIQGPALA 1061 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~--~G~-~~~~~~l~~L~~~~~~ 1061 (1610)
..+.|.++.|-.+|..+|..+..- .|+ ..+...+..|......
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~ 218 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLS 218 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhh
Confidence 566899999999999888777643 121 2333445666644443
No 122
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.40 E-value=3.2 Score=43.55 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D-~~~~VR~aA~~al~~l~~~ 475 (1610)
..+..+.+..|..-++|+||.+-..++..|..|+.+++...... .-+.++..+.+.+.+ .++.||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999998753221 236788889999988 8999999999999999988
Q ss_pred hCCh
Q 000369 476 VGMR 479 (1610)
Q Consensus 476 ~g~~ 479 (1610)
+++.
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8854
No 123
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.34 E-value=2.3 Score=50.59 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhchhhhh--hhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000369 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (1610)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~--~~~v~~~L~~~l~~KnpKv~ 145 (1610)
+.|..+...+++...+... ...+++..+|-.++- ..+.+|+.|.+|+=.|.=++. ....+..+...+..-.+.++
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533333 234778888877776 478999999999888875543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcC----------hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 146 VPAIDVMFQALSEFGAKIIP----------PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 146 ~~~l~~l~~~l~~fG~~~~~----------~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
..|+.++..++..||...++ ...+++.+.+.+.+.+++||..|..-+.-|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999987654 2458889999999999999999988877765
No 124
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.07 E-value=1.1 Score=48.38 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=69.9
Q ss_pred ChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH---HHHh
Q 000369 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (1610)
Q Consensus 400 ~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l---~~~~ 476 (1610)
..+..++.+.+++.++.-.-+--+..-+..+++..+...+.++++.+++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3456788888888876655555555555555665444556788999999999999999999999999999999 7888
Q ss_pred CChhHHHhhhhccH
Q 000369 477 GMRPLERSIEKLDD 490 (1610)
Q Consensus 477 g~~~~~~~l~~Ld~ 490 (1610)
|+ ++.||+.+|-+
T Consensus 115 G~-aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GE-ALVPYYRQLLP 127 (183)
T ss_pred hH-HHHHHHHHHHH
Confidence 95 58899877654
No 125
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.86 E-value=0.7 Score=58.54 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=126.8
Q ss_pred ccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHH
Q 000369 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (1610)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~ 931 (1610)
.+.|-+++.++..+-.+|.-=|+.+.+.+. .+.+..+ .++++-+...+.|.|..++.++++++..|+..++..
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 355678888899999999998888888775 3443322 568888888999999999999999999999999977
Q ss_pred HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC
Q 000369 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l---~~ll~-~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1610)
..-..++..+-..-.|....+|+-..-|+..+..+... ..++. .+..+++++- .|....+++...+ ..++...
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccch
Confidence 33345666666666789999999999999888776531 23333 4455677663 2332333333332 2222222
Q ss_pred CchhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1008 ~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.++..-+.| +....-|.+..||..|..++..+....-
T Consensus 481 ~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 481 SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 333333444 5556689999999999988877665443
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.59 E-value=11 Score=48.13 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=108.4
Q ss_pred HHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH
Q 000369 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1610)
Q Consensus 326 l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl 405 (1610)
++..|.+...-...+|+...|+.|..+....+.-=+.....+.-.|+.+++|+-++||-.|.-||..+-.-....--++.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~ 165 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV 165 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH
Confidence 33334343333334567777777777665333222355677888999999999999998888888777632111111344
Q ss_pred HHHHHHhh-cCChHHHHHHHHHHHH-------HHHhCC---------------hh-HHH-HhhhhHHHHHHHhhcCCChH
Q 000369 406 EDVKTSVK-NKVPLVRSLTLNWVTF-------CIETSS---------------KA-AVL-KVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 406 ~~l~~~l~-~Knp~vR~~~l~~L~~-------~l~~~~---------------~~-~l~-~~l~~l~p~l~~~l~D~~~~ 460 (1610)
..+...++ +.++.||..++.-+.. .++++. +. .+- ..++.-+-.+-.+|+|..-.
T Consensus 166 n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~s 245 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFS 245 (892)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhH
Confidence 44455555 7889999998865531 111110 00 000 01233445667889999999
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHhhhhcc-----HHHHHHHHHHHhc
Q 000369 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (1610)
Q Consensus 461 VR~aA~~al~~l~~~~g~~~~~~~l~~Ld-----~~~~kki~e~~~~ 502 (1610)
||.|+..++..=.-.+.+..+-.++.+|| ....+.|+..+++
T Consensus 246 Vk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 246 VKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 99999999876444444444667788886 4556667766654
No 127
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=90.51 E-value=1.7 Score=43.88 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=73.8
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHH
Q 000369 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1610)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ 940 (1610)
..+|.+|-.=.-.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~ 83 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQ 83 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHH
Confidence 34566666666667777777653 2233689999999999999999999999999999998777888776655443
Q ss_pred HHHHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000369 941 ILKCL---G--------DNKKHMRECTLTVLDAWLA 965 (1610)
Q Consensus 941 ll~~l---~--------D~k~~Vr~aa~~aL~~~~~ 965 (1610)
|-.+. + +....||.+|.+++..++.
T Consensus 84 Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 84 IRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 33222 2 2456799999999988764
No 128
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.43 E-value=1.3 Score=46.45 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhhHHHhhhhhhC-CCCHHHHHHHHHHHHHHHHhhC
Q 000369 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (1610)
Q Consensus 125 ~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (1610)
++...+.+|.+.+.++||+++.-+|..|-.++++=|.. .+.-+.|+..+.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999987763 2345788888888886 6788999999999988887776
Q ss_pred C
Q 000369 201 K 201 (1610)
Q Consensus 201 ~ 201 (1610)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
No 129
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=3.3 Score=57.40 Aligned_cols=200 Identities=12% Similarity=0.087 Sum_probs=136.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
.+++.+.-++-..|..|++++.+++...+.......++.....+.+...|.+..|+.++..++..+.+.+++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45677888889999999999999987532211111245666777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---c-----hhhHHHHHHHHhc------------------CcCChhhH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L-----DKMVPYVTTALTD------------------AKLGAEGR 990 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~---l-----~~ll~~l~~~L~~------------------~~~~~~~R 990 (1610)
++|.++-..-|....|..+|-+.+......-. + ..+++.+.+.+.. .+ .+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k-~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK-YQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh-hHHHH
Confidence 99999999999999999988888766543111 0 1122222222110 01 12344
Q ss_pred HHHHHHHHHHhccCCCCCc-------hhhhHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCCh
Q 000369 991 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1610)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1610)
...+..+..++...+...+ ...+... +...+.++++.||.+..+++-.+...+....+....+.+++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 5556666666644443211 2223322 66678999999999999999988877766544444444443
No 130
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=90.10 E-value=2.2 Score=44.64 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=73.7
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~-Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~ll 938 (1610)
+.+.||..=.+-.+ .+.. .. ..-.+.+.+|++||. ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 14 l~~~dw~~ileicD----~In~--~~---~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICD----IINE--TE---DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHH----HHhC--CC---CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45668876444333 3321 22 224789999999997 46899999999999999999999988543 4677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000369 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 939 p~-ll~~l~D---~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.. +.+.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 76 6666653 33579999999999999887533
No 131
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.08 E-value=0.71 Score=58.49 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC--CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHH
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~--~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1610)
+|-..++|.|++.|+-.-..||--+..=++.++.+.+ .-.+.|+|.+..++.+.|+.+|..|+..+..++...++..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 5888899999999999999999888777887777621 12457899999999999999999999999988877665543
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 440 ~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
. .+++..+.+.-.|.++..|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 3 233444444444444444444444444333
No 132
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=9.8 Score=49.36 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHHhc--CCC-CCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhh-hHHHHHH
Q 000369 298 KWSERKDAVAELTKLAS--TKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (1610)
Q Consensus 298 kW~~R~eal~~L~~l~~--~~k-i~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~-~llp~Ll 372 (1610)
+=..-.+|+.+|..++. +.. +..--...++..|.++++ +.|.-+...||+|+.+|+..+.....-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877542 221 221124678999999999 889999999999999999999877654333 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhhHHH-----HHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 373 ~klkd-kk~~V~~aa~~al~ai~~~~~~~l~~vl~~-----l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|+-. .=-.|.+...+||..|-+. +..+|+.. .+..+.==+-.+.+.++....+|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 3446777777888777653 33344321 12222211223444555566666665554443 234567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 447 ~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
+|.|...|...+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999998888888888888877776554
No 133
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.74 E-value=2.4 Score=45.44 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000369 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~--~~ 397 (1610)
.+|.+|+..|.+.++ +.+..++.++++++|.|. ..+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 368999999999998 777899999999999885 345654432211111 100 01111111111111 11
Q ss_pred CCChHhhHH-----HHHHHhhcCC-hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000369 398 CLNLVDVVE-----DVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 398 ~~~l~~vl~-----~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~ 471 (1610)
..+.++..+ .++.-+++++ ..-...++..+..++...+... ..+++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123344333 3444455444 3444466667677776555444 56789999999999999999999998888888
Q ss_pred HHHHhC
Q 000369 472 IAKSVG 477 (1610)
Q Consensus 472 l~~~~g 477 (1610)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.67 E-value=0.86 Score=59.00 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=93.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc--c-HhHHHHHHHHHHHHHHHhChh-
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--N-KNLVMATLITLGAVASAMGPA- 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds--n-~~v~~~al~~l~~la~~lg~~- 929 (1610)
|-|-+++.++=.+-..|...+..+.-++.++ ..+.+.+.+-+++.|...=.|. | ..|+..|++|++.|.+.+...
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4467888899999999999999999999875 5566655688888887765544 3 457788999999999977654
Q ss_pred HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000369 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1610)
Q Consensus 930 ~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~ 967 (1610)
+-+|-..++.++...|+|+|-.||..|..|=..|+...
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 77899999999999999999999999999999997643
No 135
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.66 E-value=73 Score=40.95 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=81.4
Q ss_pred ChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCcCChhhHHHHHHHHHHHhc
Q 000369 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1610)
Q Consensus 927 g~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l--~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1610)
...+++.+..++|+++.+++.....||..+.+.+..+-..+.. .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999998877652 22344 5677777654357899999999988887
Q ss_pred cCCCCCchhhhHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHh
Q 000369 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~l~~l~~~~ 1043 (1610)
..+. .+-.++++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~-~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDD-EERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCH-HHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 7743 233455666888886432 333333333444444443
No 136
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=89.08 E-value=11 Score=44.86 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHH
Q 000369 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1610)
Q Consensus 296 s~kW~~R~eal~~L~~l~~--~~ki~~-~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~-f~~~~~~llp~ 370 (1610)
.++|.+--..|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|=..|+.+.+.+.+.++.+ +.......
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~--- 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIY--- 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHH---
Confidence 6889999999999988765 333321 223468888999998 777788899999999999888864 22222223
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH
Q 000369 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1610)
Q Consensus 371 Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1610)
.+.|+..+.+-.-+||-..++++...+-..++ .+..+++.++-.+
T Consensus 99 ----------------------------------~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 99 ----------------------------------SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 34444455555667888888888777765566 6677889999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 451 ~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
..+++|...|+-+...+.+..+...+|++.
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999999763
No 137
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=4.3 Score=47.45 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=108.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCC-ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHH
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~-~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~ 932 (1610)
+.+.|+..+.|.+-|++-.|--.++.+.... .++.+- .-|. ++.|.+.|.|+--..+....-||..|+-.-+...--
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~-lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGS-LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCC-chHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 4567777788888888877777777665432 111110 0012 344556667777778888888888887654443211
Q ss_pred hhhhHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccC
Q 000369 933 SSKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 933 ~~~~llp~ll~~l~D~-k~~Vr~aa~~aL~~~~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1610)
.=..|+.+++..|.-+ +..++=+|..+|..++.... . .--+|.+.+.+.++. -.++.++-..++.+--.-
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALND 407 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhcc
Confidence 1123566666655432 23477777788888776331 1 123566777776653 345666555555432111
Q ss_pred CCCCchh--hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 1005 SGFPDAA--HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 1005 ~~~~~~~--~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
.....+. -++..++..+.|.+.+||-+|.++|..+...
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 1111121 2333366677899999999999999887653
No 138
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.81 E-value=5.9 Score=47.17 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=90.5
Q ss_pred HHHHHhhhcchh--hhhhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHH
Q 000369 351 NLARGLRTHFSG--SSRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1610)
Q Consensus 351 ~La~~L~~~f~~--~~~~llp~Ll-~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L 427 (1610)
.+-+.....+.+ ....++..++ -.+..+.+.||+.+..|+.-+.-.....-.+.++-+...++.....+|..+++.+
T Consensus 9 ~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 9 SLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333333334554 2346676666 4556777899999999998876541122345566677777777899999999999
Q ss_pred HHHHHhCChhHHHHh--------hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 428 TFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 428 ~~~l~~~~~~~l~~~--------l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 89 ~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 89 FDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999988875544322 247888999999999999999999999987733
No 139
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=27 Score=45.74 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=139.5
Q ss_pred HHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHh
Q 000369 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1610)
Q Consensus 719 ~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1610)
+++.+..+ ..+-+-++..++..|.++++.-... .+....+++.+... +.|.++=|==.|++.++.|...+..++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 5566778999999999999843222 33455678888888 999999999999996666654444332
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHH
Q 000369 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1610)
Q Consensus 798 l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1610)
-|.+.+..+.+-.+.+ + |. + -++.+.++ .-++++
T Consensus 804 ----l~dL~e~Y~s~k~k~~----~--------------------d~-----~-lkVGEai~------------k~~qa~ 837 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ----T--------------------DY-----R-LKVGEAIL------------KVAQAL 837 (982)
T ss_pred ----HHHHHHHHHhcccCCC----c--------------------cc-----e-ehHHHHHH------------HHHHHh
Confidence 2222222222211110 0 00 0 00111111 123334
Q ss_pred HHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH-hCCCcHHHHHHH
Q 000369 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC-LGDNKKHMRECT 956 (1610)
Q Consensus 878 ~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~-l~D~k~~Vr~aa 956 (1610)
++++..- +.-|+..+...+.|+....+..+|..+|.++..+......++..++-.++.. -.|....||+||
T Consensus 838 Gel~~~y--------~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 838 GELVFKY--------KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred ccHHHHH--------HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 4444321 3455666666667888888999999999999987654444555556555543 368899999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000369 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 957 ~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1610)
..-+......+| ..++|.+...+.+. -..+..+. -.|.+..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl------~~tl~~~v-----------------------r~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL------DETLLSYV-----------------------RQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH------HHHHHHHH-----------------------hcCchhHHHHHHHHHH
Confidence 888888887777 33445433333221 01111111 1445667888888888
Q ss_pred HHHHHHhC
Q 000369 1037 VEILRAGG 1044 (1610)
Q Consensus 1037 ~~l~~~~G 1044 (1610)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 77765443
No 140
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.40 E-value=15 Score=45.69 Aligned_cols=174 Identities=20% Similarity=0.127 Sum_probs=109.1
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHH
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l 408 (1610)
.+.+.+.....+|+...|+.+..+....|.-=+.....++-.|.+++-|..+.||-.|..||..+-.-.-..=.++...+
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l 174 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLL 174 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 33333444456678888888888888877644566777888888888999999998888888777653111112344444
Q ss_pred HHHhh-cCChHHHHHHHHHHH-------HHHHhCChh-------HHHHhhhhH-----------HHHHHHhhcCCChHHH
Q 000369 409 KTSVK-NKVPLVRSLTLNWVT-------FCIETSSKA-------AVLKVHKDY-----------VPICMECLNDGTPEVR 462 (1610)
Q Consensus 409 ~~~l~-~Knp~vR~~~l~~L~-------~~l~~~~~~-------~l~~~l~~l-----------~p~l~~~l~D~~~~VR 462 (1610)
...++ +.+..||..++.-+. ..++++... ...++++.+ +-.+..+++|.+-.||
T Consensus 175 ~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~ 254 (885)
T COG5218 175 KDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVK 254 (885)
T ss_pred HHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHH
Confidence 45555 556788887765432 111211100 011122211 1245668999999999
Q ss_pred HHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhc
Q 000369 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1610)
Q Consensus 463 ~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~ 502 (1610)
.++..++..-...--+-.+-.+++.||-.+++-....+++
T Consensus 255 ~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~ 294 (885)
T COG5218 255 GALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKG 294 (885)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998776655445456678889998777654444443
No 141
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.03 E-value=3.5 Score=41.42 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhh--hHHHHHHH----H-h-
Q 000369 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----K-L- 375 (1610)
Q Consensus 304 eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~--~llp~Ll~----k-l- 375 (1610)
..+..|..+++.. +..+.++++.|.++|.+.|..++..|+.++..+.+.-+..|..++. .++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566677766432 3457899999999999999999999999999999999998886643 23333322 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000369 376 KEKKPTVAESLTQTLQAMH 394 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~ 394 (1610)
.+....|++.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677777777776653
No 142
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=2.5 Score=52.56 Aligned_cols=107 Identities=25% Similarity=0.414 Sum_probs=81.3
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~l 937 (1610)
..+.+.||..=.+ |.+++.. ..-. ..|++.+|++|++..+..+...||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567889987555 4444432 1111 36999999999999999999999999999999999999843 3468
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHH
Q 000369 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPY 975 (1610)
Q Consensus 938 lp~ll~~l~D~--k~~Vr~aa~~aL~~~~~~~~l-~~ll~~ 975 (1610)
+..++...+.+ ...||+-+...|++|....+- +.-+|.
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~ 123 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPD 123 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchh
Confidence 88888888765 567999999999999887642 443343
No 143
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.91 E-value=53 Score=42.48 Aligned_cols=50 Identities=4% Similarity=0.074 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC-ChHHHHHHHHHHHHHHH
Q 000369 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 380 ~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K-np~vR~~~l~~L~~~l~ 432 (1610)
-+..+....|+..+... ...+++.+ |.+++.+. .++....|+.++..++.
T Consensus 267 e~~~ekvl~aiT~~ae~--~~veRF~p-iv~gl~~~e~~~l~vacmq~INal~t 317 (1102)
T KOG1924|consen 267 ENGLEKVLEAITTIAEA--KPVERFRP-IVEGLDFLEKQQLQVACMQFINALVT 317 (1102)
T ss_pred hhHHHHHHHHHHHHHhh--cchhhhhh-HHHHHhccchHHHHHHHHHHHHHhcC
Confidence 33444444555555443 33444333 44566644 67777788877765543
No 144
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.64 E-value=9.8 Score=39.41 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.8
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhh-hhHHHHHHHhhcC---CChHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~~~l~D---~~~~VR~aA~~al~~l~ 473 (1610)
..+..+.+..|..-++++||.+...++..|..|+.++++.....+. +.++..+.+.+.. .++.||+.+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999874322222 3556667777765 58899999999999999
Q ss_pred HHhCCh
Q 000369 474 KSVGMR 479 (1610)
Q Consensus 474 ~~~g~~ 479 (1610)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 999864
No 145
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=87.23 E-value=1.1e+02 Score=40.71 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHHh--ChhHHHhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHh--cC----chhhHHHHHHHHhcC
Q 000369 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAA--VH----LDKMVPYVTTALTDA 983 (1610)
Q Consensus 916 l~~l~~la~~l--g~~~~~~~~--~llp~ll~~l~D~k--~~Vr~aa~~aL~~~~~~--~~----l~~ll~~l~~~L~~~ 983 (1610)
++|+|.++..- +.++...+. .++|-+.+.|.... ..+.-.+...+.+++.. |. -..+++.+.+.|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 44444444432 445666664 57777777775432 23444444555554422 11 124566777777644
Q ss_pred cCChhhHHHHHHHHHHHhccCCCCCch---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
..+-+.-..++..+.+++.+-.+...+ .+...-++..+.|+|++||+.+-.||..++.+
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 323344445555555555442221111 23334488899999999999999999988865
No 146
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=34 Score=40.80 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=112.5
Q ss_pred ccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHH
Q 000369 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLP 369 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~----~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~llp 369 (1610)
.+.+-.+|.+|++.|..++.. ..+.+ .+-+...+. .+++++..|+..|+.+|+..+.-=-+-=+.. =...++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 456778889999999887732 22221 233344444 8889999999999999999887422110111 112677
Q ss_pred HHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhhH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhCChh-HHH
Q 000369 370 VLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA-AVL 440 (1610)
Q Consensus 370 ~Ll~klk-dkk~~V~~aa~~al~ai~~~~~~~l~~vl-----~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~-~l~ 440 (1610)
.|+..+. +..-.++..+--|+.+++++...+...++ ..|..++++ .+.+.|.-++.++..+++..... .+.
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777774 45557778999999999987322233333 346677887 66888888999999888765321 111
Q ss_pred HhhhhHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 441 KVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 441 ~~l~~l~p-~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
. ....+ .+.....--+-++++++..++-.+...+..+
T Consensus 250 ~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 250 S--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred H--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 1 11122 2223334445577888877777666665433
No 147
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.04 E-value=8.3 Score=40.18 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=63.2
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHh-hhhHHHHHHHhhcC------CChHHHHHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 471 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~~~l~D------~~~~VR~aA~~al~~ 471 (1610)
.+..+.+..|..-++++||.+-..++..|..|+++++...-... -+.++..+++.+.+ +++.||+...+.+..
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 45566677777788999999999999999999999987532222 25667777777753 688999999999999
Q ss_pred HHHHhCC
Q 000369 472 IAKSVGM 478 (1610)
Q Consensus 472 l~~~~g~ 478 (1610)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8888874
No 148
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=28 Score=45.49 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=113.8
Q ss_pred HHHhhcCCC-ChhHHHHHHHHHHHHHHHcccc-CCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 857 TLVKSLESP-DWKVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 857 ~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~-i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
.|+.++... +--...+++.++.+++.=.+.. +..-....++++|...|++ .|..+...||+++.+|+.++.+...-.
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 567777655 6666778888888777532221 1111246799999999975 689999999999999999998887654
Q ss_pred hh-hHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhcc
Q 000369 934 SK-GVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1610)
Q Consensus 934 ~~-~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l--------~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1610)
+. ..+|.++.+|-. .--.|.+-+.+||..+.+.-+- ..++- .++.+.. +. .|. ++...+.+-.+
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi---~a-QR~-AlaiaaN~Cks 324 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSI---HA-QRV-ALAIAANCCKS 324 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHH---HH-HHH-HHHHHHHHHhc
Confidence 44 478888887754 4556888888888888765431 11111 1222221 12 243 34444444444
Q ss_pred CCC-CCchhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 000369 1004 LSG-FPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1004 ~~~-~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1610)
++. ..++..-..| +...|...+..+-+.+.-|+-.+...+
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 443 3333333344 555666666667777777877766544
No 149
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=86.54 E-value=6.1 Score=47.16 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=128.3
Q ss_pred ccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccchh---HHHHHHHh-hcCCCCCccHHHHHHHHHHHHHHHHHHc-
Q 000369 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS---VEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATA- 674 (1610)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~---~~~lv~~l-~~~p~~~DsN~~V~~~~l~~l~~l~~~~- 674 (1610)
+.+++-+.+....+.|-.|..++..+.+.+..+.-.... .+.+-..+ .....++|-...+.++.|+.+.-++..+
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahli 471 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLI 471 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566677888899999999998888776553211111 11110000 0000145666678888888888776654
Q ss_pred --CCCch----hhHHHHHHHHHhhhccc--hhhHHHHH---HHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHH
Q 000369 675 --TKFPK----KCVVLCLLGISERVADI--KTRAHAMK---CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1610)
Q Consensus 675 --~~~~~----~~~~~il~~LveKlgd~--K~r~~a~~---~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~ 743 (1610)
..|+. .|+..-++.+.-.-||. +++-.|.+ .|-.+.+.-..+.|-+.|...+..+|.|-+-..-...|.
T Consensus 472 kehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLa 551 (666)
T KOG4825|consen 472 KEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLA 551 (666)
T ss_pred chhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHH
Confidence 23443 35555556666666764 45555554 444455666667777777777767888887777677777
Q ss_pred HHHHHhCCC--CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHH--------HHHHHHHHH
Q 000369 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA--------LLSALDAEY 813 (1610)
Q Consensus 744 ~~i~~fg~~--~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~--------ll~~L~~ef 813 (1610)
.++...|.. ++-......+-... ..+.--++|.+|...++.+|+... .+...++|.|. +.+.+-+-|
T Consensus 552 rllkdlgkGragfiediakkfgVpa-eehglndkreaafaiicdmtrdhQ--arsIgedLmpddskngriilvksefEgF 628 (666)
T KOG4825|consen 552 RLLKDLGKGRAGFIEDIAKKFGVPA-EEHGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMPDDSKNGRIILVKSEFEGF 628 (666)
T ss_pred HHHHhcCCCccchhHHHHHHhCCCc-cccchhHHHHhHhhhhhhhcccHH--HHHHHhhcCcccccCCceEEeHHHhhhh
Confidence 888877653 22111122222333 566667899999999999997543 33334444442 334444555
Q ss_pred hcCCCC
Q 000369 814 EKNPFE 819 (1610)
Q Consensus 814 ~k~~~~ 819 (1610)
.++.+.
T Consensus 629 AkiDgr 634 (666)
T KOG4825|consen 629 AKIDGR 634 (666)
T ss_pred hhccCC
Confidence 565543
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=1.3e+02 Score=39.54 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=58.1
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHhhh----ChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCC-hHhHH
Q 000369 686 LLGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLI 760 (1610)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~----~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~-~k~li 760 (1610)
+..|.+-+-|--....+...|..+..-. .|..-...++..+ --.|..||.++...++++. ..... ...+.
T Consensus 431 L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~ 505 (865)
T KOG1078|consen 431 LEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSIL 505 (865)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHH
Confidence 3344444444444445555555554422 2333334444432 3468899999998776655 33222 34566
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
-.++.+ +.|++.+||+.|.-.+..+-
T Consensus 506 vllkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 506 VLLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 666775 99999999999999888776
No 151
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.65 E-value=1.4e+02 Score=39.84 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcCC
Q 000369 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1610)
.|+..+.-+++.|+-+-+ ..++.++|.+.+-|.- ....||....-++..+..+.+ .+.-+|.|...|.++ +
T Consensus 946 ~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp--~ 1019 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP--S 1019 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--h
Confidence 466777777877776644 4567778888877754 445688888888888877664 688899999999988 6
Q ss_pred hhhHHHHHHHHHHHhccCCCCCch-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 987 AEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
+.+|..++..|+++++.--- -+ -.+..-++..|-|.+++||.-|..+++.+...
