Query 000372
Match_columns 1609
No_of_seqs 350 out of 1658
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 17:00:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000372.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_150-153//hhsearch_pdb/000372hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ask_A E3 ubiquitin-protein li 1.0 1 1 127.5 7.5 134 609-761 66-223 (226)
2 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 127.4 7.8 93 715-821 4-102 (111)
3 4gne_A Histone-lysine N-methyl 1.0 1 1 127.0 6.5 91 712-819 9-101 (107)
4 2kwj_A Zinc finger protein DPF 1.0 1 1 125.2 4.3 93 719-825 2-110 (114)
5 3v43_A Histone acetyltransfera 1.0 1 1 119.7 3.5 92 717-821 4-110 (112)
6 2lbm_A Transcriptional regulat 1.0 1 1 105.8 0.4 96 648-763 13-117 (142)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 103.9 3.9 50 713-762 2-53 (207)
8 3o36_A Transcription intermedi 1.0 1 1 101.2 4.6 47 716-762 2-50 (184)
9 2ro1_A Transcription intermedi 1.0 1 1 95.0 4.4 46 718-763 2-49 (189)
10 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 94.4 5.4 50 713-762 20-71 (88)
No 1
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=127.51 Aligned_cols=134 Identities=27% Similarity=0.502 Sum_probs=84.2
Q ss_pred CCCCHHHHHHCCCCEECCCEEEEEECCCCCEEEEEEEECCCEEECCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCCC
Q ss_conf 98414445520492000564998404565203331562498020788944524200122488544665026506994310
Q 000372 609 GKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLL 688 (1609)
Q Consensus 609 ~kRTVLSWLID~G~V~~~~KV~Y~n~k~~kvlLeG~It~dGI~C~CC~kvfSpSeFEaHAGsk~rkPYaNIyLedG~SLl 688 (1609)
+.|+.+.| ..+. ..+++|.|++-..+..+|++..+-| -...-..+.+.++++|+|+ |.+|.
T Consensus 66 rar~~~~~----~~l~-~g~~vm~nyn~~~~~~~G~~y~~~I-------------~~~~~~r~~~~~~a~i~l~-g~sl~ 126 (226)
T 3ask_A 66 RARTIIKW----QDLE-VGQVVMLNYNPDNPKERGFWYDAEI-------------SRKRETRTARELYANVVLG-DDSLN 126 (226)
T ss_dssp CCCCBCCG----GGCC-TTCEEEEEECTTSTTSCCEEEEEEE-------------EEEEECSSCEEEEEEEECS-SSEEE
T ss_pred CCCCCCCC----CCCC-CCCEEEEECCCCCCCCCCCEEEHHH-------------HHHHHCCCCCCEEEEEEEC-CCCCC
T ss_conf 30024780----0156-4729998346688553673542554-------------3134023312224688766-87543
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC--------------CCC----CCCCCCCCCC---CCCCEEECCCCCCCCCCCCCC
Q ss_conf 1223200122222235976667788--------------876----6663320077---797275079999678986887
Q 000372 689 QCQIDAWNKLKESESIGFESVDVDG--------------DDP----NDDTCGICGD---GGDLICCDGCPSTFHQSCLDI 747 (1609)
Q Consensus 689 eCqIeAwnkqeksEk~Gf~sV~~dg--------------dd~----NdD~C~VCgD---GGdLLcCDgCPsAFH~~CLgl 747 (1609)
.|++.+......++..+......+. ++. .+..|.+|+. ++.||+||+|+++||++||+|
T Consensus 127 ~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 127 DCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 206 (226)
T ss_dssp EEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--C
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCC
T ss_conf 41578731433211335553333463334578644323578677668888868899799987688389994100756788
Q ss_pred C--CCCCC-CCCCCCCC
Q ss_conf 7--79999-97796653
Q 000372 748 Q--MLPPG-DWHCPNCT 761 (1609)
Q Consensus 748 p--~VP~G-dW~Cp~C~ 761 (1609)
| .+|.| +|+|+.|.
T Consensus 207 PL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 207 PLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CCCSCCSSSCCCCGGGC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 74569899887893874
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=127.41 Aligned_cols=93 Identities=35% Similarity=0.920 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 7666633200777972---7507999967898688777--999997796653-222478899998898899874011776
Q 000372 715 DPNDDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCAM 788 (1609)
Q Consensus 715 d~NdD~C~VCgDGGdL---LcCDgCPsAFH~~CLglp~--VP~GdW~Cp~C~-CkiCG~~~~dseeed~~Svs~LL~CdQ 788 (1609)
..|+++|.+|+++|++ |+|+.|+++||+.||+++. ++.+.|+|+.|. |.+|+....+ ..++.|++
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ll~Cd~ 74 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGED---------SKMLVCDT 74 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCC---------TTEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEEECCC
T ss_conf 899799957899888758859999997739677088655445668658767826234765898---------77658999
Q ss_pred CHHHCCCCCHHCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 401012320000122223779973606186455
Q 000372 789 CEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 789 CERaYHv~CLq~~d~l~~el~p~~~WFCskeCk 821 (1609)
|.++||..|+.+. +...+.+.|||. .|.
