Query 000372
Match_columns 1609
No_of_seqs 387 out of 1658
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.0 9E-10 2E-14 114.9 7.0 85 909-997 38-123 (153)
2 KOG0956 PHD finger protein AF1 98.9 8.4E-10 1.8E-14 132.7 4.2 111 720-831 7-188 (900)
3 KOG1512 PHD Zn-finger protein 98.8 9.3E-10 2E-14 122.6 1.5 89 718-821 258-361 (381)
4 PF00583 Acetyltransf_1: Acety 98.8 1.9E-08 4.1E-13 89.5 9.6 74 919-993 2-83 (83)
5 PF13508 Acetyltransf_7: Acety 98.8 3.1E-08 6.7E-13 89.6 11.0 76 914-994 4-79 (79)
6 KOG1244 Predicted transcriptio 98.8 1.2E-09 2.7E-14 121.2 1.8 92 717-822 223-330 (336)
7 PF13673 Acetyltransf_10: Acet 98.8 3.9E-08 8.4E-13 92.5 10.4 74 913-992 44-117 (117)
8 PTZ00330 acetyltransferase; Pr 98.6 1.2E-07 2.6E-12 92.8 8.2 84 914-998 53-142 (147)
9 PRK10314 putative acyltransfer 98.6 2.2E-07 4.9E-12 95.4 9.8 79 918-997 53-134 (153)
10 PRK03624 putative acetyltransf 98.5 5.2E-07 1.1E-11 86.0 8.6 81 914-996 46-129 (140)
11 PRK10146 aminoalkylphosphonic 98.5 4.8E-07 1E-11 88.4 8.4 80 916-996 50-137 (144)
12 PLN02706 glucosamine 6-phospha 98.4 9.3E-07 2E-11 87.8 10.1 82 914-996 54-143 (150)
13 PRK07922 N-acetylglutamate syn 98.4 8.8E-07 1.9E-11 92.2 9.5 78 917-997 49-127 (169)
14 KOG4443 Putative transcription 98.4 5E-08 1.1E-12 118.2 -0.4 116 650-801 36-181 (694)
15 cd02169 Citrate_lyase_ligase C 98.4 1.2E-06 2.6E-11 100.0 9.5 76 915-996 8-83 (297)
16 PRK09491 rimI ribosomal-protei 98.3 2.4E-06 5.3E-11 84.7 9.9 85 911-997 38-125 (146)
17 PRK07757 acetyltransferase; Pr 98.3 2.6E-06 5.7E-11 84.7 9.7 78 917-997 45-122 (152)
18 PF13527 Acetyltransf_9: Acety 98.3 3.8E-06 8.2E-11 80.9 10.5 79 914-995 42-127 (127)
19 TIGR01575 rimI ribosomal-prote 98.3 3.2E-06 7E-11 80.0 9.7 80 916-997 34-116 (131)
20 KOG4299 PHD Zn-finger protein 98.3 1.9E-07 4.1E-12 113.1 1.3 47 718-764 253-306 (613)
21 PLN02825 amino-acid N-acetyltr 98.3 2.4E-06 5.3E-11 103.7 10.2 80 916-997 410-490 (515)
22 KOG4443 Putative transcription 98.3 2.7E-07 5.8E-12 112.1 2.0 93 717-823 17-118 (694)
23 PRK10975 TDP-fucosamine acetyl 98.2 5E-06 1.1E-10 87.2 10.1 84 912-996 101-187 (194)
24 TIGR01890 N-Ac-Glu-synth amino 98.2 4.2E-06 9.1E-11 98.8 10.3 79 917-997 326-405 (429)
25 TIGR02382 wecD_rffC TDP-D-fuco 98.2 6.5E-06 1.4E-10 86.4 10.0 80 916-996 102-184 (191)
26 TIGR00124 cit_ly_ligase [citra 98.2 6.5E-06 1.4E-10 95.3 10.0 79 913-997 31-109 (332)
27 TIGR03827 GNAT_ablB putative b 98.1 7.4E-06 1.6E-10 90.8 9.5 84 913-997 158-245 (266)
28 PRK05279 N-acetylglutamate syn 98.1 8.6E-06 1.9E-10 96.4 10.5 79 917-997 338-417 (441)
29 KOG1244 Predicted transcriptio 98.1 5.6E-07 1.2E-11 100.6 0.5 79 648-761 245-329 (336)
30 COG5141 PHD zinc finger-contai 98.1 1E-06 2.2E-11 104.1 2.1 56 715-770 190-258 (669)
31 KOG0825 PHD Zn-finger protein 98.1 1.1E-06 2.4E-11 107.7 2.3 44 718-761 215-264 (1134)
32 PRK12308 bifunctional arginino 98.1 9.1E-06 2E-10 100.2 10.1 79 916-997 506-584 (614)
33 PHA00673 acetyltransferase dom 98.1 2E-05 4.3E-10 83.2 10.0 83 914-997 56-146 (154)
34 KOG1473 Nucleosome remodeling 98.0 4.8E-07 1E-11 114.0 -3.3 146 590-761 240-389 (1414)
35 PRK10140 putative acetyltransf 98.0 3.7E-05 8E-10 76.3 10.0 86 913-1000 51-144 (162)
36 TIGR03448 mycothiol_MshD mycot 98.0 2.6E-05 5.6E-10 85.9 9.8 86 911-997 198-288 (292)
37 PRK09831 putative acyltransfer 97.9 2.8E-05 6.1E-10 78.0 8.0 72 916-998 56-127 (147)
38 PF13420 Acetyltransf_4: Acety 97.9 0.00011 2.4E-09 73.0 10.8 76 920-997 58-139 (155)
39 cd04301 NAT_SF N-Acyltransfera 97.8 8.2E-05 1.8E-09 60.3 7.8 60 917-976 3-64 (65)
40 PRK13688 hypothetical protein; 97.8 6.9E-05 1.5E-09 78.5 9.2 74 919-998 51-134 (156)
41 TIGR02406 ectoine_EctA L-2,4-d 97.8 7.2E-05 1.6E-09 76.8 9.2 82 914-996 40-127 (157)
42 KOG0955 PHD finger protein BR1 97.8 1E-05 2.3E-10 103.9 3.8 57 716-772 217-286 (1051)
43 PF15446 zf-PHD-like: PHD/FYVE 97.8 1.1E-05 2.4E-10 85.9 3.4 82 720-801 1-142 (175)
44 COG0456 RimI Acetyltransferase 97.8 5.6E-05 1.2E-09 76.2 7.9 76 923-999 72-156 (177)
45 TIGR03448 mycothiol_MshD mycot 97.8 0.0001 2.2E-09 81.3 9.8 80 915-997 48-128 (292)
46 KOG1512 PHD Zn-finger protein 97.8 8.8E-06 1.9E-10 91.7 1.5 75 647-758 277-357 (381)
47 TIGR03103 trio_acet_GNAT GNAT- 97.8 9.8E-05 2.1E-09 90.5 10.3 85 912-997 122-217 (547)
48 PF00628 PHD: PHD-finger; Int 97.7 1.2E-05 2.5E-10 68.9 0.8 42 720-761 1-49 (51)
49 KOG0954 PHD finger protein [Ge 97.7 1.9E-05 4E-10 97.3 2.3 86 716-801 269-365 (893)
50 smart00249 PHD PHD zinc finger 97.6 3.2E-05 6.9E-10 63.1 2.7 41 720-760 1-47 (47)
51 PRK01346 hypothetical protein; 97.6 0.00018 3.9E-09 83.8 9.5 80 916-998 50-137 (411)
52 PHA01807 hypothetical protein 97.5 0.00023 5.1E-09 74.6 7.8 74 914-987 54-134 (153)
53 PRK10562 putative acetyltransf 97.5 0.00033 7.1E-09 69.9 8.1 74 917-997 52-125 (145)
54 KOG3139 N-acetyltransferase [G 97.5 0.00046 1E-08 73.6 9.5 92 913-1005 57-154 (165)
55 PRK10514 putative acetyltransf 97.5 0.00041 8.8E-09 68.4 8.6 72 918-997 55-126 (145)
56 KOG3396 Glucosamine-phosphate 97.5 0.00031 6.8E-09 73.3 8.0 114 863-996 21-143 (150)
57 TIGR01686 FkbH FkbH-like domai 97.5 0.00041 9E-09 79.3 9.6 81 913-995 231-319 (320)
58 PRK15130 spermidine N1-acetylt 97.5 0.00065 1.4E-08 70.3 10.1 81 915-997 59-145 (186)
59 KOG4323 Polycomb-like PHD Zn-f 97.4 6.6E-05 1.4E-09 90.0 2.8 101 719-827 84-228 (464)
60 PF13302 Acetyltransf_3: Acety 97.4 0.001 2.2E-08 64.6 10.5 79 914-993 59-142 (142)
61 KOG0383 Predicted helicase [Ge 97.4 3.7E-05 8E-10 96.0 0.2 48 715-762 44-93 (696)
62 KOG4299 PHD Zn-finger protein 97.4 0.00011 2.4E-09 90.0 3.6 44 718-761 47-93 (613)
63 PF13523 Acetyltransf_8: Acety 97.3 0.0015 3.2E-08 65.5 10.7 87 910-997 45-141 (152)
64 PF08445 FR47: FR47-like prote 97.3 0.0015 3.3E-08 62.1 9.6 75 921-997 6-82 (86)
65 KOG1973 Chromatin remodeling p 97.3 9.6E-05 2.1E-09 83.8 1.8 42 719-761 222-266 (274)
66 TIGR03585 PseH pseudaminic aci 97.3 0.0016 3.5E-08 64.7 10.1 79 917-998 55-139 (156)
67 TIGR01211 ELP3 histone acetylt 97.2 0.00076 1.7E-08 82.7 8.7 86 911-997 412-516 (522)
68 PRK10809 ribosomal-protein-S5- 97.2 0.0014 3E-08 68.5 9.3 83 913-997 77-166 (194)
69 COG3393 Predicted acetyltransf 97.2 0.001 2.2E-08 75.5 8.5 83 913-996 177-261 (268)
70 COG2153 ElaA Predicted acyltra 97.0 0.0022 4.7E-08 67.9 8.6 83 915-998 52-137 (155)
71 PRK10151 ribosomal-protein-L7/ 97.0 0.0038 8.3E-08 64.3 9.8 77 919-997 73-155 (179)
72 COG1247 Sortase and related ac 96.9 0.0036 7.8E-08 67.4 9.2 110 910-1023 49-166 (169)
73 KOG0383 Predicted helicase [Ge 96.7 0.00098 2.1E-08 83.7 3.8 69 735-820 1-91 (696)
74 COG3153 Predicted acetyltransf 96.6 0.0088 1.9E-07 64.6 9.2 136 864-1022 8-151 (171)
75 COG5034 TNG2 Chromatin remodel 96.5 0.0011 2.5E-08 74.6 1.6 44 717-761 220-268 (271)
76 PF13718 GNAT_acetyltr_2: GNAT 96.2 0.0072 1.6E-07 66.5 6.0 70 939-1009 92-190 (196)
77 cd04718 BAH_plant_2 BAH, or Br 96.1 0.0037 8.1E-08 66.2 2.7 31 739-769 1-33 (148)
78 PF08444 Gly_acyl_tr_C: Aralky 96.0 0.014 3E-07 57.6 5.9 75 917-996 3-79 (89)
79 PF12568 DUF3749: Acetyltransf 95.9 0.037 8E-07 57.7 9.1 81 911-996 38-124 (128)
80 smart00249 PHD PHD zinc finger 95.7 0.0085 1.8E-07 48.9 3.0 44 762-817 2-45 (47)
81 PF00628 PHD: PHD-finger; Int 95.7 0.0037 7.9E-08 53.7 0.7 48 762-821 2-49 (51)
82 COG1670 RimL Acetyltransferase 95.5 0.074 1.6E-06 53.2 9.0 86 911-997 64-158 (187)
83 KOG0957 PHD finger protein [Ge 95.4 0.006 1.3E-07 73.6 1.1 44 717-760 543-595 (707)
84 COG0454 WecD Histone acetyltra 95.3 0.022 4.7E-07 48.0 4.1 44 943-992 87-130 (156)
85 KOG1973 Chromatin remodeling p 95.3 0.0068 1.5E-07 69.2 1.3 36 780-822 229-267 (274)
86 KOG3216 Diamine acetyltransfer 95.1 0.13 2.8E-06 55.4 9.9 90 907-997 48-146 (163)
87 PF12746 GNAT_acetyltran: GNAT 95.1 0.1 2.2E-06 59.9 9.9 76 919-996 171-246 (265)
88 KOG0825 PHD Zn-finger protein 95.1 0.0089 1.9E-07 75.0 1.4 52 758-823 214-266 (1134)
89 KOG2488 Acetyltransferase (GNA 94.8 0.061 1.3E-06 59.3 6.7 84 913-997 93-182 (202)
90 KOG1245 Chromatin remodeling c 94.7 0.0068 1.5E-07 81.5 -0.9 45 717-761 1107-1156(1404)
91 KOG4323 Polycomb-like PHD Zn-f 94.5 0.01 2.3E-07 71.9 0.2 43 719-761 169-222 (464)
92 COG1444 Predicted P-loop ATPas 94.4 0.052 1.1E-06 69.4 5.7 67 941-1009 535-605 (758)
93 PF13831 PHD_2: PHD-finger; PD 94.3 0.0059 1.3E-07 50.9 -1.8 34 728-761 2-36 (36)
94 COG2388 Predicted acetyltransf 94.0 0.19 4.1E-06 50.5 7.6 73 911-987 15-87 (99)
95 COG3053 CitC Citrate lyase syn 93.7 0.22 4.8E-06 58.1 8.3 79 913-997 37-115 (352)
96 KOG3397 Acetyltransferases [Ge 93.2 0.13 2.8E-06 56.3 5.3 77 919-997 63-141 (225)
97 PF14542 Acetyltransf_CG: GCN5 92.9 0.42 9.2E-06 45.5 7.6 56 918-974 4-59 (78)
98 KOG0957 PHD finger protein [Ge 91.7 0.058 1.3E-06 65.6 0.5 52 719-770 120-193 (707)
99 KOG3138 Predicted N-acetyltran 91.7 0.21 4.5E-06 55.1 4.6 63 934-997 86-152 (187)
100 PF13480 Acetyltransf_6: Acety 91.6 0.95 2.1E-05 44.0 8.6 62 913-975 71-132 (142)
101 COG4552 Eis Predicted acetyltr 90.6 0.34 7.4E-06 57.7 5.3 84 907-997 35-127 (389)
102 KOG4144 Arylalkylamine N-acety 90.4 0.23 4.9E-06 53.8 3.3 59 938-997 102-161 (190)
103 KOG3235 Subunit of the major N 89.6 0.84 1.8E-05 49.8 6.7 83 920-1002 49-140 (193)
104 COG3981 Predicted acetyltransf 87.2 1.2 2.5E-05 49.0 6.0 69 913-983 70-143 (174)
105 PF07227 DUF1423: Protein of u 86.0 0.87 1.9E-05 55.7 4.8 71 755-831 124-203 (446)
106 KOG0955 PHD finger protein BR1 83.6 0.65 1.4E-05 61.7 2.5 35 780-821 233-267 (1051)
107 COG1243 ELP3 Histone acetyltra 83.2 1 2.2E-05 55.5 3.6 64 930-997 446-509 (515)
108 COG5034 TNG2 Chromatin remodel 82.9 0.69 1.5E-05 53.2 2.0 35 781-822 232-269 (271)
109 PF06852 DUF1248: Protein of u 81.9 7 0.00015 43.3 9.0 84 913-997 47-137 (181)
110 KOG3234 Acetyltransferase, (GN 81.5 1.6 3.5E-05 47.6 3.9 55 939-994 71-128 (173)
111 PF01429 MBD: Methyl-CpG bindi 80.7 1.4 3.1E-05 42.0 3.0 58 404-465 11-71 (77)
112 KOG1245 Chromatin remodeling c 79.0 0.81 1.8E-05 62.6 1.0 50 762-825 1111-1160(1404)
113 TIGR03694 exosort_acyl putativ 77.8 13 0.00027 42.4 9.7 92 902-994 45-195 (241)
114 KOG0954 PHD finger protein [Ge 77.3 1.2 2.7E-05 56.9 1.8 46 762-821 274-319 (893)
115 cd01396 MeCP2_MBD MeCP2, MBD1, 76.3 3.5 7.7E-05 39.9 4.2 57 404-465 7-65 (77)
116 KOG0956 PHD finger protein AF1 74.1 1.4 3.1E-05 55.9 1.2 37 779-822 18-56 (900)
117 COG5141 PHD zinc finger-contai 74.0 1.4 3E-05 54.4 1.0 34 780-820 207-240 (669)
118 KOG1081 Transcription factor N 69.7 3.7 8E-05 50.9 3.3 45 716-761 87-131 (463)
119 PF13832 zf-HC5HC2H_2: PHD-zin 68.5 3.1 6.8E-05 41.2 2.0 68 720-801 2-88 (110)
120 PF01342 SAND: SAND domain; I 67.7 1.3 2.9E-05 43.1 -0.8 33 656-689 41-74 (82)
121 cd00122 MBD MeCP2, MBD1, MBD2, 66.7 8.2 0.00018 35.6 4.1 40 404-443 6-47 (62)
122 KOG1473 Nucleosome remodeling 66.5 1.1 2.3E-05 59.5 -2.2 45 717-761 427-477 (1414)
123 cd04718 BAH_plant_2 BAH, or Br 66.5 2.8 6E-05 45.2 1.2 25 792-821 1-25 (148)
124 cd04264 DUF619-NAGS DUF619 dom 63.5 13 0.00029 37.6 5.2 46 921-966 16-63 (99)
125 KOG1701 Focal adhesion adaptor 62.0 1.7 3.8E-05 52.9 -1.4 74 720-800 336-430 (468)
126 PF01853 MOZ_SAS: MOZ/SAS fami 61.9 21 0.00045 40.1 6.8 84 868-968 26-111 (188)
127 KOG4628 Predicted E3 ubiquitin 60.8 5.6 0.00012 47.9 2.4 44 719-763 230-276 (348)
128 PF15446 zf-PHD-like: PHD/FYVE 60.7 14 0.0003 41.0 5.1 19 730-748 124-142 (175)
129 TIGR03019 pepcterm_femAB FemAB 58.5 33 0.00071 40.0 8.0 82 915-997 197-281 (330)
130 PF02474 NodA: Nodulation prot 58.4 14 0.00029 41.3 4.6 50 937-987 85-134 (196)
131 smart00258 SAND SAND domain. 57.8 4.4 9.6E-05 39.3 0.8 40 649-689 22-65 (73)
132 COG5628 Predicted acetyltransf 54.9 54 0.0012 35.1 8.0 83 917-1004 41-131 (143)
133 PF14446 Prok-RING_1: Prokaryo 54.9 6 0.00013 36.6 1.1 29 719-747 6-38 (54)
134 KOG0804 Cytoplasmic Zn-finger 51.3 6.5 0.00014 48.6 0.9 40 718-761 175-218 (493)
135 PLN03238 probable histone acet 50.4 26 0.00056 41.6 5.4 61 909-969 125-187 (290)
136 KOG1246 DNA-binding protein ju 50.2 16 0.00034 48.7 4.2 52 718-769 155-210 (904)
137 PRK13834 putative autoinducer 49.4 1.1E+02 0.0024 34.3 10.0 93 902-995 42-163 (207)
138 PF13831 PHD_2: PHD-finger; PD 49.1 7.5 0.00016 32.9 0.7 31 781-816 2-32 (36)
139 PTZ00064 histone acetyltransfe 48.3 20 0.00043 45.2 4.3 80 869-965 331-412 (552)
140 PLN03239 histone acetyltransfe 47.2 24 0.00051 42.9 4.6 29 939-967 215-243 (351)
141 PLN00104 MYST -like histone ac 46.7 19 0.00041 44.9 3.8 77 869-962 253-331 (450)
142 KOG2747 Histone acetyltransfer 44.7 20 0.00044 44.0 3.6 22 940-961 263-284 (396)
143 PF14446 Prok-RING_1: Prokaryo 44.3 13 0.00029 34.4 1.6 34 759-800 5-38 (54)
144 PF01233 NMT: Myristoyl-CoA:pr 43.9 85 0.0018 34.9 7.7 55 921-975 87-148 (162)
145 PF05301 Mec-17: Touch recepto 41.5 36 0.00078 36.1 4.3 62 945-1013 54-116 (120)
146 KOG4135 Predicted phosphogluco 41.2 48 0.001 36.6 5.3 58 938-996 108-169 (185)
147 KOG1829 Uncharacterized conser 40.0 14 0.0003 47.2 1.4 56 756-827 503-563 (580)
148 KOG2036 Predicted P-loop ATPas 39.9 26 0.00056 45.8 3.6 52 890-966 592-643 (1011)
149 KOG3576 Ovo and related transc 39.4 8.7 0.00019 43.6 -0.4 63 728-799 115-189 (267)
150 PF07897 DUF1675: Protein of u 38.4 14 0.00031 43.5 1.1 31 649-679 252-283 (284)
151 PRK00756 acyltransferase NodA; 38.3 43 0.00094 37.4 4.5 38 937-975 85-122 (196)
152 COG1107 Archaea-specific RecJ- 36.9 21 0.00046 45.7 2.2 24 718-741 68-91 (715)
153 PF11793 FANCL_C: FANCL C-term 36.5 16 0.00034 34.7 0.9 28 719-746 3-38 (70)
154 cd04265 DUF619-NAGS-U DUF619 d 36.3 51 0.0011 33.6 4.4 41 926-966 22-63 (99)
155 PF05502 Dynactin_p62: Dynacti 35.9 26 0.00056 44.0 2.8 30 729-761 4-33 (483)
156 PF10497 zf-4CXXC_R1: Zinc-fin 34.8 20 0.00043 36.7 1.3 36 735-770 35-81 (105)
157 PF13832 zf-HC5HC2H_2: PHD-zin 34.3 18 0.0004 35.9 1.0 30 718-747 55-87 (110)
158 PF12861 zf-Apc11: Anaphase-pr 32.3 14 0.0003 37.0 -0.2 40 721-761 35-78 (85)
159 PF13880 Acetyltransf_13: ESCO 31.6 38 0.00082 32.8 2.5 27 940-966 8-34 (70)
160 KOG2779 N-myristoyl transferas 31.3 2.2E+02 0.0047 35.4 9.0 80 909-988 130-224 (421)
161 PRK04023 DNA polymerase II lar 31.2 31 0.00067 46.6 2.4 34 717-761 625-658 (1121)
162 COG3818 Predicted acetyltransf 30.4 97 0.0021 33.7 5.4 52 947-998 94-149 (167)
163 PF13901 DUF4206: Domain of un 30.2 36 0.00078 38.1 2.4 34 720-760 154-195 (202)
164 KOG3612 PHD Zn-finger protein 30.0 37 0.0008 43.2 2.7 45 717-761 59-106 (588)
165 PF12261 T_hemolysin: Thermost 27.1 1.1E+02 0.0024 34.2 5.4 73 919-996 41-141 (179)
166 KOG0269 WD40 repeat-containing 26.7 33 0.0007 45.1 1.5 42 749-800 763-810 (839)
167 KOG3581 Creatine kinases [Ener 25.6 76 0.0016 38.2 4.0 158 840-1029 50-212 (363)
168 PF00765 Autoind_synth: Autoin 25.5 4.2E+02 0.0091 29.5 9.5 90 904-995 36-153 (182)
169 PF13771 zf-HC5HC2H: PHD-like 25.4 33 0.00072 32.8 1.0 30 718-747 36-68 (90)
170 smart00391 MBD Methyl-CpG bind 25.4 90 0.002 30.5 3.9 35 404-438 8-45 (77)
171 PF04377 ATE_C: Arginine-tRNA- 24.8 2.8E+02 0.006 29.6 7.6 58 917-975 43-100 (128)
172 COG0143 MetG Methionyl-tRNA sy 24.0 35 0.00075 43.7 1.1 36 753-799 125-171 (558)
173 PLN03086 PRLI-interacting fact 23.9 27 0.00058 44.8 0.1 32 647-681 405-436 (567)
174 KOG1632 Uncharacterized PHD Zn 23.6 46 0.001 40.3 1.9 61 782-846 74-136 (345)
175 KOG2752 Uncharacterized conser 23.0 59 0.0013 39.3 2.6 22 780-801 145-167 (345)
176 COG5027 SAS2 Histone acetyltra 22.8 43 0.00094 40.8 1.5 25 936-960 261-285 (395)
177 PF07943 PBP5_C: Penicillin-bi 22.0 98 0.0021 29.4 3.4 29 920-948 61-89 (91)
178 PF03358 FMN_red: NADPH-depend 21.9 1.8E+02 0.004 29.8 5.6 71 940-1010 1-75 (152)
179 smart00547 ZnF_RBZ Zinc finger 21.7 56 0.0012 25.2 1.4 9 753-761 1-9 (26)
180 PF13639 zf-RING_2: Ring finge 21.5 7.9 0.00017 32.8 -3.5 40 719-761 1-44 (44)
181 KOG2535 RNA polymerase II elon 21.4 97 0.0021 38.0 3.9 49 947-996 497-546 (554)
182 PRK10001 D-alanyl-D-alanine ca 21.0 1.6E+02 0.0035 36.5 5.8 46 920-966 346-391 (400)
183 KOG1044 Actin-binding LIM Zn-f 20.6 1E+02 0.0023 39.8 4.1 10 657-666 85-94 (670)
184 KOG2114 Vacuolar assembly/sort 20.3 39 0.00085 44.9 0.5 40 718-762 840-880 (933)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.96 E-value=9e-10 Score=114.94 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=76.3
Q ss_pred cccceEEEEEeeCCeEEEEEEEE-eeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000372 909 NYSGFYTAILERGDEIISAASIR-FHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1609)
Q Consensus 909 df~GFYtaVLE~~geVVSaAsLR-V~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1609)
++..|+++ |++|.|||||.++ +.+.+++||..|||+|+||++|+|..||..|+..++.+|+++||+-+. -..-|-
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 46677765 8899999999999 899999999999999999999999999999999999999999997775 334566
Q ss_pred hccCceeccH
Q 000372 988 RVFGFTSLEE 997 (1609)
Q Consensus 988 ~KFGF~~v~~ 997 (1609)
.++||+.++.