T Consensus 1020 ~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 89999999999998764211 11 23444466678899999999999999988764
No 152
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.53 E-value=14 Score=44.52 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=82.1
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHh
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVD 403 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~-----~~l~~ 403 (1610)
.|...++.-|.+|+..|+.-+..+-..--.....+.-.+++.+.+..-|.-..||++....++.++-..| ....-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3344455667777777777776665552222334566778888888889999999999999999665422 22345
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHH
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1610)
+++.+..+|.|-.|.+|..++.||..++..+++...
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 678888999999999999999999999999977543
No 153
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=85.44 E-value=6.2 Score=42.38 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.0
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcCChHHHH
Q 000369 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk------------------~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~Knp~vR~ 421 (1610)
++...++|.++.-++-++ -.+|.++-+|+.+++.. ....+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777776655443 36899999999999987 224567889999999999 999999
Q ss_pred HHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
-+...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998776544 44455788888888777
No 154
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.12 E-value=4.3 Score=44.24 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=91.3
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHH---hChhH
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 930 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~---lg~~~ 930 (1610)
+.+.|.+.|.+.++--|.-|-+.+.+++.....+|.|-. .+|+..|+.-|.-.|..|...+|++|+.|... .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999999999999999999998876667787764 89999999999999999999999999999864 57889
Q ss_pred HHhhhhHHHHHHH--Hh----C-----CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000369 931 EKSSKGVLSDILK--CL----G-----DNKKHMRECTLTVLDAWLAAVHLDKM 972 (1610)
Q Consensus 931 ~~~~~~llp~ll~--~l----~-----D~k~~Vr~aa~~aL~~~~~~~~l~~l 972 (1610)
-||-++++|.+-. .. + |++..+-+-...+|..+-.+-|.+.+
T Consensus 194 VPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAf 246 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAF 246 (262)
T ss_pred hhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccce
Confidence 9999999997632 11 1 34555666666666666655554443
No 155
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=85.03 E-value=3.1 Score=46.16 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChh
Q 000369 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1610)
Q Consensus 909 ~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~ 988 (1610)
.......+++++.+...+|....+++..++-.+-+.-.+..-..|+.+..|+.+.++.+|++.++..+-=.+.+......
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556788999999999999888888888888877777777889999999999999999999887643322321111233
Q ss_pred hHHHHHHHHHHHhccCCCCCchhhhHHHHHHhc
Q 000369 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (1610)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (1610)
.|.-++-.|.+.+.+. ....+.+.+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 4665565565544332 1234566666655543
No 156
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.87 E-value=1.2e+02 Score=38.23 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=46.8
Q ss_pred hhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC---CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 715 ~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~---~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
|..-+.+++..+ --.|.-||++++..|++ ||.. .+....+...++.+ ++|.+.+||+-|.-++..|-
T Consensus 485 P~~yvrhIyNR~-iLEN~ivRsaAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 PGKYVRHIYNRL-ILENNIVRSAAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cchHHHHHHHHH-HHhhhHHHHHHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 334445555553 35677889999887654 5543 23345677777775 99999999999998887775
No 157
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.48 E-value=5.2 Score=40.50 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh---HHHHHHHhh--------cCCChHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~~~l--------~D~~~~VR~aA~~ 467 (1610)
....++++.|..-|++++|.||.-+|..|..++..-+. .+...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 34567888888889999999999999999988876543 33322222 333333322 4567799999999
Q ss_pred HHHHHH
Q 000369 468 VLAAIA 473 (1610)
Q Consensus 468 al~~l~ 473 (1610)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
No 158
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.18 E-value=4.1 Score=39.23 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHh
Q 000369 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1610)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~ 484 (1610)
++.++.-+.+..+.+|...+..|.++++.... .....+.++..+...+.|.++=|=-.|.++|..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 44555666788899999999999999987651 1123478889999999999999999999999999999998776555
Q ss_pred hh
Q 000369 485 IE 486 (1610)
Q Consensus 485 l~ 486 (1610)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 54
No 159
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.16 E-value=10 Score=49.35 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=117.8
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHH--ccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~--a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+.+..+.|+.--+|..|+..+..+++. ....+.+ ..++.+....|.|-+.-|...|++.+..++.. |-
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~---ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG---EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH---HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc
Confidence 556677888888999999999999983 2122222 45788889999999999998888877777665 55
Q ss_pred hhHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccC
Q 000369 935 KGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~-~---Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1610)
+.++|.+.+-+...|+ . .|=-+-+++..+++..| .+.++..+..+..++ .-.-|...+..+..+....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHH
Confidence 6788888875543332 2 23333366666666665 233333344444433 2334877777776655443
Q ss_pred CC--CCchhhhHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhChHH
Q 000369 1005 SG--FPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQET 1047 (1610)
Q Consensus 1005 ~~--~~~~~~ll~pl~~~-L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1610)
.. +..+.+.+..++.. -.|...-||.+|...+..+....|++.
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 32 22333444444443 379999999999999999999999653
No 160
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=17 Score=50.72 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=134.1
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
..++.=++=+.|..||.+|..+++...... +-++.....+.+++.|-+..|+....+.+..+..++++...||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 344444666788889999999875322221 225667778888889999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CC-ChHhhHHHH----------------HHHhhcCChHHHHHH
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CL-NLVDVVEDV----------------KTSVKNKVPLVRSLT 423 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~--------~~-~l~~vl~~l----------------~~~l~~Knp~vR~~~ 423 (1610)
|..+-..-|.-..|..+|.+.+...+.-. |. .+-.+..++ .+.++.|-+++...+
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99999999999899988888887665420 10 011111121 122356678888888
Q ss_pred HHHHHHHHHhCChh-HHH---Hhhhh--HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 424 LNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 424 l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+..+...+...+.. .+. ...+. --..+-+.+.+..+.+|.+..+++-.+.+.+...
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 88888888554321 111 11121 1245667889999999999999998888776544
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.79 E-value=16 Score=49.36 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=90.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhc
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~ 414 (1610)
-+|+.+...|--+++.+.-- .. .|...-+|.++.-+ +-+.+.||..+..++.-+.-...+-++..-+.+..-+.+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~i-Sa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCI-SA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhh-hH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 44566677776666654322 22 34555566666666 467788887666666555432134466777888899999
Q ss_pred CChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
-++.||..|+..|..++-+- ..+ .|-.++.+..|+.|+++++|+-|..-|-.+.+.
T Consensus 1010 ~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 99999999999999887642 111 255678899999999999999999766665543
No 162
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.77 E-value=21 Score=44.51 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=104.5
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-cHhHHHHHHHHHH---HHHHHh-C-h--hHH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG---AVASAM-G-P--AVE 931 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~~~al~~l~---~la~~l-g-~--~~~ 931 (1610)
+.+-+.+-..|.+||+.|+. ...++.|++.+...+.+. ..+|++.-+..|. .|+.++ . + .++
T Consensus 214 ~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 34556889999999998862 122588888888888664 3444444433333 333443 2 2 267
Q ss_pred HhhhhHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--ch----hhHHHHHHHHhcCcCChhhHHHHHH
Q 000369 932 KSSKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LD----KMVPYVTTALTDAKLGAEGRKDLFD 995 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~----------D~k~~Vr~aa~~aL~~~~~~~~--l~----~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1610)
+|+..++|.++.|+- |+.=.+|+-|...+..++.+.+ +. +++..+..++.+.+-.+....+++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 999999999999875 3344599999999999988765 22 3444555555544324556677777
Q ss_pred HHHHHhccCCC---CCchhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHhCh
Q 000369 996 WLSKQLTGLSG---FPDAAHLLKPASIAMTDK---SSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 996 ~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~---~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
.|..+-...-. .+.+.....-+-..+.+. +.-.+..|..+...+..+...
T Consensus 364 gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 364 GLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77653221111 122222222222233332 333466677777777666554
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.73 E-value=9.8 Score=46.58 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhc------CC------ChHhh--
Q 000369 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE---KKPTVAESLTQTLQAMHKAG------CL------NLVDV-- 404 (1610)
Q Consensus 342 ~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd---kk~~V~~aa~~al~ai~~~~------~~------~l~~v-- 404 (1610)
+..|+.++..|++..++...+.+..++..++..... .+..-.++|.-.+.++...+ .+ .+.++
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 455555555555554444444444444445543322 12223344444444444331 01 12222
Q ss_pred ---HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000369 405 ---VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1610)
Q Consensus 405 ---l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al 469 (1610)
+|++. .-.++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 308 ~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 308 QHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23333 2237789999999999998766665554 477899999999999999999998764
No 164
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=4.6 Score=49.70 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=67.1
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHh
Q 000369 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1610)
Q Consensus 334 l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd-kk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l 412 (1610)
++|.|--|++.|.-++|.++-.= ..+++..++.+.+ .+..||-...-+|...+.. ++....++.+..-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 45666666666666665543211 2355566666644 3666776666666555543 44444444444445
Q ss_pred hcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChH
Q 000369 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
.+.|--||+.++..+..++-.+.+. +.+..+.|.+.+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5777777777777777666655543 4444466666666666666554
No 165
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.50 E-value=3.6 Score=45.30 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 000369 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1610)
Q Consensus 129 v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1610)
-+..+++...+.+++++..|+..+..+++ +|. ++|+..+|.+..+..|+|+.+|+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 35566778889999999999999988886 676 6899999999999999999999999999988875553
No 166
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.37 E-value=14 Score=51.57 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=113.5
Q ss_pred hhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCC
Q 000369 1171 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLT 1250 (1610)
Q Consensus 1171 ~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~ 1250 (1610)
+=+.|...|.+.+-..|++|+..+-.++.....-+...-|-++.-|..||+|-...|=+++++.....+-. + =+
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~----~--~~ 333 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN----N--PS 333 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc----C--ch
Confidence 33478888888899999999999999887765444443445667777899999999999999999876543 1 23
Q ss_pred HHHHHhhhHHHHHhhCCChHHHHHHHHHH---HHHHHhcCCccccHHHHHhcccCCchhhHHHHHHHHHHHHHh
Q 000369 1251 ESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321 (1610)
Q Consensus 1251 ~~ea~~~lp~l~~K~Gd~k~~vr~~v~~i---l~~~~~~~~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~ 1321 (1610)
-.++...+-++-...-|..+.+|..|--. ...+...|.+. ++.++.|-+.-|-+++|.+|+.-|..+.++
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34678888888888889888888665433 24455667777 999999999999999999999999999987
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=83.14 E-value=18 Score=41.94 Aligned_cols=169 Identities=13% Similarity=0.127 Sum_probs=104.9
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~l 367 (1610)
...+.+.+-+.|..|+..|..+.....-.. ..| +-..+...+. ..|+.+...+++++..|. ...++...+...
T Consensus 60 ~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~ 135 (254)
T PF04826_consen 60 GSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANY 135 (254)
T ss_pred HHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhh
Confidence 334566777888889999887763211100 122 2233333444 568888888999999885 334445556667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----hHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhCCh-----
Q 000369 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK----- 436 (1610)
Q Consensus 368 lp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-----vl~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~----- 436 (1610)
+|.++..+......++..+..+|..+..+ ..-..+ ++..++.-++.+ +..+-..++.|+.++-....+
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~ 214 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF 214 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee
Confidence 88888888777777887777777777654 111112 223344444443 456777888888887554432
Q ss_pred -------hHHH---HhhhhHHHHHHHhhcCCChHHHHH
Q 000369 437 -------AAVL---KVHKDYVPICMECLNDGTPEVRDA 464 (1610)
Q Consensus 437 -------~~l~---~~l~~l~p~l~~~l~D~~~~VR~a 464 (1610)
..+. .-.+.+...+.....++|++||+.
T Consensus 215 ~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 215 VQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred ccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1121 122567778888889999999875
No 168
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.03 E-value=12 Score=39.06 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=63.3
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcCCChH----HHHHHHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPE----VRDAAFSVLAAIA 473 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D~~~~----VR~aA~~al~~l~ 473 (1610)
.+..+++..|..-++|+||.+...++..|..|+.+++...... .-+.++..+.+++.++... ||+.+.+.+....
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4455666777778899999999999999999999987543222 1255777777766544432 9999999999999
Q ss_pred HHhCChhHHHhhh
Q 000369 474 KSVGMRPLERSIE 486 (1610)
Q Consensus 474 ~~~g~~~~~~~l~ 486 (1610)
..++..+-.+++.
T Consensus 118 ~~f~~~~~~~~i~ 130 (140)
T PF00790_consen 118 EAFKSDPELSLIQ 130 (140)
T ss_dssp HHTTTSTTGHHHH
T ss_pred HHHCCCCCchHHH
Confidence 9996543233333
No 169
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.95 E-value=16 Score=40.36 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH--
Q 000369 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-- 440 (1610)
Q Consensus 363 ~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-- 440 (1610)
.+..+++.+++.+-.++..||..+...+..+...+-+++..++|.+..-..+.|+.+|..+...+....++++.-...
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356678889999999999999999999999998877888999999998888999999999999999988887542221
Q ss_pred -HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 441 -KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 441 -~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
+.++.....-..+-.|.....+......++.++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 1222222222233445444333335556666666655
No 170
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.81 E-value=17 Score=37.68 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=64.8
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAK 474 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D~~~--~VR~aA~~al~~l~~ 474 (1610)
..+..+.+..|..-++++||.+-..++..|..|+.+++...-.. .-+.++..+.+.+.++.. .||+...+.+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 35567778888888999999999999999999999998653222 235677788888777554 499999999999999
Q ss_pred HhCCh
Q 000369 475 SVGMR 479 (1610)
Q Consensus 475 ~~g~~ 479 (1610)
.+++.
T Consensus 112 ~f~~~ 116 (133)
T smart00288 112 AFKND 116 (133)
T ss_pred HHcCC
Confidence 88754
No 171
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.51 E-value=16 Score=43.02 Aligned_cols=137 Identities=13% Similarity=0.210 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhc----ch--hhhhhHHHHHHHHhc--------cCcHHHHHHHH
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESLT 387 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~----f~--~~~~~llp~Ll~klk--------dkk~~V~~aa~ 387 (1610)
.+.-++..+...+.|....+...+|+|+..+....... +. .+...+-..+...+- +....+...+-
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45678888889999999999999999999999866533 23 447777778887777 77778888999
Q ss_pred HHHHHHHHhc--------CCChHhhHHH-HHHHhh--cC--ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 388 QTLQAMHKAG--------CLNLVDVVED-VKTSVK--NK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 388 ~al~ai~~~~--------~~~l~~vl~~-l~~~l~--~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
.|+..++... ...+.+++-+ |+..+. .+ .+.++...++.+..++...+.. ..++++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHh
Confidence 9999986530 1224455543 666665 23 5899999999999999886654 4478999999999999
Q ss_pred cCCCh
Q 000369 455 NDGTP 459 (1610)
Q Consensus 455 ~D~~~ 459 (1610)
.+++.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88763
No 172
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.41 E-value=3.6e+02 Score=41.87 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCcc
Q 000369 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1610)
Q Consensus 753 ~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~ 832 (1610)
.+|..-+++.+... +.+.|..+|.++..++..++...-.. |++ +.+..
T Consensus 979 ~lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~----l~~-----------------------~~~~~---- 1026 (3550)
T KOG0889|consen 979 MLDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLI----LGS-----------------------PERAF---- 1026 (3550)
T ss_pred ccCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHh----hcC-----------------------cchhh----
Confidence 45667788888886 99999999999999988776433211 110 00000
Q ss_pred CcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccccHhH
Q 000369 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNL 911 (1610)
Q Consensus 833 ~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~~~~eL~~~L~~~L~Dsn~~v 911 (1610)
...+...|-+.++..+-++.|..|..+...+.-++..-+ ...- ..+.+++.++.-++.|.-..+
T Consensus 1027 --------------~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~ 1091 (3550)
T KOG0889|consen 1027 --------------KLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEV 1091 (3550)
T ss_pred --------------ccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCcccc
Confidence 011233344455556666777777776666665554321 1100 013445555554444332211
Q ss_pred HH----HHHHHHHHHHH----HhChh-HH-HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000369 912 VM----ATLITLGAVAS----AMGPA-VE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 912 ~~----~al~~l~~la~----~lg~~-~~-~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.. .+-.++-.+-. ..+.. -. .....++..+..-+-+.+..||+.+..+|..+.+..|
T Consensus 1092 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1092 SSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG 1158 (3550)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC
Confidence 11 22222222222 11111 11 2345567777777888888999999999999998876
No 173
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=7.5 Score=49.20 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=98.0
Q ss_pred hccccccHhHHHHHHHHHHHHHHHhChhH-----HHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---c
Q 000369 902 GRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH---L 969 (1610)
Q Consensus 902 ~~L~Dsn~~v~~~al~~l~~la~~lg~~~-----~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~----~~---l 969 (1610)
.-|.-.|.+|+..|+.++=.+.+--|++. +.....=+--+.+.|.|.-+.||..|...+..+... ++ +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34567899999999998888888777664 344444455677889999999999998887665533 33 3
Q ss_pred hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 970 ~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
..++..|.+.+..+. ...+|..+++.|...+..-...+-+..+++.+-..|.|.+..||-|+...+..+-.
T Consensus 261 ~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 445556666665443 45789999999887665432222233344445568899999999999999877653
No 174
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.36 E-value=11 Score=37.53 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=58.8
Q ss_pred cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhcc
Q 000369 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1610)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld 489 (1610)
++...-|..++.-+..+++ .....+....+.++-.+..+++.. ++|+.|.+|-..|.+.++++.+.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3556889999999999988 444456566677777777777766 999999999999999999998888887654
No 175
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.34 E-value=30 Score=44.24 Aligned_cols=126 Identities=15% Similarity=0.205 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000369 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (1610)
Q Consensus 324 ~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~ 403 (1610)
.+-+.++..++.|..+.|+..|++-|-.+++.-. .|+.-+.-.|...+....+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4677888899999999999999999999887643 35566666677777777888899999999999985 3344
Q ss_pred hHHHHHHHhh---cCChHHHHHHHHHHHHHHHhCChhHHH--H-hhhhHHHHHHHhhcC
Q 000369 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (1610)
Q Consensus 404 vl~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~~~l~D 456 (1610)
.+..++..+. +....+|..++.||..-+...+...+. + .-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4444444443 556789999999998777655433222 1 124466777888888
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.76 E-value=36 Score=36.66 Aligned_cols=134 Identities=14% Similarity=0.202 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCC
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCL 399 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L-~~~f~~~~~~llp~Ll~klkdk-k~~V~~aa~~al~ai~~~~~~ 399 (1610)
..+.++..+.+.+.+.+..-+..++..++.++..- ..-|..+....+..++..+... ...+.+++..++..++.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~--- 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL--- 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---
Confidence 45666777777778777777888999998888876 4456677788888888887653 345566666666666654
Q ss_pred ChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 400 ~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+.++..-.|+.+ .+.++.+++.+.+.+++ ..+.+.+.+++..++..++.-
T Consensus 99 ------------~~~~p~l~Rei~----------------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 99 ------------IRGKPTLTREIA----------------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ------------hcCCCchHHHHh----------------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 122222222221 12346667777777776 777888999999999888743
Q ss_pred hHHHhhhhcc
Q 000369 480 PLERSIEKLD 489 (1610)
Q Consensus 480 ~~~~~l~~Ld 489 (1610)
+.||..++.
T Consensus 149 -~rp~~~ki~ 157 (165)
T PF08167_consen 149 -FRPFANKIE 157 (165)
T ss_pred -ccchHHHHH
Confidence 566665554
No 177
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=80.74 E-value=23 Score=45.65 Aligned_cols=106 Identities=10% Similarity=0.175 Sum_probs=62.4
Q ss_pred HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHH-HhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTA-LTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~----~ll~~l~~~-L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
.+...++|-|...+.|....+++.+...+.++++.+.+. .++|.|... +++. +..+|..++..+..+++.+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt--~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT--NLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc--chHHHHHHHHHHHHHHHHHH-
Confidence 344567777777777777777777777777777766532 234433322 1222 45567777777766664432
Q ss_pred CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
...+.+.+.|+..|+.-+++++--.-..++..++
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2234566667777776666666655555555443
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.71 E-value=18 Score=46.19 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCCh
Q 000369 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417 (1610)
Q Consensus 338 n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp 417 (1610)
+...-..|.+.|... -+.|......-+-.+++.+.|....||..+...|-.+++.....+..+.+.|..-|+...+
T Consensus 35 ~~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 355566676666555 4578889999999999999999999999998888888875335678888888889998888
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
.....+=+.|..++...++..+...+..+... ...+..||+.+.+.+..-+.-++.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 87777777777777776666664444444322 245678999988877654444443
No 179
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=80.70 E-value=14 Score=39.29 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhcc--------ccccH---hH------HHHHHH
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 917 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L--------~Dsn~---~v------~~~al~ 917 (1610)
+.+..|++.+=++|..|++.|..++.... ..+....|+.++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46778899999999999999999997532 4455556888888886643 11111 11 122233
Q ss_pred HHHHHHHHhChhHH-HhhhhHHHHHHHHhCCCc
Q 000369 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 949 (1610)
Q Consensus 918 ~l~~la~~lg~~~~-~~~~~llp~ll~~l~D~k 949 (1610)
++..++....+.+. ..+..++..+++.+.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 33333333222332 456677777777777666
No 180
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.72 E-value=7.5 Score=48.45 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=73.3
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000369 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~--~~~llp~L 371 (1610)
+.+.+|.-- .+|+.+++... +.-.+.+++|+|+|...|+.|...|+.+|+.+.+-.|..|... -+.|+..+
T Consensus 14 l~~pDWa~N----leIcD~IN~~~---~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 14 LAEPDWALN----LEICDLINSTE---GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred ccCccHHHH----HHHHHHHhcCc---cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 567888643 34666664322 2234899999999999999999999999999999999998843 45788888
Q ss_pred HHHhccC--cHHHHHHHHHHHHHHHHh
Q 000369 372 LEKLKEK--KPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 372 l~klkdk--k~~V~~aa~~al~ai~~~ 396 (1610)
+..++.+ -..|++-+...|++|...
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHH
Confidence 8888776 346777777777777654
No 181
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.56 E-value=58 Score=47.62 Aligned_cols=182 Identities=13% Similarity=0.170 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHHh-c---CCCCCCCCh-HHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000369 297 TKWSERKDAVAELTKLA-S---TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1610)
Q Consensus 297 ~kW~~R~eal~~L~~l~-~---~~ki~~~~~-~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~ 370 (1610)
.+=..+.-|++.|++++ + ...+..-.+ .++++-|..++. ..+..|....++|+..|...-+..+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 35557788888888765 2 222222122 467888888777 66778999999999999988888888888889988
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhhHHHHHHHh----hcC-ChHHHHHHHHHHHHHHHhCC------
Q 000369 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSV----KNK-VPLVRSLTLNWVTFCIETSS------ 435 (1610)
Q Consensus 371 Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l--~~vl~~l~~~l----~~K-np~vR~~~l~~L~~~l~~~~------ 435 (1610)
+--.++++.+.+++.+-+++..|+.. ...+. ...+.++..++ +.+ +..+=..++.+|..|.....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999888754 11111 23344443333 333 35555666666665522110
Q ss_pred -----------------------------hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 436 -----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 436 -----------------------------~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
......+-=.++-.+.+++.|..++||..|...|-.+....|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0000011112333445667899999999999999888888885
No 182
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.13 E-value=9.2 Score=36.84 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=61.5
Q ss_pred cHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHHH
Q 000369 1292 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1610)
Q Consensus 1292 v~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~ 1368 (1610)
.|.-.++-+.+.-+=+|+..|..|..+|++....+....+.+...-.++.|.|+=|-=+|+++|+++-...++.+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 34555566777778899999999999999988333233455788899999999999999999999998888875554
No 183
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.09 E-value=10 Score=51.20 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=86.2
Q ss_pred cHHHHHHHHhHHHHHHHHHhhcCCCCCH-HHHHh--------hhHHHHHhhCC---ChHHHHHHHHHHHHHHHhcCCccc
Q 000369 1224 NTTCLLKVLEFLPELFDTLRDEGYSLTE-SEAAV--------FLPCLVEKSGH---NIEKVREKMRELTKQIVNFYSATK 1291 (1610)
Q Consensus 1224 n~~v~~~~L~~l~~l~~~l~~~~y~l~~-~ea~~--------~lp~l~~K~Gd---~k~~vr~~v~~il~~~~~~~~~~k 1291 (1610)
-|-..++...+|-.+...|....+.-+. +||.. -+-.|..+.+. .+|.+.+.+..|+ -.-.
T Consensus 220 aTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if-------~sVF 292 (1048)
T KOG2011|consen 220 ATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIF-------DSVF 292 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhee
Confidence 3334445555555555555543333322 23332 45666666655 3444444444433 1112
Q ss_pred cHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcC--hHHHHH
Q 000369 1292 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG--EDIWRY 1369 (1610)
Q Consensus 1292 v~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G--~~v~~~ 1369 (1610)
|-+| +-=-|..|+.|+++||.-|+.|.-.= -..-.||+|...+.|++..||...+.+|--+|..-- +.|--|
T Consensus 293 VHRY-----RDV~~~IRaiCiqeLgiWi~~yP~~F-l~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF 366 (1048)
T KOG2011|consen 293 VHRY-----RDVDPDIRAICIQELGIWIKSYPEIF-LSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF 366 (1048)
T ss_pred eeec-----ccCchHHHHHHHHHHHHHHHhccHHH-hcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 2223 34457799999999999999986321 122357999999999999999999999999987621 234445
Q ss_pred hhcCCHHHHHHH
Q 000369 1370 VGKLTDAQKSML 1381 (1610)
Q Consensus 1370 ~g~l~~~~~~~l 1381 (1610)
...-++.-.+|.