T Consensus 114 ~~~GF~~vd~ 123 (153)
T COG1246 114 AERGFTRVDK 123 (153)
T ss_pred HHcCCeECcc
Confidence 6999999986
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.89 E-value=8.4e-10 Score=132.75 Aligned_cols=111 Identities=27% Similarity=0.698 Sum_probs=80.9
Q ss_pred cccccCCCC-----CcEeeCC--CCCcCCCCcCCCCCCCCCCCCCcccc---------ccccCCCCCCCCC---------
Q 000372 720 TCGICGDGG-----DLICCDG--CPSTFHQSCLDIQMLPPGDWHCPNCT---------CKFCGLAGEDDAE--------- 774 (1609)
Q Consensus 720 vC~VCGDGG-----dLLcCDg--CprAFH~~CLdpp~VP~GdW~Cp~C~---------Ck~CGk~~~ds~e--------- 774 (1609)
-|.||.|.. -|++||+ |..+.|+.|+++..||.|+|||..|. |.+|--.++.-+.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 588998752 3999996 99999999999999999999999996 7777422211000
Q ss_pred ------------------------------------------CCCCCCCceecCC--cchhhccccchhcccccccCCCC
Q 000372 775 ------------------------------------------GDDTTTSALLPCA--MCEKKYHKLCMQEMDALSDNLTG 810 (1609)
Q Consensus 775 ------------------------------------------Ed~~S~~~LL~Cd--QCERaYHv~CL~~~d~~ple~~p 810 (1609)
+.....+..|.|+ -|.+.||+.|.+....++++...
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 0111224567885 49999999999987777776532
Q ss_pred -Ccc-eeeCccchhhHHHHHhHh
Q 000372 811 -LVT-SFCGRKCQELSEHLQKYL 831 (1609)
Q Consensus 811 -sg~-WFCc~~CkeI~e~LQKLL 831 (1609)
.++ -|| .+|+.+|.+|.+--
T Consensus 167 ~~dNVKYC-GYCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 167 ISDNVKYC-GYCKYHFSKLKKSP 188 (900)
T ss_pred ccccceec-hhHHHHHHHhhcCC
Confidence 233 455 69999999987653
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.83 E-value=9.3e-10 Score=122.61 Aligned_cols=89 Identities=22% Similarity=0.512 Sum_probs=72.1
Q ss_pred cccccccCCCC---------CcEeeCCCCCcCCCCcCCCCC-----CCCCCCCCcccc-ccccCCCCCCCCCCCCCCCCc
Q 000372 718 DDTCGICGDGG---------DLICCDGCPSTFHQSCLDIQM-----LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSA 782 (1609)
Q Consensus 718 DDvC~VCGDGG---------dLLcCDgCprAFH~~CLdpp~-----VP~GdW~Cp~C~-Ck~CGk~~~ds~eEd~~S~~~ 782 (1609)
...|.+|-++- -+|+|..|.-+||++|+..+. +-...|.|..|+ |.+|+.+.... .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~---------E 328 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIES---------E 328 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccch---------h
Confidence 35788886652 399999999999999998642 456889999998 99999987653 4
Q ss_pred eecCCcchhhccccchhcccccccCCCCCcceeeCccch
Q 000372 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 783 LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~Ck 821 (1609)
+++|+.|+|.||..|....+ .|.+.|+|--.|.
T Consensus 329 ~~FCD~CDRG~HT~CVGL~~------lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 329 HLFCDVCDRGPHTLCVGLQD------LPRGEWICDMRCR 361 (381)
T ss_pred eeccccccCCCCcccccccc------ccCccchhhhHHH
Confidence 89999999999999998532 3679999966564
No 4
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.83 E-value=1.9e-08 Score=89.48 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=67.6
Q ss_pred eeCCeEEEEEEEEeecc-----ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHhhhcc
Q 000372 919 ERGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTWTRVF 990 (1609)
Q Consensus 919 E~~geVVSaAsLRV~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tWT~KF 990 (1609)
+.+|+|||++.+++... ..+.|-.++|.++|||||+|+.|++.+++.++..|+..|++-..++ +..+|. ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67999999999999887 4999999999999999999999999999999999999998877655 558888 89
Q ss_pred Cce
Q 000372 991 GFT 993 (1609)
Q Consensus 991 GF~ 993 (1609)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.82 E-value=3.1e-08 Score=89.57 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=65.6
Q ss_pred EEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCce
Q 000372 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFT 993 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~ 993 (1609)
+.++++.+++|||++.+.-.+. .+.|..|||.++|||||+|+.||..+.+.+.. ..+++-+.+.++.+|+ ++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTEE
T ss_pred EEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcCC
Confidence 5667799999999999965554 89999999999999999999999999888854 5567778899999999 89998
Q ss_pred e
Q 000372 994 S 994 (1609)
Q Consensus 994 ~ 994 (1609)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.81 E-value=1.2e-09 Score=121.16 Aligned_cols=92 Identities=28% Similarity=0.712 Sum_probs=73.4
Q ss_pred ccccccccCC----------CCCcEeeCCCCCcCCCCcCCCC-----CCCCCCCCCcccc-ccccCCCCCCCCCCCCCCC
Q 000372 717 NDDTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTT 780 (1609)
Q Consensus 717 NDDvC~VCGD----------GGdLLcCDgCprAFH~~CLdpp-----~VP~GdW~Cp~C~-Ck~CGk~~~ds~eEd~~S~ 780 (1609)
+...|-.|-. +.+|+.|..|+++-|+.||... .|-...|+|.+|+ |.+||....+
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend--------- 293 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND--------- 293 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC---------
Confidence 4457888843 3469999999999999999853 3667899999999 8899876654
Q ss_pred CceecCCcchhhccccchhcccccccCCCCCcceeeCccchh
Q 000372 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1609)
Q Consensus 781 ~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~Cke 822 (1609)
..+++|+-|+|.||.+||.+ ++...|++.|-| ..|.+
T Consensus 294 dqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~ 330 (336)
T KOG1244|consen 294 DQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLE 330 (336)
T ss_pred ceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHH
Confidence 35999999999999999986 455667899988 45544
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.78 E-value=3.9e-08 Score=92.55 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=64.6
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1609)
...+|++.+|+|||.+.++ .-++|..+.|.|.|||+|+|++||..+++.++. |++.|++.+...+..+|. ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 4567789999999999986 345699999999999999999999999999988 999999999999999999 6998
No 8
>PTZ00330 acetyltransferase; Provisional
Probab=98.60 E-value=1.2e-07 Score=92.79 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=72.5
Q ss_pred EEEEEeeCCeEEEEEEEEee------ccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000372 914 YTAILERGDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1609)
+.++.+.+|++||.+.+.+. +...++|--+.+.++|||||+|+.|+..+++.++..|+.+|++.+...+..+|+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 44555688999999988653 223577888999999999999999999999999999999999999999999998
Q ss_pred hccCceeccHH
Q 000372 988 RVFGFTSLEES 998 (1609)
Q Consensus 988 ~KFGF~~v~~e 998 (1609)
++||..+...
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 8999998753
No 9
>PRK10314 putative acyltransferase; Provisional
Probab=98.57 E-value=2.2e-07 Score=95.40 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred EeeCCeEEEEEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhc-CccEEEecchhhHHHHhhhccCcee
Q 000372 918 LERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 918 LE~~geVVSaAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
+..++++||+|.++..+. ..++|--|||.++|||||+|+.||..+++.++.. +...|+|.|...+..+|. +|||.+
T Consensus 53 ~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~~ 131 (153)
T PRK10314 53 GWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFIP 131 (153)
T ss_pred EEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCEE
Confidence 346899999998876543 3578999999999999999999999999988875 788999999988999999 799999
Q ss_pred ccH
Q 000372 995 LEE 997 (1609)
Q Consensus 995 v~~ 997 (1609)
+.+
T Consensus 132 ~g~ 134 (153)
T PRK10314 132 VTE 134 (153)
T ss_pred CCC
Confidence 986
No 10
>PRK03624 putative acetyltransferase; Provisional
Probab=98.47 E-value=5.2e-07 Score=86.03 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=67.2
Q ss_pred EEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhhhcc
Q 000372 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVF 990 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT~KF 990 (1609)
+.+|+..++++||.+.+...+ ..+.+..|+|.+.|||||+|+.|+..++..++.+|++++.+-.. +.+..+|. ++
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 344567789999999886543 44778889999999999999999999999999999999877655 44778886 89
Q ss_pred Cceecc
Q 000372 991 GFTSLE 996 (1609)
Q Consensus 991 GF~~v~ 996 (1609)
||+..+
T Consensus 124 GF~~~~ 129 (140)
T PRK03624 124 GYEEQD 129 (140)
T ss_pred CCcccc
Confidence 999765
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.47 E-value=4.8e-07 Score=88.36 Aligned_cols=80 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred EEEeeCCeEEEEEEEEeec-----cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhh
Q 000372 916 AILERGDEIISAASIRFHG-----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWT 987 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G-----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT 987 (1609)
+|++.++++||++.+++.. ...++|--++|.++|||||+|+.||..+++.++..|...+.|-.. ..+..+|.
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 3457889999999997642 235788889999999999999999999999999999999988755 47889999
Q ss_pred hccCceecc
Q 000372 988 RVFGFTSLE 996 (1609)
Q Consensus 988 ~KFGF~~v~ 996 (1609)
++||....
T Consensus 130 -~~Gf~~~~ 137 (144)
T PRK10146 130 -REGYEQSH 137 (144)
T ss_pred -HcCCchhh
Confidence 89997664
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.45 E-value=9.3e-07 Score=87.76 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred EEEEEee--CCeEEEEEEEEeec------cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHH
Q 000372 914 YTAILER--GDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1609)
Q Consensus 914 YtaVLE~--~geVVSaAsLRV~G------~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~t 985 (1609)
|.++.+. +++|||.+.+++.. ..++.|-.|+|.++|||||+|+.|+.++++.++.+|+++|++...++...+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3344444 68999999886432 245677779999999999999999999999999999999999988888888
Q ss_pred hhhccCceecc
Q 000372 986 WTRVFGFTSLE 996 (1609)
Q Consensus 986 WT~KFGF~~v~ 996 (1609)
|. ++||....
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 87 89998753
No 13
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.42 E-value=8.8e-07 Score=92.16 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=69.1
Q ss_pred EEe-eCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 917 ILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 917 VLE-~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
|++ .++++||.+.+.+.+.+.++|-.+++.+.|||||+|+.|++++++.++..|+++|++-.. ...+|+ |+||..+
T Consensus 49 va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~~ 125 (169)
T PRK07922 49 VAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVEI 125 (169)
T ss_pred EEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEEC
Confidence 556 889999999998888889999999999999999999999999999999999999986543 467888 8999997
Q ss_pred cH
Q 000372 996 EE 997 (1609)
Q Consensus 996 ~~ 997 (1609)
..
T Consensus 126 ~~ 127 (169)
T PRK07922 126 DG 127 (169)
T ss_pred cc
Confidence 54
No 14
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.39 E-value=5e-08 Score=118.20 Aligned_cols=116 Identities=22% Similarity=0.569 Sum_probs=80.8
Q ss_pred eeeCCCCceeecceeeeccCCcccccceeeeccCCcccchhhhhhccccccccccCCcccCCCCCCcccccccccCCCC-
Q 000372 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGG- 728 (1609)
Q Consensus 650 I~C~CC~kvFSpSeFEaHAGsk~rqPY~NIyLedGrSLLqCqIeAwnkqe~sEk~Gf~~V~~dgdd~NDDvC~VCGDGG- 728 (1609)
..|.+|.+.+|+.+....+- +..|..||.++.| .+|..|+..|
T Consensus 36 ~ac~~c~~~yH~~cvt~~~~--------~~~l~~gWrC~~c----------------------------rvCe~c~~~gD 79 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWAQ--------HAVLSGGWRCPSC----------------------------RVCEACGTTGD 79 (694)
T ss_pred hhhhhhcccCCcchhhHHHh--------HHHhcCCcccCCc----------------------------eeeeeccccCC
Confidence 48999999999888744222 2234456766655 3688887554
Q ss_pred --CcEeeCCCCCcCCCCcCCCCC--CCCCCCCCcccc-ccccCCCCCC--------CCCCCC-C---------------C
Q 000372 729 --DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGED--------DAEGDD-T---------------T 779 (1609)
Q Consensus 729 --dLLcCDgCprAFH~~CLdpp~--VP~GdW~Cp~C~-Ck~CGk~~~d--------s~eEd~-~---------------S 779 (1609)
.+++|+.|..+||.||..|+. +|.|.|+|++|. |..|...... ..+... . .
T Consensus 80 ~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cPvc~~~Y~~~e 159 (694)
T KOG4443|consen 80 PKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCPVCLIVYQDSE 159 (694)
T ss_pred cccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCchHHHhhhhcc
Confidence 599999999999999999974 899999999997 7777643221 000000 0 0
Q ss_pred CCceecCCcchhhccccchhcc
Q 000372 780 TSALLPCAMCEKKYHKLCMQEM 801 (1609)
Q Consensus 780 ~~~LL~CdQCERaYHv~CL~~~ 801 (1609)
.-.++.|++|.+|-|..|..-.
T Consensus 160 ~~~~~~c~~c~rwsh~~c~~~s 181 (694)
T KOG4443|consen 160 SLPMVCCSICQRWSHGGCDGIS 181 (694)
T ss_pred chhhHHHHHhcccccCCCCccc
Confidence 1235788999999999997643
No 15
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.36 E-value=1.2e-06 Score=99.95 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=68.2
Q ss_pred EEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000372 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 915 taVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
..|.+.+++|||++.+.- .+|..|||.+.|||||+|+.||.++++.++..|+.+++|-+...+..+|. ++||..
T Consensus 8 ~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~ 81 (297)
T cd02169 8 VGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKE 81 (297)
T ss_pred EEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEE
Confidence 344567899999998842 46899999999999999999999999999999999999999999999998 899998
Q ss_pred cc
Q 000372 995 LE 996 (1609)
Q Consensus 995 v~ 996 (1609)
+.
T Consensus 82 ~~ 83 (297)
T cd02169 82 LA 83 (297)
T ss_pred ec
Confidence 87
No 16
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.34 E-value=2.4e-06 Score=84.66 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=70.0
Q ss_pred cceEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecc---hhhHHHHhh
Q 000372 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTWT 987 (1609)
Q Consensus 911 ~GFYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA---~~ea~~tWT 987 (1609)
.+|+..+++.++++||.+.++.+... +++-.|+|.+.|||||+|+.|+..+++.+..+|+..|++.. -..+..+|.
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 35555566788999999999766544 56778899999999999999999999999999999988754 345677777
Q ss_pred hccCceeccH
Q 000372 988 RVFGFTSLEE 997 (1609)
Q Consensus 988 ~KFGF~~v~~ 997 (1609)
++||+.+..
T Consensus 117 -k~Gf~~~~~ 125 (146)
T PRK09491 117 -SLGFNEVTI 125 (146)
T ss_pred -HcCCEEeee
Confidence 899997764
No 17
>PRK07757 acetyltransferase; Provisional
Probab=98.32 E-value=2.6e-06 Score=84.73 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=68.1
Q ss_pred EEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000372 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
++..++++||.+.+.+.+...++|-.|+|.++|||+|+|+.|+..+++.+..+|+.++++-. .+..+|. |+||+.+.
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEcc
Confidence 34578999999999998989999999999999999999999999999999999999986533 2456776 89999987
Q ss_pred H
Q 000372 997 E 997 (1609)
Q Consensus 997 ~ 997 (1609)
.
T Consensus 122 ~ 122 (152)
T PRK07757 122 K 122 (152)
T ss_pred c
Confidence 6
No 18
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.32 E-value=3.8e-06 Score=80.89 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=63.6
Q ss_pred EEEEEeeCCeEEEEEEEEe-----ecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHh
Q 000372 914 YTAILERGDEIISAASIRF-----HGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV-----~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tW 986 (1609)
+++|...+++|||.+.+-. .|. .++-|=-|||.++|||||+++.||.++++.++.-|+..+++-+ ....+|
T Consensus 42 ~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y 119 (127)
T PF13527_consen 42 RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFY 119 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHH
T ss_pred cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhh
Confidence 4566677999999887633 354 5799999999999999999999999999999999999999876 335677
Q ss_pred hhccCceec
Q 000372 987 TRVFGFTSL 995 (1609)
Q Consensus 987 T~KFGF~~v 995 (1609)
. +|||..+
T Consensus 120 ~-~~G~~~~ 127 (127)
T PF13527_consen 120 R-RFGFEYA 127 (127)
T ss_dssp H-HTTEEEE
T ss_pred h-cCCCEEC
Confidence 6 8999864
No 19
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.31 E-value=3.2e-06 Score=80.04 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred EEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEec---chhhHHHHhhhccCc
Q 000372 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP---AIAELMHTWTRVFGF 992 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLP---A~~ea~~tWT~KFGF 992 (1609)
+++..++++||.+.+++.. ....+-.++|.++|||||+|+.|+.++++.+...|+.++++. .-+.+..+|+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 3445689999999987644 456788899999999999999999999999999999999984 4556788898 8999
Q ss_pred eeccH
Q 000372 993 TSLEE 997 (1609)
Q Consensus 993 ~~v~~ 997 (1609)
+.+..
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98764
No 20
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=1.9e-07 Score=113.09 Aligned_cols=47 Identities=51% Similarity=1.363 Sum_probs=42.4
Q ss_pred cccccccCCCCCc---EeeCCCCCcCCCCcCCCC----CCCCCCCCCccccccc
Q 000372 718 DDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQ----MLPPGDWHCPNCTCKF 764 (1609)
Q Consensus 718 DDvC~VCGDGGdL---LcCDgCprAFH~~CLdpp----~VP~GdW~Cp~C~Ck~ 764 (1609)
.++|..|+..|.. ||||+||++||++||+|| .+|.|.|+|+.|.|+.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4699999999876 999999999999999997 3899999999999764
No 21
>PLN02825 amino-acid N-acetyltransferase
Probab=98.28 E-value=2.4e-06 Score=103.67 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=68.8
Q ss_pred EEEeeCCeEEEEEEEEeecc-ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000372 916 AILERGDEIISAASIRFHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
+|++.+++|||+|++..+.. +.+||=.|||.++|||+|+|++||+.+|+.++.+|+++|++-. ..+..+|. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 34689999999999876654 6899999999999999999999999999999999999999865 34556555 899999
Q ss_pred ccH
Q 000372 995 LEE 997 (1609)
Q Consensus 995 v~~ 997 (1609)
...
T Consensus 488 ~~~ 490 (515)
T PLN02825 488 CSI 490 (515)
T ss_pred eCh
Confidence 774
No 22
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.28 E-value=2.7e-07 Score=112.07 Aligned_cols=93 Identities=29% Similarity=0.828 Sum_probs=71.0
Q ss_pred ccccccccCCCC-----CcEeeCCCCCcCCCCcCCCCC---CCCCCCCCcccc-ccccCCCCCCCCCCCCCCCCceecCC
Q 000372 717 NDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCA 787 (1609)
Q Consensus 717 NDDvC~VCGDGG-----dLLcCDgCprAFH~~CLdpp~---VP~GdW~Cp~C~-Ck~CGk~~~ds~eEd~~S~~~LL~Cd 787 (1609)
...+|.+|+..| .|+.|..|...||.+|+.... +-.+.|.|+.|+ |..|+..+. ...+++|.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD---------~~kf~~Ck 87 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD---------PKKFLLCK 87 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC---------cccccccc
Confidence 356788997654 599999999999999998542 223459999998 888984432 23589999
Q ss_pred cchhhccccchhcccccccCCCCCcceeeCccchhh
Q 000372 788 MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1609)
Q Consensus 788 QCERaYHv~CL~~~d~~ple~~psg~WFCc~~CkeI 823 (1609)
.|+-.||.+|+.| ++...+.++|+|. .|..+
T Consensus 88 ~cDvsyh~yc~~P----~~~~v~sg~~~ck-k~~~c 118 (694)
T KOG4443|consen 88 RCDVSYHCYCQKP----PNDKVPSGPWLCK-KCTRC 118 (694)
T ss_pred cccccccccccCC----ccccccCcccccH-HHHhh
Confidence 9999999999986 3445678999995 44333
No 23
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.24 E-value=5e-06 Score=87.18 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=70.6
Q ss_pred ceEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhhh
Q 000372 912 GFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTR 988 (1609)
Q Consensus 912 GFYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT~ 988 (1609)
.++.++.+.++++||.+.+..+....++|-.+++.+.|||||+|+.|+..+++.++..|+.+|++-.. +.+..+|.
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye- 179 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI- 179 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-
Confidence 34444556678999999998776667899999999999999999999999999999999999987644 45778887
Q ss_pred ccCceecc
Q 000372 989 VFGFTSLE 996 (1609)
Q Consensus 989 KFGF~~v~ 996 (1609)
++||....
T Consensus 180 k~Gf~~~~ 187 (194)
T PRK10975 180 RSGANIES 187 (194)
T ss_pred HCCCeEeE
Confidence 89999754
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.22 E-value=4.2e-06 Score=98.84 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=69.5
Q ss_pred EEeeCCeEEEEEEEEeec-cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 917 ILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
|++.++++||++.+..+. ...+||-.|+|.++|||||+|+.||+.+++.++..|..+|++-+. .+..+|. ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 457899999999998774 468999999999999999999999999999999999999887654 4678887 8999999
Q ss_pred cH
Q 000372 996 EE 997 (1609)
Q Consensus 996 ~~ 997 (1609)
..
T Consensus 404 g~ 405 (429)
T TIGR01890 404 SV 405 (429)
T ss_pred Ch
Confidence 75
No 25
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.20 E-value=6.5e-06 Score=86.41 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=69.2
Q ss_pred EEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhhhccCc
Q 000372 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVFGF 992 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT~KFGF 992 (1609)
++++.++++||.+.++.+....+++=.+++.++|||||+|+.|+.++++.+..+|+.+|++... +.++.+|. |+||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 3456789999999998776667899999999999999999999999999999999999998754 45788888 8999
Q ss_pred eecc
Q 000372 993 TSLE 996 (1609)
Q Consensus 993 ~~v~ 996 (1609)
+...
T Consensus 181 ~~~~ 184 (191)
T TIGR02382 181 NIES 184 (191)
T ss_pred cccc
Confidence 8654
No 26
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.16 E-value=6.5e-06 Score=95.33 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=71.0
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1609)
.|++++..+++|||++++ .|. .|.-|||.++|||+|+|+.||.+|++.+...|+.+|+|-+.+....++. ++||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcCC
Confidence 466777889999999997 343 4889999999999999999999999999999999999999998888887 8999
Q ss_pred eeccH
Q 000372 993 TSLEE 997 (1609)
Q Consensus 993 ~~v~~ 997 (1609)
..+..
T Consensus 105 ~~i~~ 109 (332)
T TIGR00124 105 KTLAE 109 (332)
T ss_pred EEeee
Confidence 99886
No 27
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.14 E-value=7.4e-06 Score=90.78 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=69.3
Q ss_pred eEEEEEeeCCeEEEEEEEEee-ccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhH---HHHhhh
Q 000372 913 FYTAILERGDEIISAASIRFH-GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAEL---MHTWTR 988 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~-G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea---~~tWT~ 988 (1609)
.+.++++.++++||++++.+. +...+||--++|.|+|||||+|+.||..+++.++..|+.+|++.+.... ..++.
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 334455679999999998653 3467999999999999999999999999999999999999998877654 45665
Q ss_pred ccCceeccH
Q 000372 989 VFGFTSLEE 997 (1609)
Q Consensus 989 KFGF~~v~~ 997 (1609)
++||+....
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 899997643
No 28
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.14 E-value=8.6e-06 Score=96.36 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=68.9
Q ss_pred EEeeCCeEEEEEEEEeec-cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 917 ILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
+++.++++||++.+..+. ...++|-.|+|.++|||||+|++||.++++.++..|+.+|++-. ..+..+|. +|||..+
T Consensus 338 va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~~ 415 (441)
T PRK05279 338 VIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVPV 415 (441)
T ss_pred EEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEEC
Confidence 457899999999876543 36799999999999999999999999999999999999998755 45788887 8999998
Q ss_pred cH
Q 000372 996 EE 997 (1609)
Q Consensus 996 ~~ 997 (1609)
..
T Consensus 416 g~ 417 (441)
T PRK05279 416 DV 417 (441)
T ss_pred Ch
Confidence 75
No 29
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.13 E-value=5.6e-07 Score=100.60 Aligned_cols=79 Identities=28% Similarity=0.709 Sum_probs=57.7
Q ss_pred CCeeeCCCCceeecceeeeccCCc-ccccceeeeccCCcccchhhhhhccccccccccCCcccCCCCCCcccccccccCC
Q 000372 648 DGIHCGCCSKILTVSKFEIHAGSK-LRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGD 726 (1609)
Q Consensus 648 dGI~C~CC~kvFSpSeFEaHAGsk-~rqPY~NIyLedGrSLLqCqIeAwnkqe~sEk~Gf~~V~~dgdd~NDDvC~VCGD 726 (1609)
+-|+|.-|++.-||+++.--|.|- .-+-| .|.+.+| ..|.+||.
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~y-------rwqciec----------------------------k~csicgt 289 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTY-------RWQCIEC----------------------------KYCSICGT 289 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhh-------eeeeeec----------------------------ceeccccC
Confidence 357999999999998875555542 11111 1222233 46899986
Q ss_pred CC---CcEeeCCCCCcCCCCcCCCCC--CCCCCCCCcccc
Q 000372 727 GG---DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT 761 (1609)
Q Consensus 727 GG---dLLcCDgCprAFH~~CLdpp~--VP~GdW~Cp~C~ 761 (1609)
.. +||+||.|++.||+|||.|++ .|+|.|.|..|.
T Consensus 290 senddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 290 SENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 54 599999999999999999986 588999998774
No 30
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.11 E-value=1e-06 Score=104.06 Aligned_cols=56 Identities=43% Similarity=1.001 Sum_probs=47.3
Q ss_pred CcccccccccCCCC-----CcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc--------ccccCCCCC
Q 000372 715 DPNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGE 770 (1609)
Q Consensus 715 d~NDDvC~VCGDGG-----dLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~--------Ck~CGk~~~ 770 (1609)
+.=++.|.+|.... -+++||+|.-+.|+.|.+++-+|+|.|+|..|. |.+|-...+
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dG 258 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDG 258 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCC
Confidence 34567899997543 399999999999999999999999999999996 888865544
No 31
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.10 E-value=1.1e-06 Score=107.65 Aligned_cols=44 Identities=36% Similarity=0.966 Sum_probs=38.0
Q ss_pred cccccccCCCC---CcEeeCCCCCc-CCCCcCCCCC--CCCCCCCCcccc
Q 000372 718 DDTCGICGDGG---DLICCDGCPST-FHQSCLDIQM--LPPGDWHCPNCT 761 (1609)
Q Consensus 718 DDvC~VCGDGG---dLLcCDgCprA-FH~~CLdpp~--VP~GdW~Cp~C~ 761 (1609)
..-|.+|+... -||+||.|..+ ||.|||+|+. +|.++|||++|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 34689997543 49999999999 9999999975 899999999996
No 32
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.10 E-value=9.1e-06 Score=100.24 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=69.8
Q ss_pred EEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
+|++.+|+|||++.+.++....++|-.|+|.|.|||||+|+.||+.+++.++..|+.+|++-.. +..+|. ||||+.+
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 3567899999999998877778999999999999999999999999999999999999987543 457887 8999988
Q ss_pred cH
Q 000372 996 EE 997 (1609)
Q Consensus 996 ~~ 997 (1609)
..
T Consensus 583 ~~ 584 (614)
T PRK12308 583 SK 584 (614)
T ss_pred Cc
Confidence 85
No 33
>PHA00673 acetyltransferase domain containing protein
Probab=98.05 E-value=2e-05 Score=83.18 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=72.0
Q ss_pred EEEEEeeCCeEEEEEEEEeec------cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh--HHHH
Q 000372 914 YTAILERGDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMHT 985 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~G------~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e--a~~t 985 (1609)
..+|.+.+|+|||++.+.+.. ...+.|=.|-|.+.|||||+|++||..+++.++..|...|.|.|+|+ .+.|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 344556799999999987743 36778999999999999999999999999999999999999999986 7899
Q ss_pred hhhccCceeccH
Q 000372 986 WTRVFGFTSLEE 997 (1609)
Q Consensus 986 WT~KFGF~~v~~ 997 (1609)
|. +.|++....
T Consensus 136 y~-~~g~~~~~~ 146 (154)
T PHA00673 136 LP-AAGYRETNR 146 (154)
T ss_pred HH-hCCchhhch
Confidence 99 788876543
No 34
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=98.01 E-value=4.8e-07 Score=113.96 Aligned_cols=146 Identities=25% Similarity=0.522 Sum_probs=84.0
Q ss_pred cccCCCCCCCCCCCCccCCCCcch--hhhhhccCceeccceEEEeeccccceeeeeeeecCCeeeCCCCceeecceeeec
Q 000372 590 IRNSNVGPNSETDGFVPYAGKLTL--LSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIH 667 (1609)
Q Consensus 590 vR~S~k~~nsesdg~vP~~~kRTV--LSWLID~G~V~~~~KV~Y~n~k~~kv~LeG~ItrdGI~C~CC~kvFSpSeFEaH 667 (1609)
.|.--.+.+..+++|.|.+.|.+| .-+|||.-+|++ +|+-|++.++-.-.--...|+ .|..|
T Consensus 240 LrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPe--------------vLrqY~ea~~~ad~~v~~~~n--~fv~~ 303 (1414)
T KOG1473|consen 240 LRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPE--------------VLRQYFEADKHADGPVWDIFN--PFVVE 303 (1414)
T ss_pred HHHHhhhhhhcccccCccccccceeeeeehhccccHHH--------------HHHHHHHhccccCcchhhhhc--ccccc
Confidence 455555556678999999999766 567888888763 344444444410000000111 23222
Q ss_pred cCCcccccceeeeccCCcccchhhhhhccccccccccCCcccCCCCCCcccccccccCCCCCcEeeCCCCCcCCCCcCCC
Q 000372 668 AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDI 747 (1609)
Q Consensus 668 AGsk~rqPY~NIyLedGrSLLqCqIeAwnkqe~sEk~Gf~~V~~dgdd~NDDvC~VCGDGGdLLcCDgCprAFH~~CLdp 747 (1609)
--- ||.-| ++-.-++|.....+..-...+ ..+..++.-.-++.|.+|.+.|+++||..||+.||..|..+
T Consensus 304 ~eY----~~~pv--~~klkILQ~L~Dq~l~~~s~R----~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~h 373 (1414)
T KOG1473|consen 304 DEY----PYRPV--SNKLKILQFLCDQFLTVNSLR----DEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFH 373 (1414)
T ss_pred ccc----cccch--hhhHHHHHHHHHHHHHHHHHH----HHHhcccceeecccccccCcccceeecccCCceEEeeecCC
Confidence 221 22221 112223333222111100000 00112334456789999999999999999999999999998
Q ss_pred CC--CCCCCCCCcccc
Q 000372 748 QM--LPPGDWHCPNCT 761 (1609)
Q Consensus 748 p~--VP~GdW~Cp~C~ 761 (1609)
|. +|...|.|.-|.
T Consensus 374 P~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 374 PRFAVPSAFWECEVCN 389 (1414)
T ss_pred ccccCCCccchhhhhh
Confidence 75 889999999886
No 35
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=97.98 E-value=3.7e-05 Score=76.29 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=67.5
Q ss_pred eEEEEEeeCCeEEEEEEEEeec----cceeeeeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecch---hhHHH
Q 000372 913 FYTAILERGDEIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAI---AELMH 984 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~---~ea~~ 984 (1609)
++.+|.+.++++||.+.+.... ...+|+- +++.++|||||+|+.|+..++..+.. +|+.++++... ..+..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3455667889999999987531 2456654 89999999999999999999999888 79888776654 45677
Q ss_pred HhhhccCceeccHHHH
Q 000372 985 TWTRVFGFTSLEESLK 1000 (1609)
Q Consensus 985 tWT~KFGF~~v~~eek 1000 (1609)
++. ++||+......+
T Consensus 130 ~y~-k~GF~~~g~~~~ 144 (162)
T PRK10140 130 VYK-KYGFEIEGTGKK 144 (162)
T ss_pred HHH-HCCCEEEeeccc
Confidence 887 899998766443
No 36
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.98 E-value=2.6e-05 Score=85.89 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=69.0
Q ss_pred cceEEEEEeeCCeEEEEEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchh---hHHHH
Q 000372 911 SGFYTAILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA---ELMHT 985 (1609)
Q Consensus 911 ~GFYtaVLE~~geVVSaAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~---ea~~t 985 (1609)
.++|.++...++++||.+.+++... .+++|-.++|.++|||||+|+.|+..+++.++..|+..|++...+ .++.+
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3556554323689999887776543 467888899999999999999999999999999999998876643 57888
Q ss_pred hhhccCceeccH
Q 000372 986 WTRVFGFTSLEE 997 (1609)
Q Consensus 986 WT~KFGF~~v~~ 997 (1609)
|. ++||+.+..
T Consensus 278 y~-k~GF~~~~~ 288 (292)
T TIGR03448 278 YE-KLGFTVAEV 288 (292)
T ss_pred HH-HcCCEEccc
Confidence 87 899998654
No 37
>PRK09831 putative acyltransferase; Provisional
Probab=97.92 E-value=2.8e-05 Score=77.96 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred EEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
+|+..+|++||.+.+.. +.+..++|.++|||||+|+.||..+++.+.. |.+.+...++.+|. ++||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 34478899999988732 4577899999999999999999999998876 45556677889998 8999998
Q ss_pred cHH
Q 000372 996 EES 998 (1609)
Q Consensus 996 ~~e 998 (1609)
...
T Consensus 125 g~~ 127 (147)
T PRK09831 125 KQQ 127 (147)
T ss_pred ecc
Confidence 763
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.86 E-value=0.00011 Score=73.01 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred eCCeEEEEEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHH-hhcCccEEEecch---hhHHHHhhhccCce
Q 000372 920 RGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAI---AELMHTWTRVFGFT 993 (1609)
Q Consensus 920 ~~geVVSaAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L-~sLGVerLvLPA~---~ea~~tWT~KFGF~ 993 (1609)
.+|++||.+.++-.-. ..|++-++ +.+.||++|+|+.|+..|++.+ ..+|+++|.+-.. ..++.+|+ ++||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~-v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~-~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIY-VSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK-KLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEE-EEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-HTTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeE-EChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-hCCCE
Confidence 6999999999985433 67777744 4499999999999999999999 9999999986544 45889999 89999
Q ss_pred eccH
Q 000372 994 SLEE 997 (1609)
Q Consensus 994 ~v~~ 997 (1609)
..-.
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 39
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.83 E-value=8.2e-05 Score=60.32 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=53.9
Q ss_pred EEeeCCeEEEEEEEEeec--cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe
Q 000372 917 ILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL 976 (1609)
++..++++||.+.+.... ...++|-.++|.+.|||||+++.|+..+.+.+...|..++++
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 445779999999987765 478999999999999999999999999999999999999885
No 40
>PRK13688 hypothetical protein; Provisional
Probab=97.83 E-value=6.9e-05 Score=78.48 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=57.4
Q ss_pred eeCCeEEEEEEEEee----------ccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhh
Q 000372 919 ERGDEIISAASIRFH----------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR 988 (1609)
Q Consensus 919 E~~geVVSaAsLRV~----------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~ 988 (1609)
..++++||++.+... ..+.++|--|+|.++|||||+|++||..+++. ++. +.+.+...+..+|.
T Consensus 51 ~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~- 124 (156)
T PRK13688 51 YYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL- 124 (156)
T ss_pred EECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH-
Confidence 468899998887542 24668999999999999999999999876543 443 33445667889999
Q ss_pred ccCceeccHH
Q 000372 989 VFGFTSLEES 998 (1609)
Q Consensus 989 KFGF~~v~~e 998 (1609)
|+||..+...
T Consensus 125 k~GF~~~~~~ 134 (156)
T PRK13688 125 KLGFTPVEYK 134 (156)
T ss_pred hCCCEEeEEe
Confidence 8999988754
No 41
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.83 E-value=7.2e-05 Score=76.84 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=64.4
Q ss_pred EEEEEe-eCCeEEEEEEEEe--eccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhh
Q 000372 914 YTAILE-RGDEIISAASIRF--HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWT 987 (1609)
Q Consensus 914 YtaVLE-~~geVVSaAsLRV--~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT 987 (1609)
+++|.+ .++++||.+.+.. ...+.+.+-.|||.+.|||||+|+.|+..+++.++..++.+|.+-.. ..+..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 344556 5789999886533 33366888899999999999999999999999999989888876543 45677786
Q ss_pred hccCceecc
Q 000372 988 RVFGFTSLE 996 (1609)
Q Consensus 988 ~KFGF~~v~ 996 (1609)
||||+...
T Consensus 120 -k~G~~~~~ 127 (157)
T TIGR02406 120 -ALARRRGV 127 (157)
T ss_pred -HhCcccCC
Confidence 89987743
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.82 E-value=1e-05 Score=103.93 Aligned_cols=57 Identities=39% Similarity=0.973 Sum_probs=48.7
Q ss_pred cccccccccCCCC-----CcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc--------ccccCCCCCCC
Q 000372 716 PNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGEDD 772 (1609)
Q Consensus 716 ~NDDvC~VCGDGG-----dLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~--------Ck~CGk~~~ds 772 (1609)
..|.+|.||.++. ..++||.|..++|+.|.+.+.+|+|.|.|..|. |.+|-..++.+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAF 286 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAF 286 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcc
Confidence 4577999998764 489999999999999999999999999999996 88887665443
No 43
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.82 E-value=1.1e-05 Score=85.85 Aligned_cols=82 Identities=29% Similarity=0.726 Sum_probs=58.5
Q ss_pred cccccCC------CCCcEeeCCCCCcCCCCcCCCCC--------CCCC--CCCCcccc---------------ccccCCC
Q 000372 720 TCGICGD------GGDLICCDGCPSTFHQSCLDIQM--------LPPG--DWHCPNCT---------------CKFCGLA 768 (1609)
Q Consensus 720 vC~VCGD------GGdLLcCDgCprAFH~~CLdpp~--------VP~G--dW~Cp~C~---------------Ck~CGk~ 768 (1609)
+|.+|+. -|.||+|.+|..+||..||++-. |-.+ -.+|.+|. |..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4777753 25699999999999999999732 2223 36799996 8888766
Q ss_pred CCCC-------------------CCCCCCC----------CCceecCCcchhhccccchhcc
Q 000372 769 GEDD-------------------AEGDDTT----------TSALLPCAMCEKKYHKLCMQEM 801 (1609)
Q Consensus 769 ~~ds-------------------~eEd~~S----------~~~LL~CdQCERaYHv~CL~~~ 801 (1609)
+... +.+|++. .+.|+.|..|.|+||...|++.