T Consensus 367 tsRFK~RIVeMa 378 (1048)
T KOG2011|consen 367 TSRFKDRIVEMA 378 (1048)
T ss_pred HHHHHHHHHHHH
Confidence 555455444444
No 184
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.02 E-value=20 Score=46.11 Aligned_cols=279 Identities=18% Similarity=0.165 Sum_probs=160.2
Q ss_pred HHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 000369 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLG 784 (1610)
Q Consensus 705 ~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~ 784 (1610)
+|..+-...+-+ +.+.|...+....|+-||.+++..|. +...|... ..+.+.++.. +...+.--=++|.-.+|
T Consensus 402 AlGLIhA~hG~~-~~~yL~~~Lk~~~~e~v~hG~cLGlG--La~mGSa~---~eiYe~lKev-Ly~D~AvsGEAAgi~MG 474 (929)
T KOG2062|consen 402 ALGLIHANHGRG-ITDYLLQQLKTAENEVVRHGACLGLG--LAGMGSAN---EEIYEKLKEV-LYNDSAVSGEAAGIAMG 474 (929)
T ss_pred hhhccccCcCcc-HHHHHHHHHHhccchhhhhhhhhhcc--chhccccc---HHHHHHHHHH-HhccchhhhhHHHHhhh
Confidence 344444444444 66777777766678888887775442 11223222 3455666665 54444433334433333
Q ss_pred HHHhhhChhHHHhhhcccHHHHHH-----HHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHH
Q 000369 785 ALHKFVGPDIKGFLADVKPALLSA-----LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (1610)
Q Consensus 785 ~Ly~~~G~~l~~~l~~lkp~ll~~-----L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll 859 (1610)
-+- ++..++..... -+.+++|+ +|+++..-+. -.+-|.+ -.+.++
T Consensus 475 l~m----------lGt~~~eaiedm~~Ya~ETQHeki--------~RGl~vGiaL--------~~ygrqe----~Ad~lI 524 (929)
T KOG2062|consen 475 LLM----------LGTANQEAIEDMLTYAQETQHEKI--------IRGLAVGIAL--------VVYGRQE----DADPLI 524 (929)
T ss_pred hHh----------hCcCcHHHHHHHHHHhhhhhHHHH--------HHHHHHhHHH--------HHhhhhh----hhHHHH
Confidence 322 22223222221 12345554 2332210000 0000000 112344
Q ss_pred h-hcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc-cccccHhHHHHHHHHHHHHHHHhChhHHHhhhhH
Q 000369 860 K-SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1610)
Q Consensus 860 ~-~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~-L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~l 937 (1610)
+ .+.|++--.|..++-.+.---.+ +.+ ...+.-|... ++|.|-.|++.|...|+.++-. + ...
T Consensus 525 ~el~~dkdpilR~~Gm~t~alAy~G-----Tgn--nkair~lLh~aVsD~nDDVrRaAVialGFVl~~---d-----p~~ 589 (929)
T KOG2062|consen 525 KELLRDKDPILRYGGMYTLALAYVG-----TGN--NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---D-----PEQ 589 (929)
T ss_pred HHHhcCCchhhhhhhHHHHHHHHhc-----cCc--hhhHHHhhcccccccchHHHHHHHHHheeeEec---C-----hhh
Confidence 4 45788888999988776532221 112 2344444443 6899999999998877765432 1 245
Q ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC--CCchhhhH
Q 000369 938 LSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLL 1014 (1610)
Q Consensus 938 lp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~~~~~ll 1014 (1610)
+|.+++.|.+ -+++||-.+.-+|...+.-+|....+..|.+...++ +..+|++++-.++-.+-.... .+.+..+.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 6777777776 578999999999999888889888777766666654 567999999888876655543 24556666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Q 000369 1015 KPASIAMTDKSSDVRKAAEACIV 1037 (1610)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1610)
+-+.+.++|++.|+-..=-.+|.
T Consensus 668 k~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 668 KQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Confidence 77888889998876544333443
No 185
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.82 E-value=11 Score=44.91 Aligned_cols=100 Identities=17% Similarity=0.330 Sum_probs=72.7
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~llp 939 (1610)
....||..=....+.|. . .+..-.+.+.+|.+||+..+..|+..||.++..++..+|+.|..- .+.|..
T Consensus 21 nT~enW~~IlDvCD~v~----~-----~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVG----S-----DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhc----C-----CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34557876544444332 1 122237899999999999999999999999999999999998753 456666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCch
Q 000369 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 940 ~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
-|...+.+ ....|++.....+..|.+.+.-+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 67666664 44568888888888888766433
No 186
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.55 E-value=12 Score=40.35 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=70.8
Q ss_pred hhhccCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhc-------ch
Q 000369 292 EGVKATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-------FS 361 (1610)
Q Consensus 292 ~~l~s~kW~~R~eal~~L~~l~~-~-~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~-------f~ 361 (1610)
..+.++++..|-.|+.-+..++. + +.+....|...++.|.+.++ .....+...++.++..|...++.. ..
T Consensus 32 ~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t 111 (165)
T PF08167_consen 32 SLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT 111 (165)
T ss_pred HHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh
Confidence 34578889999999998887763 2 44444568889999999998 566778889999999988765431 23
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~ 396 (1610)
|.+..+++.++..+.+ ..+.+.+..++..++.+
T Consensus 112 p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 112 PNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5566666666665554 34444555555555543
No 187
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.51 E-value=9.7 Score=49.76 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChH
Q 000369 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (1610)
Q Consensus 340 ~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klk-dkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~ 418 (1610)
.|+..+.-+++.|+-.= +..++.++|.+..-+. ..-..||..+.-|+.-++.+.+.-.+..+|.|...|.+..+-
T Consensus 946 ~vra~~vvTlakmcLah----~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH----DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHH
Confidence 36666666776665432 3456667777777663 344466666666665555431233567889999999999999
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
||.+|+..|+++++.- +.+.-..+.=-++-.+-|+++++|.-|--+++.+.+.
T Consensus 1022 VRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999852 2222223344456678899999999999999988765
No 188
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.51 E-value=1.7e+02 Score=35.90 Aligned_cols=168 Identities=19% Similarity=0.136 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
++--+|.+|+.-++.++.-. +.... .-..++.+|.....+.+-+.+..++.++.+++-. .+.+--++.. +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 11111 1255788888888888888999999999888753 2222222222 3666777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----cCChh-hH-HHHHHHHHHHhccCCCC----
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GR-KDLFDWLSKQLTGLSGF---- 1007 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~-----~~~~~-~R-~~~l~~L~~~l~~~~~~---- 1007 (1610)
+.|....+.++...++-.++.+-. .+.-++.+...+.+. +.+.+ .| ..+...+...+..|+..
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777554577777777777765432 112233344333321 11221 24 33444566677888762
Q ss_pred CchhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000369 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1610)
.+...-++.++.+|.-++.++|+..-..+
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll 264 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLL 264 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12125667788888888988888876554
No 189
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.90 E-value=2.9e+02 Score=38.10 Aligned_cols=132 Identities=14% Similarity=0.008 Sum_probs=85.8
Q ss_pred HHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH-
Q 000369 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP- 974 (1610)
Q Consensus 900 L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~----l~~ll~- 974 (1610)
+..|..|....++..++.-|+.........|-. ..++--+=..|.|++..||..+..+|..++.+-. +..++.
T Consensus 292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 292 FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSR 369 (1048)
T ss_pred eeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 356778999999998888888877776655421 1122223346789999999999999999998832 222222
Q ss_pred ---HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHH
Q 000369 975 ---YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1610)
Q Consensus 975 ---~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1610)
-|.+.. +...++.+|..-+..+..... ...-...-+.+++.++-|.++.|+.+|...+-
T Consensus 370 FK~RIVeMa-drd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 370 FKDRIVEMA-DRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHHH-hhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 233333 222356667655544432211 11112456788999999999999999987664
No 190
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=8.9 Score=46.15 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=90.1
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChh-HHHhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSS 934 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~-~~~~~ 934 (1610)
.+++.+++-.|-+.|++|+..+.+++.. ++.+....+.+++.-+..++.|-...|+.....++..+.-.+++. ..+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788889999999999999999999985 344433346788888899999999999999999998887777665 46777
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
..+++-+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 7788888888888888888887777777777665
No 191
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=77.76 E-value=32 Score=39.86 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000369 297 TKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1610)
Q Consensus 297 ~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k 374 (1610)
++--.+..++-.+...+..+.-.. .++ ..+..+.+.+.+.+..|...|+.++..++..-. ....++..++.+++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHHHHHHHHHHH
Confidence 455566666666655432211000 011 234567778899999999999999998876432 334456666777665
Q ss_pred hcc--CcHHHHHHHHHHHHHHHHhc--CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhh-hhHHHH
Q 000369 375 LKE--KKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPI 449 (1610)
Q Consensus 375 lkd--kk~~V~~aa~~al~ai~~~~--~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~ 449 (1610)
... -+..++.++..+|..+--.. ..-+...+++++.-+...+..+|.+++..|..+-++- ......+ ......
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np--~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP--DMTRELLSAQVLSS 179 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH--HHHHHHHhccchhH
Confidence 433 36678877777777663220 1224566788888889999999999999888754432 1111111 234556
Q ss_pred HHHhhcCC-ChHHHHHHHHHHHHHHHHhCCh
Q 000369 450 CMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 450 l~~~l~D~-~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
++..++.. +.++--.+...+..+...++.+
T Consensus 180 ~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 180 FLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 66666654 5677666666676666666643
No 192
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=77.62 E-value=90 Score=39.33 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=107.6
Q ss_pred CcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHh----hcCC--CCCccHHHHHHHHHHHHHHHHHHcC
Q 000369 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV----CMLP--GWSEKNVQVQQQVIEVINYLAATAT 675 (1610)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l----~~~p--~~~DsN~~V~~~~l~~l~~l~~~~~ 675 (1610)
+=.++.+.|.+.+-+.|.+|++.|..- .-.+.++.+| +..- ...-.|...+...++++..|..+-.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TD--------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETD--------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC--------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 446788888889999999999988721 1223333333 2211 1225677788888888888887533
Q ss_pred CCchhhHHHHHHHHHhhhccc----h--------hhHHHHHHHHHHHhhhChhh------HHHHHHhhhhcC-CCHhHHH
Q 000369 676 KFPKKCVVLCLLGISERVADI----K--------TRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDH-KNPKVLS 736 (1610)
Q Consensus 676 ~~~~~~~~~il~~LveKlgd~----K--------~r~~a~~~L~~l~e~~~~~~------v~~~l~~~l~~~-knpKv~~ 736 (1610)
-|...++..++|.++..+-.. + +|+-|.+++..+|..++..+ |+..+.+.+.+. +.+-.+-
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 366777777777776554432 2 68999999999998876533 344444444444 5556677
Q ss_pred HHHHHHHHHHHHhCCCCC------ChHhHHHHHHhcCCCCC---cHHHHHHHHHHHHHHHhhhCh
Q 000369 737 EGILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 737 ~~l~~l~~~i~~fg~~~l------~~k~li~~l~~~gl~~~---n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
+++..|+.+ |...+ +++.....+..- +... |...+..|-++-+.|+++.++
T Consensus 360 Gai~gL~~l----g~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 360 GAIAGLSEL----GHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred hHHHHHHHh----hhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 777666544 33221 334444444432 3322 334566666666666665543
No 193
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=76.53 E-value=39 Score=35.38 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCChHhhHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHH-HHHhhcC---CChHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPI-CMECLND---GTPEVRDAAFSVLAA 471 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~-l~~~l~D---~~~~VR~aA~~al~~ 471 (1610)
..+..+.+..|..-++ ++||++-..++..|..|+.+++...... .-+.++.. +.+.+++ ....|++...+.+..
T Consensus 33 ~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 33 EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 3566677777777777 5899999999999999999998653221 22567776 7777764 456999999999999
Q ss_pred HHHHhCChh
Q 000369 472 IAKSVGMRP 480 (1610)
Q Consensus 472 l~~~~g~~~ 480 (1610)
....++.++
T Consensus 113 W~~~f~~~~ 121 (141)
T cd03565 113 WADAFRGSP 121 (141)
T ss_pred HHHHhCCCc
Confidence 998887643
No 194
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.31 E-value=16 Score=36.84 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=55.5
Q ss_pred ccCCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHHHhChhHHHhhh--hHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000369 886 KRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDA 962 (1610)
Q Consensus 886 ~~i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~~lg~~~~~~~~--~llp~ll~~l~D~k~~Vr~aa~~aL~~ 962 (1610)
.++..++ .+++..|.+.|.. .++.+..-||+-|+++++..... ...+. ..=..++..+.+.++.||..|..|+..
T Consensus 35 ~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4555555 7889999998843 46778888999999999976322 22222 233567788889999999999999988
Q ss_pred HHHh
Q 000369 963 WLAA 966 (1610)
Q Consensus 963 ~~~~ 966 (1610)
++.+
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 195
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=76.11 E-value=3.1e+02 Score=40.61 Aligned_cols=297 Identities=10% Similarity=0.083 Sum_probs=148.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhccccch----hH-HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC-C
Q 000369 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ----SV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F 677 (1610)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~----~~-~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~-~ 677 (1610)
+.++..-.+.|-..++-|+..|.+.....-+.+. .. ..+++-|...- -+-.+..|....++.+..++...+. +
T Consensus 1140 ~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im-~~s~~~eVrE~ILeCv~qmI~s~~~nI 1218 (1780)
T PLN03076 1140 DFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVM-RKSNAVEIRELIIRCVSQMVLSRVNNV 1218 (1780)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 4455544555666788888877665443111111 01 11222211000 0234456778888888877765433 2
Q ss_pred --chhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhCh------hhH----HHHHHhhhhcCCCHhHHHHHHHHHHHH
Q 000369 678 --PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP------GFI----FERLYKIMKDHKNPKVLSEGILWMVSA 745 (1610)
Q Consensus 678 --~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~------~~v----~~~l~~~l~~~knpKv~~~~l~~l~~~ 745 (1610)
+.+.+..++..... --+..+-..|.+++..++..+-. .-. +..+..+.....++++-..++..|..+
T Consensus 1219 kSGWktIF~VLs~aa~-d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAY-DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hcCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 33444444433321 01123445677777766543111 122 333334443344577766777777655
Q ss_pred HHHh-----CC---------------------CC----CC----hHhHHHH---HHhcCCCCCcHHHHHHHHHHHHHHHh
Q 000369 746 VEDF-----GV---------------------SH----LK----LKDLIDF---CKDTGLQSSAAATRNATIKLLGALHK 788 (1610)
Q Consensus 746 i~~f-----g~---------------------~~----l~----~k~li~~---l~~~gl~~~n~~VR~aA~~ll~~Ly~ 788 (1610)
...+ +. .. .+ ..-.++. +.++ ..+..++||..|+..|-.+..
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSEL-SFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHH
Confidence 3332 00 00 00 0112222 3344 457899999999998877777
Q ss_pred hhChhHHH-----hhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcC
Q 000369 789 FVGPDIKG-----FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1610)
Q Consensus 789 ~~G~~l~~-----~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~ 863 (1610)
..|..|.. .+..+--.+...+...++......+ +.+.+. .+ . ....
T Consensus 1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~--~~~~~~------------~~------------~---~~~e 1427 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEP--EGQGVD------------GD------------Q---GELD 1427 (1780)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc------------cc------------c---cchh
Confidence 77765432 1232222233333332221110000 000000 00 0 0112
Q ss_pred CCChh--HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 864 SPDWK--VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 864 d~~Wk--~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
.+.|- .-..|++.+-.+....-..+.+ .+.+++..|...+...|..+...++.|+..+...-|..|..-
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 23573 4456666666666542111222 346666677777788899999999999999999999888653
No 196
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.39 E-value=34 Score=41.62 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=75.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-cHhHH--HHHHHHHHHHHHHh----ChhHHHhh
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLV--MATLITLGAVASAM----GPAVEKSS 934 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~--~~al~~l~~la~~l----g~~~~~~~ 934 (1610)
+-+.+-..|.+|++.|+. .+. +.+|++.|...+.+. ..++. ...+..+-.++.+| .-.+++|+
T Consensus 187 ~~~~~~~~r~~aL~sL~t-----D~g-----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 187 LVGSNEEKRREALQSLRT-----DPG-----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HhCCCHHHHHHHHHHhcc-----CCC-----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 445677788888887752 122 456666666655433 11121 22344444455544 23478999
Q ss_pred hhHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHH----HHHHHhcCcCChhhHHHHHHHHH
Q 000369 935 KGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPY----VTTALTDAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 935 ~~llp~ll~~l~----------D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~----l~~~L~~~~~~~~~R~~~l~~L~ 998 (1610)
..++|.++.++- +..-.+|+.|...|..+++..+ ...+.|. +...|.+++.......+++..|.
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 999999999883 2333799999999999998876 2334443 33444443312223555555554
No 197
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=22 Score=44.13 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=89.1
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhhHHH
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k-lkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~ 407 (1610)
.+.+.+.|..+.++..+.-.++.---|-+. ..++..+|.- ..|.+..||.|+.-|+..++- ...+ .+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~---~D~~-~lv~ 589 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC---DDRD-LLVG 589 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEe---cCcc-hhhH
Confidence 344555687777777665555443333332 2355556655 689999999999888876643 2222 3333
Q ss_pred HHH-HhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 408 VKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 408 l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
..+ -.++-|+.||.+++-.|..+....+. +.....+-.++.|++.-||.+|+-+++.|.....
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 333 34588999999999999877665543 3445666778899999999999999887765544
No 198
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.67 E-value=64 Score=40.27 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=125.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhh
Q 000369 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~ 366 (1610)
+.+.+.+.+=.||.-...-|..+- +.+..-+.-...+...|...+. +.+...+.+.+..++.+.+|........ ...
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 334457899999987666666654 2211111111223334444444 5667778999999999999877555433 333
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh
Q 000369 367 LLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1610)
Q Consensus 367 llp~Ll~klkdkk~~-V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (1610)
+...++-..+-+.-. -......|+..++.+...-...++..|+...---|++=..--++.+..+++..++..+.+....
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334445455555433 3678889999998873333455677777766666666666778889999998888888888899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHH
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~ 500 (1610)
+...+.+|++..+-.|-+.|. ..+.+..+..++..-...-...|-..+
T Consensus 298 lf~~la~ci~S~h~qVAErAl-------~~w~n~~~~~li~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERAL-------YFWNNEYFLSLISQNSRVILPIIFPAL 345 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH-------GGGGSHHHHHHHHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH-------HHHCCHHHHHHHHhChHHHHHHHHHHH
Confidence 999999999999999966655 455666555555554444444444433
No 199
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=74.42 E-value=43 Score=44.35 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHh--hhcchhhhh--hHHHHHHHHhccCcH
Q 000369 306 VAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKP 380 (1610)
Q Consensus 306 l~~L~~l~~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L--~~~f~~~~~--~llp~Ll~klkdkk~ 380 (1610)
+.-++.|..++.-....+.+.+.-|.+.+. ..+. ...+.|+|.|++-- .-++..++. .++|.|.+.++....
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 445677775542111234455555555665 2233 45567777777743 335666664 689999999965432
Q ss_pred --HHHHHHHHHHHHHHHh-cCCC-h--HhhHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhCC-hhHHHHhhhhHHHHHH
Q 000369 381 --TVAESLTQTLQAMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICM 451 (1610)
Q Consensus 381 --~V~~aa~~al~ai~~~-~~~~-l--~~vl~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~ 451 (1610)
.+.-.+...+.++... .|-. + ..+++.+...|+.|. -..=.+++-.+.+++.+.. ...+... ..+...++
T Consensus 548 ~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~yli 626 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLI 626 (708)
T ss_pred ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHH
Confidence 3333333333333321 0100 1 245677777776665 3444455555555555422 1222222 45788999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 452 ECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 452 ~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
.++.|.+++||..|-.||..++.+=
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888763
No 200
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.06 E-value=28 Score=44.76 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=90.5
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHH
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l 408 (1610)
.+++.+.|.++.++..++-.++.--.|-+.. .-++.+++.- ..|.+..||.+|..|+..++- ..++.+...+
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~a---VsD~nDDVrRaAVialGFVl~---~dp~~~~s~V 594 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVA---VSDVNDDVRRAAVIALGFVLF---RDPEQLPSTV 594 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhccc---ccccchHHHHHHHHHheeeEe---cChhhchHHH
Confidence 3445566888888888766665433333321 2333333332 478999999999998887653 2333333333
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 409 KTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 409 ~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
.--.++-||.||.+++-.|..+...++- +..+..|-..+.|+..=||..|.-+++.|+-..-+
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 3334588999999999999987776543 34455566667899999999999999988865543
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.55 E-value=3.1e+02 Score=36.30 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=33.6
Q ss_pred hHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhh
Q 000369 758 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (1610)
Q Consensus 758 ~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~ 799 (1610)
..|..+... +++-|=.||..|++++..+-.+-|..++..+-
T Consensus 122 d~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 122 DNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred hhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 456666666 88889999999999999999999988776653
No 202
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=72.51 E-value=27 Score=34.64 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=56.7
Q ss_pred hhHHHHHHhcccccc--HhH--HHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000369 894 GELFGGLRGRLYDSN--KNL--VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 969 (1610)
Q Consensus 894 ~eL~~~L~~~L~Dsn--~~v--~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l 969 (1610)
-.++..+...+.|.. +.+ +..++..|+.|.+.+|+....+...+...+-..+. .+..|..+..|-..++.++..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 345555566666665 323 68899999999998887666666666666666665 556999999999999999875
Q ss_pred hhhHH
Q 000369 970 DKMVP 974 (1610)
Q Consensus 970 ~~ll~ 974 (1610)
+.+-|
T Consensus 88 ~~l~~ 92 (107)
T smart00802 88 EELGP 92 (107)
T ss_pred HHHHH
Confidence 55433
No 203
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.97 E-value=31 Score=43.89 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCch-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHH
Q 000369 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETI 1048 (1610)
Q Consensus 970 ~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~ 1048 (1610)
..++..+.+-|.+. +|-.|.-++..+...++-....+.- ..++.-+..|+.|++.-||+.|.+.+..+...-++..+
T Consensus 345 ~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~ 422 (1128)
T COG5098 345 NDLVGLLVERLSDT--YPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASE 422 (1128)
T ss_pred HHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhh
Confidence 34455666777765 6889999999988877654443332 34455578899999999999999999988766565443
No 204
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.89 E-value=19 Score=36.25 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=46.3
Q ss_pred hhHHHHHHHh-hcCChHHHHHHHHHHHHHHHhCChh--HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 403 DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 403 ~vl~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
.++..|...| ++.++.+-.-++.=+..++..+|.. .+.+ + ..-..++.+++++|++||..|..|+..+|..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-L-GAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-H-SHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-c-ChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555 3445666666777777777776543 2211 1 2345788999999999999999999988753
No 205
>PF05536 Neurochondrin: Neurochondrin
Probab=71.45 E-value=3.2e+02 Score=35.56 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=97.6
Q ss_pred hhhHHHHHHhcccccc-HhHHHHHHHHHHHHHHHhChhHHHhhh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--
Q 000369 893 TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 968 (1610)
Q Consensus 893 ~~eL~~~L~~~L~Dsn-~~v~~~al~~l~~la~~lg~~~~~~~~-~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-- 968 (1610)
+-+-++.|.+.+.... ..++..++.|+..++ +...+...+++ ..++.+.+.+.+ .+...+.|...+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 3455666666664433 478888899998888 44444444333 466777776666 56677777777777766554
Q ss_pred --------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-------CCchhhhHH-HHHHhcCCC-CHHHHHH
Q 000369 969 --------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-------FPDAAHLLK-PASIAMTDK-SSDVRKA 1031 (1610)
Q Consensus 969 --------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-------~~~~~~ll~-pl~~~L~D~-~~dVR~a 1031 (1610)
+..+++.+...+... .-..|.++|..|..++...+. .+.+...+. .+...|..+ .+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 224445555555532 234689999999999988741 122333332 355556444 7788999
Q ss_pred HHHHHHHHHHHhChHHH
Q 000369 1032 AEACIVEILRAGGQETI 1048 (1610)
Q Consensus 1032 A~~~l~~l~~~~G~~~~ 1048 (1610)
|-.+...++.+.|.+-+
T Consensus 252 al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHHhChHhh
Confidence 99999999999887643
No 206
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=70.19 E-value=50 Score=38.03 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=71.4
Q ss_pred hhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHH--HHHHhHHHHHHHHHhhcC
Q 000369 1169 KYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCL--LKVLEFLPELFDTLRDEG 1246 (1610)
Q Consensus 1169 ~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~--~~~L~~l~~l~~~l~~~~ 1246 (1610)
-+|.+-+..++-.+|-+.|-+|++.|... .. +..++-||.-.|.|.-++=+ ...|-.+-++.-.|-++-
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sLr~d-----sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESLRND-----SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 35665556666667888888999888743 22 44566777666666433211 122333334444566778
Q ss_pred CCCCHHHHHhhhHHHHH-----hhCC-ChH----HHHHHHHHHHHHHHhcCCcc
Q 000369 1247 YSLTESEAAVFLPCLVE-----KSGH-NIE----KVREKMRELTKQIVNFYSAT 1290 (1610)
Q Consensus 1247 y~l~~~ea~~~lp~l~~-----K~Gd-~k~----~vr~~v~~il~~~~~~~~~~ 1290 (1610)
|-|-|.....++|.++. |+|. +++ ++|.-.-.+++-++.-|+.+
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 88988888887776654 6665 666 47777777777777666543
No 207
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=70.10 E-value=26 Score=40.21 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=68.6
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhc---CC--hHHHHHHHHHHHHHHH
Q 000369 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN---KV--PLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 358 ~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~---Kn--p~vR~~~l~~L~~~l~ 432 (1610)
++.+-|..-++.+|+ .|.....++||.++|. + -.++.+++|..+..+.+ +| -..+..++-.+...+-
T Consensus 193 KELq~YF~kvisal~---dEs~~~~r~aAl~sLr----~-dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALL---DESDEQTRDAALESLR----N-DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc----c-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 344456666666664 4778888888877776 2 35677888877655532 22 1222233322222222
Q ss_pred hCChhHHHHhhhhHHHHHHHhh------cCCC----hHHHHHHHHHHHHHHHHhCC
Q 000369 433 TSSKAAVLKVHKDYVPICMECL------NDGT----PEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~~~l------~D~~----~~VR~aA~~al~~l~~~~g~ 478 (1610)
..+.-.+.+++.+++|.+..|+ ++++ -.+|+-|...++-+++.||.
T Consensus 265 ~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 265 KNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred cCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 2222123367788888887776 2222 35999999999999999885
No 208
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=70.05 E-value=36 Score=33.84 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=53.5
Q ss_pred hHHHHHHhcccc----ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000369 895 ELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 895 eL~~~L~~~L~D----sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.++..+...+.| ....-...+++.++.+.+..|+.+..+...+...+-..+... .+|..+..|-+.++.+++.+
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 344445555555 345566889999999999555555555555555554444444 89999999999999999865
Q ss_pred hhHHHH
Q 000369 971 KMVPYV 976 (1610)
Q Consensus 971 ~ll~~l 976 (1610)
.+-|.+
T Consensus 89 ~l~~ll 94 (107)
T PF08064_consen 89 DLGPLL 94 (107)
T ss_pred HHHHHH
Confidence 554433
No 209
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.36 E-value=52 Score=38.95 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=97.6
Q ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCCh-
Q 000369 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNL- 401 (1610)
Q Consensus 325 ~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~--~~~l- 401 (1610)
.+++.|...+.|...+|.-.|..+++.|+..-+-..+-.-..-+|.+++.+.+.--...-+-..|+..+.-+. ...+
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 5888999999999999988998888888875432222222345788999998877666667778887776551 0001
Q ss_pred -HhhHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCC--hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 402 -VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 402 -~~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~--~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
.-++..+..-|. ..|-.++-.+...|..+..... ...+. -.--+|.+..++-|+.-+||..-..|+..+.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~--esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR--ESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh--hcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 113344555565 3455577777777766554332 22221 1335788999999999999999888887665
No 210
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=68.78 E-value=66 Score=44.85 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHh
Q 000369 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (1610)
Q Consensus 1208 ~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~ 1285 (1610)
|.| ++.|+..|=+-.+++|...++.++.+++- ....|.+..+ .+|...+.|+||+...||+.-..+|+.+..
T Consensus 501 N~d-Ll~~~IdrCYss~~~va~gYF~vlaev~~--~~~~~~~~~~---~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 501 NPD-LLDWVIDRCYSSSPRVAEGYFTVLAEVFS--EREYPPCPFW---ELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred hHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHH--cCCCCCCCHH---HhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 345 78899888788899999888888877653 3334456554 488899999999999999999999988774
No 211
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.23 E-value=4.8e+02 Score=36.30 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=94.2
Q ss_pred hhhHHHHHHhcc----ccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000369 893 TGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 967 (1610)
Q Consensus 893 ~~eL~~~L~~~L----~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~ 967 (1610)
++.+.+.+.... --+|+.+..+|--+++.+...-. .|+..=+|.++..+. ...+.||..+.-++..++-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 345555444433 12346677777666665544322 345555666666665 677889999999998887666
Q ss_pred C--chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 968 H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 968 ~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
+ ++.+-+.+...|.+. ++.+|..++-.|..++-+-- --+.-.+.-...||.|.++.||.-|...+..+.
T Consensus 993 pnlie~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndm--iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDM--IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccccchhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5 688888999999977 79999999988887653310 011223444677999999999999995555443
No 212
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=67.87 E-value=48 Score=36.86 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=76.4
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHH
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l 408 (1610)
.+.+.++=....+-...+++++.+...+|....++...++..|-+.-.+..-..++.+..|+.+.+.. .+++.++..+
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a--mGpe~vL~~l 81 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA--MGPEQVLSIL 81 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH--CCHHHHHHHC
Confidence 33444432223346677899999999999998899988888888877777778889999999999986 8888888765
Q ss_pred HHHhh--cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHH
Q 000369 409 KTSVK--NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 451 (1610)
Q Consensus 409 ~~~l~--~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 451 (1610)
=-.+. ++...-|.-.+-.|...+.+.. +.-+...++|...
T Consensus 82 PLnl~~~~~~~~~raWLLPlLr~~i~~~~---L~fF~~~~lPla~ 123 (198)
T PF08161_consen 82 PLNLDNADDSQPGRAWLLPLLRDHIRNAS---LSFFVEEFLPLAR 123 (198)
T ss_pred CCCccCCCcCCcccchhHHHHHHhccCCC---hHHHHHHHHHHHH
Confidence 32222 3333444444444444443332 3223344555443
No 213
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.53 E-value=52 Score=39.99 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCC---cHHHHHHHHhHHHHHHHHHhhcCCCCC
Q 000369 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS---NTTCLLKVLEFLPELFDTLRDEGYSLT 1250 (1610)
Q Consensus 1174 ~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dt---n~~v~~~~L~~l~~l~~~l~~~~y~l~ 1250 (1610)
.+++.|.+.+...|..|++.|... ..+.+-+--+++|++....-+ |..++. ++-.++..|..+.+-.-
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~----~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQNLALLI----YLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcccHHHHH----HHHHHHHHHhcCCCCch
Confidence 666677778889999999998744 333332333444444432211 444444 44444445666666666
Q ss_pred HHHHHhhhHHHHHhh-----C-----CChHHHHHHHHHHHHHHHhcCCcc
Q 000369 1251 ESEAAVFLPCLVEKS-----G-----HNIEKVREKMRELTKQIVNFYSAT 1290 (1610)
Q Consensus 1251 ~~ea~~~lp~l~~K~-----G-----d~k~~vr~~v~~il~~~~~~~~~~ 1290 (1610)
+.....|+|.++..+ | +..-.+|+--..++..+|.-|+.+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 777888999888665 2 223356666666666666655443
No 214
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.51 E-value=35 Score=41.81 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc-----C---------chhh
Q 000369 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV-----H---------LDKM 972 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~---D~k~~Vr~aa~~aL~~~~~~~-----~---------l~~l 972 (1610)
..+..|++.+..+++.-+....+.+-.++..++..+. ..+..-.++|...+.+++... | +..+
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 4677889999999887666655555555666665332 233456677777777776443 1 1222
Q ss_pred HH-HHHHHHh-cCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000369 973 VP-YVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 973 l~-~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1610)
+. .+.+-|+ +....|-+|..++.++..+-...+ ...+..+++.++.+|.+.+.-|+..|+-|+
T Consensus 306 f~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 21 2334444 222268899999999987555443 334556666799999999999999998764
No 215
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.31 E-value=5.6 Score=32.20 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHH
Q 000369 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (1610)
Q Consensus 444 ~~l~p~l~~~l~D~~~~VR~aA~~al 469 (1610)
+.+...+.+.+.|+++.||++|.+.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998753
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.18 E-value=68 Score=41.05 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=76.5
Q ss_pred HHccCcCHHHHHHHHHHHHHHHHHhhh------cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hH
Q 000369 332 KLITDVNIAVAVEAIQAIGNLARGLRT------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LV 402 (1610)
Q Consensus 332 ~~l~D~n~~v~~~A~~~i~~La~~L~~------~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~---l~ 402 (1610)
+.+......++-.-+.+++.+...+.+ ++.+-+..++..+.++|.|..+.+|..+.+.+..++.-++.. =.
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ 385 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRH 385 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHH
Confidence 344444444444445555555554433 334457788999999999999999999988888888753222 24
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh
Q 000369 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 403 ~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
.+...+...+++++.-||..+...+..++-++|=
T Consensus 386 ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 386 EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 6778888899999999999999999999988763
No 217
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=66.57 E-value=47 Score=39.22 Aligned_cols=159 Identities=11% Similarity=0.155 Sum_probs=103.8
Q ss_pred cCCchhHHH----HHHHHHHH-HhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh----hhh-
Q 000369 21 LHKNWKVRN----EANIDLAA-LCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA----GRY- 90 (1610)
Q Consensus 21 ~~k~WK~R~----~ayeel~~-~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~----~~~- 90 (1610)
.-+.||.-- ..+..+.. ..+. ...+..|.-+.+.+-..+.|..+.....|+.+|..|+++..... .++
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~~~~--~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tG 162 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQLDR--PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTG 162 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhcCCc--chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcC
Confidence 567888754 34444443 1111 11122344456666788999999999999999999999876532 233
Q ss_pred hHHHHHHHHhhhcC---------CChhhHHHHHHHHHHHHhhh-----h-----h-hhHHHHHHHHhhc--C--ChhhHH
Q 000369 91 AKEVCDAIAAKCLT---------GRPKTVEKAQAVFMLWVELE-----A-----V-DVFLDVMEKAIKN--K--VAKAVV 146 (1610)
Q Consensus 91 ~~~v~~~lveK~l~---------~k~~~k~~a~~~ll~~~e~~-----~-----~-~~v~~~L~~~l~~--K--npKv~~ 146 (1610)
..+|+-..+.+|+. .-..+-..+..|++.++... . . +.+-+.++.++.+ + +++++.
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 34555555556654 12345567888888876541 1 1 2333446666542 3 699999
Q ss_pred HHHHHHHHHHHHhCCCCc-ChhhHHHhhhhhhCCCC
Q 000369 147 PAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQD 181 (1610)
Q Consensus 147 ~~l~~l~~~l~~fG~~~~-~~k~il~~l~~ll~~~d 181 (1610)
.-++.+..++...|...+ -++.+++.+...+++++
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998543 47788888888877664
No 218
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=65.83 E-value=73 Score=33.93 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=37.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHcc
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT 335 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~~~----ki~~~~~~~l~~~L~~~l~ 335 (1610)
+....+.+.|=++|.+|++.|..+++.+ .+....|..++.+|.+.+.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 3566789999999999999999988543 3555679999999988753
No 219
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=65.04 E-value=2.9e+02 Score=35.81 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHH---HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hhHHHHH
Q 000369 339 IAVAVEAIQAIGNLAR---GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVK 409 (1610)
Q Consensus 339 ~~v~~~A~~~i~~La~---~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~------~vl~~l~ 409 (1610)
..+++.||.|+-.+++ .|+..|.. ..+..+|+..+-+.-..|..++..++..++-.. .++. -.++.+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHH
Confidence 3468888888877665 67777652 234444555557788888888888888876431 2222 2456677
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHhCChhH-HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 410 TSVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 410 ~~l~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
..+.++.+.+|..++.+|...+=.+.... +..+-+--...+...++|++.+|.+.++..|..+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 77889999999999999988876655332 22223444556777889999999999998887654
No 220
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=63.82 E-value=69 Score=37.62 Aligned_cols=183 Identities=17% Similarity=0.155 Sum_probs=114.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhc---CCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~---~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~- 363 (1610)
.+...+-+.+-..-..|...++++++ +|-|.+---..++..+...+. .-+-..-.+|.=++..+|.|-...-.-.
T Consensus 75 ~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVv 154 (526)
T COG5064 75 QLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVV 154 (526)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEE
Confidence 56667778888888899999999774 454543111224445555553 4556677899999999999865431111
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------hHHHHHHHhhcCCh---HHHHHHHHHHHHHHHhC
Q 000369 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP---LVRSLTLNWVTFCIETS 434 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~------vl~~l~~~l~~Knp---~vR~~~l~~L~~~l~~~ 434 (1610)
--.-+|.++..+.+....|++.+.=||..+..- +....+ +++.++.-+.+..+ .+|-.|...-..|--+.
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD-S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD-SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCC-chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 124578888888999999999999888888754 222222 24555555543333 44444332222222222
Q ss_pred ChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 435 ~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
++..- ..+...+|.|.|++.-.+++| -..|+|++.-..
T Consensus 234 P~P~w-~~isqalpiL~KLiys~D~ev---lvDA~WAiSYls 271 (526)
T COG5064 234 PPPDW-SNISQALPILAKLIYSRDPEV---LVDACWAISYLS 271 (526)
T ss_pred CCCch-HHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHhc
Confidence 33222 234677999999999999998 456667666554
No 221
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.81 E-value=42 Score=33.38 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhcc
Q 000369 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1610)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld 489 (1610)
+...-|..++.-+..+++-.+ ..+...++.++-.|..+|+ .++.|..|.+|...+.+.+.++.+.++++..-
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~ 98 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIF 98 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334668888888888888544 4466667888888888887 66799999999999999999988888886543
No 222
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.47 E-value=2.8e+02 Score=32.01 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=65.2
Q ss_pred hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcCchh
Q 000369 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVHLDK 971 (1610)
Q Consensus 894 ~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k--~~Vr~aa~~aL~~~~~~~~l~~ 971 (1610)
.+-+.+|.+-+.|..+..+..+.-++|+|- .+.-+|.+.+.|.|.+ +-||..|..||.+++. +.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----e~ 251 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----ED 251 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----HH
Confidence 567888888888887777777777776663 2355788888888865 4699999999988754 56
Q ss_pred hHHHHHHHHhcCcCChhhHHHHHHHHH
Q 000369 972 MVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1610)
.++.|.+.+.+. .+.+|..+.-.|.
T Consensus 252 ~~~vL~e~~~D~--~~vv~esc~vald 276 (289)
T KOG0567|consen 252 CVEVLKEYLGDE--ERVVRESCEVALD 276 (289)
T ss_pred HHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 778888888765 4667766544443
No 223
>PF05536 Neurochondrin: Neurochondrin
Probab=63.45 E-value=1.1e+02 Score=39.85 Aligned_cols=173 Identities=15% Similarity=0.114 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccCcHH
Q 000369 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (1610)
Q Consensus 305 al~~L~~l~~~~ki~~-~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~llp~Ll~klkdkk~~ 381 (1610)
|+.-|..+...|.+.. .+.-+-++.|.+++. .+...++..+++|+..++. -..+.... ....+|.|.+.+.. .+.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 3444455555555543 345667777888876 3335789999999999983 33333332 33567777777766 556
Q ss_pred HHHHHHHHHHHHHHhcC--------CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh-----HHHHhhhhHHH
Q 000369 382 VAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (1610)
Q Consensus 382 V~~aa~~al~ai~~~~~--------~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-----~l~~~l~~l~p 448 (1610)
..+.+...+..++.... ..+..+++.|...+..-.-..|-+.+.+|..++...+.. .-...++.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 66777777776665411 112345566666555555567788899999999887411 11134556666
Q ss_pred HHHHhh-cCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 449 ~l~~~l-~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
.+...+ +-..+.-|+.|..+...+..++|.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 666665 5667789999999999999999964
No 224
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.99 E-value=4.8e+02 Score=34.45 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=158.7
Q ss_pred hHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Q 000369 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1610)
+++.+.+.+++. .--+|..+|+++.+.=..++...-..........|+.+.+-.||-.|.-||..++.+- .+.+.
T Consensus 461 iv~hv~P~f~s~--ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~---q~h~k 535 (970)
T COG5656 461 IVNHVIPAFRSN--YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE---QSHEK 535 (970)
T ss_pred HHHHhhHhhcCc--ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch---hhhHH
Confidence 345566777764 3468999999999874444443344566677889999999999999999999888653 23333
Q ss_pred hhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1052 LKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1052 l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
+...=|..+.++...-+-.- ..++
T Consensus 536 ~sahVp~tmekLLsLSn~fe--------------------------------------------------------iD~L 559 (970)
T COG5656 536 FSAHVPETMEKLLSLSNTFE--------------------------------------------------------IDPL 559 (970)
T ss_pred HHhhhhHHHHHHHHhccccc--------------------------------------------------------chHH
Confidence 33333333333322100000 0000
Q ss_pred cccCCCChHHHhhhhhcccccc---CC-ChhhHHHHHHHHHhhhhHHHHHhhccccH-----HHHHHHHHHHHHhcCCCh
Q 000369 1132 LNVKDSNKEDRERMVVRRFKFE---DP-RIEQIQELENDMMKYFREDLHRRLLSTDF-----KKQVDGLEMLQKALPSIR 1202 (1610)
Q Consensus 1132 ~~~~~~~k~~R~~~~~~k~~~~---~p-~~e~~e~L~~q~~~~~~~~l~~~l~s~d~-----~~r~~~l~~L~~~l~~~~ 1202 (1610)
--+..+ -+- .|. +| -.|.+-+|..|.... ..++++. ++|+ -..++|.+.|+.... -
T Consensus 560 S~vMe~--------fVe--~fseELspfa~eLa~~Lv~qFlki-aq~l~en--s~d~~s~vDDKqmaasGiL~T~~s--m 624 (970)
T COG5656 560 SMVMES--------FVE--YFSEELSPFAPELAGSLVRQFLKI-AQSLLEN--SSDTSSVVDDKQMAASGILRTIES--M 624 (970)
T ss_pred HHHHHH--------HHH--HhHHhhchhHHHHHHHHHHHHHHH-HHHHHcC--CccccccccHHHHHHHHHHHHHHH--H
Confidence 000000 000 000 00 012222222211111 0122222 2222 356888888875411 0
Q ss_pred hHHHHHHHHHHHHHHHhccCC-cHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCC-ChHHHH-HHHHHH
Q 000369 1203 KDIIEVLDILLRWFVLQFCKS-NTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVR-EKMREL 1279 (1610)
Q Consensus 1203 ~~~~~~lDlllk~~~~r~~dt-n~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd-~k~~vr-~~v~~i 1279 (1610)
-....|.-.|||++---+.+- ++-+.....||.++.++.+. +|.+.-.|...+.+.+.+++|+ +++..- .-+.+.
T Consensus 625 iLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dild--g~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~ 702 (970)
T COG5656 625 ILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILD--GYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEV 702 (970)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHH
Confidence 112235556888887777665 77777788888888888874 4667777888999999999999 554332 222233
Q ss_pred HHHHHhc--CC-----ccc-----cHHHHHhcccCCch--hhHHHHHHHHHHHHHhhCCCcccccch-HHHHHh---hhc
Q 000369 1280 TKQIVNF--YS-----ATK-----TLPYILEGLRSKNN--RTRIECVDLVGFLIDHHGAEISGQLKS-LQIVAS---LTA 1341 (1610)
Q Consensus 1280 l~~~~~~--~~-----~~k-----v~~~l~~gl~sKn~--r~r~e~l~~l~~li~~~G~~~~~~~k~-l~~ia~---~i~ 1341 (1610)
...+..+ |. -.. ++..+...+.+--. --+....+.+..++-.++-+-+++-.. +-.||. ...
T Consensus 703 ~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~ 782 (970)
T COG5656 703 ADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMI 782 (970)
T ss_pred HHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhcc
Confidence 2222222 21 112 22232233322222 223333344444444555433222222 222322 223
Q ss_pred CCchHHHHHHHHHHHHHHHh
Q 000369 1342 ERDGEIRKAALNTLATGYKI 1361 (1610)
Q Consensus 1342 drd~~VR~aAl~~l~~~y~~ 1361 (1610)
|.++--+-.|++.+......
T Consensus 783 dElg~~sv~aleliinnli~ 802 (970)
T COG5656 783 DELGPASVYALELIINNLIL 802 (970)
T ss_pred ccccchhhhHHHHHHHHHhc
Confidence 55666777788877665543
No 225
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=62.97 E-value=29 Score=35.13 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=62.0
Q ss_pred cccHHHHHhccc-CCchhhHHHHHHHHHHHHHhhCCCcccccch-HHHHHhhhcCCchHHHHHHHHHHHHHHHhc-C---
Q 000369 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (1610)
Q Consensus 1290 ~kv~~~l~~gl~-sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~-l~~ia~~i~drd~~VR~aAl~~l~~~y~~~-G--- 1363 (1610)
.+++|++.+|++ ++++-.|..|.--++.+..+..++. .-..+ ++.|+......+. .+.|+.||+.+|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999998 9999999999999999999888864 11233 3666666555544 678999999999877 3
Q ss_pred --hHHHHHhhcCCH
Q 000369 1364 --EDIWRYVGKLTD 1375 (1610)
Q Consensus 1364 --~~v~~~~g~l~~ 1375 (1610)
+.+++.+-.++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 246666666654
No 226
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=61.87 E-value=25 Score=40.80 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=67.0
Q ss_pred HHHHHHHHHh--cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhh----hhHHHHHHHhhcCCChH
Q 000369 387 TQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH----KDYVPICMECLNDGTPE 460 (1610)
Q Consensus 387 ~~al~ai~~~--~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l----~~l~p~l~~~l~D~~~~ 460 (1610)
..||..+++. +..-...+++++-.+|.+....||.-++.-+.++++.+....+...+ ..+.|.+..|+...+-+
T Consensus 64 VscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedde 143 (524)
T KOG4413|consen 64 VSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDE 143 (524)
T ss_pred HHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHH
Confidence 3455555543 11223567899999999999999999999999999998865544332 46889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000369 461 VRDAAFSVLAAIA 473 (1610)
Q Consensus 461 VR~aA~~al~~l~ 473 (1610)
|-++|.+.+..+.
T Consensus 144 VAkAAiesikria 156 (524)
T KOG4413|consen 144 VAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988886655
No 227
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=60.40 E-value=11 Score=30.54 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.3
Q ss_pred cchHHHHHhhhcCCchHHHHHHHHHH
Q 000369 1330 LKSLQIVASLTAERDGEIRKAALNTL 1355 (1610)
Q Consensus 1330 ~k~l~~ia~~i~drd~~VR~aAl~~l 1355 (1610)
...++.|...+.|.++.||.||+..|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34568999999999999999999864
No 228
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=58.70 E-value=15 Score=29.29 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.1
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 445 ~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
-.+|.|+++|.+.+++||+.|.-+++.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998765
No 229
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=57.66 E-value=88 Score=37.62 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=70.0
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH-HhhhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHh
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~~~l~-D~~~~VR~aA~~al~~l~~~~ 476 (1610)
..-.+++..|..-|.|++|.|-..++..+..|+.+|++..-. =+...+...+..+++ -+.+.|++.-+..+......+
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 345678888888899999999999999999999999864322 234667778888887 788999999999998888887
Q ss_pred CChhHHHhhhhcc
Q 000369 477 GMRPLERSIEKLD 489 (1610)
Q Consensus 477 g~~~~~~~l~~Ld 489 (1610)
.++.-..++..|-
T Consensus 121 K~Dp~lsLi~~l~ 133 (462)
T KOG2199|consen 121 KKDPSLSLISALY 133 (462)
T ss_pred ccCcchhHHHHHH
Confidence 7654344554443
No 230
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=57.22 E-value=2.5e+02 Score=33.76 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHhccCcHHHHHH-HHHHHHHHHHh----cCCChHhhHHHHHHH----hh---cCChHHHHHHHHHHHHHH
Q 000369 364 SRFLLPVLLEKLKEKKPTVAES-LTQTLQAMHKA----GCLNLVDVVEDVKTS----VK---NKVPLVRSLTLNWVTFCI 431 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~~V~~a-a~~al~ai~~~----~~~~l~~vl~~l~~~----l~---~Knp~vR~~~l~~L~~~l 431 (1610)
+..++.++|.-..+..+..|++ +-.++.+++.. ....+..+++.+... +. +.-|..|.+-..+|..+.
T Consensus 69 i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~ 148 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAIN 148 (319)
T ss_dssp HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHH
Confidence 3334444444455555555543 33344444433 123344555554332 21 345999999999999999
Q ss_pred HhCChhHHH---HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 432 ETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 432 ~~~~~~~l~---~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+.+....+. ...+.++..+.-++.+++.+|-+.|.+++..+..-+..
T Consensus 149 ~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 149 EHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 987654332 34688899999999999999999999999988877654
No 231
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=53.97 E-value=81 Score=34.07 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHh
Q 000369 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1610)
Q Consensus 868 k~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l 945 (1610)
..|+.|.+.+..++..+..++ +..+++..+..-|+| ...++..++.++..++..-...+.+.+..++.++-..+
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998542222 257888999999999 88999999999999987666566666666666665544
No 232
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=53.74 E-value=3e+02 Score=33.88 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc
Q 000369 299 WSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE 377 (1610)
Q Consensus 299 W~~R~eal~~L~~l~~~~ki~~~~~-~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd 377 (1610)
=.||..|+.-+++++..++- ...+ ..++++|..+..+.+-..+..++.++.+|+-.-..-+ -. -.-+..|++.+.|
T Consensus 82 ~~ER~QALkliR~~l~~~~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv-~~-~gG~~~L~~~l~d 158 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV-AE-CGGIRVLLRALID 158 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH-HH-cCCHHHHHHHHHh
Confidence 46899999999998743211 1112 4688888888888777788888888888775321111 11 1223556666666
Q ss_pred CcHHHHHHHHHHHHHHHHhcC--------CChHhhHHHHHHHh---hcCChH--HHHHHHHHHHHHHHhCChhH-HHHhh
Q 000369 378 KKPTVAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSV---KNKVPL--VRSLTLNWVTFCIETSSKAA-VLKVH 443 (1610)
Q Consensus 378 kk~~V~~aa~~al~ai~~~~~--------~~l~~vl~~l~~~l---~~Knp~--vR~~~l~~L~~~l~~~~~~~-l~~~l 443 (1610)
.-..+.+++..++-.++.+.. ..++.++-.+.+.- .+.+.. --+.+...+..++..|+.=- +...-
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 444477777777777776521 11222332232220 112221 23355666777788886311 00000
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000369 444 KDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 444 ~~l~p~l~~~l~D~~~~VR~aA~~al~~ 471 (1610)
..-+..++.+|.-+++++|+.-.+.+-.
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1346678888888999998887665543
No 233
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=53.50 E-value=45 Score=35.75 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000369 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1610)
Q Consensus 913 ~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~ 966 (1610)
..+++++-.+.+.+|..+-+|+..++|.++..+.......|+....-|..++..
T Consensus 105 ~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 105 TAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345666677788899999999999999999999877778888877777766554
No 234
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=52.03 E-value=1.3e+02 Score=36.27 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHhcCC---------ChHhhHH
Q 000369 343 VEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCL---------NLVDVVE 406 (1610)
Q Consensus 343 ~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd-------kk~~V~~aa~~al~ai~~~~~~---------~l~~vl~ 406 (1610)
.+.+.+++.+.+.++..+.+++..++..+++..-+ .-|..|..--.-+.++..+ |. .+..+++
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVID 168 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHH
Confidence 34566777777777777766666666665555422 3467777776667766665 21 2346777
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhCCh---hH----HHHhhhhHHHHHHHhhcCCC
Q 000369 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSK---AA----VLKVHKDYVPICMECLNDGT 458 (1610)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~---~~----l~~~l~~l~p~l~~~l~D~~ 458 (1610)
.+.-|++|.+..+-..+++.+..++.+... .. ...+.-.++..+...+-|++
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 888899999999999999999998887544 11 12333344444455555554
No 235
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.89 E-value=1.3e+02 Score=36.42 Aligned_cols=95 Identities=18% Similarity=0.035 Sum_probs=61.8
Q ss_pred hHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHH----hCChhHH
Q 000369 366 FLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TSSKAAV 439 (1610)
Q Consensus 366 ~llp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~-~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~----~~~~~~l 439 (1610)
.++..++..+ ||.+..+..++..++...+.+. ..-.+.+++.+..+|++|.+.+|..-+..+..++. .......