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 5321 1122221 2568999999999999999874
No 44
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.81 E-value=5.6e-05 Score=76.24 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=62.5
Q ss_pred eEEEEEEEEe-eccc----eeeeeeeeeeccccccChhHHHHHHHHHHHhhcCc-cEEEecchhh---HHHHhhhccCce
Q 000372 923 EIISAASIRF-HGTQ----LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKV-EKLIIPAIAE---LMHTWTRVFGFT 993 (1609)
Q Consensus 923 eVVSaAsLRV-~G~d----lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGV-erLvLPA~~e---a~~tWT~KFGF~ 993 (1609)
+++|....++ .|.. .++|-.|||.|+|||||+|++|+..+++.+..-+. +.++|-...+ |+.+|. ++||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 5888888853 4432 78999999999999999999999999999999886 7877777654 677777 79999
Q ss_pred eccHHH
Q 000372 994 SLEESL 999 (1609)
Q Consensus 994 ~v~~ee 999 (1609)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987543
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.77 E-value=0.0001 Score=81.26 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=62.7
Q ss_pred EEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhhhccCce
Q 000372 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGFT 993 (1609)
Q Consensus 915 taVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-~ea~~tWT~KFGF~ 993 (1609)
.+|...+++|||.+.+.......+++-.|+|.|+|||||+|+.||..+++.+. +--.|++... ..+..++. ++||+
T Consensus 48 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf~ 124 (292)
T TIGR03448 48 HLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGLV 124 (292)
T ss_pred EEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCCE
Confidence 44456789999999988875555788889999999999999999999999865 3334555543 45777777 89998
Q ss_pred eccH
Q 000372 994 SLEE 997 (1609)
Q Consensus 994 ~v~~ 997 (1609)
.+..
T Consensus 125 ~~~~ 128 (292)
T TIGR03448 125 PTRE 128 (292)
T ss_pred EccE
Confidence 8764
No 46
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.76 E-value=8.8e-06 Score=91.75 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=57.4
Q ss_pred cCCeeeCCCCceeecceeeec---cCCcccccceeeeccCCcccchhhhhhccccccccccCCcccCCCCCCcccccccc
Q 000372 647 RDGIHCGCCSKILTVSKFEIH---AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGI 723 (1609)
Q Consensus 647 rdGI~C~CC~kvFSpSeFEaH---AGsk~rqPY~NIyLedGrSLLqCqIeAwnkqe~sEk~Gf~~V~~dgdd~NDDvC~V 723 (1609)
...|+|.-|....||++.+.. ++.-..-| |++.+ ...|.+
T Consensus 277 ~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~---------W~C~~----------------------------C~lC~I 319 (381)
T KOG1512|consen 277 NSWIVCKPCATRPHPYCVAMIPELVGQYKTYF---------WKCSS----------------------------CELCRI 319 (381)
T ss_pred ccceeecccccCCCCcchhcCHHHHhHHhhcc---------hhhcc----------------------------cHhhhc
Confidence 357899999999999987543 22211122 22222 347999
Q ss_pred cCCC---CCcEeeCCCCCcCCCCcCCCCCCCCCCCCCc
Q 000372 724 CGDG---GDLICCDGCPSTFHQSCLDIQMLPPGDWHCP 758 (1609)
Q Consensus 724 CGDG---GdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp 758 (1609)
|+.+ .++++||.|++.||++|+++..+|.|.|.|-
T Consensus 320 C~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 320 CLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred cCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 9875 4699999999999999999999999999996
No 47
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.75 E-value=9.8e-05 Score=90.47 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=67.3
Q ss_pred ceEEEEEee--CCeEEEEEEEEee------ccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---h
Q 000372 912 GFYTAILER--GDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---A 980 (1609)
Q Consensus 912 GFYtaVLE~--~geVVSaAsLRV~------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ 980 (1609)
+++.+|++. +|+|||.+.+..+ +...++|--|+|.++|||||+|+.||..+++.++..|+.+++|... .
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 344444453 7999999875322 2234788889999999999999999999999999999999876544 5
Q ss_pred hHHHHhhhccCceeccH
Q 000372 981 ELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 981 ea~~tWT~KFGF~~v~~ 997 (1609)
.+..+|. ++||..++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 6888997 899998874
No 48
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.69 E-value=1.2e-05 Score=68.91 Aligned_cols=42 Identities=48% Similarity=1.270 Sum_probs=35.0
Q ss_pred cccccCC---CCCcEeeCCCCCcCCCCcCCCCC----CCCCCCCCcccc
Q 000372 720 TCGICGD---GGDLICCDGCPSTFHQSCLDIQM----LPPGDWHCPNCT 761 (1609)
Q Consensus 720 vC~VCGD---GGdLLcCDgCprAFH~~CLdpp~----VP~GdW~Cp~C~ 761 (1609)
+|.+|+. .+++|.|+.|.+.||..|++++. .+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778876 56799999999999999999863 344589999986
No 49
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.66 E-value=1.9e-05 Score=97.27 Aligned_cols=86 Identities=28% Similarity=0.677 Sum_probs=63.8
Q ss_pred cccccccccCCC-----CCcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc------ccccCCCCCCCCCCCCCCCCcee
Q 000372 716 PNDDTCGICGDG-----GDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALL 784 (1609)
Q Consensus 716 ~NDDvC~VCGDG-----GdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~------Ck~CGk~~~ds~eEd~~S~~~LL 784 (1609)
.++..|-+|..+ .+|++||.|....|+.|.++..+|.|.|.|..|. |.+|-..++...-....+.+..+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 367789999754 4699999999999999999999999999999997 88998877754422222334556
Q ss_pred cCCcchhhccccchhcc
Q 000372 785 PCAMCEKKYHKLCMQEM 801 (1609)
Q Consensus 785 ~CdQCERaYHv~CL~~~ 801 (1609)
.|...--..-+.|...+
T Consensus 349 sCALwIPEVsie~~ekm 365 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKM 365 (893)
T ss_pred eeeeccceeeccCHhhc
Confidence 66555445555565544
No 50
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK01346 hypothetical protein; Provisional
Probab=97.62 E-value=0.00018 Score=83.79 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=66.2
Q ss_pred EEEeeCCeEEEEEEEEee------cc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000372 916 AILERGDEIISAASIRFH------GT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV~------G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1609)
++...+++|||.+.+..+ |. ..+.|-.|||.|+|||||+|++||..+++.++..|+..++|-+.. ..+|.
T Consensus 50 ~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~ 127 (411)
T PRK01346 50 LGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYG 127 (411)
T ss_pred EEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHh
Confidence 445688999999886432 32 578999999999999999999999999999999999988887654 35677
Q ss_pred hccCceeccHH
Q 000372 988 RVFGFTSLEES 998 (1609)
Q Consensus 988 ~KFGF~~v~~e 998 (1609)
+|||......
T Consensus 128 -r~Gf~~~~~~ 137 (411)
T PRK01346 128 -RFGYGPATYS 137 (411)
T ss_pred -hCCCeeccce
Confidence 8999988763
No 52
>PHA01807 hypothetical protein
Probab=97.53 E-value=0.00023 Score=74.59 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=57.4
Q ss_pred EEEEEeeCCeEEEEEEEEeecc----ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHh
Q 000372 914 YTAILERGDEIISAASIRFHGT----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTW 986 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~G~----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tW 986 (1609)
+.++++.++++||.+.+..... .+.+|--|.|.++|||+|+|+.||+++++.++..|+..|++-...+ |+.++
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355677999999999854332 2333444689999999999999999999999999999998777655 44555
Q ss_pred h
Q 000372 987 T 987 (1609)
Q Consensus 987 T 987 (1609)
.
T Consensus 134 ~ 134 (153)
T PHA01807 134 R 134 (153)
T ss_pred H
Confidence 5
No 53
>PRK10562 putative acetyltransferase; Provisional
Probab=97.49 E-value=0.00033 Score=69.93 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=56.3
Q ss_pred EEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000372 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
++..++++||.+.+... ..+-.++|.++|||||+|+.||..+++.+..+.+ .+...-+.+..+|. |+||+.+.
T Consensus 52 v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~~~ 124 (145)
T PRK10562 52 VWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRIVD 124 (145)
T ss_pred EEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEEcc
Confidence 44567899999887422 4567799999999999999999999997654322 23344556788888 89999987
Q ss_pred H
Q 000372 997 E 997 (1609)
Q Consensus 997 ~ 997 (1609)
.
T Consensus 125 ~ 125 (145)
T PRK10562 125 S 125 (145)
T ss_pred c
Confidence 4
No 54
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.49 E-value=0.00046 Score=73.63 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=71.3
Q ss_pred eEEEEEeeCCeEEEEEEEEeec---cceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHh
Q 000372 913 FYTAILERGDEIISAASIRFHG---TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTW 986 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G---~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tW 986 (1609)
|..+.++.++..|||+.....- ..-++|--+||.++|||||||++|+..+.+.++..|...+||-.... |+..+
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 4455444444357776665432 24589999999999999999999999999999999999999988764 66666
Q ss_pred hhccCceeccHHHHHhhhc
Q 000372 987 TRVFGFTSLEESLKQEMRS 1005 (1609)
Q Consensus 987 T~KFGF~~v~~eek~~l~~ 1005 (1609)
. +|||...-...+.++..
T Consensus 137 ~-sLGF~r~~r~~~YYlng 154 (165)
T KOG3139|consen 137 E-SLGFKRDKRLFRYYLNG 154 (165)
T ss_pred H-hcCceEecceeEEEECC
Confidence 6 89999987666655543
No 55
>PRK10514 putative acetyltransferase; Provisional
Probab=97.49 E-value=0.00041 Score=68.45 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=56.4
Q ss_pred EeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccH
Q 000372 918 LERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 918 LE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~~ 997 (1609)
.+.++++||.+.+.- .++-.+++.++|||||+|++|++.+++.+.. +...+.+.-..+..+|. |+||+.+..
T Consensus 55 ~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~~ 126 (145)
T PRK10514 55 VDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTGR 126 (145)
T ss_pred EecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEecc
Confidence 356789999888742 3455799999999999999999999997643 34444555567889997 899999765
No 56
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.49 E-value=0.00031 Score=73.31 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=88.1
Q ss_pred cccccchhhHhHhhhhhcccccccCCCCCccccceeecCCCCCCcccccc-eEEEEEee--CCeEEEEEEEEe-----ec
Q 000372 863 RVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSG-FYTAILER--GDEIISAASIRF-----HG 934 (1609)
Q Consensus 863 ~vEcNSKLAvALtIM~ECFdPIID~rSGrDLIpdMVYNrGSnFkRLdf~G-FYtaVLE~--~geVVSaAsLRV-----~G 934 (1609)
.+++-..|...-.|-+|.|.-.++. |- .+.. +|.+|+|. .++||++|+|-| ||
T Consensus 21 f~elL~qLT~vG~vt~e~F~krf~~---------mk----------~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~ 81 (150)
T KOG3396|consen 21 FIELLKQLTSVGVVTREQFEKRFEA---------MK----------KSGDWYYIVVIEDKESEKVIGTATLFIERKFIHG 81 (150)
T ss_pred HHHHHHHHhhccccCHHHHHHHHHH---------HH----------hcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhc
Confidence 3555566776667777777744331 10 1122 78888884 589999999965 33
Q ss_pred c-ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000372 935 T-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 935 ~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
. .-..|-=|+|.+.||||++|+.|+..+-.+.++||+=++.|.-.++.+.||. ||||+.-.
T Consensus 82 ~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 82 CGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYE-KCGYSNAG 143 (150)
T ss_pred ccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHH-HcCccccc
Confidence 3 2345666899999999999999999999999999999999999999999999 89998765
No 57
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.47 E-value=0.00041 Score=79.26 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=68.0
Q ss_pred eEEEEEee---CCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch-----hhHHH
Q 000372 913 FYTAILER---GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-----AELMH 984 (1609)
Q Consensus 913 FYtaVLE~---~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-----~ea~~ 984 (1609)
.|++.+.. ++.+||.+.++.. ...++|-.+++.+.|||+|+|++||.++++.++..|+.+|++-.. ..+..
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 55555543 6789999998764 456899999999999999999999999999999999999988653 46888
Q ss_pred HhhhccCceec
Q 000372 985 TWTRVFGFTSL 995 (1609)
Q Consensus 985 tWT~KFGF~~v 995 (1609)
+|. ++||...
T Consensus 310 fY~-~~GF~~~ 319 (320)
T TIGR01686 310 FYE-QIGFEDE 319 (320)
T ss_pred HHH-HcCCccC
Confidence 998 8999854
No 58
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.46 E-value=0.00065 Score=70.31 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=64.8
Q ss_pred EEEEeeCCeEEEEEEEEeec--cceeeeeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecchh---hHHHHhhh
Q 000372 915 TAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIA---ELMHTWTR 988 (1609)
Q Consensus 915 taVLE~~geVVSaAsLRV~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~~---ea~~tWT~ 988 (1609)
.++++.++++||.+.+.... ...+|+- +++.+.|||+|+|+.|+..+.+.+. .+|+.+|++-... .++.++.
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye- 136 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR- 136 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH-
Confidence 44556799999999886543 3457774 8999999999999999999998765 6999999886543 5677887
Q ss_pred ccCceeccH
Q 000372 989 VFGFTSLEE 997 (1609)
Q Consensus 989 KFGF~~v~~ 997 (1609)
++||+.+..
T Consensus 137 k~GF~~~~~ 145 (186)
T PRK15130 137 KLGFEVEGE 145 (186)
T ss_pred HCCCEEEEE
Confidence 899998865
No 59
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.44 E-value=6.6e-05 Score=90.04 Aligned_cols=101 Identities=20% Similarity=0.424 Sum_probs=70.0
Q ss_pred ccccccCC-----CCCcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc--------------------------------
Q 000372 719 DTCGICGD-----GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-------------------------------- 761 (1609)
Q Consensus 719 DvC~VCGD-----GGdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~-------------------------------- 761 (1609)
..|.+|.. +.++..|+.|.++||+.|..+.....+.|.|..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 45667753 34588999999999999998766666778888775
Q ss_pred -------ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhcccccccCCCCCcceeeCccchhhHHHH
Q 000372 762 -------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHL 827 (1609)
Q Consensus 762 -------Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~CkeI~e~L 827 (1609)
|.+|+..... ..+.|++|+.|..+||..|.++.....+.-.+...|||. .|..-.+.+
T Consensus 164 ~~~~n~qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~-~C~~~~~~~ 228 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCD-VCNRGPKKV 228 (464)
T ss_pred cccccceeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeeh-hhccchhhc
Confidence 3334322211 224799999999999999999764333333466889996 565544444
No 60
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.44 E-value=0.001 Score=64.59 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=59.9
Q ss_pred EEEEEeeCCeEEEEEEEEee--ccceeeeeeeeeeccccccChhHHHHHHHHHHH-hhcCccEEEecchhhHHHHh--hh
Q 000372 914 YTAILERGDEIISAASIRFH--GTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAIAELMHTW--TR 988 (1609)
Q Consensus 914 YtaVLE~~geVVSaAsLRV~--G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L-~sLGVerLvLPA~~ea~~tW--T~ 988 (1609)
|.++...++++||...++.. ....|||- +.+.++|||+|+|..++..+...+ ..+|+.+|++...++-...- -.
T Consensus 59 ~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~ 137 (142)
T PF13302_consen 59 FAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLE 137 (142)
T ss_dssp EEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHH
T ss_pred EEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHH
Confidence 33333344589999999443 46889999 669999999999999999999998 79999999988776543322 24
Q ss_pred ccCce
Q 000372 989 VFGFT 993 (1609)
Q Consensus 989 KFGF~ 993 (1609)
|+||+
T Consensus 138 k~GF~ 142 (142)
T PF13302_consen 138 KLGFE 142 (142)
T ss_dssp HTT-E
T ss_pred HcCCC
Confidence 88985
No 61
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.41 E-value=3.7e-05 Score=95.97 Aligned_cols=48 Identities=48% Similarity=1.293 Sum_probs=41.8
Q ss_pred CcccccccccCCCCCcEeeCCCCCcCCCCcCCCCC--CCCCCCCCccccc
Q 000372 715 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTC 762 (1609)
Q Consensus 715 d~NDDvC~VCGDGGdLLcCDgCprAFH~~CLdpp~--VP~GdW~Cp~C~C 762 (1609)
+.+...|.+|+++|++|||+.|+.+||.+|++++. .|.++|.|+.|.|
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 45667899999999999999999999999999875 5668899997754
No 62
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.37 E-value=0.00011 Score=89.95 Aligned_cols=44 Identities=41% Similarity=1.151 Sum_probs=37.8
Q ss_pred cccccccCCCCCcEeeCCCCCcCCCCcCCCCC---CCCCCCCCcccc
Q 000372 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT 761 (1609)
Q Consensus 718 DDvC~VCGDGGdLLcCDgCprAFH~~CLdpp~---VP~GdW~Cp~C~ 761 (1609)
-..|++|..+|+++||+.|+.+||..|.+++. .+.+.|-|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 46899999999999999999999999999753 445678888885
No 63
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.35 E-value=0.0015 Score=65.52 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=65.2
Q ss_pred ccceEEEEEeeCCeEEEEEEEEe------eccceeeeeeeeeeccccccChhHHHHHHHHHHHhhc-CccEEEecchhhH
Q 000372 910 YSGFYTAILERGDEIISAASIRF------HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAEL 982 (1609)
Q Consensus 910 f~GFYtaVLE~~geVVSaAsLRV------~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea 982 (1609)
-.+++.+|...+|++||.+.+.- .....+.+-.+++.+.|||||+|+.++.++.+.+..- ++++|++....+-
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 35667788899999999887632 1345677889999999999999999999988887654 8999999887754
Q ss_pred ---HHHhhhccCceeccH
Q 000372 983 ---MHTWTRVFGFTSLEE 997 (1609)
Q Consensus 983 ---~~tWT~KFGF~~v~~ 997 (1609)
+..++ |+||+.+..
T Consensus 125 ~~~~~~~~-k~GF~~~g~ 141 (152)
T PF13523_consen 125 TRAIRLYE-KAGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-HTT-EEEEE
T ss_pred HHHHHHHH-HcCCEEeeE
Confidence 44555 899998764
No 64
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.30 E-value=0.0015 Score=62.14 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEec-ch-hhHHHHhhhccCceeccH
Q 000372 921 GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP-AI-AELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 921 ~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLP-A~-~ea~~tWT~KFGF~~v~~ 997 (1609)
+++.+..++..+.... ++|-.|.|.|+|||+|+|+.|+.+|.+.+..-|..-++.- .. ..+..+++ |+||+.+..
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 3455666666555555 9999999999999999999999999999888877654332 22 34667777 899998753
No 65
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.29 E-value=9.6e-05 Score=83.82 Aligned_cols=42 Identities=38% Similarity=1.009 Sum_probs=37.7
Q ss_pred ccccccCCCCCcEeeCC--CC-CcCCCCcCCCCCCCCCCCCCcccc
Q 000372 719 DTCGICGDGGDLICCDG--CP-STFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 719 DvC~VCGDGGdLLcCDg--Cp-rAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
.+|. |...|+++-||. |+ ..||..|+++...|.|.|||+.|+
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 3555 677899999998 99 899999999999999999999886
No 66
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.29 E-value=0.0016 Score=64.73 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=62.5
Q ss_pred EEeeCCeEEEEEEEEeec--cceeeeeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhhhcc
Q 000372 917 ILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWTRVF 990 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~---~ea~~tWT~KF 990 (1609)
++..+|++||.+.+.... ...+++-+. +.+.|| ||+|+.|+.++++.+. .+++.+|++... ..++.++. ++
T Consensus 55 ~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k~ 131 (156)
T TIGR03585 55 IVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-KF 131 (156)
T ss_pred EEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-Hc
Confidence 335789999999997655 356777655 889999 9999999999999976 589999987544 45666666 89
Q ss_pred CceeccHH
Q 000372 991 GFTSLEES 998 (1609)
Q Consensus 991 GF~~v~~e 998 (1609)
||+.+...
T Consensus 132 Gf~~~g~~ 139 (156)
T TIGR03585 132 GFEREGVF 139 (156)
T ss_pred CCeEeeee
Confidence 99987753
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.24 E-value=0.00076 Score=82.70 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=69.5
Q ss_pred cceEEEEEeeCCeEEEEEEEEeecccee-----------eeeeeee--------eccccccChhHHHHHHHHHHHhhcCc
Q 000372 911 SGFYTAILERGDEIISAASIRFHGTQLA-----------EMPFIGT--------RHIYRRQGMCRRLFCALESALCSLKV 971 (1609)
Q Consensus 911 ~GFYtaVLE~~geVVSaAsLRV~G~dlA-----------EmPlVAT--------r~~yRrQGmgR~Lv~aIE~~L~sLGV 971 (1609)
+.|-.+.-..++.+||-..||+...+.. ||-..++ .+.|||||+|+.||+++|+.++..|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 3344443346689999999998765433 6666655 58999999999999999999999999
Q ss_pred cEEEecchhhHHHHhhhccCceeccH
Q 000372 972 EKLIIPAIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 972 erLvLPA~~ea~~tWT~KFGF~~v~~ 997 (1609)
+.|+|.+-..+..+|. ++||....+
T Consensus 492 ~~i~v~s~~~A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 492 EKILVISGIGVREYYR-KLGYELDGP 516 (522)
T ss_pred CEEEEeeCchHHHHHH-HCCCEEEcc
Confidence 9999988888999999 899987654
No 68
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.22 E-value=0.0014 Score=68.53 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=63.5
Q ss_pred eEEEEEeeCCeEEEEEEEEeecc---ceeeeeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecchhh---HHHH
Q 000372 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAE---LMHT 985 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~---dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~~e---a~~t 985 (1609)
+|.+++..++++||.+.|..+.. ..|||= +.+.++|||||+++.++.++.+.+.. +|+.+|++...+. +..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45555556789999999875432 345654 56899999999999999999999865 8999999888765 3444
Q ss_pred hhhccCceeccH
Q 000372 986 WTRVFGFTSLEE 997 (1609)
Q Consensus 986 WT~KFGF~~v~~ 997 (1609)
.. |+||+....
T Consensus 156 ~e-k~Gf~~~g~ 166 (194)
T PRK10809 156 LA-RLGFEKEGY 166 (194)
T ss_pred HH-HCCCcEEee
Confidence 44 899997553
No 69
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.20 E-value=0.001 Score=75.51 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=67.5
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHH-HhhcCccEEEecch-hhHHHHhhhcc
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESA-LCSLKVEKLIIPAI-AELMHTWTRVF 990 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~-L~sLGVerLvLPA~-~ea~~tWT~KF 990 (1609)
+.++-++.+|+||+.|...-.+...|+|-.|.|.|+|||+||..+||.++-.. |..=....||+-++ +.|-.+|. +.
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 34445567779999999999999999999999999999999999999987655 55555667777655 44567777 89
Q ss_pred Cceecc
Q 000372 991 GFTSLE 996 (1609)
Q Consensus 991 GF~~v~ 996 (1609)
||+.+-
T Consensus 256 GF~~~g 261 (268)
T COG3393 256 GFREIG 261 (268)
T ss_pred CCeecc
Confidence 999865
No 70
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.05 E-value=0.0022 Score=67.86 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=67.3
Q ss_pred EEEEeeCCeEEEEEEEEeeccceee--eeeeeeeccccccChhHHHHHHHHHHHhhcC-ccEEEecchhhHHHHhhhccC
Q 000372 915 TAILERGDEIISAASIRFHGTQLAE--MPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAIAELMHTWTRVFG 991 (1609)
Q Consensus 915 taVLE~~geVVSaAsLRV~G~dlAE--mPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG-VerLvLPA~~ea~~tWT~KFG 991 (1609)
-++.+.+|++|++|-|---+....+ |=-|+|.+++||+|+|+.||....+.+...- =+-++|.|-.-+..||. .||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhC
Confidence 3444569999988877555555555 6678999999999999999988777766655 56699999999999999 799
Q ss_pred ceeccHH
Q 000372 992 FTSLEES 998 (1609)
Q Consensus 992 F~~v~~e 998 (1609)
|.++.+.
T Consensus 131 Fv~~~e~ 137 (155)
T COG2153 131 FVRVGEE 137 (155)
T ss_pred cEEcCch
Confidence 9999974
No 71
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=96.99 E-value=0.0038 Score=64.34 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=60.5
Q ss_pred eeCCeEEEEEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecchhh---HHHHhhhccCc
Q 000372 919 ERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIAE---LMHTWTRVFGF 992 (1609)
Q Consensus 919 E~~geVVSaAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~~e---a~~tWT~KFGF 992 (1609)
..++++||.+.++.+.. ..||+=+ .+.+.|||||+++.++.++.+.+. .+|+.+|.+-..+. +..++. |+||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-RNGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-HCCC
Confidence 35899999999876432 5688854 689999999999999998888775 58999998766544 445555 8999
Q ss_pred eeccH
Q 000372 993 TSLEE 997 (1609)
Q Consensus 993 ~~v~~ 997 (1609)
+....
T Consensus 151 ~~~g~ 155 (179)
T PRK10151 151 TLEGC 155 (179)
T ss_pred EEEeE
Confidence 98654
No 72
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.93 E-value=0.0036 Score=67.41 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=79.3
Q ss_pred ccceEEEEEeeC-CeEEEEEEEEeecc-----ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh--
Q 000372 910 YSGFYTAILERG-DEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE-- 981 (1609)
Q Consensus 910 f~GFYtaVLE~~-geVVSaAsLRV~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e-- 981 (1609)
=.|||.+|++.+ |+|++-|++.-|.. .++|. .|=+++.+||+|+|++|+.++...+..+|+..|+-.-..+
T Consensus 49 ~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~ 127 (169)
T COG1247 49 RDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNL 127 (169)
T ss_pred cCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCc
Confidence 356888888766 99999998877665 45554 4568899999999999999999999999998877332222
Q ss_pred HHHHhhhccCceeccHHHHHhhhccceEeecCcceeeecccc
Q 000372 982 LMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQKLLLE 1023 (1609)
Q Consensus 982 a~~tWT~KFGF~~v~~eek~~l~~~~ll~FpGTsmLqK~L~~ 1023 (1609)
+--....+|||..+....+- ..-.=.|=.+.+||+.|.+
T Consensus 128 aSi~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 128 ASIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred HhHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 33344469999998763322 2223345567788888754
No 73
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.75 E-value=0.00098 Score=83.74 Aligned_cols=69 Identities=30% Similarity=0.772 Sum_probs=50.8
Q ss_pred CCCCcCCCCcCCCCC--CCCCCCCCcccc--------------------ccccCCCCCCCCCCCCCCCCceecCCcchhh
Q 000372 735 GCPSTFHQSCLDIQM--LPPGDWHCPNCT--------------------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1609)
Q Consensus 735 gCprAFH~~CLdpp~--VP~GdW~Cp~C~--------------------Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERa 792 (1609)
.|+++||..|+++.. -|+++|.|+.|. |.+|+.. +.++.|+.|..+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~------------g~~l~c~tC~~s 68 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG------------GELLWCDTCPAS 68 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC------------CcEEEeccccHH
Confidence 499999999999753 457999999885 5555432 347789999999
Q ss_pred ccccchhcccccccCCCCCcceeeCccc
Q 000372 793 YHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1609)
Q Consensus 793 YHv~CL~~~d~~ple~~psg~WFCc~~C 820 (1609)
||..|+.+. ....+...|.|. .|
T Consensus 69 ~h~~cl~~p----l~~~p~~~~~c~-Rc 91 (696)
T KOG0383|consen 69 FHASCLGPP----LTPQPNGEFICP-RC 91 (696)
T ss_pred HHHHccCCC----CCcCCccceeee-ee
Confidence 999999752 222233449987 66
No 74
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=96.60 E-value=0.0088 Score=64.61 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=88.6
Q ss_pred ccccchhhHhHhhhhhcccccccCCCCCccccceeecCCCCCCcccccceEEEEEeeCCeEEEEEEEEe--ec-c--cee
Q 000372 864 VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRF--HG-T--QLA 938 (1609)
Q Consensus 864 vEcNSKLAvALtIM~ECFdPIID~rSGrDLIpdMVYNrGSnFkRLdf~GFYtaVLE~~geVVSaAsLRV--~G-~--dlA 938 (1609)
.|+.........+.++.|.|-.. ..++...- .-.++++. -..|-+.+|+||+...+-= +| . .+.
T Consensus 8 ~e~~~d~~~i~~~~~~aF~~~~e----~~~v~~lR-----~~~~~~~~--LslVA~d~g~vvG~Il~s~v~~~g~~~~~~ 76 (171)
T COG3153 8 TETPADIPAIEALTREAFGPGRE----AKLVDKLR-----EGGRPDLT--LSLVAEDDGEVVGHILFSPVTVGGEELGWL 76 (171)
T ss_pred ecChhhHHHHHHHHHHHhhcchH----HHHHHHHH-----hcCCcccc--eeEEEeeCCEEEEEEEEeEEEecCcccceE
Confidence 34445555566777788884322 22322221 11111222 2334567799998665421 22 2 344
Q ss_pred eeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccHHHHHhhhccceEe---ecCcc
Q 000372 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEESLKQEMRSLNMLV---FPGID 1015 (1609)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~~eek~~l~~~~ll~---FpGTs 1015 (1609)
=|=-+||.++||+||+|++||...++.|+.+|...+++--.+. +-.+|||..... +.+.+ +|.+.
T Consensus 77 ~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~----YY~rfGF~~~~~--------~~l~~p~~~~~~~ 144 (171)
T COG3153 77 GLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT----YYSRFGFEPAAG--------AKLYAPGPVPDER 144 (171)
T ss_pred EEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc----cccccCcEEccc--------cccccCCCCCCce
Confidence 5566899999999999999999999999999999999776653 337999998765 22222 57788
Q ss_pred eeeeccc
Q 000372 1016 MLQKLLL 1022 (1609)
Q Consensus 1016 mLqK~L~ 1022 (1609)
+|-+.|.
T Consensus 145 fl~~~L~ 151 (171)
T COG3153 145 FLALELG 151 (171)
T ss_pred EEEEEcc
Confidence 8888875
No 75
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.46 E-value=0.0011 Score=74.58 Aligned_cols=44 Identities=34% Similarity=1.044 Sum_probs=37.5
Q ss_pred ccccccccCC--CCCcEeeCC--CCC-cCCCCcCCCCCCCCCCCCCcccc
Q 000372 717 NDDTCGICGD--GGDLICCDG--CPS-TFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 717 NDDvC~VCGD--GGdLLcCDg--Cpr-AFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
+...| -|.. -|+|+-||+ |.+ .||..|+++...|.|.|||+.|+
T Consensus 220 e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 34567 4765 489999996 997 99999999999999999999996
No 76
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=96.24 E-value=0.0072 Score=66.49 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=43.8
Q ss_pred eeeeeeeeccccccChhHHHHHHHHHHH-------------------------hhcCccEEEe--cchhhHHHHhhhccC
Q 000372 939 EMPFIGTRHIYRRQGMCRRLFCALESAL-------------------------CSLKVEKLII--PAIAELMHTWTRVFG 991 (1609)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L-------------------------~sLGVerLvL--PA~~ea~~tWT~KFG 991 (1609)
.|--|||.|++||+|||++|++.+++.+ +.-+|..|=. =+.++++.||+ |.|
T Consensus 92 RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~g 170 (196)
T PF13718_consen 92 RIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNG 170 (196)
T ss_dssp EEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT
T ss_pred eEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCC
Confidence 3345799999999999999999999999 4667776543 35789999999 799
Q ss_pred ceeccH-HHHHhhh-ccceE
Q 000372 992 FTSLEE-SLKQEMR-SLNML 1009 (1609)
Q Consensus 992 F~~v~~-eek~~l~-~~~ll 1009 (1609)
|.+|-- ..+.... .|.++
T Consensus 171 f~pv~l~~~~n~~SGe~S~i 190 (196)
T PF13718_consen 171 FVPVYLGQTRNEASGEHSAI 190 (196)
T ss_dssp -EEEEE-SS--TTT---EEE
T ss_pred cEEEEEecCcccccCceeee
Confidence 999874 3344443 34443
No 77
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.06 E-value=0.0037 Score=66.15 Aligned_cols=31 Identities=39% Similarity=0.965 Sum_probs=25.5
Q ss_pred cCCCCcCCCCC--CCCCCCCCccccccccCCCC
Q 000372 739 TFHQSCLDIQM--LPPGDWHCPNCTCKFCGLAG 769 (1609)
Q Consensus 739 AFH~~CLdpp~--VP~GdW~Cp~C~Ck~CGk~~ 769 (1609)
.||++||.||. +|+|+|+||.|.....+...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 59999999974 89999999999876555443
No 78
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.97 E-value=0.014 Score=57.57 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=58.6
Q ss_pred EEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh--hccCcee
Q 000372 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT--RVFGFTS 994 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT--~KFGF~~ 994 (1609)
||...|.+||=... .+.+||+.-.|.|+|||||+.+.++....+.|..+|+.-- +....+-..+.. ..+||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y-~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFY-GHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeE-eehHhccHHHHHHHHHCCCee
Confidence 56777888876554 6779999999999999999999999999999999999853 344443333333 4788887
Q ss_pred cc
Q 000372 995 LE 996 (1609)
Q Consensus 995 v~ 996 (1609)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 76
No 79
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.92 E-value=0.037 Score=57.70 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=59.0
Q ss_pred cceEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch------hhHHH
Q 000372 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI------AELMH 984 (1609)
Q Consensus 911 ~GFYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~------~ea~~ 984 (1609)
.-+|++ ..|+.+++|+-+.+.|. -|+|--+.||+.-||+|.|..|++.+.+.+ -+|...++.+. ..++.
T Consensus 38 ~~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CeEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHH
Confidence 446777 79999999999999776 599999999999999999999999999998 55566555544 24455
Q ss_pred HhhhccCceecc
Q 000372 985 TWTRVFGFTSLE 996 (1609)
Q Consensus 985 tWT~KFGF~~v~ 996 (1609)
.....+||+..+
T Consensus 113 ~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 113 AFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHT-EE-S
T ss_pred HHHHHcCccccC
Confidence 555689997654
No 80
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=95.69 E-value=0.0037 Score=53.74 Aligned_cols=48 Identities=21% Similarity=0.708 Sum_probs=31.8
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhcccccccCCCCCcceeeCccch
Q 000372 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 762 Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~Ck 821 (1609)
|.+|+.... ...++.|+.|.++||..|+.+...... .....|+|+ .|.
T Consensus 2 C~vC~~~~~---------~~~~i~C~~C~~~~H~~C~~~~~~~~~--~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDD---------DGDMIQCDSCNRWYHQECVGPPEKAEE--IPSGDWYCP-NCR 49 (51)
T ss_dssp BTTTTSSCT---------TSSEEEBSTTSCEEETTTSTSSHSHHS--HHSSSBSSH-HHH
T ss_pred CcCCCCcCC---------CCCeEEcCCCChhhCcccCCCChhhcc--CCCCcEECc-CCc
Confidence 567776322 246999999999999999987432111 122389984 554
No 82
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.074 Score=53.24 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=67.3
Q ss_pred cceEEEEEeeCC--eEEEEEEEEeec----cceeeeeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecchhhHH
Q 000372 911 SGFYTAILERGD--EIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELM 983 (1609)
Q Consensus 911 ~GFYtaVLE~~g--eVVSaAsLRV~G----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~~ea~ 983 (1609)
.+.|.+++...+ ++||.+.+..+- ...+|+=..- .+.|+|||++...+.++.+.+-. +++.+|++-..+.-.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 344566555544 999999998654 4667765554 89999999999999999988555 999999988888777
Q ss_pred HHhh--hccCceeccH
Q 000372 984 HTWT--RVFGFTSLEE 997 (1609)
Q Consensus 984 ~tWT--~KFGF~~v~~ 997 (1609)
..|. .|+||+....
T Consensus 143 ~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 143 ASIRVYEKLGFRLEGE 158 (187)
T ss_pred HHHHHHHHcCChhhhh
Confidence 6666 5999988765
No 83
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.36 E-value=0.006 Score=73.62 Aligned_cols=44 Identities=39% Similarity=0.994 Sum_probs=36.2
Q ss_pred ccccccccCCCCC---cEeeCCCCCcCCCCcCCCCC--CCC----CCCCCccc
Q 000372 717 NDDTCGICGDGGD---LICCDGCPSTFHQSCLDIQM--LPP----GDWHCPNC 760 (1609)
Q Consensus 717 NDDvC~VCGDGGd---LLcCDgCprAFH~~CLdpp~--VP~----GdW~Cp~C 760 (1609)
....|++|...-+ |+.||.|...||+.||.||. +|. ..|+|.+|
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 3457999986654 89999999999999999975 443 56999988
No 84
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.34 E-value=0.022 Score=48.03 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=37.2
Q ss_pred eeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000372 943 IGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1609)
Q Consensus 943 VATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1609)
++|.+.|||||+|+.|+..+++.+...|+. ....++.+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 4445566666 6777
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=95.29 E-value=0.0068 Score=69.15 Aligned_cols=36 Identities=17% Similarity=0.496 Sum_probs=27.8
Q ss_pred CCceecCCc--ch-hhccccchhcccccccCCCCCcceeeCccchh
Q 000372 780 TSALLPCAM--CE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1609)
Q Consensus 780 ~~~LL~CdQ--CE-RaYHv~CL~~~d~~ple~~psg~WFCc~~Cke 822 (1609)
.+.|+.|+. |. .|||..|+.-. ..|.+.|||+ .|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVGL~------~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVGLK------TKPKGKWYCP-RCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEeccccc------cCCCCcccch-hhhh
Confidence 346899988 99 99999999842 3466889998 5543
No 86
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.13 Score=55.42 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=66.9
Q ss_pred cccccceEEEEEee-CCeEEEEEEEEe-----eccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE---ec
Q 000372 907 RLNYSGFYTAILER-GDEIISAASIRF-----HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI---IP 977 (1609)
Q Consensus 907 RLdf~GFYtaVLE~-~geVVSaAsLRV-----~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv---LP 977 (1609)
.-.|.=.+.+.++. +.+|||-|.+-. +|.+.-=|-=|=++++|||+|+|+.|++.+-+++..+|..+|- +.
T Consensus 48 d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vld 127 (163)
T KOG3216|consen 48 DPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLD 127 (163)
T ss_pred CCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 33445556666666 788888887754 3445555666789999999999999999999999999998864 44
Q ss_pred chhhHHHHhhhccCceeccH
Q 000372 978 AIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 978 A~~ea~~tWT~KFGF~~v~~ 997 (1609)
--.-|+.+++ +.|++.+..
T Consensus 128 wN~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 128 WNHRAILLYE-KVGAQDLKE 146 (163)
T ss_pred cchhHHHHHH-HhCccccce
Confidence 4456778887 677766554
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=95.13 E-value=0.1 Score=59.92 Aligned_cols=76 Identities=18% Similarity=0.057 Sum_probs=55.8
Q ss_pred eeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000372 919 ERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 919 E~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
..+++|||.|+=-......+||= |+|.++|||||+.+++..++......-|+--.|=.+ ..+--..-.|+||+..-
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccc
Confidence 36899999887777788889985 799999999999999999999999999988888543 22222333589998653
No 88
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.07 E-value=0.0089 Score=75.03 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=39.1
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceecCCcchhh-ccccchhcccccccCCCCCcceeeCccchhh
Q 000372 758 PNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKK-YHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1609)
Q Consensus 758 p~C~Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERa-YHv~CL~~~d~~ple~~psg~WFCc~~CkeI 823 (1609)
..|.|.+|+.+... ..|+.|+.|... ||.+||.+ ++...+-..||| ..|..+
T Consensus 214 E~~~C~IC~~~DpE---------dVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE---------DVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLL 266 (1134)
T ss_pred ccccceeeccCChH---------HhheeecccccceeeccccCc----ccccccccceec-Ccchhh
Confidence 35779999887653 258999999988 99999986 233346688999 578743
No 89
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.82 E-value=0.061 Score=59.34 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=65.7
Q ss_pred eEEEEEeeCCeEEEEEEEEe---eccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHh
Q 000372 913 FYTAILERGDEIISAASIRF---HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTW 986 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV---~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tW 986 (1609)
-|.+..+..+++||-+++|+ +|-.++=.-=|-+.+.|||+|+|+.|++.+|.+....+.+.++|-.- .-++.++
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 46777777779999999998 55455555556677889999999999999999999888887765443 4467777
Q ss_pred hhccCceeccH
Q 000372 987 TRVFGFTSLEE 997 (1609)
Q Consensus 987 T~KFGF~~v~~ 997 (1609)
. ++||-+.+.
T Consensus 173 ~-~~gf~~~~~ 182 (202)
T KOG2488|consen 173 H-RLGFVVDEE 182 (202)
T ss_pred H-HcCcccCCC
Confidence 7 799987764
No 90
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.72 E-value=0.0068 Score=81.46 Aligned_cols=45 Identities=40% Similarity=1.053 Sum_probs=39.0
Q ss_pred ccccccccCCCC---CcEeeCCCCCcCCCCcCCCC--CCCCCCCCCcccc
Q 000372 717 NDDTCGICGDGG---DLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCT 761 (1609)
Q Consensus 717 NDDvC~VCGDGG---dLLcCDgCprAFH~~CLdpp--~VP~GdW~Cp~C~ 761 (1609)
....|.+|...+ .++.|+.|...||.+|+.|. .+|.++|+|+.|+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 346899997544 59999999999999999985 5899999999998
No 91
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.54 E-value=0.01 Score=71.87 Aligned_cols=43 Identities=33% Similarity=0.858 Sum_probs=34.9
Q ss_pred ccccccCCCC-----CcEeeCCCCCcCCCCcCCCCC------CCCCCCCCcccc
Q 000372 719 DTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM------LPPGDWHCPNCT 761 (1609)
Q Consensus 719 DvC~VCGDGG-----dLLcCDgCprAFH~~CLdpp~------VP~GdW~Cp~C~ 761 (1609)
..|.+|..++ +||.|+.|...||+.|+.+.. -+.+.|||..|.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 3488987543 699999999999999998753 356789999885
No 92
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.39 E-value=0.052 Score=69.44 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=50.1
Q ss_pred eeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe--cchhhHHHHhhhccCceeccH-HHHHhhh-ccceE
Q 000372 941 PFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII--PAIAELMHTWTRVFGFTSLEE-SLKQEMR-SLNML 1009 (1609)
Q Consensus 941 PlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL--PA~~ea~~tWT~KFGF~~v~~-eek~~l~-~~~ll 1009 (1609)
-=|||+|++|++|||++|+..|.+.++ -++..|-. =+.+++..||. |.||.+|-- ..|.... .|+.+
T Consensus 535 vRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls~~rn~~SGeys~i 605 (758)
T COG1444 535 VRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHLSPTRNASSGEYTAI 605 (758)
T ss_pred EEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEecCccCcCCCceeEE
Confidence 347999999999999999999999986 33443332 25789999999 899999875 3444443 35443
No 93
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.29 E-value=0.0059 Score=50.93 Aligned_cols=34 Identities=41% Similarity=1.089 Sum_probs=20.3
Q ss_pred CCcEeeCCCCCcCCCCcCCCCCCCCC-CCCCcccc
Q 000372 728 GDLICCDGCPSTFHQSCLDIQMLPPG-DWHCPNCT 761 (1609)
Q Consensus 728 GdLLcCDgCprAFH~~CLdpp~VP~G-dW~Cp~C~ 761 (1609)
..||.|+.|.-++|+.|.++..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999888877 89998874
No 94
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.00 E-value=0.19 Score=50.51 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=61.4
Q ss_pred cceEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000372 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1609)
Q Consensus 911 ~GFYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1609)
.+||++ ..+|+.|+.++.--.|.+..=|+---|.+++||||+++.|+......++.-|.+ ++|.-+-+...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 567775 788989999998888889999999999999999999999999999999998884 5566664444444
No 95
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=93.66 E-value=0.22 Score=58.12 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=70.1
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1609)
+++++...+++||+|+++ +|.- |+.|||++.+||-|.--.|+.++-.++-++|..+|||=.-++-..+.. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 467778888999999997 6764 789999999999999999999999999999999999888777777777 6999
Q ss_pred eeccH
Q 000372 993 TSLEE 997 (1609)
Q Consensus 993 ~~v~~ 997 (1609)
..|..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 96
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=93.25 E-value=0.13 Score=56.35 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=60.2
Q ss_pred eeCCeEEEEEEE-Eeecc-ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000372 919 ERGDEIISAASI-RFHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 919 E~~geVVSaAsL-RV~G~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
|.+.+||+-+-| ||..+ +.-=+-.|.|....||||+||+||+..|..++..|...+.|..+ +-..||+ ++||..-+
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~-DQ~~FYe-~lGYe~c~ 140 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTD-DQCRFYE-SLGYEKCD 140 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecc-cchhhhh-hhcccccC
Confidence 455788877655 33333 33345577888999999999999999999999999999998766 4468998 79998777
Q ss_pred H
Q 000372 997 E 997 (1609)
Q Consensus 997 ~ 997 (1609)
+
T Consensus 141 P 141 (225)
T KOG3397|consen 141 P 141 (225)
T ss_pred c
Confidence 6
No 97
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=92.87 E-value=0.42 Score=45.46 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=47.0
Q ss_pred EeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEE
Q 000372 918 LERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL 974 (1609)
Q Consensus 918 LE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerL 974 (1609)
|..+|+.++...++. ..+.-.|--.-|.+++||||+++.||+++.+.++.-|.+-+
T Consensus 4 ~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 4 LKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 346688999999987 67778888889999999999999999999999999887644
No 98
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=91.72 E-value=0.058 Score=65.59 Aligned_cols=52 Identities=29% Similarity=0.876 Sum_probs=40.0
Q ss_pred ccccccC-----CCCCcEeeCCCCCcCCCCcCCCC---CCCC-------CCCCCcccc-------ccccCCCCC
Q 000372 719 DTCGICG-----DGGDLICCDGCPSTFHQSCLDIQ---MLPP-------GDWHCPNCT-------CKFCGLAGE 770 (1609)
Q Consensus 719 DvC~VCG-----DGGdLLcCDgCprAFH~~CLdpp---~VP~-------GdW~Cp~C~-------Ck~CGk~~~ 770 (1609)
.+|.||- +-|++|-||.|+-..|..|.+.. .+|. ..|||..|+ |.+|-...+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G 193 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG 193 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC
Confidence 3899995 35789999999999999999863 2332 579999998 666654444
No 99
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=91.69 E-value=0.21 Score=55.07 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=50.8
Q ss_pred ccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcC-ccEEEecch---hhHHHHhhhccCceeccH
Q 000372 934 GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAI---AELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 934 G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG-VerLvLPA~---~ea~~tWT~KFGF~~v~~ 997 (1609)
|.++.-|-.++|.+.||+.|+|..|++.+.+.....+ ..++++.+. ..++.+++ ++||+.+..