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~ 101 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA 101 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH
Confidence 3344444433 6888888888888888777652 23456788999999999999999998888888876 1111222
Q ss_pred HHhhhhHHHHHHHhhcCCChH
Q 000369 440 LKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 440 ~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
...++.+...+.++...+.+.
T Consensus 102 ~~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 102 EPFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHHhCCCCc
Confidence 234444444444455555443
No 236
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=1.3e+02 Score=39.50 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=102.3
Q ss_pred hhhhhhc-cCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 000369 289 GFWEGVK-ATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1610)
Q Consensus 289 ~f~~~l~-s~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~ 365 (1610)
.+.++++ ++=..+|++|+..|.++...-|+.- .....++..|..= -.+.-++..++.++--+... .++.
T Consensus 26 kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~--dd~~---- 97 (970)
T KOG0946|consen 26 KLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSH--DDSP---- 97 (970)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhc--Ccch----
Confidence 4666664 5778899999999988764322211 1122333333221 11333355554444333221 1110
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH---h
Q 000369 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK---V 442 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~---~ 442 (1610)
- -.++++ .+.+-.....+.++++ .+.+.-++..+.+.+-.||..+...+..++.+-+.. +.+ .
T Consensus 98 ----~---v~dds~-qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~ 163 (970)
T KOG0946|consen 98 ----E---VMDDST-QSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLV 163 (970)
T ss_pred ----h---hcccch-hhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 0 012333 3334444445555554 466777888999999999999999999999877653 222 2
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 443 l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
++.=+..++..|.|+...+|+.|.-.|..+.+--+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 46667788999999999999999888877665433
No 237
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.49 E-value=7.7e+02 Score=33.32 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHhhcCC-----hHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCcc--HHHHHHHHHHHHHHHHHHcCCC
Q 000369 605 DTVGQLKSAV-----WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK--NVQVQQQVIEVINYLAATATKF 677 (1610)
Q Consensus 605 ~l~~~L~s~~-----Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~Ds--N~~V~~~~l~~l~~l~~~~~~~ 677 (1610)
.+-+.+.+.+ |..=...+-.++.+...++..+ ...+.+.|...+..+=+ |.+....+.+.+..+....++.
T Consensus 466 ~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~ 543 (982)
T KOG2022|consen 466 TLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH 543 (982)
T ss_pred HHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC
Confidence 3344455555 6655555555555555543321 22344444333333333 7777777777777766554332
Q ss_pred chhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhh
Q 000369 678 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (1610)
Q Consensus 678 ~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~ 713 (1610)
.-.++..+|.|+.-++.+|....+...|..+|+-+
T Consensus 544 -P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C 578 (982)
T KOG2022|consen 544 -PMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETC 578 (982)
T ss_pred -CcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhh
Confidence 23456778888888888887777777777777654
No 238
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.23 E-value=83 Score=33.86 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=70.7
Q ss_pred ChhHHHHHHHHHHHHHHHccccCCCC--C--h-----hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 866 DWKVRLESIEAVNKILEEANKRIQPA--G--T-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~i~~~--~--~-----~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
++..|.=+++-+..+++.++..+... . + .+++..|.+.+...+..+...+++++..+...++..++...+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999998765555421 0 1 2344555554444558899999999999999999999999999
Q ss_pred HHHHHHHHhCC-Cc--HHHHHHHHHHHHHHHH
Q 000369 937 VLSDILKCLGD-NK--KHMRECTLTVLDAWLA 965 (1610)
Q Consensus 937 llp~ll~~l~D-~k--~~Vr~aa~~aL~~~~~ 965 (1610)
+++.++..+-+ +. ...|..+.+++..+.+
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 99999884433 22 2466666666666654
No 239
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.18 E-value=2.9e+02 Score=36.19 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=105.5
Q ss_pred ChH-HHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000369 322 DFT-EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1610)
Q Consensus 322 ~~~-~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~ 399 (1610)
+|. .++.+|..+++ -.+..+...-++-...|.+.+..+ .....++|.|...+++.-..+++.+...+-.+... .
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--I 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--c
Confidence 453 46667777776 444544444455555566666543 45778999999999999999999999998888876 2
Q ss_pred Ch----HhhHHHHHH-HhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000369 400 NL----VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1610)
Q Consensus 400 ~l----~~vl~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~ 474 (1610)
.+ ..|+|.|.. ++++-+..+|..++..+..+++...+... -+.+..+.+|+.-.+|.+--.....+..++-
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV----LDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 22 346677644 56788999999999999999987766544 2345667788888888887777777776664
Q ss_pred Hh
Q 000369 475 SV 476 (1610)
Q Consensus 475 ~~ 476 (1610)
..
T Consensus 497 ~~ 498 (700)
T KOG2137|consen 497 II 498 (700)
T ss_pred hc
Confidence 43
No 240
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.37 E-value=5.4e+02 Score=31.15 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=63.5
Q ss_pred hHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhC-hhHH
Q 000369 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG-PDIK 795 (1610)
Q Consensus 717 ~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G-~~l~ 795 (1610)
.+++.+.+.+.+-.|..+....+..|..-+..++. .+ .+.+++++.+ |+.+..+.||+.-...++.+....+ ....
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~-~~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-EL-PKKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CC-CHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 34555555555556666666666666666655533 22 3688899988 6999999999999999999876222 2244
Q ss_pred HhhhcccHHHHHHHHHHHh
Q 000369 796 GFLADVKPALLSALDAEYE 814 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~ 814 (1610)
.+...+-|.+.+.+++-+.
T Consensus 99 ~~~~~~~~~L~~~~~~~~~ 117 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASA 117 (339)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666677777777766543
No 241
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=49.78 E-value=1.5e+02 Score=34.21 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCccc-------cHHHHHhcc-cCCchhhHHHHHHHHHHHHHhhCCCc--ccccchHHHHHhhhcCCch
Q 000369 1276 MRELTKQIVNFYSATK-------TLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDG 1345 (1610)
Q Consensus 1276 v~~il~~~~~~~~~~k-------v~~~l~~gl-~sKn~r~r~e~l~~l~~li~~~G~~~--~~~~k~l~~ia~~i~drd~ 1345 (1610)
.-.+++-+|.++|+++ ....+++-+ .+..+.....||+-+.+++-.+..+. +.....+..|+.++.++..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 3478899999999985 445666767 56778999999999999988877665 3334457889999988665
Q ss_pred HHHHHHHHHHHHHHHhcCh
Q 000369 1346 EIRKAALNTLATGYKILGE 1364 (1610)
Q Consensus 1346 ~VR~aAl~~l~~~y~~~G~ 1364 (1610)
-|+-=+.|+--+|.+.++
T Consensus 191 -~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 191 -DRELRLKCIEFLYFYLMP 208 (257)
T ss_pred -cHHHhHHHHHHHHHHHcc
Confidence 333446666666765554
No 242
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.50 E-value=1.1e+03 Score=34.71 Aligned_cols=296 Identities=13% Similarity=0.135 Sum_probs=156.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHH
Q 000369 611 KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLG 688 (1610)
Q Consensus 611 ~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~--~~~~~~~~~il~~ 688 (1610)
.+-+-|.|+.-++.+.+-+.+.... +.-.+.+ |....+..+.++..+.+... .++..++...--.
T Consensus 813 p~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~------------~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~ 879 (2067)
T KOG1822|consen 813 PHVNNKIRLSILEHFPESIKQSKSA-RQQSVQV------------NAVTWQALLSALKYLAEFKGATSLGPEEVRSSALT 879 (2067)
T ss_pred cCccHHHHHHHHHHHHHHhhhhccc-hhHHHHH------------HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 3557788888887777665542111 1000111 22244566677777766544 3444444443333
Q ss_pred HHhh-h--ccchhhHHHHHHHHHHHhhhChhh----HHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCC--CChHhH
Q 000369 689 ISER-V--ADIKTRAHAMKCLTTFSEAVGPGF----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LKLKDL 759 (1610)
Q Consensus 689 LveK-l--gd~K~r~~a~~~L~~l~e~~~~~~----v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~--l~~k~l 759 (1610)
++.. + .++++|=.+.+++..++...+-.. +....++.+.+.+.|-.|.+-...++.+.+.-|.-+ -.+..-
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 3333 2 235677778888887777655333 455556666667888888887777777776655421 011222
Q ss_pred HHHHHhcCCCCC-cHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCC
Q 000369 760 IDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1610)
Q Consensus 760 i~~l~~~gl~~~-n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~ 838 (1610)
+..+..+ -+|+ .|.|++.++..+..+-.-.|+-++.|.+ ..+......+-.+ |+. +
T Consensus 960 v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve----~tlsl~~~lLls~----p~~-----~--------- 1016 (2067)
T KOG1822|consen 960 VSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMFRVLVE----PTLSLCLKLLLSV----PTS-----H--------- 1016 (2067)
T ss_pred HHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCceehhhHH----HHHHHHHHHcCCC----Ccc-----h---------
Confidence 2244444 4555 5699999999888887777776665543 2222322222111 110 0
Q ss_pred CCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHH--------HhccccccHh
Q 000369 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL--------RGRLYDSNKN 910 (1610)
Q Consensus 839 ~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L--------~~~L~Dsn~~ 910 (1610)
+++...+...+. +-+....++..-++.++++...+-...+ .=.+..++.-
T Consensus 1017 ---------~ev~q~~~R~~~-------------~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~l 1074 (2067)
T KOG1822|consen 1017 ---------VEVHQCYNRCFN-------------GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPL 1074 (2067)
T ss_pred ---------hhhhhhhccccc-------------cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccc
Confidence 000000000000 0001122232223455554311111111 1123455677
Q ss_pred HHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000369 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1610)
Q Consensus 911 v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~ 966 (1610)
+..+++.|++.+...-.+ .-....+++.+...+..+--..|++...|+..++..
T Consensus 1075 nqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1075 NQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 888899999988764333 345667888888877777777777777777766543
No 243
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.25 E-value=5.2e+02 Score=30.91 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=77.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhc-CCCCCC----CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHH--Hhhhcch
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~-~~ki~~----~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~--~L~~~f~ 361 (1610)
.|...+...+|.....+..-|..++. .+.... ..+..+++.|...+...+..+...|++|++.|.+ ..|..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 47777788899999999999998874 332222 1234455555554444455567888999999876 3455553
Q ss_pred hhhhhHHHHHHHHh----ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 362 ~~~~~llp~Ll~kl----kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
. ...++.++..+ ..++....+-.-.++-.++.- +.. +.+...+.+++ ....|..++..+.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~-----~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFE-----PEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTS-----HHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcC-----HHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 2 34444444444 334455555555555555543 222 22333333333 344555555555443
Q ss_pred HHHHhhhhHHHHHHHhhcCCChH
Q 000369 438 AVLKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 438 ~l~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
+...-.+-.+..+++-....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSSTT
T ss_pred ---hHHHHHHHHHHHHHhccHHH
Confidence 33344555666666555543
No 244
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.12 E-value=4.5e+02 Score=31.41 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=89.4
Q ss_pred CChHHHHHHHHHHHHHh-cCCCCCCCC-hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH---hhhcchhhhhhHHHHH
Q 000369 297 TKWSERKDAVAELTKLA-STKRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVL 371 (1610)
Q Consensus 297 ~kW~~R~eal~~L~~l~-~~~ki~~~~-~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~---L~~~f~~~~~~llp~L 371 (1610)
.+-..=+.+|+.|..+. +.|++.... ..=+++.|..-..|+... -.+++++..-+.+ -|..|-. -.++|-|
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt--~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVT--LLTLQWLQKACIMHEVNRQLFME--LKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHH--HHHHHHHHHHHHHhHHHHHHHHH--hhHHHHH
Confidence 33344456777777777 577776532 333444444433344332 3333444333221 1222211 1234444
Q ss_pred HHH-hccCcHHHHHHHHHHHHHHHHh-------cC-CChHh------hHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCC
Q 000369 372 LEK-LKEKKPTVAESLTQTLQAMHKA-------GC-LNLVD------VVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (1610)
Q Consensus 372 l~k-lkdkk~~V~~aa~~al~ai~~~-------~~-~~l~~------vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~ 435 (1610)
+.- .++.|..++.++..++.++.-- ++ .+..+ ++-.+.++++ --.|.+-...+..|.++.-+.
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~- 273 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD- 273 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-
Confidence 422 3566665666677777776532 01 01111 1222334443 122555555555554433211
Q ss_pred hhHHHHhhhhH-----HHHHHHhhcC-CChHHHHHHHHHHHHHHHHhCChhHH
Q 000369 436 KAAVLKVHKDY-----VPICMECLND-GTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1610)
Q Consensus 436 ~~~l~~~l~~l-----~p~l~~~l~D-~~~~VR~aA~~al~~l~~~~g~~~~~ 482 (1610)
.+.+.+ +..+..|+.| ....+|+.+..|+..+-...|.....
T Consensus 274 -----E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvK 321 (461)
T KOG4199|consen 274 -----EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVK 321 (461)
T ss_pred -----HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchH
Confidence 011111 3467889999 45689999999999999999987643
No 245
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=49.01 E-value=2.8e+02 Score=29.06 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh-----hH
Q 000369 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-----AA 438 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-----~~ 438 (1610)
++.-+..+|..+--+++.+..++.=|++. ..--+++.+.|++-|+..+-..|...+-|+..+.+.+.. ..
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~-----~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN-----RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 66777888999988888888777777764 123467889999999988999999999999886665422 12
Q ss_pred HHHhhhhHHHHHHHhhc-CCCh--HHHHHHHHHHHHHHH
Q 000369 439 VLKVHKDYVPICMECLN-DGTP--EVRDAAFSVLAAIAK 474 (1610)
Q Consensus 439 l~~~l~~l~p~l~~~l~-D~~~--~VR~aA~~al~~l~~ 474 (1610)
....++.-+|.++.+.- +.+. .-+..+++.|..+.+
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 22334444444444432 2222 334556666655543
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.75 E-value=71 Score=42.27 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=74.4
Q ss_pred HHHHHHHHHcc----CcCHHHHHHHHHHHHHHHHHhhhc----------chhhhhhHHHHHHHHhccCcHH-HHHHHHHH
Q 000369 325 EVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH----------FSGSSRFLLPVLLEKLKEKKPT-VAESLTQT 389 (1610)
Q Consensus 325 ~l~~~L~~~l~----D~n~~v~~~A~~~i~~La~~L~~~----------f~~~~~~llp~Ll~klkdkk~~-V~~aa~~a 389 (1610)
+++..+...++ ..+..+...|+-+++.|+...-.. .......+++.+...++..... =.+....+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 45555555544 345668888899999998865444 3344455555555555521110 01333344
Q ss_pred HHHHHHhcCCChHhhHHHHHHHhhcC---ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcC--CChHHHHH
Q 000369 390 LQAMHKAGCLNLVDVVEDVKTSVKNK---VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND--GTPEVRDA 464 (1610)
Q Consensus 390 l~ai~~~~~~~l~~vl~~l~~~l~~K---np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D--~~~~VR~a 464 (1610)
|.++-. .+...+++.+...+.++ ...+|..++..|.++...++ ..+.+.+...+.| .+++||-+
T Consensus 511 LkaLgN---~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 511 LKALGN---LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHH---HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HHHhhc---cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCCCCChhHHHH
Confidence 555542 34567788887777666 57899898888876644432 2334455555433 34689999
Q ss_pred HHHHH
Q 000369 465 AFSVL 469 (1610)
Q Consensus 465 A~~al 469 (1610)
|...|
T Consensus 580 A~~~l 584 (618)
T PF01347_consen 580 AYLIL 584 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86544
No 247
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=48.59 E-value=89 Score=33.65 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHhcCCChhHHH---------HHH-HHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHH
Q 000369 1183 DFKKQVDGLEMLQKALPSIRKDII---------EVL-DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1610)
Q Consensus 1183 d~~~r~~~l~~L~~~l~~~~~~~~---------~~l-Dlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ 1252 (1610)
+.+.+.=|++.|...++..+.... .-+ |-++..+..-....+++++..+|.++..++..+.. .-..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~----~Lk~ 110 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRS----HLKL 110 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 445566677777776665543322 211 45555565555566799999999999999988877 4456
Q ss_pred HHHhhhHHHHHhhCC
Q 000369 1253 EAAVFLPCLVEKSGH 1267 (1610)
Q Consensus 1253 ea~~~lp~l~~K~Gd 1267 (1610)
|...|++.++..+-+
T Consensus 111 ele~~l~~i~~~il~ 125 (168)
T PF12783_consen 111 ELEVFLSHIILRILE 125 (168)
T ss_pred HHHHHHHHHHHHHHc
Confidence 788888888876654
No 248
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=48.22 E-value=1.5e+02 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000369 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al 469 (1610)
..+...+++.+..++.-.+...+.. ..+++.+.+.+ .+++.|++|.+||
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 7888889998888888544444322 45888999999 4555599999986
No 249
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=47.24 E-value=1.4e+03 Score=35.13 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=83.7
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000369 294 VKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~l~~~~ki~~~~~-~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll 372 (1610)
+.+.+|..=.-+...+..++...+....++ ..-++.+..++++-.-.=..+|.-.+..++...-.-|-+|+..++..++
T Consensus 102 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~ 181 (2341)
T KOG0891|consen 102 LPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIF 181 (2341)
T ss_pred hccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHH
Confidence 455577766656666655543333333222 2223333333332222234666777788888777778899999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHH
Q 000369 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1610)
Q Consensus 373 ~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1610)
..+.+.++.++..+..+++++... ..++. +.-.+.|+.+|+..+.....
T Consensus 182 ~~~~~~~~~i~~~a~~al~~~~~~---~~~~~---------------~~~~~~~~~rcvd~~~~~l~ 230 (2341)
T KOG0891|consen 182 AALRDPKPAIRLQACSALHAVLSS---LAQRE---------------AKLKPQWYQRCVDEARHGLS 230 (2341)
T ss_pred HhccCCChhhhHHHHHHHHHHHhh---hhhcc---------------chhhhHHHHHHHHhcccccc
Confidence 999999999999999999988754 11111 25567888999988765433
No 250
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.98 E-value=9.7e+02 Score=32.87 Aligned_cols=445 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhc-------hhhh
Q 000369 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAAD-------ADAG 88 (1610)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~-------~~~~ 88 (1610)
+.+-+.|..=-.|.+=.+-+...+.. +....|..+.+.++.++...++..--.||-++..+++.-. ...+
T Consensus 94 Il~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~ 170 (1010)
T KOG1991|consen 94 ILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLG 170 (1010)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHH
Q ss_pred hhhHHHHHHHHhhhcC----CChhhHHHHHHHHHHHHhh------------hhhhhHHHHHHHHhhcCCh----------
Q 000369 89 RYAKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVEL------------EAVDVFLDVMEKAIKNKVA---------- 142 (1610)
Q Consensus 89 ~~~~~v~~~lveK~l~----~k~~~k~~a~~~ll~~~e~------------~~~~~v~~~L~~~l~~Knp---------- 142 (1610)
..+....|.|.+++-| +.-...+.-..+|-.|.-. +.....++-.+.-+..--|
T Consensus 171 ~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~ 250 (1010)
T KOG1991|consen 171 EAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPED 250 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhh
Q ss_pred -------hhHHHHHHHHHHHHHHhCCCCcCh-----------hhHHHhhhhhhCCCCHHHHH---HHHHHHHHHHHhhCC
Q 000369 143 -------KAVVPAIDVMFQALSEFGAKIIPP-----------KRILKMLPELFDHQDQNVRA---SSKGLTLELCRWIGK 201 (1610)
Q Consensus 143 -------Kv~~~~l~~l~~~l~~fG~~~~~~-----------k~il~~l~~ll~~~d~~VR~---~a~~l~~ely~~lG~ 201 (1610)
|..-=++..|+++.+.||..-... +.+.+.+...+=.--..-|+ -+-.++--+..|+..
T Consensus 251 R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~ 330 (1010)
T KOG1991|consen 251 RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQ 330 (1010)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q ss_pred chhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCc-cc
Q 000369 202 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP-VD 280 (1610)
Q Consensus 202 ~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~-vd 280 (1610)
........+-|+|...--++.-+ -+-.-+....++ -=+-|||+++-. -|
T Consensus 331 ~Vs~~~twkll~PHl~~ii~~vI------FPlmc~~d~dee------------------------lwe~DP~EYiR~~~D 380 (1010)
T KOG1991|consen 331 CVSHASTWKLLKPHLQVIIQDVI------FPLMCFNDEDEE------------------------LWEEDPYEYIRKKFD 380 (1010)
T ss_pred hccHHHHHHHhhhHHHHHHHHhh------hhhcCCCcccHH------------------------HHhcCHHHHHHhcCc
Q ss_pred ccCcCccchhhhhhccCChHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHcc----CcCHHHHHHHHHHHHHHHH
Q 000369 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLAR 354 (1610)
Q Consensus 281 Il~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~--~~~ki~~~~~~~l~~~L~~~l~----D~n~~v~~~A~~~i~~La~ 354 (1610)
|+ +++ ...+.+|+.-+..+. .++...++-.+-+++.|...-. ..|..-...|++.++.|+.
T Consensus 381 i~-----ed~--------~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~ 447 (1010)
T KOG1991|consen 381 IF-----EDG--------YSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS 447 (1010)
T ss_pred hh-----ccc--------CCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH
Q ss_pred Hhhhc--ch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh---cCCChHhhHHHHHHHhh-cCChHHHHHHHHHH
Q 000369 355 GLRTH--FS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWV 427 (1610)
Q Consensus 355 ~L~~~--f~-~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~---~~~~l~~vl~~l~~~l~-~Knp~vR~~~l~~L 427 (1610)
.|.+. |. ..-..+++.++--|..+--..|.-+...+..+..- ....+...++-...+|. ++.-.||.+++..|
T Consensus 448 ~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalAL 527 (1010)
T KOG1991|consen 448 ILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALAL 527 (1010)
T ss_pred HHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHH
Q ss_pred HHHHHhCChh-H-HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCC
Q 000369 428 TFCIETSSKA-A-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGG 505 (1610)
Q Consensus 428 ~~~l~~~~~~-~-l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~ 505 (1610)
..++.+.... . +..+++.++..+.+..++-.-+. -..++.+|...++++ +.||-..|-.......-.++..+.+
T Consensus 528 q~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~La~~F~k~l~~~~~ 603 (1010)
T KOG1991|consen 528 QSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQNLAETFLKVLQTSED 603 (1010)
T ss_pred HHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHhccCC
Q ss_pred CCCCC
Q 000369 506 DVATG 510 (1610)
Q Consensus 506 ~~~~~ 510 (1610)
..+..
T Consensus 604 ~~~~~ 608 (1010)
T KOG1991|consen 604 EDESD 608 (1010)
T ss_pred CCccc
No 251
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=45.08 E-value=69 Score=31.53 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.9
Q ss_pred hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 401 l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
.+.++-.|..+|.|=+|.||..++.||.-+++.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4556777889999999999999999999999987654
No 252
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=44.98 E-value=1.6e+02 Score=35.68 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=78.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcc---
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF--- 360 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~----~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f--- 360 (1610)
.|.+-+...+...=-+|...+..++ .++.+. ..+|...+..+.+++...|....+.+++.++.|-.. |..|
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm 246 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVM 246 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHH
Confidence 3555566777777788888888865 454443 367999999999999999999999999999998642 2222
Q ss_pred hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHH
Q 000369 361 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1610)
Q Consensus 361 ~~~~--~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l 408 (1610)
..|+ ..-+..++..++|+.++|+-.|-.....++.+ ....+.|...|
T Consensus 247 ~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~~~I~~iL 295 (335)
T PF08569_consen 247 TRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKPPPIVDIL 295 (335)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCChHHHHHH
Confidence 2442 35566677777777777777777777776666 33344444443
No 253
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.20 E-value=3.8e+02 Score=38.31 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=66.8
Q ss_pred cHHHHHhcc-c--CCchhhHHHHHHHHHHHHHhhCCCcc-cccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHH
Q 000369 1292 TLPYILEGL-R--SKNNRTRIECVDLVGFLIDHHGAEIS-GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (1610)
Q Consensus 1292 v~~~l~~gl-~--sKn~r~r~e~l~~l~~li~~~G~~~~-~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~ 1367 (1610)
++|++-+++ + +-+.|.|.-.+..+..++.+.|=++. ..+..+|.+|.+++|-|-.|-..+-..+=++-...|+.+|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 777777765 4 44558999999999999999998883 3356789999999999999999999988889999999999
Q ss_pred HHh
Q 000369 1368 RYV 1370 (1610)
Q Consensus 1368 ~~~ 1370 (1610)
.|+
T Consensus 1619 ~y~ 1621 (1621)
T KOG1837|consen 1619 SYL 1621 (1621)
T ss_pred hcC
Confidence 874
No 254
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=43.98 E-value=97 Score=41.22 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=55.6
Q ss_pred HHHHHHhcCCc--cccHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCcc--cccchHHHHHhhhc-CCchHHHHHHHH
Q 000369 1279 LTKQIVNFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS--GQLKSLQIVASLTA-ERDGEIRKAALN 1353 (1610)
Q Consensus 1279 il~~~~~~~~~--~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~--~~~k~l~~ia~~i~-drd~~VR~aAl~ 1353 (1610)
+++.++.+=.| ..+|..|=+-+. ++..|.++|..++++|.+.+.-.. ...-.++.|-+|+- |.+..|=.+||.
T Consensus 56 ~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 56 ALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 33444444433 334444334343 457999999999999999877652 22234566666655 899999999999
Q ss_pred HHHHHHHhcC
Q 000369 1354 TLATGYKILG 1363 (1610)
Q Consensus 1354 ~l~~~y~~~G 1363 (1610)
||+.+-=++-
T Consensus 134 ~LimlLP~ip 143 (668)
T PF04388_consen 134 VLIMLLPHIP 143 (668)
T ss_pred HHHHHhcccc
Confidence 9998766554
No 255
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.93 E-value=1.6e+02 Score=39.09 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcccc---------CCCCChhhHHHHHHhccc----cccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 869 VRLESIEAVNKILEEANKR---------IQPAGTGELFGGLRGRLY----DSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~---------i~~~~~~eL~~~L~~~L~----Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
.|..++-.+..++...-.. -......+++..|...|. ..+..-+..+|++||.+.. .