T Consensus 86 ~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~ 152 (187)
T KOG3138|consen 86 GNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVER 152 (187)
T ss_pred ccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeec
Confidence 3336778899999999999999999999999999988 665655544 34666666 899999875
No 100
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=91.63 E-value=0.95 Score=44.05 Aligned_cols=62 Identities=16% Similarity=0.020 Sum_probs=54.1
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1609)
...++|..+|++|+++.. +...+.+..-++++.++|++.+.+..|+..+.+.+...|++.+=
T Consensus 71 ~~l~~~~~~g~~va~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d 132 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALG-FRHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFD 132 (142)
T ss_pred EEEEEEEECCEEEEEEEE-EEECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEE
Confidence 456677889999988876 55566788999999999999999999999999999999998875
No 101
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=90.63 E-value=0.34 Score=57.74 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=64.6
Q ss_pred cccccceEEEEEeeCCeEEEEEEEEee------cc---ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEec
Q 000372 907 RLNYSGFYTAILERGDEIISAASIRFH------GT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP 977 (1609)
Q Consensus 907 RLdf~GFYtaVLE~~geVVSaAsLRV~------G~---dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLP 977 (1609)
-+++.++|++ ..+.++++ .|++. |. ..|-|-.||+-|+|||+|+-|.|+....+..+.-|+.-.+|.
T Consensus 35 il~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 4566777775 56667643 44443 44 557788999999999999999999999999999999998876
Q ss_pred chhhHHHHhhhccCceeccH
Q 000372 978 AIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 978 A~~ea~~tWT~KFGF~~v~~ 997 (1609)
+.. ..+|. ||||..-..
T Consensus 111 P~s--~~iYr-KfGye~asn 127 (389)
T COG4552 111 PFS--GGIYR-KFGYEYASN 127 (389)
T ss_pred cCc--hhhHh-hccccccce
Confidence 654 45676 899976543
No 102
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=90.42 E-value=0.23 Score=53.76 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=49.0
Q ss_pred eeeeeeeeeccccccChhHHHHHH-HHHHHhhcCccEEEecchhhHHHHhhhccCceeccH
Q 000372 938 AEMPFIGTRHIYRRQGMCRRLFCA-LESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~a-IE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~~ 997 (1609)
+-|-.+|+.++||.||++..|+.. |..+-..-=|.+.+|=+-..+++||. +|||+.|.+
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 556678999999999999999876 44444555577888888899999999 899999886
No 103
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=89.60 E-value=0.84 Score=49.80 Aligned_cols=83 Identities=13% Similarity=0.259 Sum_probs=63.9
Q ss_pred eCCeEEEEEEEEeecc-----ceeeeeeeeeeccccccChhHHHHHHHH-HHHhhcCccEEEecchh---hHHHHhhhcc
Q 000372 920 RGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALE-SALCSLKVEKLIIPAIA---ELMHTWTRVF 990 (1609)
Q Consensus 920 ~~geVVSaAsLRV~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE-~~L~sLGVerLvLPA~~---ea~~tWT~KF 990 (1609)
.+|.|||-.....+-. .-.-|-.|||.-.|||.|++++||..-. .++...+-+.+=|..+. .|+..|++.+
T Consensus 49 ~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl 128 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTL 128 (193)
T ss_pred CCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhcc
Confidence 7889999877655431 1345779999999999999999998644 44666777777777764 6899999999
Q ss_pred CceeccHHHHHh
Q 000372 991 GFTSLEESLKQE 1002 (1609)
Q Consensus 991 GF~~v~~eek~~ 1002 (1609)
||.+.+-+-+.+
T Consensus 129 ~F~v~eve~kYY 140 (193)
T KOG3235|consen 129 GFVVCEVEPKYY 140 (193)
T ss_pred ceEEeecccccc
Confidence 999988655543
No 104
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=87.19 E-value=1.2 Score=49.01 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=55.6
Q ss_pred eEEEEEeeCCeEEEEEEEEeeccceeeee-----eeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHH
Q 000372 913 FYTAILERGDEIISAASIRFHGTQLAEMP-----FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELM 983 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsLRV~G~dlAEmP-----lVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~ 983 (1609)
.|.+|-+ ++++||...||..=.+ ..++ --+|+|.-||+||++.++.-....++.||++.+.|-+..+-.
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ 143 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNI 143 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 3556655 8999999999975332 2233 357999999999999999999999999999999988886643
No 105
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=86.05 E-value=0.87 Score=55.72 Aligned_cols=71 Identities=21% Similarity=0.473 Sum_probs=45.8
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhccccc---ccCCC---CCcceeeCccchh---hHH
Q 000372 755 WHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDAL---SDNLT---GLVTSFCGRKCQE---LSE 825 (1609)
Q Consensus 755 W~Cp~C~Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~---ple~~---psg~WFCc~~Cke---I~e 825 (1609)
=||..|.|.+|.+.+.+ ..+..++.|+.|.++.|..|--..... +.... ....-|+|..|.. ++.
T Consensus 124 gFC~~C~C~iC~kfD~~------~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG 197 (446)
T PF07227_consen 124 GFCRRCMCCICSKFDDN------KNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLG 197 (446)
T ss_pred CccccCCccccCCcccC------CCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhhHHH
Confidence 57999999999875432 234568999999999999996432211 11111 1244677788875 445
Q ss_pred HHHhHh
Q 000372 826 HLQKYL 831 (1609)
Q Consensus 826 ~LQKLL 831 (1609)
.+++++
T Consensus 198 ~vk~vf 203 (446)
T PF07227_consen 198 FVKKVF 203 (446)
T ss_pred HHHHHH
Confidence 555543
No 106
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=83.64 E-value=0.65 Score=61.69 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=27.7
Q ss_pred CCceecCCcchhhccccchhcccccccCCCCCcceeeCccch
Q 000372 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 780 ~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~Ck 821 (1609)
.+.+++|+.|..++|+.|+.- ...+++.|+| ..|.
T Consensus 233 ~n~ivfCD~Cnl~VHq~Cygi------~~ipeg~WlC-r~Cl 267 (1051)
T KOG0955|consen 233 SNVIVFCDGCNLAVHQECYGI------PFIPEGQWLC-RRCL 267 (1051)
T ss_pred CceEEEcCCCcchhhhhccCC------CCCCCCcEee-hhhc
Confidence 357999999999999999982 1246789998 5664
No 107
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=83.15 E-value=1 Score=55.48 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=48.3
Q ss_pred EEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccH
Q 000372 930 IRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1609)
Q Consensus 930 LRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v~~ 997 (1609)
|||+|..+..=. ....+|+||||+.||...|+.++.-+.+++.+=+---+.+-|. ||||...-+
T Consensus 446 lhvyg~~vpig~---~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 446 LHVYGSEVPIGK---REDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred hhcccccccccc---CcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 445555433222 2578999999999999999999999999887666666677777 899986543
No 108
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=82.88 E-value=0.69 Score=53.18 Aligned_cols=35 Identities=17% Similarity=0.563 Sum_probs=27.3
Q ss_pred CceecCC--cch-hhccccchhcccccccCCCCCcceeeCccchh
Q 000372 781 SALLPCA--MCE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1609)
Q Consensus 781 ~~LL~Cd--QCE-RaYHv~CL~~~d~~ple~~psg~WFCc~~Cke 822 (1609)
+.|+-|+ -|+ .|||..|+.. ...|.+.|+| ..|+.
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGL------k~pPKG~WYC-~eCk~ 269 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGL------KEPPKGKWYC-PECKK 269 (271)
T ss_pred ccceecCCCCCchhheecccccc------CCCCCCcEeC-HHhHh
Confidence 4689997 487 6899999984 3357799999 68875
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=81.88 E-value=7 Score=43.35 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=57.7
Q ss_pred eEEEEEeeCCeEEEEEEE-Eeec----cc--eeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHH
Q 000372 913 FYTAILERGDEIISAASI-RFHG----TQ--LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1609)
Q Consensus 913 FYtaVLE~~geVVSaAsL-RV~G----~d--lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~t 985 (1609)
||.++|.-...||+..++ +.+. .+ +-=+=|.=+.|+|||+|+++.+...+-+.+... =...++.+...+..+
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 356665555668876665 3332 23 455555557999999999975555544556553 345677788899999
Q ss_pred hhhccCceeccH
Q 000372 986 WTRVFGFTSLEE 997 (1609)
Q Consensus 986 WT~KFGF~~v~~ 997 (1609)
|..-|||..+..
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999887766
No 110
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=81.48 E-value=1.6 Score=47.64 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.7
Q ss_pred eeeeeeeeccccccChhHHHHHHHHHHHhhcC---ccEEEecchhhHHHHhhhccCcee
Q 000372 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLK---VEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG---VerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
-+--|++.|.|||+|++..||+.||.....-+ |..+|.-.-.-|+.+++ +|||.+
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~ 128 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSV 128 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceE
Confidence 34457889999999999999999999877664 33444445566889999 788875
No 111
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=80.68 E-value=1.4 Score=41.97 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=38.2
Q ss_pred HhcCeeeeeccCCC---CCccccEeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000372 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1609)
Q Consensus 404 l~aGWtid~rpR~~---r~Y~DaVYi~p~G~~yWSi~kAY~~~~~~~~~~~~~~k~~~~~~~f~~ 465 (1609)
|-.||+...+.|.+ ..-.|..|++|.|+.+.|...-...| +..........+-|.|.+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL----~~~~~~~~l~~~~F~F~~ 71 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL----KENPSEHDLKPENFSFSK 71 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH----TTSS---SS-CTTBBTTT
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH----HhCCCcccCCHhHCCCCC
Confidence 56799999998884 35799999999999999987665555 332222223334566643
No 112
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=78.98 E-value=0.81 Score=62.63 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=37.4
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhcccccccCCCCCcceeeCccchhhHH
Q 000372 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1609)
Q Consensus 762 Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~CkeI~e 825 (1609)
|.+|...... ..|+.|+.|..+||..|+++. ....+.+.|+|+ .|..-..
T Consensus 1111 c~~cr~k~~~---------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD---------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred hhhhhhcccc---------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCC-ccchhhh
Confidence 7788776553 358999999999999999973 334567889995 6665444
No 113
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=77.76 E-value=13 Score=42.39 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCCcccccceEEEEEe-eCCeEEEEEEEEee------------------------------ccceeeeeeeeeecccc
Q 000372 902 GSNFNRLNYSGFYTAILE-RGDEIISAASIRFH------------------------------GTQLAEMPFIGTRHIYR 950 (1609)
Q Consensus 902 GSnFkRLdf~GFYtaVLE-~~geVVSaAsLRV~------------------------------G~dlAEmPlVATr~~yR 950 (1609)
|-++..+|-.--|.++.. .+|++||++-|.-. ...++|+==+|+.+.||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 445666665556666654 35889888776431 13588888899999999
Q ss_pred cc--------C--------------------hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000372 951 RQ--------G--------------------MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 951 rQ--------G--------------------mgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
++ | +...|+.++-+.+...|+.+++.-+.+-+..++. ++||..
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~ 195 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQF 195 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCce
Confidence 74 2 3467999999999999999999888887777775 788654
No 114
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=77.33 E-value=1.2 Score=56.87 Aligned_cols=46 Identities=20% Similarity=0.563 Sum_probs=33.8
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhcccccccCCCCCcceeeCccch
Q 000372 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 762 Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~Ck 821 (1609)
|.+|..++.+. .+.|++|+.|--..|..|+.-. ..+.++|.| ..|.
T Consensus 274 CDvCrspD~e~-------~neMVfCd~Cn~cVHqaCyGIl------e~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 274 CDVCRSPDSEE-------ANEMVFCDKCNICVHQACYGIL------EVPEGPWLC-RTCA 319 (893)
T ss_pred eceecCCCccc-------cceeEEeccchhHHHHhhhcee------ecCCCCeee-hhcc
Confidence 66777665432 2569999999999999999842 246689998 4554
No 115
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=76.27 E-value=3.5 Score=39.86 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=41.4
Q ss_pred HhcCeeeeeccCCC--CCccccEeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000372 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1609)
Q Consensus 404 l~aGWtid~rpR~~--r~Y~DaVYi~p~G~~yWSi~kAY~~~~~~~~~~~~~~k~~~~~~~f~~ 465 (1609)
|-.||+...++|++ .-..|..||+|.|+.+=|... +.+.|+... ..-+....|.|++
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~e----v~~yL~~~~-~~~~~~~~FdF~~ 65 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVE----LARYLEKNG-PTSLDLSDFDFTV 65 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHH----HHHHHHhCC-CCCCcHhHcccCC
Confidence 56899999999998 889999999999998877654 444455432 2234445577764
No 116
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=74.08 E-value=1.4 Score=55.94 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=29.3
Q ss_pred CCCceecCC--cchhhccccchhcccccccCCCCCcceeeCccchh
Q 000372 779 TTSALLPCA--MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1609)
Q Consensus 779 S~~~LL~Cd--QCERaYHv~CL~~~d~~ple~~psg~WFCc~~Cke 822 (1609)
..+.|++|| -|.-+.|+.|+.-. ..|.++||| ++|..
T Consensus 18 aeNPLVYCDG~nCsVAVHQaCYGIv------qVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 18 AENPLVYCDGHNCSVAVHQACYGIV------QVPTGPWFC-RKCES 56 (900)
T ss_pred ccCceeeecCCCceeeeehhcceeE------ecCCCchhh-hhhhh
Confidence 346799996 69999999999843 346799999 78854
No 117
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=73.98 E-value=1.4 Score=54.38 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=26.8
Q ss_pred CCceecCCcchhhccccchhcccccccCCCCCcceeeCccc
Q 000372 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1609)
Q Consensus 780 ~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~C 820 (1609)
.+.+++|+-|+-..|+.|+.-. ..+++.|+| +.|
T Consensus 207 ~naiVfCdgC~i~VHq~CYGI~------f~peG~WlC-rkC 240 (669)
T COG5141 207 SNAIVFCDGCEICVHQSCYGIQ------FLPEGFWLC-RKC 240 (669)
T ss_pred cceEEEecCcchhhhhhcccce------ecCcchhhh-hhh
Confidence 4579999999999999999742 236688998 555
No 118
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=69.70 E-value=3.7 Score=50.88 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=35.7
Q ss_pred cccccccccCCCCCcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc
Q 000372 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 716 ~NDDvC~VCGDGGdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
.+.+.|.+|.++|.+++|+.|..++|..|.... .|...|.|..|.
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~-~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQ-LEKCSKRCTDCR 131 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcCcc-CcccccCCccee
Confidence 356799999999999999988888888888543 466667766665
No 119
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=68.54 E-value=3.1 Score=41.16 Aligned_cols=68 Identities=24% Similarity=0.621 Sum_probs=42.1
Q ss_pred cccccCCCCCcEeeCCCCCcCCCCcCCC-C----------------CCCCCCCCCccccccccCCCCCCCCCCCCCCCCc
Q 000372 720 TCGICGDGGDLICCDGCPSTFHQSCLDI-Q----------------MLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSA 782 (1609)
Q Consensus 720 vC~VCGDGGdLLcCDgCprAFH~~CLdp-p----------------~VP~GdW~Cp~C~Ck~CGk~~~ds~eEd~~S~~~ 782 (1609)
.|.+|...|.++--..-..-.|..|.-. + .++...| .=.|.+|+...+ .
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~C~iC~~~~G-----------~ 67 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF---KLKCSICGKSGG-----------A 67 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc---CCcCcCCCCCCc-----------e
Confidence 4788876655444444577788888752 1 0111111 112667766532 4
Q ss_pred eecCCc--chhhccccchhcc
Q 000372 783 LLPCAM--CEKKYHKLCMQEM 801 (1609)
Q Consensus 783 LL~CdQ--CERaYHv~CL~~~ 801 (1609)
.+.|.. |.+.||+.|....
T Consensus 68 ~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 68 CIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred eEEcCCCCCCcCCCHHHHHHC
Confidence 789988 9999999998753
No 120
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=67.73 E-value=1.3 Score=43.13 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.0
Q ss_pred CceeecceeeeccCCcccccc-eeeeccCCcccch
Q 000372 656 SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1609)
Q Consensus 656 ~kvFSpSeFEaHAGsk~rqPY-~NIyLedGrSLLq 689 (1609)
+++|||++||.|+|....+.| .+|++ .|.+|-.
T Consensus 41 g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~ 74 (82)
T PF01342_consen 41 GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGK 74 (82)
T ss_dssp TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHH
T ss_pred CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHH
Confidence 789999999999999888888 66766 7888763
No 121
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=66.75 E-value=8.2 Score=35.57 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=32.9
Q ss_pred HhcCeeeeeccCCC--CCccccEeeCCCCceeeehHHHHHHH
Q 000372 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDAL 443 (1609)
Q Consensus 404 l~aGWtid~rpR~~--r~Y~DaVYi~p~G~~yWSi~kAY~~~ 443 (1609)
+-.||+-..++|++ +-..|-.|++|.|+..=|....-..|
T Consensus 6 ~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL 47 (62)
T cd00122 6 LPPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYL 47 (62)
T ss_pred CCCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHH
Confidence 36799999999998 89999999999999887765544444
No 122
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=66.48 E-value=1.1 Score=59.49 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=39.9
Q ss_pred ccccccccCCCCCcEeeCC-CCCcCCC-CcCCCC----CCCCCCCCCcccc
Q 000372 717 NDDTCGICGDGGDLICCDG-CPSTFHQ-SCLDIQ----MLPPGDWHCPNCT 761 (1609)
Q Consensus 717 NDDvC~VCGDGGdLLcCDg-CprAFH~-~CLdpp----~VP~GdW~Cp~C~ 761 (1609)
+.+.|.+|+..+.++||++ ||..||. .||+-. .++++.|+|+.|.
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~ 477 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEI 477 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHH
Confidence 3467999999999999998 9999999 999942 4899999999997
No 123
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=66.48 E-value=2.8 Score=45.23 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=19.8
Q ss_pred hccccchhcccccccCCCCCcceeeCccch
Q 000372 792 KYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 792 aYHv~CL~~~d~~ple~~psg~WFCc~~Ck 821 (1609)
.||..||.| |+...|.+.|+|+ .|.
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~Cp-~C~ 25 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWICP-FCE 25 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCCC-CCc
Confidence 499999997 4566788999996 565
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=63.52 E-value=13 Score=37.60 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=38.0
Q ss_pred CCeEEEEEEEEeec--cceeeeeeeeeeccccccChhHHHHHHHHHHH
Q 000372 921 GDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1609)
Q Consensus 921 ~geVVSaAsLRV~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1609)
++...+||.+.--+ ..++-|=.+|+.+..|++|+++.|+.+|-+..
T Consensus 16 ~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 16 SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 45577777775433 58899999999999999999999999998763
No 125
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=62.00 E-value=1.7 Score=52.90 Aligned_cols=74 Identities=18% Similarity=0.509 Sum_probs=39.4
Q ss_pred cccccCCC--CCcEeeCCCCCcCCCCcCC-------CCCCC-----CCCCCCcccc-------ccccCCCCCCCCCCCCC
Q 000372 720 TCGICGDG--GDLICCDGCPSTFHQSCLD-------IQMLP-----PGDWHCPNCT-------CKFCGLAGEDDAEGDDT 778 (1609)
Q Consensus 720 vC~VCGDG--GdLLcCDgCprAFH~~CLd-------pp~VP-----~GdW~Cp~C~-------Ck~CGk~~~ds~eEd~~ 778 (1609)
.|.+|+.. ..+| -.|+++||..|.. +..+| ...-||-.|- |.+|+.+---...++.
T Consensus 336 kC~~Cg~~I~d~iL--rA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~e- 412 (468)
T KOG1701|consen 336 KCNKCGEPIMDRIL--RALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDE- 412 (468)
T ss_pred HHhhhhhHHHHHHH--HhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcc-
Confidence 57777653 1122 2477788877653 11111 2457777773 8899876542211111
Q ss_pred CCCceecCCcchhhccccchhc
Q 000372 779 TTSALLPCAMCEKKYHKLCMQE 800 (1609)
Q Consensus 779 S~~~LL~CdQCERaYHv~CL~~ 800 (1609)
.+.-..=+|-||+.|+.-
T Consensus 413 ----tvRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 413 ----TVRVVAMDRDFHVNCYKC 430 (468)
T ss_pred ----eEEEEEccccccccceeh
Confidence 111122367899988863
No 126
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=61.88 E-value=21 Score=40.14 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=47.7
Q ss_pred chhhHhHhhhhhcccccccCCCCCccccceeecCCCCCCcccccceEEEEEeeCC--eEEEEEEEEeeccceeeeeeeee
Q 000372 868 SKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGD--EIISAASIRFHGTQLAEMPFIGT 945 (1609)
Q Consensus 868 SKLAvALtIM~ECFdPIID~rSGrDLIpdMVYNrGSnFkRLdf~GFYtaVLE~~g--eVVSaAsLRV~G~dlAEmPlVAT 945 (1609)
..-+..|-.|-.+|. |.+| +.| ..+.--||++.-..++ ++||-=+---+..+---|--|-|
T Consensus 26 ~~yCqnLcLlaKLFL---d~Kt-------lyy-------dv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFL---DHKT-------LYY-------DVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGC-------CTT--------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHHh---hCeE-------EEe-------ecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 445677788888887 4333 223 2233446776544433 34443332222222235667899
Q ss_pred eccccccChhHHHHHHHHHHHhh
Q 000372 946 RHIYRRQGMCRRLFCALESALCS 968 (1609)
Q Consensus 946 r~~yRrQGmgR~Lv~aIE~~L~s 968 (1609)
.|.|||+|+|+.|++.-=.+.+.
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHH
T ss_pred cchhhhcchhhhhhhhHHHHhhc
Confidence 99999999999999875555443
No 127
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.76 E-value=5.6 Score=47.89 Aligned_cols=44 Identities=34% Similarity=0.745 Sum_probs=31.1
Q ss_pred ccccccCCC---CCcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccccc
Q 000372 719 DTCGICGDG---GDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCK 763 (1609)
Q Consensus 719 DvC~VCGDG---GdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~Ck 763 (1609)
+.|.+|-+. |+.|-==-|...||..|.++..... .=+||-|+|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 699999753 5533334588999999999865433 3358877764
No 128
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=60.66 E-value=14 Score=41.01 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.9
Q ss_pred cEeeCCCCCcCCCCcCCCC
Q 000372 730 LICCDGCPSTFHQSCLDIQ 748 (1609)
Q Consensus 730 LLcCDgCprAFH~~CLdpp 748 (1609)
|.-|..|-++||..-|.+.
T Consensus 124 LFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred EEecCCccceeehhhCCCC
Confidence 8889999999999999764
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=58.55 E-value=33 Score=39.99 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=61.3
Q ss_pred EEEEe-eCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchh--hHHHHhhhccC
Q 000372 915 TAILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA--ELMHTWTRVFG 991 (1609)
Q Consensus 915 taVLE-~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~--ea~~tWT~KFG 991 (1609)
.++++ .+|++|+++.+-.+ .+.+.....|+.++|++.+-.-.|+-.+.+.+++-|++.+=+=... +-+-.++.+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYF-RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEe-CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 68999988777444 4445556888999999999999999999999999999998764322 23444667788
Q ss_pred ceeccH
Q 000372 992 FTSLEE 997 (1609)
Q Consensus 992 F~~v~~ 997 (1609)
|.+++-
T Consensus 276 ~~~~~l 281 (330)
T TIGR03019 276 FEPQPL 281 (330)
T ss_pred Ceeccc
Confidence 887653
No 130
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=58.44 E-value=14 Score=41.32 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=41.9
Q ss_pred eeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000372 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1609)
Q Consensus 937 lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1609)
+||+=|.|++++.+|.||++.| .++--.|+.|||.--|--.++.+..-.+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~ 134 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE 134 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH
Confidence 6999999999999999999976 6899999999998777666655555554
No 131
>smart00258 SAND SAND domain.
Probab=57.81 E-value=4.4 Score=39.31 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=30.9
Q ss_pred CeeeCC--C-CceeecceeeeccCCcccccc-eeeeccCCcccch
Q 000372 649 GIHCGC--C-SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1609)
Q Consensus 649 GI~C~C--C-~kvFSpSeFEaHAGsk~rqPY-~NIyLedGrSLLq 689 (1609)
||.+.| | +++|||++||.+||....+.| .+|+. +|++|..
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~ 65 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRT 65 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHH
Confidence 666666 2 578999999999999888888 45554 6888763
No 132
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=54.87 E-value=54 Score=35.13 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=54.8
Q ss_pred EEeeCCeEEEEEEE--Eeecc-----ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhc
Q 000372 917 ILERGDEIISAASI--RFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRV 989 (1609)
Q Consensus 917 VLE~~geVVSaAsL--RV~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~K 989 (1609)
++.-+|.+||-|.+ |+|-. .++|+=.| ..||++||||...++|-.+.+.+ -+-.+||--..|+++|+ +
T Consensus 41 ~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK-~ 115 (143)
T COG5628 41 LFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK-R 115 (143)
T ss_pred EEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH-h
Confidence 33568888888765 22222 45665444 47999999999999998875432 23456778888999999 4
Q ss_pred cCcee-ccHHHHHhhh
Q 000372 990 FGFTS-LEESLKQEMR 1004 (1609)
Q Consensus 990 FGF~~-v~~eek~~l~ 1004 (1609)
|-++. +..++|+..+
T Consensus 116 ~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 116 VAETYPVVEEDRQDAR 131 (143)
T ss_pred hhcccccchhhhhccc
Confidence 54443 3345555443
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=54.85 E-value=6 Score=36.59 Aligned_cols=29 Identities=31% Similarity=1.049 Sum_probs=25.2
Q ss_pred ccccccCC----CCCcEeeCCCCCcCCCCcCCC
Q 000372 719 DTCGICGD----GGDLICCDGCPSTFHQSCLDI 747 (1609)
Q Consensus 719 DvC~VCGD----GGdLLcCDgCprAFH~~CLdp 747 (1609)
..|.+|++ +++++.|..|...||..|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 47999985 678999999999999999854
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.33 E-value=6.5 Score=48.56 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=26.2
Q ss_pred cccccccCC---CC-CcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc
Q 000372 718 DDTCGICGD---GG-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 718 DDvC~VCGD---GG-dLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
-.+|.||-. .. ..|.---|..+||-.|+... ++-.||-|+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR 218 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCR 218 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhh
Confidence 458999963 22 24555568999999999652 233466554
No 135
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=50.37 E-value=26 Score=41.64 Aligned_cols=61 Identities=18% Similarity=0.069 Sum_probs=36.2
Q ss_pred cccceEEEEEe--eCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhc
Q 000372 909 NYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL 969 (1609)
Q Consensus 909 df~GFYtaVLE--~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sL 969 (1609)
+.--||++.-. .+.++||-=+=--+..+---|--|-|.|.|||+|+|+.|++.-=.+-+.-
T Consensus 125 ~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 125 DPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 33445665422 23456654332222222234778899999999999999998655544333
No 136
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=50.22 E-value=16 Score=48.72 Aligned_cols=52 Identities=33% Similarity=0.883 Sum_probs=41.0
Q ss_pred cccccccCCCCC--cEeeCCCCCcCCCCcCCCC--CCCCCCCCCccccccccCCCC
Q 000372 718 DDTCGICGDGGD--LICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCKFCGLAG 769 (1609)
Q Consensus 718 DDvC~VCGDGGd--LLcCDgCprAFH~~CLdpp--~VP~GdW~Cp~C~Ck~CGk~~ 769 (1609)
...|..|..+.. ++.|+.|...||.+|+.++ .++.++|.|+.|....|....
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPN 210 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcc
Confidence 357888976653 4499999999999999975 588999999999876555443
No 137
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=49.42 E-value=1.1e+02 Score=34.35 Aligned_cols=93 Identities=8% Similarity=0.085 Sum_probs=66.4
Q ss_pred CCCCCccccc-ceEEEEEeeCCeEEEEEEE----------Ee----e-------ccceeeeeeeeeecccc---ccC---
Q 000372 902 GSNFNRLNYS-GFYTAILERGDEIISAASI----------RF----H-------GTQLAEMPFIGTRHIYR---RQG--- 953 (1609)
Q Consensus 902 GSnFkRLdf~-GFYtaVLE~~geVVSaAsL----------RV----~-------G~dlAEmPlVATr~~yR---rQG--- 953 (1609)
|-++..+|.. -.|.+.+..+|+|||++-| .+ + ..++.|+==+++.+.|+ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 4556666643 4677777788899987754 01 1 34788998889988753 222
Q ss_pred -hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 954 -MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 954 -mgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
+...|+.++-+.+...|+++++.-..+-+..++ .++||..-
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l-~r~G~~~~ 163 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERIL-ARAGWPMQ 163 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-HHcCCCeE
Confidence 557899999999999999999977777666655 47887653
No 138
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=49.07 E-value=7.5 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=15.5
Q ss_pred CceecCCcchhhccccchhcccccccCCCCCcceee
Q 000372 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFC 816 (1609)
Q Consensus 781 ~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFC 816 (1609)
+.|++|+.|.-..|..|+.-... .....|+|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~-----~~~~~W~C 32 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEV-----PDGDDWLC 32 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS-------SS-----
T ss_pred CceEEeCCCCCcCChhhCCcccC-----CCCCcEEC
Confidence 35899999999999999984321 12235998
No 139
>PTZ00064 histone acetyltransferase; Provisional
Probab=48.34 E-value=20 Score=45.20 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=45.8
Q ss_pred hhhHhHhhhhhcccccccCCCCCccccceeecCCCCCCcccccceEEEEEe--eCCeEEEEEEEEeeccceeeeeeeeee
Q 000372 869 KLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTR 946 (1609)
Q Consensus 869 KLAvALtIM~ECFdPIID~rSGrDLIpdMVYNrGSnFkRLdf~GFYtaVLE--~~geVVSaAsLRV~G~dlAEmPlVATr 946 (1609)
..+.-|-.|-..|+ |.+| +.| ..+.--||++.-. .+-++||-=+=-..-.+---|--|-|.
T Consensus 331 lYCQNLCLLAKLFL---DhKT-------LYy-------DVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILtL 393 (552)
T PTZ00064 331 GYAENLCYLAKLFL---DHKT-------LQY-------DVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILTL 393 (552)
T ss_pred hHHHHHHHHHHHhc---cCcc-------ccc-------cccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEec
Confidence 34556666667777 4433 223 2333445654322 234666533322222222347788999
Q ss_pred ccccccChhHHHHHHHHHH
Q 000372 947 HIYRRQGMCRRLFCALESA 965 (1609)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~ 965 (1609)
|.|||+|||+.|++.==.+
T Consensus 394 PpyQRKGYGklLIdfSYeL 412 (552)
T PTZ00064 394 PCYQRKGYGKLLVDLSYKL 412 (552)
T ss_pred chhhhcchhhhhhhhhhhh
Confidence 9999999999999764444
No 140
>PLN03239 histone acetyltransferase; Provisional
Probab=47.18 E-value=24 Score=42.86 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=23.3
Q ss_pred eeeeeeeeccccccChhHHHHHHHHHHHh
Q 000372 939 EMPFIGTRHIYRRQGMCRRLFCALESALC 967 (1609)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~ 967 (1609)
-|--|-|.|.|||+|+|+.|++--=.+-+
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr 243 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSK 243 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhh
Confidence 47788999999999999999976544433
No 141
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=46.66 E-value=19 Score=44.91 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=45.0
Q ss_pred hhhHhHhhhhhcccccccCCCCCccccceeecCCCCCCcccccceEEEEEe--eCCeEEEEEEEEeeccceeeeeeeeee
Q 000372 869 KLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTR 946 (1609)
Q Consensus 869 KLAvALtIM~ECFdPIID~rSGrDLIpdMVYNrGSnFkRLdf~GFYtaVLE--~~geVVSaAsLRV~G~dlAEmPlVATr 946 (1609)
..+.-|-.|-..|+ |.+| +.| ..+.--||++.-. .+-++||-=+==-+-.+---|--|-|.
T Consensus 253 ~yCqnLcLlaKLFL---dhKt-------lyy-------dV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltl 315 (450)
T PLN00104 253 VYCQNLCYLAKLFL---DHKT-------LYY-------DVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTL 315 (450)
T ss_pred hHHHHHHHHHHHhh---cCcc-------eec-------cccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEec
Confidence 34556666667777 4433 223 2333445655421 344666643332222222347788999
Q ss_pred ccccccChhHHHHHHH
Q 000372 947 HIYRRQGMCRRLFCAL 962 (1609)
Q Consensus 947 ~~yRrQGmgR~Lv~aI 962 (1609)
|.|||+|||+.|++--
T Consensus 316 P~yQrkGyG~~LI~~S 331 (450)
T PLN00104 316 PPYQRKGYGKFLIAFS 331 (450)
T ss_pred chhhhcchhheehhhe
Confidence 9999999999998753
No 142
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=44.74 E-value=20 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.0
Q ss_pred eeeeeeeccccccChhHHHHHH
Q 000372 940 MPFIGTRHIYRRQGMCRRLFCA 961 (1609)
Q Consensus 940 mPlVATr~~yRrQGmgR~Lv~a 961 (1609)
|--|=|.|.|||+|||+.|++-
T Consensus 263 laCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeeeeecChhhhcccchhhhhh
Confidence 7789999999999999999863
No 143
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=44.31 E-value=13 Score=34.43 Aligned_cols=34 Identities=29% Similarity=0.849 Sum_probs=26.6
Q ss_pred cccccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhc
Q 000372 759 NCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1609)
Q Consensus 759 ~C~Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~ 800 (1609)
.++|..|++.-.+ ...++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~--------~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKD--------GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccC--------CCCEEECCCCCCcccHHHHhh
Confidence 4578889876542 235899999999999999875
No 144
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=43.86 E-value=85 Score=34.87 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=45.0
Q ss_pred CCeEEE-----EEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000372 921 GDEIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1609)
Q Consensus 921 ~geVVS-----aAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1609)
++++|| -+.+||++. +.+||=|+-++..+|.+++.=.|+.+|=+.+..-||-.=+
T Consensus 87 ~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 87 SKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 566666 467899888 8999999999999999999999999999998888875544
No 145
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=41.50 E-value=36 Score=36.06 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=37.6
Q ss_pred eeccccccChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhhhccCceeccHHHHHhhhccceEeecC
Q 000372 945 TRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPG 1013 (1609)
Q Consensus 945 Tr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-~ea~~tWT~KFGF~~v~~eek~~l~~~~ll~FpG 1013 (1609)
+.+..||+|+|++|++.+.+.- .+....+-+.-. +-++.+..+.+|-+...+ ...++++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ip------Q~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKKHYGLQRYIP------QSNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHHhcCCCcCCC------CCccEEEehH
Confidence 7889999999999999877652 222233332222 235566665566544322 2456788875
No 146
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=41.20 E-value=48 Score=36.56 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=38.9
Q ss_pred eeeeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecch---hhHHHHhhhccCceecc
Q 000372 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAI---AELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~---~ea~~tWT~KFGF~~v~ 996 (1609)
+|+-+.---|..||+|+|+-.|.++...+.+ |++.+..+-.. ...+.+.. ||+|..+-
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~ 169 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVF 169 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeee
Confidence 4444555568999999999999998887543 56666665542 23444444 78887653
No 147
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=40.01 E-value=14 Score=47.22 Aligned_cols=56 Identities=25% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCcccc-----ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhcccccccCCCCCcceeeCccchhhHHHH
Q 000372 756 HCPNCT-----CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHL 827 (1609)
Q Consensus 756 ~Cp~C~-----Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~~d~~ple~~psg~WFCc~~CkeI~e~L 827 (1609)
.|..|. |.+|..... .-++.......|..|...||..|+... -.||..|.++..+-
T Consensus 503 ~C~lC~~~gfiCe~Cq~~~i----iyPF~~~~~~rC~~C~avfH~~C~~r~------------s~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 503 ECDLCTGKGFICELCQHNDI----IYPFETRNTRRCSTCLAVFHKKCLRRK------------SPCCPRCERRQKRA 563 (580)
T ss_pred hchhhccCeeeeeeccCCCc----ccccccccceeHHHHHHHHHHHHHhcc------------CCCCCchHHHHHHh
Confidence 477775 667732221 112223456899999999999999852 12356887766543
No 148
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=39.88 E-value=26 Score=45.81 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.8
Q ss_pred CCccccceeecCCCCCCcccccceEEEEEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHH
Q 000372 890 GINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1609)
Q Consensus 890 GrDLIpdMVYNrGSnFkRLdf~GFYtaVLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1609)
+-|+||=.|- ..|.+-+|-++|- |.|--|||+|+|++-|||.+-++-+.+.+
T Consensus 592 ~GdlIpW~vs---eQf~D~~F~~l~G----------------------aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 592 AGDLIPWTVS---EQFQDEDFPKLSG----------------------ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred cCCccceehh---hhhcccchhcccC----------------------ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 4588886652 3466666665553 33445799999999999999888877743
No 149
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=39.40 E-value=8.7 Score=43.61 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=36.9
Q ss_pred CCcEeeCCCCCcC--------CCCcCCCCCCCCCCCCCccccccccCCCCCCCCC----CCCCCCCceecCCcchhhccc
Q 000372 728 GDLICCDGCPSTF--------HQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAE----GDDTTTSALLPCAMCEKKYHK 795 (1609)
Q Consensus 728 GdLLcCDgCprAF--------H~~CLdpp~VP~GdW~Cp~C~Ck~CGk~~~ds~e----Ed~~S~~~LL~CdQCERaYHv 795 (1609)
++...|+.|.++| |+.|...- ....|.+||+.-.+.-. ..+.+...-..|.+|+++|-.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 4555666666666 66666431 12347788875443110 011122345899999999999
Q ss_pred cchh
Q 000372 796 LCMQ 799 (1609)
Q Consensus 796 ~CL~ 799 (1609)
.|.-
T Consensus 186 rcsl 189 (267)
T KOG3576|consen 186 RCSL 189 (267)
T ss_pred hccH
Confidence 9954
No 150
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=38.39 E-value=14 Score=43.54 Aligned_cols=31 Identities=32% Similarity=0.671 Sum_probs=26.6
Q ss_pred CeeeCCCCceeecceeeeccCCc-ccccceee
Q 000372 649 GIHCGCCSKILTVSKFEIHAGSK-LRQPFQNI 679 (1609)
Q Consensus 649 GI~C~CC~kvFSpSeFEaHAGsk-~rqPY~NI 679 (1609)
-|.|-|=...|+|.+|..|||+. ...|.++|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 38999999999999999999985 56677766
No 151
>PRK00756 acyltransferase NodA; Provisional
Probab=38.34 E-value=43 Score=37.40 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=34.1
Q ss_pred eeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000372 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1609)
Q Consensus 937 lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1609)
+||+=|.|++++.+|+||+..+ .++--.|+.|||.--|
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 6999999999999999999877 6899999999997544
No 152
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=36.90 E-value=21 Score=45.68 Aligned_cols=24 Identities=38% Similarity=0.839 Sum_probs=19.4
Q ss_pred cccccccCCCCCcEeeCCCCCcCC
Q 000372 718 DDTCGICGDGGDLICCDGCPSTFH 741 (1609)
Q Consensus 718 DDvC~VCGDGGdLLcCDgCprAFH 741 (1609)
-+.|..|+..|..+.|+.|+.-++
T Consensus 68 ~~~c~~c~G~gkv~~c~~cG~~~~ 91 (715)
T COG1107 68 YDTCPECGGTGKVLTCDICGDIIV 91 (715)
T ss_pred EeecccCCCceeEEeeccccceec
Confidence 467888888888888888887766
No 153
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=36.54 E-value=16 Score=34.68 Aligned_cols=28 Identities=39% Similarity=0.916 Sum_probs=11.5
Q ss_pred ccccccCCC----CC--cEeeC--CCCCcCCCCcCC
Q 000372 719 DTCGICGDG----GD--LICCD--GCPSTFHQSCLD 746 (1609)
Q Consensus 719 DvC~VCGDG----Gd--LLcCD--gCprAFH~~CLd 746 (1609)
..|.||... ++ .+.|+ .|...||..||-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 468888642 22 57898 899999999996
No 154
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=36.35 E-value=51 Score=33.60 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=32.5
Q ss_pred EEEEEEeec-cceeeeeeeeeeccccccChhHHHHHHHHHHH
Q 000372 926 SAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1609)
Q Consensus 926 SaAsLRV~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1609)
+||.+.--. ..++-|=.+|+.+..|++|+++.|+.+|-+..
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 345543222 36889999999999999999999999998874
No 155
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=35.86 E-value=26 Score=43.98 Aligned_cols=30 Identities=27% Similarity=0.764 Sum_probs=21.5
Q ss_pred CcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc
Q 000372 729 DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 729 dLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
+|.+|..|-.-=..+|...+ -..||||.|.