T Consensus 451 l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~ 520 (618)
T PF01347_consen 451 LRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------P 520 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------G
T ss_pred HHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------c
Confidence 5667777777777642111 011123444555544443 3344556667777766531 2
Q ss_pred hHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhh
Q 000369 936 GVLSDILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1610)
Q Consensus 936 ~llp~ll~~l~D~---k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (1610)
..++.+...+.+. ...+|-+|..||..+...+ .+.+.+.+...+.+...++++|..++..|.+. .|. ..
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~----~~ 592 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDPEVRIAAYLILMRC---NPS----PS 592 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HH
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCC----HH
Confidence 3455555545444 6789999999998775544 46777888888887655789999998777642 121 34
Q ss_pred hHHHHHHhc-CCCCHHHHHHHHHHH
Q 000369 1013 LLKPASIAM-TDKSSDVRKAAEACI 1036 (1610)
Q Consensus 1013 ll~pl~~~L-~D~~~dVR~aA~~~l 1036 (1610)
.+..+...+ .|++..|+......|
T Consensus 593 ~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 593 VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 555555555 788999988776544
No 256
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.45 E-value=2.7e+02 Score=35.12 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=108.7
Q ss_pred CCCcccccccc---chHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-----ccccHhHHHHH
Q 000369 844 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMAT 915 (1610)
Q Consensus 844 ~~pr~dIs~~l---~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L-----~Dsn~~v~~~a 915 (1610)
.+++.||.+.+ ...|+..+....-.+-.--+.++-.++.-....+.|. ...++..|...+ +.+|+....-.
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 35556665433 2345554432222333334555655555433444443 355555555444 56788888888
Q ss_pred HHHHHHHHHHhChh----HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCcCChh
Q 000369 916 LITLGAVASAMGPA----VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAE 988 (1610)
Q Consensus 916 l~~l~~la~~lg~~----~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~---l~~ll~~l~~~L~~~~~~~~ 988 (1610)
.++++.+.+..... +..+-..++|.+...|...-....-.+.+-+..+.+... +....-.|...|-++. -|+
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~-lWe 171 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA-LWE 171 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG-GGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc-hhc
Confidence 99999988865432 235667788888888887776677777777777777654 2111112222222221 122
Q ss_pred hH---HHHHHHHHHHhccCCC----CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 989 GR---KDLFDWLSKQLTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 989 ~R---~~~l~~L~~~l~~~~~----~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
.| -.+...|..++.+.+. ...+..++--+-+++..+..| ..|...|..++.+++.+.+.++++.+
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I 243 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQI 243 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHH
T ss_pred cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 22 2222233333333322 122233333344577766655 66899999999999999888886443
No 257
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.30 E-value=1.8e+02 Score=39.52 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=72.3
Q ss_pred hhHHHHHHhccccc-cHhHHHHHHHHHHHHHHHhChh-HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc----
Q 000369 894 GELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV---- 967 (1610)
Q Consensus 894 ~eL~~~L~~~L~Ds-n~~v~~~al~~l~~la~~lg~~-~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~---- 967 (1610)
++++..-...|+|. .+-+++-.|-||+.|-...-.. +.-.-..-.-.++..|.|+-+.||.||.-||.+++.+.
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f 677 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF 677 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence 56777666778884 6888898999998886543221 11111123356777889999999999999999999863
Q ss_pred ------------------CchhhHH----HHHHHHhcCcCChhhHHHHHHHHHHHhcc
Q 000369 968 ------------------HLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1610)
Q Consensus 968 ------------------~l~~ll~----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1610)
..+..++ .++..+++. +|.+|.++..+|.+....
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg--splvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG--SPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc--chHHHHHHHHHHHHHHHh
Confidence 1122222 233444554 688999988888876543
No 258
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=40.81 E-value=4.1e+02 Score=32.26 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=82.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--------cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC-hhHHHH
Q 000369 371 LLEKLKEKKPTVAESLTQTLQAMHKA--------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLK 441 (1610)
Q Consensus 371 Ll~klkdkk~~V~~aa~~al~ai~~~--------~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~ 441 (1610)
+++......=.|...+-.++..++.. ...+.+.++..+...+.+.|.-+|.+++.+|..++..-. -....+
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 34444445555555555555554432 013456777777788899999999999999999986433 233335
Q ss_pred hh--hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcC
Q 000369 442 VH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1610)
Q Consensus 442 ~l--~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (1610)
++ ++-+..++.+|.|....+|-.|+..+-.|..- ++++ .+ +..+=-.-|.++-+++.+-
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~-~~-I~~iL~~Nr~kLl~fl~~f 309 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKP-PP-IVDILIKNREKLLRFLKDF 309 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-B-HH-HHHHHHHTHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCC-hH-HHHHHHHHHHHHHHHHHhC
Confidence 44 56788999999999999999999888766644 4444 23 3333334466777787664
No 259
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=40.38 E-value=6.2e+02 Score=29.04 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=46.6
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh
Q 000369 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1610)
Q Consensus 334 l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~ 413 (1610)
++|.++.|+..++.|...+- |.+|..+ ....-.+...+.+ ..+-..|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy---------------~~~~~~i--~~~~~~~~~W~~~-----------~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY---------------PLVFRWI--CVNPSDEQLWESM-----------NELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH---------------HHHHHHH--S--HHHHHHHHHH-----------HHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHHH---------------HHHHHHH--cCCchHHHHHHHH-----------HHHHHHHHHHhc
Confidence 56888999999988887653 3333333 1111122222222 334456777788
Q ss_pred cCChHHHHHHHHHHHHHHHhC
Q 000369 414 NKVPLVRSLTLNWVTFCIETS 434 (1610)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~ 434 (1610)
+.||.+|..++.|+.+++...
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999998654
No 260
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.58 E-value=3e+02 Score=36.05 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=74.9
Q ss_pred hhHHHHHHhcccc----ccHhHHHHHHHHHHHHHHHhChhH----HHhhhhHHHHHHHHhC----CCcHHHHHHHHHHHH
Q 000369 894 GELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAV----EKSSKGVLSDILKCLG----DNKKHMRECTLTVLD 961 (1610)
Q Consensus 894 ~eL~~~L~~~L~D----sn~~v~~~al~~l~~la~~lg~~~----~~~~~~llp~ll~~l~----D~k~~Vr~aa~~aL~ 961 (1610)
.+++..|...+.+ .+..++..|+-.++.++......- ......+++.+...|. +.....+.....+|.
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5566666555543 355677788888888876332111 1112344455444433 333334444444443
Q ss_pred HHHHhcCchhhHHHHHHHHh-cCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000369 962 AWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 962 ~~~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1610)
+.|....++.+...+. +...++.+|..++..|.+.....+. ...+.+.+++.- .+.+++||-+|.-.|
T Consensus 472 ----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--~v~~~l~~i~~n-~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 ----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--KVQEVLLPIYLN-RAEPPEVRMAAVLVL 540 (574)
T ss_pred ----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHcC-CCCChHHHHHHHHHH
Confidence 4566666666666665 3333567899988888765443332 223333343311 245889999987654
No 261
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=39.02 E-value=4.8e+02 Score=34.92 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=77.3
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhh-
Q 000369 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK- 444 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~- 444 (1610)
.++..|++.+-.++..- +++.++......-..++..|-..+. ++.-|..++.+|..++...+.- +.+++.
T Consensus 39 ~l~~~l~~y~~~t~s~~------~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQR------ALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPW-LYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCcHH------HHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCch-HHHHhcC
Confidence 56777788776665422 2333333211122567777766665 4689999999999999876643 333332
Q ss_pred hHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccH
Q 000369 445 DYVPICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1610)
Q Consensus 445 ~l~p~l~~~l-~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~ 490 (1610)
.+++.|.+|| -|.+..|=..|.-+|..+.-++... +.+++..|-.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~Lf~ 155 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 4666677765 8999999999999999988888754 5677776554
No 262
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=38.97 E-value=2.7e+02 Score=34.05 Aligned_cols=183 Identities=10% Similarity=0.078 Sum_probs=113.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCC--CCchhhhhh---hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhch--hhh
Q 000369 16 WEDRLLHKNWKVRNEANIDLAALCDSITD--PKDNRIREL---GPLFKKTVADSNAPVQDKALDALIAYLKAADA--DAG 88 (1610)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~~--~~~~~~~~~---~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~--~~~ 88 (1610)
+++..-.+.|-.|..+.-.+.+.|...+- .....|+.. ...++..+.|--+.+-.+.++.+..++...=. .+.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 46677789999999999999999976432 122234322 34556677777777777777766655544311 233
Q ss_pred hh-----hH-HHHHHHHhhhcCCChhhHH---HHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHH
Q 000369 89 RY-----AK-EVCDAIAAKCLTGRPKTVE---KAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSE 158 (1610)
Q Consensus 89 ~~-----~~-~v~~~lveK~l~~k~~~k~---~a~~~ll~~~e~~~~~~v~~~L~~~l-~~KnpKv~~~~l~~l~~~l~~ 158 (1610)
.+ .. .+|..+.-. .+.-..++. .-++.+-.|.|...-+.|-+.|..-+ .+|.|.+...-...|...++.
T Consensus 478 kledahclehhfctlllpn-gdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkd 556 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPN-GDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKD 556 (666)
T ss_pred hhhHHHHHHHhhhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHh
Confidence 22 11 123222222 111233333 33566667776655555666665554 488999888888888888888
Q ss_pred hCCC--CcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhh
Q 000369 159 FGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (1610)
Q Consensus 159 fG~~--~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~l 199 (1610)
.|.. .+..--..++-++...|.--.+|..|...++.+|+--
T Consensus 557 lgkGragfiediakkfgVpaeehglndkreaafaiicdmtrdh 599 (666)
T KOG4825|consen 557 LGKGRAGFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDH 599 (666)
T ss_pred cCCCccchhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccH
Confidence 7762 2322333444556667777889999999999998643
No 263
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=38.68 E-value=7.6e+02 Score=29.56 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=72.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCc-hhh---HHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhc-
Q 000369 947 DNKKHMRECTLTVLDAWLAAVHL-DKM---VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM- 1021 (1610)
Q Consensus 947 D~k~~Vr~aa~~aL~~~~~~~~l-~~l---l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L- 1021 (1610)
|+..++|-..-..+-+++..+++ ..+ +..+-.-+++-+.+.....+++..+.+.+............+..++..+
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 44445888888888888888873 222 3355566665444556678889999988877765434445555566655
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh
Q 000369 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1610)
Q Consensus 1022 ~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1610)
+|--...|..|.+|+.....--.. .+-.++-+|+|-
T Consensus 197 ~dnas~AredA~rcV~~av~dP~~-F~fD~Ll~L~pV 232 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKDPKI-FLFDHLLTLPPV 232 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcCCce-eccchhccCchH
Confidence 454588999999999877754332 233345556554
No 264
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.48 E-value=1.2e+02 Score=41.14 Aligned_cols=67 Identities=21% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHhhcC-ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 410 TSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 410 ~~l~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
..|.+. .|-.|+=++..|.++.+....+.....-..--..+...|.|+-++||.||.-||++|....
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 344443 5888988888888888877766554333344567888999999999999999999999863
No 265
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.42 E-value=3.9e+02 Score=39.00 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=71.8
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHH-HHHHHHHHHHh-cCCChHhhH----HH
Q 000369 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES-LTQTLQAMHKA-GCLNLVDVV----ED 407 (1610)
Q Consensus 334 l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~a-a~~al~ai~~~-~~~~l~~vl----~~ 407 (1610)
+...|+..+-.+..+++.|+...+. .+++-.+....++++++.+..|+.. -.-|+..+.+| +.....+.+ ..
T Consensus 885 l~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 885 LINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 3466777777788888888887665 3788899999999999988877654 45566667777 222223333 33
Q ss_pred HHHHhh-cCChHHHHHHHHHHHHHHHhCChh
Q 000369 408 VKTSVK-NKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 408 l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
++.-.+ +..|.|+.-++..+...+....+.
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~ 993 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPM 993 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCce
Confidence 444334 566799999999999888876553
No 266
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.09 E-value=1.8e+02 Score=29.24 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHH
Q 000369 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1610)
Q Consensus 370 ~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1610)
.+|+.+..++..|.....=|++..-. -..+++.+...+..-.+.-|...+=.+..++.++.......+...+.|.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~-----a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~ 78 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASH-----AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPV 78 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 34555666677776666666654432 2456777766666555566666665555666655322111122333333
Q ss_pred ----HHHhhcCCChHHHHHHHHHHHHHHH
Q 000369 450 ----CMECLNDGTPEVRDAAFSVLAAIAK 474 (1610)
Q Consensus 450 ----l~~~l~D~~~~VR~aA~~al~~l~~ 474 (1610)
+....+..++++|+...+.+...-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 79 FQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 3333444456677776666654443
No 267
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=38.00 E-value=6.4e+02 Score=28.51 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=39.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHh
Q 000369 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1610)
Q Consensus 455 ~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~ 501 (1610)
..=.++||++=.-++-.+..+.++..+.-+...||..-|.-.++..+
T Consensus 167 ~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 167 YTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 44578999999999999999999888877888899988877776654
No 268
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=37.95 E-value=3.1e+02 Score=27.25 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCC
Q 000369 378 KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1610)
Q Consensus 378 kk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~ 457 (1610)
+++.|.....-|+...- .-..++..+...++...|.-|...+=.+..++.++....-......+.+.+..+....
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~ 91 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV 91 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC
Confidence 55555544444444332 1245666666777777777787777777777777654322222233466667777777
Q ss_pred ChHHHHHHHHHHH
Q 000369 458 TPEVRDAAFSVLA 470 (1610)
Q Consensus 458 ~~~VR~aA~~al~ 470 (1610)
++.+|..-.+.+.
T Consensus 92 ~~~~r~kl~rl~~ 104 (114)
T cd03562 92 DEKTRKKLERLLN 104 (114)
T ss_pred CHHHHHHHHHHHH
Confidence 8888766665554
No 269
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=37.66 E-value=47 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=24.3
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1013 LLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
.+++++.+|.+.+.+||+.|.-+|..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677999999999999999999988764
No 270
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=37.60 E-value=4.2e+02 Score=33.38 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=89.3
Q ss_pred hhHHHHHHhccc--c--ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHh-----CCCcHHHHHHHHHHHHHHH
Q 000369 894 GELFGGLRGRLY--D--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-----GDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 894 ~eL~~~L~~~L~--D--sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l-----~D~k~~Vr~aa~~aL~~~~ 964 (1610)
.+|+..|...+. + .|.-+ .+|+-++...++....+++..+++.+...+ +-+|+.--...-+++..++
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeyl----Mk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~li 100 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYL----MKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALI 100 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHH----HHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccchHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Confidence 556666655552 2 23333 455556666667777777777777776655 2477888888999999998
Q ss_pred HhcC---------c-hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCC--C-CCchhhhHHHHHH-hcCCCCHHHHH
Q 000369 965 AAVH---------L-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS--G-FPDAAHLLKPASI-AMTDKSSDVRK 1030 (1610)
Q Consensus 965 ~~~~---------l-~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~--~-~~~~~~ll~pl~~-~L~D~~~dVR~ 1030 (1610)
+.+. + +.++|.+...|+++ ..+-=-+++..|+..++..+ . +.....++.|++. .+.++.+.|..
T Consensus 101 r~~~~~~~~~v~~~E~~L~P~f~~ILq~d--V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPa 178 (435)
T PF03378_consen 101 RFVCEADPEAVSQFEEALFPPFQEILQQD--VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPA 178 (435)
T ss_dssp HHS-GGGHH---HHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHH
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCc
Confidence 8753 1 34678888888864 23445778888888887776 2 2356778888654 66777777743
Q ss_pred HHHHHHHHHHHHhC
Q 000369 1031 AAEACIVEILRAGG 1044 (1610)
Q Consensus 1031 aA~~~l~~l~~~~G 1044 (1610)
.. ..|.+++.+-+
T Consensus 179 lv-rLL~a~i~k~~ 191 (435)
T PF03378_consen 179 LV-RLLQAYIKKDP 191 (435)
T ss_dssp HH-HHHHHHHHHHG
T ss_pred HH-HHHHHHHHhCc
Confidence 33 35555555443
No 271
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.33 E-value=6.8e+02 Score=28.59 Aligned_cols=118 Identities=10% Similarity=0.115 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh-cC
Q 000369 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NK 415 (1610)
Q Consensus 338 n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~-~K 415 (1610)
+..+......++..++..... +...+++.+-..+ ++....++..+.+++..++.+....+......|..-+. .+
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~ 172 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDY 172 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCcc
Confidence 333444444566666665443 7788888888888 78888889999999999997633444444444444443 45
Q ss_pred ChHHHHHHHHHHHHHHHhC-ChhHHHHhhhhHHHHHHHhhcCCCh
Q 000369 416 VPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTP 459 (1610)
Q Consensus 416 np~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~~~l~D~~~ 459 (1610)
.|.+=...+.|+..+-... ...........++..+-+.....+.
T Consensus 173 rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 5777666677765322211 1223334445667777777777764
No 272
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=36.77 E-value=6.2e+02 Score=27.94 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=77.7
Q ss_pred CchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcC-----CcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 000369 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD-----SNAPVQDKALDALIAYLKAADADAGRYAKEVCDA 97 (1610)
Q Consensus 23 k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~D-----sN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~ 97 (1610)
|.=+.|..|..-+...+... ++.-|.+. ..+.+.+.... -|.......+..+..++. ...|...++.+
T Consensus 19 KiDrvR~~A~~~l~~ll~~~-~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-----~~~y~~~ll~G 91 (193)
T PF12612_consen 19 KIDRVREVAGKCLQRLLHSQ-DPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-----LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-----cHHHHHHHHhH
Confidence 34478999999999988432 22112221 22333343322 233444445554544432 33677789999
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHH
Q 000369 98 IAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSE 158 (1610)
Q Consensus 98 lveK~l~~k~~~k~~a~~~ll~~~e~-----~~~~~v~~~L~~~l~--~KnpKv~~~~l~~l~~~l~~ 158 (1610)
+|--+-|.-..+...|...++.|+.- +..+.++..|..-+. .++.+++...+.++..++..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 98774444678888899999999842 123466666666554 35677777777777766655
No 273
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.06 E-value=1.5e+02 Score=41.95 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=61.4
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhh
Q 000369 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1610)
Q Consensus 728 ~~knpKv~~~~l~~l~~~i~~fg~~~l~-~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l 798 (1610)
...+++.|--++..+..++...|-..+. +..+|+++.++ ++|.+.+|-..+.+++..+-...|+.+..|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL-~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAEL-MEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 4677899999999999999999976543 56789999999 9999999999999999999999999887664
No 274
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.91 E-value=1.9e+02 Score=29.88 Aligned_cols=44 Identities=16% Similarity=0.398 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhcCch-----hhHHHHHHHHhcCcCChhhHHHHHHHH
Q 000369 950 KHMRECTLTVLDAWLAAVHLD-----KMVPYVTTALTDAKLGAEGRKDLFDWL 997 (1610)
Q Consensus 950 ~~Vr~aa~~aL~~~~~~~~l~-----~ll~~l~~~L~~~~~~~~~R~~~l~~L 997 (1610)
..+...+..|+.+|+...+++ .+++.+...|.++ ..+..+++.|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~----~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP----ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH----HHHHHHHHhC
Confidence 778888888888888766532 3566666666533 3466666543
No 275
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=35.88 E-value=74 Score=33.97 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhh----hh----hhhHHHHHH
Q 000369 63 DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL----EA----VDVFLDVME 134 (1610)
Q Consensus 63 DsN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~----~~----~~~v~~~L~ 134 (1610)
.....+...++=++..+++..+..+.+.+.+.+..++++. .....-.+..++..+.-+ .+ .+.+.+.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3445555666667777776666556566666666666542 222333444444444322 11 367788888
Q ss_pred HHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhhCC-CCHH-HHHHHHHHH
Q 000369 135 KAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQN-VRASSKGLT 192 (1610)
Q Consensus 135 ~~l~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~-~d~~-VR~~a~~l~ 192 (1610)
+-.. .++.++..+++..|..+-..-.....-.+..+++|..++.+ .|.. ||..|.-.+
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 8777 88999999999999865543333334467788899999854 4455 676665443
No 276
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.85 E-value=1.8e+02 Score=38.30 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=85.0
Q ss_pred HHHHHHhccccc-cHhHHHHHHHHHHHHHHH---hChhHHHhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC--
Q 000369 896 LFGGLRGRLYDS-NKNLVMATLITLGAVASA---MGPAVEKSSKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH-- 968 (1610)
Q Consensus 896 L~~~L~~~L~Ds-n~~v~~~al~~l~~la~~---lg~~~~~~~~~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~-- 968 (1610)
+-.++.+.+.|. +..|+.+|.+++..+... ....|-+|.+.+.-.+++.+.. +.-.-|....++|.+++.+++
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 344566777887 455667778888777764 3345888888888777776642 222345666778888887765
Q ss_pred c-------hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-CCchhhhHHHHHHhcCCCCH
Q 000369 969 L-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSS 1026 (1610)
Q Consensus 969 l-------~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~ 1026 (1610)
+ -+.+|.+.+.-+ + .+-.|-.++..|..++..++. +....+++-|++..-.|.++
T Consensus 607 I~P~~~~ivq~lp~LWe~s~--~-e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~s 669 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESE--E-EPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSS 669 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhc--c-CcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCC
Confidence 1 122333333322 2 467899999999998888877 45678889998876666544
No 277
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.85 E-value=4.4e+02 Score=34.77 Aligned_cols=135 Identities=14% Similarity=0.224 Sum_probs=80.0
Q ss_pred chhhhhhccCChHHHHHHHHHHHHH---h-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh------
Q 000369 288 SGFWEGVKATKWSERKDAVAELTKL---A-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------ 357 (1610)
Q Consensus 288 ~~f~~~l~s~kW~~R~eal~~L~~l---~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~------ 357 (1610)
+++.+-+-+++.-+|.+.+...... + ....-..+.-.+-+..|...+.|-+. .+|+..|=-.|-
T Consensus 103 eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~gl~t~~l------~~CleslRVsL~~npVSw 176 (1102)
T KOG1924|consen 103 EEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSGLSTKKL------LECLESLRVSLTSNPVSW 176 (1102)
T ss_pred HhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHcccccccH------HHHHHHHhhhhcCCccHH
Confidence 4566667778888888877764332 1 11001111222344555555667666 445555444332
Q ss_pred -hcchhhhhhHHHHHHHHhccCcHHHH------HHHHHHHHHHHHhcCCChHhhHHH------HHHHhhcCChHHHHHHH
Q 000369 358 -THFSGSSRFLLPVLLEKLKEKKPTVA------ESLTQTLQAMHKAGCLNLVDVVED------VKTSVKNKVPLVRSLTL 424 (1610)
Q Consensus 358 -~~f~~~~~~llp~Ll~klkdkk~~V~------~aa~~al~ai~~~~~~~l~~vl~~------l~~~l~~Knp~vR~~~l 424 (1610)
+.|.-....++--+|+++.|+|..-. ..+..|+.+++.+ .+++..++.. +..++.-+.|+++.+++
T Consensus 177 vn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvv 255 (1102)
T KOG1924|consen 177 VNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPREPNMMTDVV 255 (1102)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCccCccHHHHHH
Confidence 23555555677788888888775433 4677899999976 5666655532 34566667777777776
Q ss_pred HHHHH
Q 000369 425 NWVTF 429 (1610)
Q Consensus 425 ~~L~~ 429 (1610)
..|..
T Consensus 256 kllsa 260 (1102)
T KOG1924|consen 256 KLLSA 260 (1102)
T ss_pred HHHHH
Confidence 66654
No 278
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=35.26 E-value=5.9e+02 Score=27.32 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCh----HhhHHHHHHHhhc--CChHHHHHHHHHHHHHHHhCChh--HHHHhhhhHHHHHHH
Q 000369 381 TVAESLTQTLQAMHKAGCLNL----VDVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICME 452 (1610)
Q Consensus 381 ~V~~aa~~al~ai~~~~~~~l----~~vl~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~~ 452 (1610)
.+-.-+..|+..++.++.++- ..++..+...... .++.+-+.++..|...+.+.+.. .+.+ +--++.+..
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~--evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQ--EVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhc--cCCHHHHHH
Confidence 444556666777777743332 3455666665553 35889999999999998865431 1111 335778889
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhc
Q 000369 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1610)
Q Consensus 453 ~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~L 488 (1610)
.|.+++++++..|...+-++....++..-..+.+.|
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999999999998888777754333344444
No 279
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.66 E-value=8e+02 Score=28.64 Aligned_cols=174 Identities=15% Similarity=0.172 Sum_probs=101.9
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCC--h----HHHHHHHHHHccCcC----HHHHHHHHHHHHHHHHHhhhcchhhh
Q 000369 295 KATKWSERKDAVAELTKLASTKRIAPGD--F----TEVCRTLKKLITDVN----IAVAVEAIQAIGNLARGLRTHFSGSS 364 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~~ki~~~~--~----~~l~~~L~~~l~D~n----~~v~~~A~~~i~~La~~L~~~f~~~~ 364 (1610)
++.-|..-.+-+..|..+.+.+-+.+++ + ...++.+...+.+.+ ..-+...+..|+.+|+.- +....+
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--~~~~La 152 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--GLPNLA 152 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--CCccHH
Confidence 3455655444455554443333333331 1 222333444455445 134555566777777432 344556
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhh
Q 000369 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1610)
Q Consensus 365 ~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1610)
+.+---.-.++++++..+++.+.---++++.. .-..++-.++.-+.++-+-+|..++..|..+++..+-. .+.-.
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~---~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~~~~~ 227 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAFFPD---HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--SPHGA 227 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--CCcch
Confidence 66666666777777777776554444444321 12356667788888999999999999999999875422 11335
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 445 ~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+++..+.+.+....- ..|.+.+..++.+-|.