T Consensus 4 ~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL 33 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE---IDSYYCPNCL 33 (483)
T ss_pred cceecccccccCChhhcccc---cceeECcccc
Confidence 57888888776666676543 3469999986
No 156
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=34.77 E-value=20 Score=36.68 Aligned_cols=36 Identities=36% Similarity=1.042 Sum_probs=22.7
Q ss_pred CCCCcCCCCcCCC-------CCCCCCCCCCcccc----ccccCCCCC
Q 000372 735 GCPSTFHQSCLDI-------QMLPPGDWHCPNCT----CKFCGLAGE 770 (1609)
Q Consensus 735 gCprAFH~~CLdp-------p~VP~GdW~Cp~C~----Ck~CGk~~~ 770 (1609)
.|...|=..||-- +.+....|.||.|+ |.+|.+..+
T Consensus 35 ~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g 81 (105)
T PF10497_consen 35 GCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRG 81 (105)
T ss_pred cCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCC
Confidence 3355555556532 12456889999998 777766543
No 157
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=34.30 E-value=18 Score=35.88 Aligned_cols=30 Identities=40% Similarity=1.005 Sum_probs=25.7
Q ss_pred cccccccCC-CCCcEeeCC--CCCcCCCCcCCC
Q 000372 718 DDTCGICGD-GGDLICCDG--CPSTFHQSCLDI 747 (1609)
Q Consensus 718 DDvC~VCGD-GGdLLcCDg--CprAFH~~CLdp 747 (1609)
...|.+|+. .|-.+-|.. |..+||..|.-.
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 568999997 577999997 999999999853
No 158
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=32.34 E-value=14 Score=36.99 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=23.6
Q ss_pred ccccCCCCC---cEeeCCCCCcCCCCcCCCCC-CCCCCCCCcccc
Q 000372 721 CGICGDGGD---LICCDGCPSTFHQSCLDIQM-LPPGDWHCPNCT 761 (1609)
Q Consensus 721 C~VCGDGGd---LLcCDgCprAFH~~CLdpp~-VP~GdW~Cp~C~ 761 (1609)
|..|..+|+ |+++ .|...||..|+.... .....=.||.|+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR 78 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCR 78 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcC
Confidence 333444554 4444 499999999986432 122334787776
No 159
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=31.64 E-value=38 Score=32.85 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.3
Q ss_pred eeeeeeeccccccChhHHHHHHHHHHH
Q 000372 940 MPFIGTRHIYRRQGMCRRLFCALESAL 966 (1609)
Q Consensus 940 mPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1609)
|.-|=|.+.+|||||.++||+++-...
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 344557899999999999999998763
No 160
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=31.30 E-value=2.2e+02 Score=35.36 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=58.2
Q ss_pred cccceEEEEEeeCC--eEEE-----EEEEEeecc--ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCcc------E
Q 000372 909 NYSGFYTAILERGD--EIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVE------K 973 (1609)
Q Consensus 909 df~GFYtaVLE~~g--eVVS-----aAsLRV~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVe------r 973 (1609)
++.--|.+.+...+ .+|+ -+.|||.+. .++||-|+-++-.-|.+++.=.|+.+|-+...--||- -
T Consensus 130 g~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaG 209 (421)
T KOG2779|consen 130 GWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAG 209 (421)
T ss_pred CCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcc
Confidence 34444666655443 6666 357999998 8999999999999999999999999998765444443 2
Q ss_pred EEecchhhHHHHhhh
Q 000372 974 LIIPAIAELMHTWTR 988 (1609)
Q Consensus 974 LvLPA~~ea~~tWT~ 988 (1609)
++||+--..-.-|..
T Consensus 210 vvLp~PVstcRY~HR 224 (421)
T KOG2779|consen 210 VVLPKPVSTCRYWHR 224 (421)
T ss_pred eeeccccchhhhhhc
Confidence 566666666666664
No 161
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.18 E-value=31 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=25.7
Q ss_pred ccccccccCCCCCcEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc
Q 000372 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 717 NDDvC~VCGDGGdLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
..-.|..||...-...|..|+.. +...|+|+.|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~-----------Te~i~fCP~CG 658 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH-----------TEPVYRCPRCG 658 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC-----------CCcceeCcccc
Confidence 35689999988877788888764 34458898885
No 162
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=30.43 E-value=97 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=42.0
Q ss_pred ccccccChhHHHHHHHHHHHhhcCccEEEecch----hhHHHHhhhccCceeccHH
Q 000372 947 HIYRRQGMCRRLFCALESALCSLKVEKLIIPAI----AELMHTWTRVFGFTSLEES 998 (1609)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~----~ea~~tWT~KFGF~~v~~e 998 (1609)
...||.|.+|+|..-+-..+..-|-.+|+|-.- .++-..+...|||+++-+.
T Consensus 94 ~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 94 SRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred ecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 346899999999999999999999999887432 3456677779999998763
No 163
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.16 E-value=36 Score=38.06 Aligned_cols=34 Identities=38% Similarity=1.062 Sum_probs=0.0
Q ss_pred cccccCCCC--------CcEeeCCCCCcCCCCcCCCCCCCCCCCCCccc
Q 000372 720 TCGICGDGG--------DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNC 760 (1609)
Q Consensus 720 vC~VCGDGG--------dLLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C 760 (1609)
+|.+|.+.+ ....|..|...||..|..... ||.|
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~~~-------CpkC 195 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRKKS-------CPKC 195 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCCCC-------CCCc
No 164
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.96 E-value=37 Score=43.21 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=37.4
Q ss_pred ccccccccCCCCCcEeeCCCCCcCCCCcCCCC-CCC--CCCCCCcccc
Q 000372 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ-MLP--PGDWHCPNCT 761 (1609)
Q Consensus 717 NDDvC~VCGDGGdLLcCDgCprAFH~~CLdpp-~VP--~GdW~Cp~C~ 761 (1609)
.+..|+-|.-.|..+.|+.|-+.||..|+.+. ..+ ...|.|+.|.
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 35689999999999999999999999999874 233 3579999876
No 165
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=27.11 E-value=1.1e+02 Score=34.21 Aligned_cols=73 Identities=25% Similarity=0.404 Sum_probs=55.8
Q ss_pred eeCCeEEEEEEEEeecc----------------------------ceeeeeeeeeeccccccChhHHHHHHHHHHHhhcC
Q 000372 919 ERGDEIISAASIRFHGT----------------------------QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK 970 (1609)
Q Consensus 919 E~~geVVSaAsLRV~G~----------------------------dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG 970 (1609)
..+|++++|+.+|.-.. .++||==+|.. +.|..+.|+..|-..|...|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 35677777777776431 34444444433 58999999999999999999
Q ss_pred ccEEEecchhhHHHHhhhccCceecc
Q 000372 971 VEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 971 VerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
.+-+|.-|++.+..+.. ++|+.+..
T Consensus 117 ~~w~vfTaT~~lr~~~~-rlgl~~~~ 141 (179)
T PF12261_consen 117 FEWVVFTATRQLRNLFR-RLGLPPTV 141 (179)
T ss_pred CCEEEEeCCHHHHHHHH-HcCCCcee
Confidence 99999999999999888 67766544
No 166
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.66 E-value=33 Score=45.08 Aligned_cols=42 Identities=24% Similarity=0.635 Sum_probs=32.3
Q ss_pred CCCCCCCCCcccc------ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchhc
Q 000372 749 MLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1609)
Q Consensus 749 ~VP~GdW~Cp~C~------Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~~ 800 (1609)
++-.+.|+|..|. |.+|+..-. +..+.|.+|++.=|..|+..
T Consensus 763 ~~~~~~~~c~rc~s~a~~~CtVC~~vi~----------G~~~~c~~C~H~gH~sh~~s 810 (839)
T KOG0269|consen 763 MVLTKLWQCDRCESRASAKCTVCDLVIR----------GVDVWCQVCGHGGHDSHLKS 810 (839)
T ss_pred cccccceeechHHHHhhcCceeecceee----------eeEeecccccccccHHHHHH
Confidence 3444559999996 888875433 35789999999999999985
No 167
>KOG3581 consensus Creatine kinases [Energy production and conversion]
Probab=25.62 E-value=76 Score=38.16 Aligned_cols=158 Identities=21% Similarity=0.185 Sum_probs=92.2
Q ss_pred cccccccccCCCCCCcccCCCCccccccchhhHhHhhhhhcccccccCCC-C---CccccceeecCCCCCCcccccceEE
Q 000372 840 GLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRS-G---INLIHNVLYNSGSNFNRLNYSGFYT 915 (1609)
Q Consensus 840 GfSWtLLrr~D~Dsdvs~~gi~q~vEcNSKLAvALtIM~ECFdPIID~rS-G---rDLIpdMVYNrGSnFkRLdf~GFYt 915 (1609)
.+-|+|+..+....- .+-.-+-+..--+.|-++|-+-|+|||.-+- | .+.-|.+=++....|..+|+.|-|+
T Consensus 50 ~~g~tL~d~IqsGv~----~~d~~VG~yApD~EaY~vFadLFDpiIedyH~Gf~p~~~qp~tdlg~~~~~~~ldpd~~yi 125 (363)
T KOG3581|consen 50 PLGATLDDCIQSGVH----NLDSGVGVYAPDAEAYTVFADLFDPIIEDYHGGFKPTDKQPATDLGKTKEFGGLDPDGKYI 125 (363)
T ss_pred CCCCcHHHHHHhCCe----ehhcccceecCcHHHHHHHHHHhchHHHHHhcCCCccccCCCccCCcccccCCCCCCCcee
Confidence 456666665443210 0111133445567799999999999987543 4 4666777777888999999999997
Q ss_pred EEEeeCCeEEEEEEEEe-eccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000372 916 AILERGDEIISAASIRF-HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1609)
Q Consensus 916 aVLE~~geVVSaAsLRV-~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1609)
. +-|| .|+.+--.||=--..+-.++-|=.....++..+-..|.=++ +=.+-
T Consensus 126 ~------------StRvRcGRSi~Gy~fnPclt~~~y~emE~kv~~a~s~l~gelkGkY----------------ypL~g 177 (363)
T KOG3581|consen 126 L------------STRVRCGRSIKGYPFNPCLTEANYREMESKVKEALSSLTGELKGKY----------------YPLTG 177 (363)
T ss_pred E------------eeeeccccccCCCcCCccccHHHHHHHHHHHHHHHHhcchhhccce----------------ecccc
Confidence 5 2344 45565555554433333333333333333333322222222 33566
Q ss_pred ccHHHHHhhhccceEeecCcceeeeccccccCccc
Q 000372 995 LEESLKQEMRSLNMLVFPGIDMLQKLLLEQEGIKE 1029 (1609)
Q Consensus 995 v~~eek~~l~~~~ll~FpGTsmLqK~L~~~~~~d~ 1029 (1609)
|++.+++++-.-.+|.=.|.-+||-.=...-|+++
T Consensus 178 M~~~~QqqLI~DHFLFkegdr~L~aa~a~r~WP~g 212 (363)
T KOG3581|consen 178 MTEAEQQQLIDDHFLFKEGDRLLQAAGAARDWPDG 212 (363)
T ss_pred ccHHHHHhhhhhhhhhhccCHHHHhccccccCCcc
Confidence 77776677665555555677777766666666664
No 168
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=25.51 E-value=4.2e+02 Score=29.50 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCCccc-ccceEEEEEeeCCeEEEEEEEEe--------------e-------ccceeeeeeeeeeccccc------cChh
Q 000372 904 NFNRLN-YSGFYTAILERGDEIISAASIRF--------------H-------GTQLAEMPFIGTRHIYRR------QGMC 955 (1609)
Q Consensus 904 nFkRLd-f~GFYtaVLE~~geVVSaAsLRV--------------~-------G~dlAEmPlVATr~~yRr------QGmg 955 (1609)
++..+| ..-.|.+++.. |+|+|++-|.- + +.++-|+==+++.+..++ .-+.
T Consensus 36 E~DqyD~~~~~ylv~~~~-g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~ 114 (182)
T PF00765_consen 36 EIDQYDDPDAVYLVALDD-GRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVT 114 (182)
T ss_dssp E--TTGCTT-EEEEEEET-TEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THH
T ss_pred EeeecCCCCCeEEEEEEC-CEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHH
Confidence 334444 24467777665 99999876531 1 136778777888776432 2367
Q ss_pred HHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000372 956 RRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1609)
Q Consensus 956 R~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~v 995 (1609)
..|+.++-+.+.+.|++.++.-+.+-+..++. ++||...
T Consensus 115 ~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 115 MELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 89999999999999999999877777766666 7888754
No 169
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.43 E-value=33 Score=32.79 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=25.9
Q ss_pred cccccccCCC-CCcEeeCC--CCCcCCCCcCCC
Q 000372 718 DDTCGICGDG-GDLICCDG--CPSTFHQSCLDI 747 (1609)
Q Consensus 718 DDvC~VCGDG-GdLLcCDg--CprAFH~~CLdp 747 (1609)
...|.+|+.. |-.+-|.. |...||..|.-.
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4589999998 88888885 999999999864
No 170
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=25.39 E-value=90 Score=30.48 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=28.0
Q ss_pred HhcCeeeeeccCCC---CCccccEeeCCCCceeeehHH
Q 000372 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIK 438 (1609)
Q Consensus 404 l~aGWtid~rpR~~---r~Y~DaVYi~p~G~~yWSi~k 438 (1609)
+-.||+=..+.|+. +-=.|.+|++|.|+..=|.-.
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~e 45 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSE 45 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHH
Confidence 56799999988883 456899999999998766543
No 171
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=24.82 E-value=2.8e+02 Score=29.65 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=48.9
Q ss_pred EEeeCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000372 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1609)
Q Consensus 917 VLE~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1609)
-+..+|++|+||.+.+...-+.-|-++= .|+|....+|...+-.-.+.++.+|.+.+.
T Consensus 43 ~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 43 EYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 3458999999999998877766666553 688999999999888888899999999998
No 172
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=35 Score=43.72 Aligned_cols=36 Identities=19% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCCCCcccc-----------ccccCCCCCCCCCCCCCCCCceecCCcchhhccccchh
Q 000372 753 GDWHCPNCT-----------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQ 799 (1609)
Q Consensus 753 GdW~Cp~C~-----------Ck~CGk~~~ds~eEd~~S~~~LL~CdQCERaYHv~CL~ 799 (1609)
..|||+.|. |..|+...... =.|+.|++.|+..++.
T Consensus 125 ~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arG-----------D~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 125 EGLYCVSCERFLPDRYVEGTCPKCGGEDARG-----------DQCENCGRTLDPTELI 171 (558)
T ss_pred eeeEcccccccccchheeccCCCcCccccCc-----------chhhhccCcCCchhcC
Confidence 358888885 77776433211 2699999999998864
No 173
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.93 E-value=27 Score=44.77 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.3
Q ss_pred cCCeeeCCCCceeecceeeeccCCcccccceeeec
Q 000372 647 RDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYL 681 (1609)
Q Consensus 647 rdGI~C~CC~kvFSpSeFEaHAGsk~rqPY~NIyL 681 (1609)
.+-+.|+.|...+....|+.|... +.|.+|.+
T Consensus 405 ~~~V~C~NC~~~i~l~~l~lHe~~---C~r~~V~C 436 (567)
T PLN03086 405 VDTVECRNCKHYIPSRSIALHEAY---CSRHNVVC 436 (567)
T ss_pred CCeEECCCCCCccchhHHHHHHhh---CCCcceeC
Confidence 445689999999999999999753 45566644
No 174
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=23.57 E-value=46 Score=40.27 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=41.2
Q ss_pred ceecCCcchhhccccc--hhcccccccCCCCCcceeeCccchhhHHHHHhHhccccccccccccccc
Q 000372 782 ALLPCAMCEKKYHKLC--MQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLI 846 (1609)
Q Consensus 782 ~LL~CdQCERaYHv~C--L~~~d~~ple~~psg~WFCc~~CkeI~e~LQKLLGVk~eLEsGfSWtLL 846 (1609)
.+..|+.|..+||..| ... .-.+......|+| ..|+....+++..-+..-.....++|.+.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~~~~l~~~~~~~~~~~~s 136 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSESDGLSCVCRQDDSELLS 136 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhhhccceeecccccccccc
Confidence 4789999999999999 542 1223345678999 89999888887653333334445555543
No 175
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=23.03 E-value=59 Score=39.25 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=18.6
Q ss_pred CCceecCCcchhhcc-ccchhcc
Q 000372 780 TSALLPCAMCEKKYH-KLCMQEM 801 (1609)
Q Consensus 780 ~~~LL~CdQCERaYH-v~CL~~~ 801 (1609)
...|++|-.|+-||| .+|++..
T Consensus 145 e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 145 EGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cceeeeEEeccchhcccccCccc
Confidence 357999999999999 8898753
No 176
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=22.85 E-value=43 Score=40.80 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.7
Q ss_pred ceeeeeeeeeeccccccChhHHHHH
Q 000372 936 QLAEMPFIGTRHIYRRQGMCRRLFC 960 (1609)
Q Consensus 936 dlAEmPlVATr~~yRrQGmgR~Lv~ 960 (1609)
+---+--|-|.|.|||+|+|..|++
T Consensus 261 ~~yNLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 261 QDYNLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred ccCceEEEEecChhHhcccceEeee
Confidence 3345778899999999999999875
No 177
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=21.99 E-value=98 Score=29.39 Aligned_cols=29 Identities=10% Similarity=0.539 Sum_probs=24.6
Q ss_pred eCCeEEEEEEEEeeccceeeeeeeeeecc
Q 000372 920 RGDEIISAASIRFHGTQLAEMPFIGTRHI 948 (1609)
Q Consensus 920 ~~geVVSaAsLRV~G~dlAEmPlVATr~~ 948 (1609)
.-|++||.+.+.+-|..++++||+|...-
T Consensus 61 ~kG~~vG~~~v~~~~~~i~~vpL~a~~~v 89 (91)
T PF07943_consen 61 KKGQVVGTLTVYLDGKLIGEVPLVASEDV 89 (91)
T ss_dssp GTTSEEEEEEEEETTEEEEEEEEEESS-B
T ss_pred cCCCEEEEEEEEECCEEEEEEEEEECCcc
Confidence 45899999999888999999999998653
No 178
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.91 E-value=1.8e+02 Score=29.81 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=47.8
Q ss_pred eeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhh----ccCceeccHHHHHhhhccceEe
Q 000372 940 MPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR----VFGFTSLEESLKQEMRSLNMLV 1010 (1609)
Q Consensus 940 mPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~----KFGF~~v~~eek~~l~~~~ll~ 1010 (1609)
|..+.+.-..|..|..+.|++++.+.|...|++.=++.-..-.++++.. .+.+..--.+....+.....++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 5677788888999999999999999999999888666555434444442 2233333345566666655433
No 179
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=21.66 E-value=56 Score=25.17 Aligned_cols=9 Identities=78% Similarity=2.169 Sum_probs=7.3
Q ss_pred CCCCCcccc
Q 000372 753 GDWHCPNCT 761 (1609)
Q Consensus 753 GdW~Cp~C~ 761 (1609)
++|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579999874
No 180
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=21.49 E-value=7.9 Score=32.80 Aligned_cols=40 Identities=33% Similarity=0.824 Sum_probs=24.2
Q ss_pred ccccccCCC---CC-cEeeCCCCCcCCCCcCCCCCCCCCCCCCcccc
Q 000372 719 DTCGICGDG---GD-LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1609)
Q Consensus 719 DvC~VCGDG---Gd-LLcCDgCprAFH~~CLdpp~VP~GdW~Cp~C~ 761 (1609)
|.|.+|.+. ++ ++... |...||..|+.....- ...||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh--CCcCCccC
Confidence 468888753 33 44444 9999999999753211 13677764
No 181
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=21.37 E-value=97 Score=37.99 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=32.7
Q ss_pred ccccccChhHHHHHHHHHHHhhc-CccEEEecchhhHHHHhhhccCceecc
Q 000372 947 HIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1609)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea~~tWT~KFGF~~v~ 996 (1609)
..||+||+|.+||++.|+.++.- |-.++-+-+--...+.|. ||||..--
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecC
Confidence 46999999999999999998754 444443323323333444 89987543
No 182
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=21.00 E-value=1.6e+02 Score=36.49 Aligned_cols=46 Identities=11% Similarity=0.353 Sum_probs=39.1
Q ss_pred eCCeEEEEEEEEeeccceeeeeeeeeeccccccChhHHHHHHHHHHH
Q 000372 920 RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1609)
Q Consensus 920 ~~geVVSaAsLRV~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1609)
+.|+.||-..+..-|..++++|++|... ..+-|+.+++...|...+
T Consensus 346 ~kG~~vG~~~i~~~g~~i~~v~lva~~~-v~~~~~~~~~~~~~~~~~ 391 (400)
T PRK10001 346 KKGQVVGTIDFQLNGKSIEQRPLIVMEN-VEEGGFFSRMWDFVMMKF 391 (400)
T ss_pred cCCCEEEEEEEEECCEEEEEEEeEECCc-ccccCHHHHHHHHHHHHH
Confidence 5689999999999999999999999865 577899999988877654
No 183
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=20.61 E-value=1e+02 Score=39.79 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=6.2
Q ss_pred ceeecceeee
Q 000372 657 KILTVSKFEI 666 (1609)
Q Consensus 657 kvFSpSeFEa 666 (1609)
+.|++.+|.+
T Consensus 85 ktyh~~cf~c 94 (670)
T KOG1044|consen 85 KTYHPKCFSC 94 (670)
T ss_pred ceecccccee
Confidence 5677777643
No 184
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=39 Score=44.90 Aligned_cols=40 Identities=30% Similarity=0.681 Sum_probs=32.0
Q ss_pred cccccccCCCCCcEeeC-CCCCcCCCCcCCCCCCCCCCCCCccccc
Q 000372 718 DDTCGICGDGGDLICCD-GCPSTFHQSCLDIQMLPPGDWHCPNCTC 762 (1609)
Q Consensus 718 DDvC~VCGDGGdLLcCD-gCprAFH~~CLdpp~VP~GdW~Cp~C~C 762 (1609)
...|..|+..=++.... .|..+||+.|+. +++--||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 35899999887766665 599999999997 56677888863
Done!