T Consensus 228 dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 228 DLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 667777777765544 3467777777766663
No 280
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.72 E-value=48 Score=36.18 Aligned_cols=90 Identities=12% Similarity=0.229 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-----cCChhhHHHHHHHHHHHHHH-hCC-CCcChhhHHHhhhhhhCC
Q 000369 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSE-FGA-KIIPPKRILKMLPELFDH 179 (1610)
Q Consensus 107 ~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~-----~KnpKv~~~~l~~l~~~l~~-fG~-~~~~~k~il~~l~~ll~~ 179 (1610)
...|.....-+-.|++.++.+.+++.|..... ........+|+.||..+++. +|. .++.-..++..+...+..
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 34455556666677776666666666643322 23456788899999877763 565 345556788999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 000369 180 QDQNVRASSKGLTLELC 196 (1610)
Q Consensus 180 ~d~~VR~~a~~l~~ely 196 (1610)
.+..+|..+..++..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 281
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.40 E-value=8.2e+02 Score=28.07 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHHHHhccccc--cHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCC--------cHH----HHHHHHHHHH
Q 000369 896 LFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--------KKH----MRECTLTVLD 961 (1610)
Q Consensus 896 L~~~L~~~L~Ds--n~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~--------k~~----Vr~aa~~aL~ 961 (1610)
++..|...+.+. ...+....++++..|++. ++. |...+++.++..-.+. ... |+......|.
T Consensus 115 lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~-RP~---~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~ 190 (239)
T PF11935_consen 115 LLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ-RPQ---FMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLL 190 (239)
T ss_dssp HHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH-SGG---GHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-hhH---HHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHH
Confidence 555565656544 466677778888887765 333 4556677776543332 333 4444444444
Q ss_pred HHHHhcCchhhHHHHHHHHh
Q 000369 962 AWLAAVHLDKMVPYVTTALT 981 (1610)
Q Consensus 962 ~~~~~~~l~~ll~~l~~~L~ 981 (1610)
.+.++-....+-+.|..+|.
T Consensus 191 ~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 191 HLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp HHHTSGGGGGGHHHHHHHHH
T ss_pred HHHCCCCchhhHHHHHHHHH
Confidence 44444334455566666666
No 282
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.28 E-value=99 Score=34.24 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=70.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH---hhhcchhh
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGS 363 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~--~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~---L~~~f~~~ 363 (1610)
-|.+.+.+.+.-.|.=|-+.+..|+ ...++.+ -+..|+.-|+..+.-.|..|...++++|..|... .|...-||
T Consensus 118 ~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilp-VLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPf 196 (262)
T KOG3961|consen 118 LFFDGLAETDHPYRFVARQGITDLLLAGGEKILP-VLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPF 196 (262)
T ss_pred HHhhhhhhcCCCcchhhhhcHHHHHHhccccccc-ccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhH
Confidence 6999999988888888888888755 4455554 3678999999999988888888899999887763 56778899
Q ss_pred hhhHHHHHHHHhccCcH
Q 000369 364 SRFLLPVLLEKLKEKKP 380 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~ 380 (1610)
-++++|. ++.+|.++-
T Consensus 197 YRQlLp~-~n~~k~~n~ 212 (262)
T KOG3961|consen 197 YRQLLPV-LNTFKNSNV 212 (262)
T ss_pred HHHhhhh-hhhhccccc
Confidence 9999975 456666643
No 283
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=32.28 E-value=2.6e+02 Score=32.32 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
-+..+++.+++..+..|..+.-++..+-..+ -+|.+.+.|.+.+.+|.+|-++.+.|... . ..+.+..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a----~e~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI----A----DEDCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh----c----CHHHHHH
Confidence 3556677777778888888877777665443 35667777776555899999998887632 1 1334444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
|...++|..+-||+.+..+|..+-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 667889999999999988886543
No 284
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=32.24 E-value=9.9e+02 Score=29.33 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000369 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~ 400 (1610)
++|..|+++.+. +.+--+.|.+.|.... +.|...+..-+-.-++.+.|--..||..|..-|--++.. ..
T Consensus 25 ~~y~~il~~~k~-----~~k~k~lasq~ip~~f----k~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~ 93 (460)
T KOG2213|consen 25 DDYEGILKAVKG-----TSKEKRLASQFIPRFF----KHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA 93 (460)
T ss_pred HHHHHHHHHhhc-----chHHHHHHHHHHHHHH----hhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch
Confidence 457777766655 3333456666666554 355666777777778888888888886665555544432 23
Q ss_pred hHhhHHHHHHHhh------------cCChHHHHHHHHHHHHHHHhCChhHHHHh-hhhHHHHHHHhhcCCChHHHHHHHH
Q 000369 401 LVDVVEDVKTSVK------------NKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFS 467 (1610)
Q Consensus 401 l~~vl~~l~~~l~------------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~~~l~D~~~~VR~aA~~ 467 (1610)
+..+.+.+...|+ -..-++|.-++.|+..-+-..+...+.+- =..++..+.+.|.|-..+
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge------- 166 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE------- 166 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH-------
Confidence 3333333322221 12457788888888766655554444321 234566677777776665
Q ss_pred HHHHHHHHhCChhHHHhhh-hccHHHHHHHHHHHhc
Q 000369 468 VLAAIAKSVGMRPLERSIE-KLDDVRRNKLSEMIAG 502 (1610)
Q Consensus 468 al~~l~~~~g~~~~~~~l~-~Ld~~~~kki~e~~~~ 502 (1610)
-|..+|.+++. + ..+. .=...++..+.+..++
T Consensus 167 ef~lfm~~L~~--l-k~~~~k~~~a~lqeLa~~~e~ 199 (460)
T KOG2213|consen 167 EFTLFMDILAS--L-KSLQTKAGEARLQELAEEQEG 199 (460)
T ss_pred HHHHHHHHHHh--h-hcccCCCCHHHHHHHHHHHhh
Confidence 23444444442 1 1222 1234455556665554
No 285
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.91 E-value=2.1e+02 Score=34.23 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=44.1
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH---HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
.+..++..+.+.++.+...++..|+.++...+..... ..++.++..+...+...+.+++..|..+|..+.+.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 3444556777889999999999999998876543332 44555555666655556777778888888777643
No 286
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=30.96 E-value=4.1e+02 Score=28.31 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc------CCChHhhHHHHHHHhh--
Q 000369 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVK-- 413 (1610)
Q Consensus 342 ~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~------~~~l~~vl~~l~~~l~-- 413 (1610)
+..+.-++..+-..-+..|...+..++..++..-... -.-.+..++.+++... -..-+.+++.+..-+.
T Consensus 22 r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~ 98 (157)
T PF11701_consen 22 RSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRK 98 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 5556556655556667777777777777766444332 1122334444444320 0123466777777777
Q ss_pred cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhc-CCChH-HHHHHHHHHH
Q 000369 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-DGTPE-VRDAAFSVLA 470 (1610)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~-D~~~~-VR~aA~~al~ 470 (1610)
.++..+...+++.|.... ..+..-.-..+.+++.|.+.+. +.+.. +|-.|.-+|.
T Consensus 99 ~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 777888888887776432 2222222345788899999994 45455 7877766654
No 287
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.11 E-value=1.2e+03 Score=29.49 Aligned_cols=133 Identities=11% Similarity=0.182 Sum_probs=97.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhh-----
Q 000369 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK----- 727 (1610)
Q Consensus 653 ~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~----- 727 (1610)
+-++.......++++..++. ++.+...++..++..|..-.+-....+.+.+++..++........+..++..+.
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 34455566888888888877 577777888888877776666667788899999999976666667788888762
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhCCCCC---ChHh--HHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 728 DHKNPKVLSEGILWMVSAVEDFGVSHL---KLKD--LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 728 ~~knpKv~~~~l~~l~~~i~~fg~~~l---~~k~--li~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
...++.+..+++..+..++-..|..++ +... +++.+..+ +...++.|=.....++-.+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHH
Confidence 236778888999999999987755443 3444 88888887 88888866655555554444
No 288
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.05 E-value=1.2e+03 Score=29.18 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=115.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcccc-c----hhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcC-CC
Q 000369 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-D----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF 677 (1610)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~-~----~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~-~~ 677 (1610)
..++..+.|.|-++|..--.-|+.+....... . .....+++++- ....+......|+++..++.... .+
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~-----e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY-----ETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH-----TTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-----CcccccCHHHHHHHHHHHHhccCCCC
Confidence 35677888999999999888888887663221 1 11234444442 23444567788999988887543 22
Q ss_pred chhhHHHHHHHHHhhhccch----hhHHHHHHHHHHHhhhC--hhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCC
Q 000369 678 PKKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1610)
Q Consensus 678 ~~~~~~~il~~LveKlgd~K----~r~~a~~~L~~l~e~~~--~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~ 751 (1610)
.. .....+-.++--|-..+ -...-..++..+++..+ ...++..+++.- -.-|+.-..-.++.+..+++....
T Consensus 211 k~-eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 211 KE-EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW-PKTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp -H-HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS--SS-HHHHHHHHHHHHHHHTT--H
T ss_pred cH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCH
Confidence 22 22233322232333322 24666778888887643 244566666653 345666667777778777764443
Q ss_pred CCCC--hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcC
Q 000369 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1610)
Q Consensus 752 ~~l~--~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~ 816 (1610)
..+. ...+...+..+ +++.|-.|-+.|.. -|..+.+...+.+-...++..+-..+.++
T Consensus 289 ~~f~~i~~~lf~~la~c-i~S~h~qVAErAl~------~w~n~~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKC-ISSPHFQVAERALY------FWNNEYFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHHHHHHHHH-HTSSSHHHHHHHHG------GGGSHHHHHHHHCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH------HHCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2221 24566667775 99999999877754 46666666666666666666666655543
No 289
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.25 E-value=5.3e+02 Score=36.98 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=78.0
Q ss_pred cccchHHHhhc-----CCCChhHHHHHHHHHHHHHHHccccC-CCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHH
Q 000369 852 GKFTPTLVKSL-----ESPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1610)
Q Consensus 852 ~~l~~~ll~~l-----~d~~Wk~R~eale~l~~ll~~a~~~i-~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~ 925 (1610)
..+.++++..+ .+..|++|...+.-++..+-. +..+ +.....++...+...++|....|+..|..++..+..+
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~-n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYS-NIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence 34556666543 356899999999999988864 3333 2223468888888899999999999999999888765
Q ss_pred hChhHHHhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh
Q 000369 926 MGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--LDKMVPYVTTALT 981 (1610)
Q Consensus 926 lg~~~~~~~~~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~ 981 (1610)
---.+.+ ...-+..-.....++. ..+.+|..++.+++-..+ ++.++|.....|.
T Consensus 1600 s~~~~~~--~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1600 SKFQFVS--DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLS 1656 (1710)
T ss_pred cccccch--HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 2222211 1111111222223333 344566677777777665 3456665554443
No 290
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=28.84 E-value=1.1e+03 Score=30.92 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHH---HhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-ch-hh-----HHHHHHHH
Q 000369 911 LVMATLITLGAVAS---AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LD-KM-----VPYVTTAL 980 (1610)
Q Consensus 911 v~~~al~~l~~la~---~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-l~-~l-----l~~l~~~L 980 (1610)
++.+||.++..++. +++..++. ..+..++++.+.|....|..++..++..++-..+ +. .+ ++.+...+
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 56677776665554 56555432 2566677777789999999999999988876554 22 22 33455555
Q ss_pred hcCcCChhhHHHHHHHHHHHhccCCCC--CchhhhHH-H-HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCC
Q 000369 981 TDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLK-P-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1610)
Q Consensus 981 ~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~-p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~ 1056 (1610)
.+. .+..|...+..|..+.=..... .....-+. - +...++|+++.|.+.+...|..+. .|.+.-..++-+..
T Consensus 471 ~~~--~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~--c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 471 TDP--DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT--CNSRKSVDFLLEKF 546 (678)
T ss_pred cCC--CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHHhh
Confidence 544 5667877776666554333221 11112222 2 344569999999999998887765 34444444554444
Q ss_pred hhHHHHHHHHHh
Q 000369 1057 GPALALILERIK 1068 (1610)
Q Consensus 1057 ~~~~~~i~~~l~ 1068 (1610)
+....+|-.+++
T Consensus 547 ~~~ld~i~l~lk 558 (678)
T KOG1293|consen 547 KDVLDKIDLQLK 558 (678)
T ss_pred hHHHHHHHHHHh
Confidence 444445544443
No 291
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.65 E-value=4.3e+02 Score=34.61 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=74.0
Q ss_pred HHHHHHHHHccC----cCHHHHHHHHHHHHHHHHHhhhcch----hhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHHHH
Q 000369 325 EVCRTLKKLITD----VNIAVAVEAIQAIGNLARGLRTHFS----GSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMHK 395 (1610)
Q Consensus 325 ~l~~~L~~~l~D----~n~~v~~~A~~~i~~La~~L~~~f~----~~~~~llp~Ll~klkdkk~-~V~~aa~~al~ai~~ 395 (1610)
++++.+...+++ .+..+...|+-+++.|+......-. ..+..+++.+.+.+.+... .-.+....+|.++..
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 455666666553 3556788888888888875443211 1134555555555543211 011122334444432
Q ss_pred hcCCChHhhHHHHHHHhh---cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhc--CCChHHHHHHHHHH
Q 000369 396 AGCLNLVDVVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--DGTPEVRDAAFSVL 469 (1610)
Q Consensus 396 ~~~~~l~~vl~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~--D~~~~VR~aA~~al 469 (1610)
.+....++.+...+. ...+.+|..++..|.+....++.. +.+.+..... +.+++||-+|.-.|
T Consensus 473 ---~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 473 ---AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred ---cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 344444444444333 445789999999998776655443 2334444443 45678999887655
No 292
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.98 E-value=65 Score=40.11 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=39.1
Q ss_pred cCChhhHHHHHHHHHHHHHHh--CCCCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 139 NKVAKAVVPAIDVMFQALSEF--GAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 139 ~KnpKv~~~~l~~l~~~l~~f--G~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
+..|.+.+-|++=+.+.++.| |-.++.--..-..+.+++.|.|++||.+|..+++.|.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 445666666666677777765 3333221112335778999999999999999988774
No 293
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=27.95 E-value=9.5e+02 Score=27.40 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=65.3
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHH----
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS---- 411 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~---- 411 (1610)
+.++.+....++++..++.. ++ .....++..+.......+.....-+...+..+........ ..+..++..
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~---~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACH---KN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred CCChHHHHHHHHHHHHHhcc---Cc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 55555566666666555542 22 3344444444444444444443333344444444311111 122222111
Q ss_pred ----h--hcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh-cCCChHHHHHHHHHHHHHH
Q 000369 412 ----V--KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 412 ----l--~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l-~D~~~~VR~aA~~al~~l~ 473 (1610)
. .+..+........-+..+....+. +-.++++.+..++ ++.++.++..|.+++..++
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 122344444433333333332222 3367888999999 8999999999999999998
No 294
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=27.82 E-value=1.2e+03 Score=28.73 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=97.6
Q ss_pred ccCChHHHHHHHHHHHHH-hc--CCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhh--cchhhhhhHHH
Q 000369 295 KATKWSERKDAVAELTKL-AS--TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--HFSGSSRFLLP 369 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l-~~--~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~--~f~~~~~~llp 369 (1610)
.++.=++|.++|+.+.-. ++ -|.....+...+...+.++++...+-=-..+...++.++--++. .-+-......|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 567789999999998753 32 24445567888999999999855554455555677777776663 22344555555
Q ss_pred HHHHHhccCcHHH--HHHHHHHHHHHHHhcCCChHhhHH--H----H-----HHHhhcC--ChHHHHHHHHHHHHHHHh-
Q 000369 370 VLLEKLKEKKPTV--AESLTQTLQAMHKAGCLNLVDVVE--D----V-----KTSVKNK--VPLVRSLTLNWVTFCIET- 433 (1610)
Q Consensus 370 ~Ll~klkdkk~~V--~~aa~~al~ai~~~~~~~l~~vl~--~----l-----~~~l~~K--np~vR~~~l~~L~~~l~~- 433 (1610)
.+...+-+.-..| +..+..|+.... . ....++.+ . + ...+..+ .+.+-......+..|+..
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~-l--~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTAC-L--IAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAW 226 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHH-H--HHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHH
Confidence 5555554543333 333333333222 1 11111111 1 1 1111111 111111122222222222
Q ss_pred ------CChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 434 ------SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 434 ------~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
++.+........+.|.+...|.--..++|.++.+++..+..+.-
T Consensus 227 a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q 276 (427)
T KOG2842|consen 227 SLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQ 276 (427)
T ss_pred HHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHh
Confidence 22221212233467888999988899999999999998887754
No 295
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=7.9e+02 Score=31.01 Aligned_cols=104 Identities=15% Similarity=0.266 Sum_probs=58.8
Q ss_pred hhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCccccHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCc----ccccc
Q 000369 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI----SGQLK 1331 (1610)
Q Consensus 1256 ~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~----~~~~k 1331 (1610)
-+|-.+|.|+||-.+.|-++..=++-++....|..+.. +++.| ++|-+.. .+---
T Consensus 228 nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~V-----------------V~d~I----edf~f~pn~~~~s~yy 286 (821)
T COG5593 228 NLLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEV-----------------VLDGI----EDFYFKPNDLFRSRYY 286 (821)
T ss_pred HHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHH-----------------HHhhh----hHheeccccccceeee
Confidence 36777899999988888888777777777777766532 22222 2332221 00011
Q ss_pred hHHHHHhhh-cCCchHHHHHHHHHHHHHHHhcChHHHHHhhcCCHHHH---HHHHHHHHh
Q 000369 1332 SLQIVASLT-AERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK---SMLDDRFKW 1387 (1610)
Q Consensus 1332 ~l~~ia~~i-~drd~~VR~aAl~~l~~~y~~~G~~v~~~~g~l~~~~~---~~l~er~kr 1387 (1610)
+|-.++..+ ..|. .+--|.|+.+|+.+ +.+|+.++....+ ..|+|..+.
T Consensus 287 alitLnqt~l~~~e----~~van~lv~vyf~~---f~kfl~n~~ke~~~~s~~leek~~~ 339 (821)
T COG5593 287 ALITLNQTELENRE----KAVANKLVKVYFSI---FRKFLENIPKEHRVNSNILEEKLVI 339 (821)
T ss_pred eehhhHHHHHhhhH----HHHHHHHHHHHHHH---HHHHHhcCchhhcccchhHHHHHHh
Confidence 222222221 1122 23346788888743 5678889988776 555555443
No 296
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=27.31 E-value=6.6e+02 Score=30.49 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.5
Q ss_pred HhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 171 KMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
.|.|.||.+.|..||+.+..++.+++
T Consensus 241 ~WAP~LL~y~d~~VR~~Te~fL~~~l 266 (337)
T PF12030_consen 241 DWAPGLLGYPDRSVRNGTEDFLQELL 266 (337)
T ss_pred ccchHhhCCCchhHHHHHHHHHHHHh
Confidence 47889999999999999999998865
No 297
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=26.84 E-value=3.3e+02 Score=33.38 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCC-----hHHHHHHHHHH
Q 000369 1205 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN-----IEKVREKMREL 1279 (1610)
Q Consensus 1205 ~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~-----k~~vr~~v~~i 1279 (1610)
...++--+.||+---+.-.+...++.+.-++..+|..+..--|.= .-+.++++.++.++==| +..+-..+-..
T Consensus 63 ~~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytk--sk~~cll~~~vd~llLp~~l~~~k~l~~~l~~a 140 (373)
T PF14911_consen 63 LLEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTK--SKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQA 140 (373)
T ss_pred HHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheec--CccccHHHHHHHHhcccccccCCCCCChHHHHH
Confidence 445667788999887756689999999999999998888776543 35899999999877222 10111111111
Q ss_pred HHHHHhcCCccccHHHHHhcccCCchhhHHHHHHHHHHHHHhh----CCCcccccch-H--HHHHhhhcCCchHHHHHHH
Q 000369 1280 TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH----GAEISGQLKS-L--QIVASLTAERDGEIRKAAL 1352 (1610)
Q Consensus 1280 l~~~~~~~~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~----G~~~~~~~k~-l--~~ia~~i~drd~~VR~aAl 1352 (1610)
+ .|.||.+++|+.+.+=++=+=--.-++.+|.+| .... +.+. + ...-.+...+|...|...+
T Consensus 141 i---------~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~--~~~~~~~l~~~~~~~~~~~~~l~~~il 209 (373)
T PF14911_consen 141 I---------RKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPAS--PSKLVARLSTLLSAFTPRNEELRKFIL 209 (373)
T ss_pred H---------HHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCC--CccccccccccccchhhhhhHHHHHHH
Confidence 1 467888888886544444333444455555554 4433 2222 1 2344566678999999999
Q ss_pred HHHHHHHHhc
Q 000369 1353 NTLATGYKIL 1362 (1610)
Q Consensus 1353 ~~l~~~y~~~ 1362 (1610)
+.+..-|...
T Consensus 210 ~~i~~~fl~~ 219 (373)
T PF14911_consen 210 QVIRSNFLEF 219 (373)
T ss_pred HHHHHHHhcC
Confidence 9999887543
No 298
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.71 E-value=3.5e+02 Score=27.50 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=63.0
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc---ccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L---~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
+..++.+|-.-...+.+|..... .+..+..++..|.+|| ..++..++..||.+|..|...-...|-..++.
T Consensus 10 eAT~~d~~gp~~~~l~eIa~~t~------~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~ 83 (125)
T PF01417_consen 10 EATSNDPWGPPGKLLAEIAQLTY------NSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD 83 (125)
T ss_dssp HHTSSSSSS--HHHHHHHHHHTT------SCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHh------ccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 44667788887777776655432 1233788999999999 67788899999999999999877767665543
Q ss_pred HHHHHH--HHh--CC-----CcHHHHHHHHHHHHHH
Q 000369 937 VLSDIL--KCL--GD-----NKKHMRECTLTVLDAW 963 (1610)
Q Consensus 937 llp~ll--~~l--~D-----~k~~Vr~aa~~aL~~~ 963 (1610)
-...|- ..+ .| ....||+.|...++-+
T Consensus 84 ~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 84 HIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp THHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 333221 222 11 2235888887666544
No 299
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=26.65 E-value=3.3e+02 Score=28.54 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhchhhhhh-hHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHH-
Q 000369 70 DKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVP- 147 (1610)
Q Consensus 70 ~~~leal~~~v~~~~~~~~~~-~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~~KnpKv~~~- 147 (1610)
-+.++||...+.+........ +.+-.-.+|-|.|. .+|..-++-.+.=...+..+.++-.|.+||..-.-.-...
T Consensus 49 g~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~---~ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~ 125 (152)
T KOG3380|consen 49 GKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLT---SIKQADIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVS 125 (152)
T ss_pred ccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHH
Confidence 345677777776653311111 22222223333333 2333333333332233445677778889987555444444
Q ss_pred HHHHHHHHHHHhCCC
Q 000369 148 AIDVMFQALSEFGAK 162 (1610)
Q Consensus 148 ~l~~l~~~l~~fG~~ 162 (1610)
+|.|..+++..||..
T Consensus 126 LL~WHEk~~~~~GvG 140 (152)
T KOG3380|consen 126 LLQWHEKLVAKSGVG 140 (152)
T ss_pred HHHHHHHHHHhcCCc
Confidence 899999999999984
No 300
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.28 E-value=2.7e+02 Score=39.59 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=54.7
Q ss_pred HhhHHHHHH-HhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 402 VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 402 ~~vl~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
..++.++.. ...+-+|.+|..++.|+...+=...-.......+.|-..+.+.++|.+-+||+.|.+|+..++..-
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 455666653 334677999999999998766432111112234678888999999999999999999999998663
No 301
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=5.6e+02 Score=35.07 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=51.2
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhCC--hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHhCChhHHHhhh
Q 000369 411 SVKNKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIE 486 (1610)
Q Consensus 411 ~l~~Knp~vR~~~l~~L~~~l~~~~--~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~--~~~g~~~~~~~l~ 486 (1610)
+|-|..|..|+.++..|..+-.... +..+. ...++-.+--.++...+.+|.+|.+.|+.+. +..|-+.-..++.
T Consensus 1820 ~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~--hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQPSMRARVLDVLYALSSNGQIGKEALE--HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcChHHHHHHHHHHHHHhcCcHHHHHHHh--cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 3458889999999999876443211 11111 1123334444567788999999999999887 5577665333443
Q ss_pred hccHHHHHHHH
Q 000369 487 KLDDVRRNKLS 497 (1610)
Q Consensus 487 ~Ld~~~~kki~ 497 (1610)
=|.+.-...++
T Consensus 1898 FLP~~f~d~~R 1908 (2235)
T KOG1789|consen 1898 FLPEIFADSLR 1908 (2235)
T ss_pred hchHHHHHHHh
Confidence 34443333333
No 302
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=25.34 E-value=2.2e+02 Score=29.36 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCc
Q 000369 1210 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1289 (1610)
Q Consensus 1210 Dlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~ 1289 (1610)
+-+|++.+-+......+-.. ...+-.++-.+...+..+++.|...+..++....|-+.+........+-..... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~ 77 (140)
T PF05099_consen 3 KKLFKSSLQQQFKRLRQPQE--REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE---P 77 (140)
T ss_dssp ------HHHHHHTTT--STT--HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH---C
T ss_pred ccchhhhccccccccCCchH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc---c
Confidence 34566666654444222211 223333444566678899999999999999888886555444333333333333 2
Q ss_pred cccHHHHHhcccC-CchhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchH
Q 000369 1290 TKTLPYILEGLRS-KNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE 1346 (1610)
Q Consensus 1290 ~kv~~~l~~gl~s-Kn~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~ 1346 (1610)
..+..++ ..++. =++..|...+..+..+...-|--...-...|..|+..++=....
T Consensus 78 ~~~~~~~-~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~ 134 (140)
T PF05099_consen 78 IDLEELL-RELRDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEED 134 (140)
T ss_dssp CHHHHHH-HHHCTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS-
T ss_pred ccHHHHH-HHHHHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 2333443 23333 34788888888888877776642211123468888887644333
No 303
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.28 E-value=1.2e+03 Score=27.60 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-ccCcCHHHHHHHHHHHHHHHHHhh-------hcchhhhhhHHH
Q 000369 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL-ITDVNIAVAVEAIQAIGNLARGLR-------THFSGSSRFLLP 369 (1610)
Q Consensus 298 kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~-l~D~n~~v~~~A~~~i~~La~~L~-------~~f~~~~~~llp 369 (1610)
.=.+|...+..+..++....+. |...+..+... -.+.+..|...++..+..+-..+. ..|..|+..++.
T Consensus 34 ~~~~R~~ll~D~~al~~~g~~~---~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~ 110 (324)
T PF11838_consen 34 SPLDRAQLLDDLFALARAGRLS---YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLE 110 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTSS----HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3457777777777777654443 77788888777 468899999999999999986665 126678889999
Q ss_pred HHHHHhccC
Q 000369 370 VLLEKLKEK 378 (1610)
Q Consensus 370 ~Ll~klkdk 378 (1610)
+++++++-.
T Consensus 111 ~~~~~l~~~ 119 (324)
T PF11838_consen 111 PLYERLGWD 119 (324)
T ss_dssp HHHHH--SS
T ss_pred HHHHHcCCC
Confidence 999998554
No 304
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.88 E-value=4.9e+02 Score=28.72 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---ChHhhHHHHHHHhh-----cCChHHHHHHHHHHHHHHHh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL---NLVDVVEDVKTSVK-----NKVPLVRSLTLNWVTFCIET 433 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~---~l~~vl~~l~~~l~-----~Knp~vR~~~l~~L~~~l~~ 433 (1610)
.++..++..++....||-..||..|..++..++.+... .++ -.+.+...+. +-+|..=.++...+..++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 45678889999999999999999999999999943111 011 1223333222 1234433444443333322
Q ss_pred CChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 434 ~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
+..+...++..++--.+.....+...|..+|..++.-
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 1133455666666667888888888888888887763
No 305
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.66 E-value=1.1e+03 Score=30.55 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=84.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh
Q 000369 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (1610)
.-+--++....+++..|-.+..+.+..+...+.+...-+-..+++.+.+-++.-+.+.+..+...+...-. .++
T Consensus 285 ~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vH------T~d 358 (652)
T KOG2050|consen 285 KTLDKILAEAPEKKASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVH------TRD 358 (652)
T ss_pred ccHHHHHHhChHhHHHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc------CCc
Confidence 34556677778889999999999999998774444332333445677777788888888877766654210 122
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHH-----HHhCChhHHHhhhhccHHHH
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIA-----KSVGMRPLERSIEKLDDVRR 493 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~-----~~~g~~~~~~~l~~Ld~~~~ 493 (1610)
=....+.|+..+++.=|..-.++|-... ..+|...+-.+++.+|+.++
T Consensus 359 GS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT~l 411 (652)
T KOG2050|consen 359 GSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDTKL 411 (652)
T ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchHHH
Confidence 2345778888999988888888775544 44677777888888887653
No 306
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.56 E-value=3.5e+02 Score=27.48 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=61.2
Q ss_pred hhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHc---cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH--
Q 000369 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI---TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL-- 367 (1610)
Q Consensus 293 ~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l---~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~l-- 367 (1610)
.-.+.+|..-...+.+|....- ...+|..++..|.+++ ...+..++..|+.+|..|...=...|-..++.-
T Consensus 11 AT~~d~~gp~~~~l~eIa~~t~----~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~ 86 (125)
T PF01417_consen 11 ATSNDPWGPPGKLLAEIAQLTY----NSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHID 86 (125)
T ss_dssp HTSSSSSS--HHHHHHHHHHTT----SCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHh----ccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3455778777777777777652 2356889999999999 588889999999999999886555554433322
Q ss_pred -HHHHHHHh-------ccCcHHHHHHHHHHHHHH
Q 000369 368 -LPVLLEKL-------KEKKPTVAESLTQTLQAM 393 (1610)
Q Consensus 368 -lp~Ll~kl-------kdkk~~V~~aa~~al~ai 393 (1610)
+..+ ..| .|....||+.|.+.++.+
T Consensus 87 ~I~~l-~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 87 IIREL-QDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HHHGG-GG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHhhc-ceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 2222 222 122335777776666655
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=24.45 E-value=1.2e+03 Score=27.29 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh--------hcchhhhhhHHHHHHHHhccCc-----HHHHHHHH
Q 000369 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--------THFSGSSRFLLPVLLEKLKEKK-----PTVAESLT 387 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~--------~~f~~~~~~llp~Ll~klkdkk-----~~V~~aa~ 387 (1610)
++|..|...+.|.+.-++. ...+++.+..|+.-.. ..|--.+-..+|.++..+.+.+ +.+++.|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A- 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA- 136 (262)
T ss_pred CCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-
Confidence 5566666666666655544 5555666666655321 1233346678999999998888 4445444
Q ss_pred HHHHHHHHh-cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000369 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1610)
Q Consensus 388 ~al~ai~~~-~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~ 466 (1610)
+.+..+... +..++..++..... ++- +-+ -+|+..++.......+.++--.++-.++..|..+-+.+|....
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~---~~f-r~~---~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAK---GRF-RDK---DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHh---cCC-CCH---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 555555543 44556665554432 222 222 2344333332211222233345666788888999999999999
Q ss_pred HHHHHHHHHhCCh
Q 000369 467 SVLAAIAKSVGMR 479 (1610)
Q Consensus 467 ~al~~l~~~~g~~ 479 (1610)
+.+..+...+..+
T Consensus 210 ~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 210 QILKVLLPHVDMR 222 (262)
T ss_pred HHHHHHhccccCC
Confidence 9998888776643
No 308
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=24.11 E-value=4.2e+02 Score=28.10 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred ccHhHHHHHHHHHHHHHHHhChh-HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcC
Q 000369 907 SNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 985 (1610)
Q Consensus 907 sn~~v~~~al~~l~~la~~lg~~-~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~ 985 (1610)
.+.........+|...+...++. ++.|.+.+....-+.-++....+++. ++..++++..- . ++...
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~---~iq~~~~~a~~------~----~~~~~ 92 (152)
T PF12422_consen 26 LSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEV---CIQDLMEAAIH------L----EYLPL 92 (152)
T ss_pred hhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHH---HHHHHHHHhHH------h----cchHh
Confidence 34445555566666666444542 44555555555554445555555544 33333332210 0 11111
Q ss_pred ChhhHHHHHHHHHHHhccCCCC-CchhhhHHH-HHHhcCCCCHHHHHHHHHHHHH
Q 000369 986 GAEGRKDLFDWLSKQLTGLSGF-PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVE 1038 (1610)
Q Consensus 986 ~~~~R~~~l~~L~~~l~~~~~~-~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~ 1038 (1610)
.+..|.-+..+-... ..... .-+..+..| |...|.-+|+.||..|...+..
T Consensus 93 ~~~~R~~L~~f~~~k--~~~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 93 HSKFREVLLSFHSQK--KRKGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 112233322222221 00101 113556778 6689999999999999877643
No 309
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.04 E-value=4.8e+02 Score=32.21 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCc-------HHHHHHHHhHHHHHHHHHhhcCCCCCHH
Q 000369 1180 LSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSN-------TTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1610)
Q Consensus 1180 ~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn-------~~v~~~~L~~l~~l~~~l~~~~y~l~~~ 1252 (1610)
|..++-+.++-.+.++....=-.+..=+-+=.|+--....+.|++ -.....++.=+..-+..|.+.. ++|.
T Consensus 229 Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk--ysDE 306 (442)
T KOG2759|consen 229 FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK--YSDE 306 (442)
T ss_pred cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC--CCcH
Q ss_pred HHHhhhHHHHHhhCCChHHHHHH---HHHHHHHHHhcCCccc------------------cHHHHHhcccCCc-hhhHHH
Q 000369 1253 EAAVFLPCLVEKSGHNIEKVREK---MRELTKQIVNFYSATK------------------TLPYILEGLRSKN-NRTRIE 1310 (1610)
Q Consensus 1253 ea~~~lp~l~~K~Gd~k~~vr~~---v~~il~~~~~~~~~~k------------------v~~~l~~gl~sKn-~r~r~e 1310 (1610)
+...=|-+|-++++++-...-+- ..++.--.-.--|+-+ ++..|++-|+++| |..-.-
T Consensus 307 DL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~V 386 (442)
T KOG2759|consen 307 DLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCV 386 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeeh
Q ss_pred HHHHHHHHHHhh--CCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000369 1311 CVDLVGFLIDHH--GAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (1610)
Q Consensus 1311 ~l~~l~~li~~~--G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~ 1358 (1610)
+..-||..++.| |-.+....++=..|=.++...|++||--||-|+-.+
T Consensus 387 Ac~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 387 ACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred hhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
No 310
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.94 E-value=1.6e+03 Score=28.59 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHccccCCCC-Chhh--HHHHHHhccccccHhHHHHHHHHHHHHH-HHhChh
Q 000369 871 LESIEAVNKILEEANKRIQPA-GTGE--LFGGLRGRLYDSNKNLVMATLITLGAVA-SAMGPA 929 (1610)
Q Consensus 871 ~eale~l~~ll~~a~~~i~~~-~~~e--L~~~L~~~L~Dsn~~v~~~al~~l~~la-~~lg~~ 929 (1610)
..|+.-++.++-+....-.|. .+.. +++.|...++-.+..|....+..+..+. ...++.
T Consensus 274 RGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 274 RGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred hhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 378888888876532222222 2455 8888888887666667777777777777 555543
No 311
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.70 E-value=2.7e+02 Score=26.41 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=53.4
Q ss_pred hhHHHHHHhccc-cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000369 894 GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1610)
Q Consensus 894 ~eL~~~L~~~L~-Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~ 961 (1610)
.+++..+...+. ..+..++...+.|+..|...-|..+..--+.++..+-....|..+.+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456777766653 45778999999999999999888887777777888877888888888777777664
No 312
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.69 E-value=1.1e+02 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
.+|.+++++...+++++..+..+|..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6788889999999999999998887653
No 313
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=23.62 E-value=7.5e+02 Score=29.85 Aligned_cols=105 Identities=10% Similarity=0.188 Sum_probs=66.0
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-------hHHHHHHHHhhhc--CCC--------hhhHHHHHHH
Q 000369 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-------AKEVCDAIAAKCL--TGR--------PKTVEKAQAV 116 (1610)
Q Consensus 54 ~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~-------~~~v~~~lveK~l--~~k--------~~~k~~a~~~ 116 (1610)
...+-+.++.+....+..+|..|.+.+...+...++. ....++.+...-- +.+ +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4455566777888888888888888887433222211 1123334432111 011 2889999999
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHhhcCChhhHHHHHHHHHH-HHHH
Q 000369 117 FMLWVELEAVD---------VFLDVMEKAIKNKVAKAVVPAIDVMFQ-ALSE 158 (1610)
Q Consensus 117 ll~~~e~~~~~---------~v~~~L~~~l~~KnpKv~~~~l~~l~~-~l~~ 158 (1610)
++.|.+...+. .++..+.+++..-.+.++...+.+|.+ ++.+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~ 189 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKD 189 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccC
Confidence 99999875442 335666777777778888888888864 4443
No 314
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=23.18 E-value=1.4e+03 Score=27.62 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhC----hhHHHhhhhHHHHHHHH
Q 000369 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG----PAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg----~~~~~~~~~llp~ll~~ 944 (1610)
.+.-+..-+..|+.+. ++.|-..|+..+..+...+++++..|+.-.| ..+-.+...-++.+-+.
T Consensus 42 ~~~~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kl 109 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKL 109 (330)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHH
Confidence 4555666666666531 4455555666667777899999999988333 33322222222222222
Q ss_pred hC----C-Cc--------HHHHHHHHHHHHHHHHhcCch---------hhHHHHHHHHhcCcCChhhHHHHHHHHHHHh
Q 000369 945 LG----D-NK--------KHMRECTLTVLDAWLAAVHLD---------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1610)
Q Consensus 945 l~----D-~k--------~~Vr~aa~~aL~~~~~~~~l~---------~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l 1001 (1610)
+. + .+ +.+|.+.+.-+-+++...+.. .++..+...|..+ .++.=..++..|.+.+
T Consensus 110 l~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~V 186 (330)
T PF11707_consen 110 LTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKV 186 (330)
T ss_pred hccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHh
Confidence 21 1 11 289999888888888776521 1233344444433 3444455555555433
No 315
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.42 E-value=6.9e+02 Score=26.86 Aligned_cols=105 Identities=9% Similarity=0.084 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHh--cC----chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC-Cchhh-hHHH-HHHhc
Q 000369 951 HMRECTLTVLDAWLAA--VH----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDAAH-LLKP-ASIAM 1021 (1610)
Q Consensus 951 ~Vr~aa~~aL~~~~~~--~~----l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~~~-ll~p-l~~~L 1021 (1610)
.+-..+..|+..++++ ++ -+.++.-++..+..+..++..-+.++..|...+.+.+.. ..+.+ .-.+ ++.+|
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 4445555666666665 12 234555666666643334556677788887776654431 11222 2223 88899
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 1022 ~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
++.++++..+|...+.++....+++.=......|
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999998888775433333334
No 316
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.26 E-value=4.1e+02 Score=26.72 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=41.7
Q ss_pred hHhhHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 401 l~~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
+..++|.+..+++ ++++..|.++.-.+..+..+.+=+ .+.++.++..+.+....... ...+.-|+..+++.-
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4556777777777 677777777777776666554311 12235555555555555544 344555555555443
No 317
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=22.02 E-value=1.1e+03 Score=26.03 Aligned_cols=144 Identities=23% Similarity=0.315 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHH--hhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHH
Q 000369 1203 KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL--RDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELT 1280 (1610)
Q Consensus 1203 ~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l--~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il 1280 (1610)
+.....+|-+.+++.. +..|-+-..+..--|-.++-.+ --.+-+|++.|.... +.+|++++.+.
T Consensus 33 dtsselLD~ly~l~K~--~t~~kkeA~ki~KniIKi~vKigvl~rn~qf~~eEl~~~------------~~fr~k~~~~a 98 (186)
T PF05527_consen 33 DTSSELLDELYRLLKE--YTGNKKEAEKIIKNIIKIVVKIGVLYRNNQFSDEELALA------------EKFRKKFHQLA 98 (186)
T ss_dssp HHHHHHHHHHHHHHHH--HHS-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHH------------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHH------------HHHHHHHHHHH
Confidence 4445557777777532 2345555555554444333222 112446888776532 55899999999
Q ss_pred HHHHhcCCccccHH--HHHhcccCCchhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHhhhcCCchHHHHHHHHHH
Q 000369 1281 KQIVNFYSATKTLP--YILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTL 1355 (1610)
Q Consensus 1281 ~~~~~~~~~~kv~~--~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~l---~~ia~~i~drd~~VR~aAl~~l 1355 (1610)
..+..+|-.+.-|. ||.. .-.||=+.+-.+++.|=- +|.. ..|=.+++|. ..|
T Consensus 99 mt~iSF~eV~fTfD~~~L~~--------~L~ec~~~L~~lv~~HLT-----~KS~~Ri~~vF~~f~~~---------efL 156 (186)
T PF05527_consen 99 MTAISFYEVDFTFDRNYLSK--------LLKECRDLLHQLVEPHLT-----PKSHGRIDHVFNFFSDP---------EFL 156 (186)
T ss_dssp HHHHHHTSTTS---HHHHHH--------HHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHHT-H---------HHH
T ss_pred HHHhhhcccchhhhHHHHHH--------HHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHhhCCh---------HHH
Confidence 99999998887777 4433 557888888888887743 2443 4444444433 366
Q ss_pred HHHHHhcChHHHHHhhcCCHHHHHHHHH
Q 000369 1356 ATGYKILGEDIWRYVGKLTDAQKSMLDD 1383 (1610)
Q Consensus 1356 ~~~y~~~G~~v~~~~g~l~~~~~~~l~e 1383 (1610)
..+|.-.| ..+.+++.+-...-.+||+
T Consensus 157 ~~lf~~~~-~~~~~L~~i~~~Lnklld~ 183 (186)
T PF05527_consen 157 DALFSPDE-EYRDHLGKICDGLNKLLDE 183 (186)
T ss_dssp HHHTSG---GGHHHHHHHHHHHHHHHHT
T ss_pred HHHhCccc-chHHHHHHHHHHHHHHHhC
Confidence 77776443 3667777766666666664
No 318
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=21.91 E-value=1.4e+03 Score=27.31 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred cCCChhhhhcCCchhHHHHHHHHHHHHhhcc------CCCCchhhhhh---------hhhhHhhhcCCcHHHHHHHHHHH
Q 000369 12 KKLPWEDRLLHKNWKVRNEANIDLAALCDSI------TDPKDNRIREL---------GPLFKKTVADSNAPVQDKALDAL 76 (1610)
Q Consensus 12 ~~lpl~erl~~k~WK~R~~ayeel~~~~~~~------~~~~~~~~~~~---------~~~~~k~v~DsN~~~q~~~leal 76 (1610)
.+|...++...-.-+.|..+.+|+.+.+... .++.-|.-... .+.+...+.+=|-...|.--+++
T Consensus 21 d~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~ 100 (342)
T KOG1566|consen 21 DKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVL 100 (342)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHH
Q ss_pred HHHHHHhchhhhhhhHHHH-----HHHHhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHHHH---------HHHhhcCCh
Q 000369 77 IAYLKAADADAGRYAKEVC-----DAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM---------EKAIKNKVA 142 (1610)
Q Consensus 77 ~~~v~~~~~~~~~~~~~v~-----~~lveK~l~~k~~~k~~a~~~ll~~~e~~~~~~v~~~L---------~~~l~~Knp 142 (1610)
..|-...+.+.+.....+. +.++.-.+.+...+.+.|..|=.|+.|.-.++.+...+ .....--+.
T Consensus 101 ~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F 180 (342)
T KOG1566|consen 101 QIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF 180 (342)
T ss_pred HHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch
Q ss_pred hhHHHHHHHHHHHHHHhCCCCc-----ChhhHHHh-hhhhhCCCCHHHHHHHHHHHHHHH----------HhhCCc----
Q 000369 143 KAVVPAIDVMFQALSEFGAKII-----PPKRILKM-LPELFDHQDQNVRASSKGLTLELC----------RWIGKD---- 202 (1610)
Q Consensus 143 Kv~~~~l~~l~~~l~~fG~~~~-----~~k~il~~-l~~ll~~~d~~VR~~a~~l~~ely----------~~lG~~---- 202 (1610)
++...|+..+.+++..+-..+. +...+.+. --+++.+.|=-.|..+..+++++| +|+...
T Consensus 181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLK 260 (342)
T KOG1566|consen 181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLK 260 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHH
Q ss_pred hhhHHHhhhChHHHHHHHHHHHHhcCCCCCC
Q 000369 203 PVKTILFEKMRDTMKKELEVELVNVSGTARP 233 (1610)
Q Consensus 203 ~~~~~l~~~lk~~q~kele~~f~~~~~~~~p 233 (1610)
++-..|.+.-|-+|+++.+..+-=+..+.+|
T Consensus 261 lmM~llrdkskniQ~eAFhvFKvfvAnpnK~ 291 (342)
T KOG1566|consen 261 LMMNLLRDKSKNIQLEAFHVFKVFVANPNKP 291 (342)
T ss_pred HHHHHhhCccccchHHHHHHHHHHhcCCCCC
No 319
>PRK05473 hypothetical protein; Provisional
Probab=21.90 E-value=1.7e+02 Score=27.67 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHH-HhcC-CccccHHHHHhc-----ccCCchhh------HHHHHHHHH
Q 000369 1268 NIEKVREKMRELTKQI-VNFY-SATKTLPYILEG-----LRSKNNRT------RIECVDLVG 1316 (1610)
Q Consensus 1268 ~k~~vr~~v~~il~~~-~~~~-~~~kv~~~l~~g-----l~sKn~r~------r~e~l~~l~ 1316 (1610)
.+..||+.+..+...+ .+-| |.+++..||+.| +.++|+|. |-|.|++|-
T Consensus 16 ~~~~v~eiL~~Vy~AL~EKGYNPinQiVGYllSGDPaYItsh~nAR~lIrkiERDEilEeLv 77 (86)
T PRK05473 16 KKKDVREILTTVYDALEEKGYNPINQIVGYLLSGDPAYIPRHNDARNLIRKLERDEILEELV 77 (86)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHhhhccCCCCccCCcccHHHHHHHHhHHHHHHHHH
Confidence 4556777777777777 3455 788999999965 58999987 566666663
No 320
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.64 E-value=1e+03 Score=25.59 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=13.5
Q ss_pred chHHHHHhhhcCCchHHHHHHHHHHHH
Q 000369 1331 KSLQIVASLTAERDGEIRKAALNTLAT 1357 (1610)
Q Consensus 1331 k~l~~ia~~i~drd~~VR~aAl~~l~~ 1357 (1610)
..+..|+.++...+..+|..|+..|+.
T Consensus 158 ~~v~~i~~~L~s~~~~~r~~~leiL~~ 184 (187)
T PF06371_consen 158 DSVNLIALSLDSPNIKTRKLALEILAA 184 (187)
T ss_dssp SHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345555555555555555555555543
No 321
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.48 E-value=2.1e+02 Score=28.10 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=38.5
Q ss_pred hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 437 ~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
..+..+.+.++..+..++.+-.++||.-|.+.|..+..++|+.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3455677888999999999999999999999999999999976
No 322
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=3.1e+02 Score=32.39 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=49.8
Q ss_pred HHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000369 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 969 (1610)
Q Consensus 899 ~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l 969 (1610)
.|.+.+.+.|+.|+..|+..+-.+...-+..|..+-...++.+.+.+.|.++ .+.+ ..++..+.+..++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a-~~alVnlsq~~~l 75 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPA-ATALVNLSQKEEL 75 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHH-HHHHHHHHhhHHH
Confidence 4556678899999999986555554445566788889999999999999988 4443 4556666665553
No 323
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=20.99 E-value=4.3e+02 Score=37.27 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHH
Q 000369 702 AMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1610)
Q Consensus 702 a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ 781 (1610)
+..+|..+.+.. ++ +++..+... -..++++..+....+++++.+...-.++...++..+.-. ++|.+.+||..|.+
T Consensus 490 gr~AL~nLL~~N-~d-Ll~~~IdrC-Yss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfk-lg~~~~eIR~~A~q 565 (1120)
T PF14228_consen 490 GRRALKNLLEHN-PD-LLDWVIDRC-YSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFK-LGDESSEIRSKAMQ 565 (1120)
T ss_pred HHHHHHHHHHhh-HH-HHHHHHHHh-cCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHh-hcCCcHHHHHHHHH
Confidence 344455444421 12 344444443 234688888888888888876665456666777776654 89999999999999
Q ss_pred HHHHHH
Q 000369 782 LLGALH 787 (1610)
Q Consensus 782 ll~~Ly 787 (1610)
+|..|-
T Consensus 566 LL~~Le 571 (1120)
T PF14228_consen 566 LLRALE 571 (1120)
T ss_pred HHHHHH
Confidence 987774
No 324
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.84 E-value=1.2e+03 Score=33.47 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=71.8
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh---Hh----hHHHHHHHhhcCC---hHHHHH-------
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL---VD----VVEDVKTSVKNKV---PLVRSL------- 422 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l---~~----vl~~l~~~l~~Kn---p~vR~~------- 422 (1610)
..+..++..|.+.+-|....||..|.+++-.++.. .+.+. +. ++..++++-.++| |+.+.-
T Consensus 993 ~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet 1072 (1610)
T KOG1848|consen 993 VLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTET 1072 (1610)
T ss_pred HHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhh
Confidence 34667888899999999999999888888777754 12222 12 2222333222322 444332
Q ss_pred ---HHHHHHHHHHhCChh-----HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 423 ---TLNWVTFCIETSSKA-----AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 423 ---~l~~L~~~l~~~~~~-----~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
++.-+.+++..+-+. .+.+....++..+.+...|.++++.-+|..++.++..-
T Consensus 1073 ~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 344444444433221 12244567788888999999999999999999887643
No 325
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=20.75 E-value=1.3e+02 Score=28.96 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCcccc-cchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHHHHhhcCCHHHHHHHH
Q 000369 1306 RTRIECVDLVGFLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLD 1382 (1610)
Q Consensus 1306 r~r~e~l~~l~~li~~~G~~~~~~-~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~~g~l~~~~~~~l~ 1382 (1610)
+.|..++--|+.+|..|...++.- ++.|-.++.+..| ...||+.+-++|..=....-|.-..+=...++++...|+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~ 80 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLE 80 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHH
Confidence 578889999999999999988543 4567889999997 678999999999988887766554444456666655544
No 326
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=20.68 E-value=1.4e+03 Score=29.74 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.1
Q ss_pred cccchHHHHHhhhcCCchHHHHHHHHHHHHHHHh
Q 000369 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKI 1361 (1610)
Q Consensus 1328 ~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~ 1361 (1610)
|..+.+..+...+.+.|.++|..|-.++...|.-
T Consensus 141 Ge~~~l~~~~~~l~~~dr~~Rk~a~~a~~~~~~~ 174 (549)
T TIGR02289 141 GEEKTLSQLKPYLQDPNRSTRKKAWYARSEFFAV 174 (549)
T ss_pred CEeccHHHhhHHhhCCCHHHHHHHHHHHHHHHhc
Confidence 3446788888999999999999998888766653
No 327
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.30 E-value=3.1e+02 Score=34.91 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhc-CCCCHHHHHHHHHHH
Q 000369 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACI 1036 (1610)
Q Consensus 958 ~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~l 1036 (1610)
..++.+++|++...+++.+...+... .++.+.++++||.+ ..++.-++..| .+.++++..+|.++|
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs~d--~~~~~~~ilewL~~-----------q~LI~~Li~~L~p~~~~~~q~naa~~L 87 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLISTD--KPESPTGILEWLAE-----------QNLIPRLIDLLSPSYSSDVQSNAADFL 87 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHccC--cccchHHHHHHHHH-----------hCHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46778889999888888888888755 37789999999975 33444466666 456778888888887
Q ss_pred HHHHHH
Q 000369 1037 VEILRA 1042 (1610)
Q Consensus 1037 ~~l~~~ 1042 (1610)
-+++..
T Consensus 88 ~aII~i 93 (475)
T PF04499_consen 88 KAIIRI 93 (475)
T ss_pred HHHHHH
Confidence 776653
Done!