T Consensus 75 C~~~yH~~Cl~pp----l~~~P~g~W~C~-~C~ 102 (111)
T 2ysm_A 75 CDKGYHTFCLQPV----MKSVPTNGWKCK-NCR 102 (111)
T ss_dssp SCCEEEGGGSSSC----CSSCCSSCCCCH-HHH
T ss_pred CCCHHHHHHCCCC----CCCCCCCCCCCC-CCC
T ss_conf 9808869865876----566889882992-882
No 3
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=126.98 Aligned_cols=91 Identities=31% Similarity=0.738 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 88876666332007779727507--9999678986887779999977966532224788999988988998740117764
Q 000372 712 DGDDPNDDTCGICGDGGDLICCD--GCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMC 789 (1609)
Q Consensus 712 dgdd~NdD~C~VCgDGGdLLcCD--gCPsAFH~~CLglp~VP~GdW~Cp~C~CkiCG~~~~dseeed~~Svs~LL~CdQC 789 (1609)
++...++++|.+|+++|+||+|| .||++||+.||++..+|.|.|+||.|.|..|+.... +.|..|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~-------------~~C~~C 75 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAV-------------SFCEFC 75 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCC-------------EECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-------------CCCCCC
T ss_conf 8868897999847997847577999999265225186875799888898999881779898-------------674778
Q ss_pred HHHCCCCCHHCCCCCCCCCCCCCCEEECCC
Q ss_conf 010123200001222237799736061864
Q 000372 790 EKKYHKLCMQEMDALSDNLTGLVTSFCGRK 819 (1609)
Q Consensus 790 ERaYHv~CLq~~d~l~~el~p~~~WFCske 819 (1609)
.++||..|+... +...+...|+|+.+
T Consensus 76 p~sfC~~c~~g~----l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 76 PHSFCKDHEKGA----LVPSALEGRLCCSE 101 (107)
T ss_dssp SCEECTTTCTTS----CEECTTTTCEECTT
T ss_pred CCCHHHHCCCCC----CEECCCCCCEECCC
T ss_conf 710112115873----11027889666677
No 4
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=125.15 Aligned_cols=93 Identities=28% Similarity=0.711 Sum_probs=74.0
Q ss_pred CCCCCCCC----------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63320077----------7972750799996789868877-----799999779665-3222478899998898899874
Q 000372 719 DTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTSA 782 (1609)
Q Consensus 719 D~C~VCgD----------GGdLLcCDgCPsAFH~~CLglp-----~VP~GdW~Cp~C-~CkiCG~~~~dseeed~~Svs~ 782 (1609)
+.|.+|.. +++||+|+.|+++||..||+++ .+|.+.|+|+.| .|.+|+....+ ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND---------DQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT---------TT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 808658897534446799999869298998323213878466431168775175662733756346888---------74
Q ss_pred EECCCCCHHHCCCCCHHCCCCCCCCCCCCCCEEECCCCHHHHH
Q ss_conf 0117764010123200001222237799736061864554599
Q 000372 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1609)
Q Consensus 783 LL~CdQCERaYHv~CLq~~d~l~~el~p~~~WFCskeCkeI~e 825 (1609)
|+.|+.|+++||..|+.+ ++...|.+.|||. .|...+.
T Consensus 73 ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 73 LLFCDDCDRGYHMYCLNP----PVAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp EEECSSSCCEEETTTSSS----CCSSCCSSCCCCH-HHHHHHH
T ss_pred EEECCCCCCCCCCCCCCC----CCCCCCCCCEECC-CCCCHHH
T ss_conf 577489894102504598----7467889781992-4103442
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=119.67 Aligned_cols=92 Identities=26% Similarity=0.633 Sum_probs=72.7
Q ss_pred CCCCCCCCCC---------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6663320077---------7972750799996789868877-----799999779665-322247889999889889987
Q 000372 717 NDDTCGICGD---------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTS 781 (1609)
Q Consensus 717 NdD~C~VCgD---------GGdLLcCDgCPsAFH~~CLglp-----~VP~GdW~Cp~C-~CkiCG~~~~dseeed~~Svs 781 (1609)
+..+|.+|.. +++||.|++|+++||..||++. .++.+.|+|+.| .|.+|+..+.+. .
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~--------~ 75 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNA--------D 75 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTT--------C
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------C
T ss_conf 67613103893342768991116375344998897035388899987542465301177544666868885--------6
Q ss_pred CEECCCCCHHHCCCCCHHCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 4011776401012320000122223779973606186455
Q 000372 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1609)
Q Consensus 782 ~LL~CdQCERaYHv~CLq~~d~l~~el~p~~~WFCskeCk 821 (1609)
.++.|++|+++||..|+.+. +...+.+.|||. .|+
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p~----l~~~P~~~W~C~-~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDPP----LTRMPKGMWICQ-ICR 110 (112)
T ss_dssp CCEECTTTCCEECGGGCSSC----CSSCCSSCCCCT-TTS
T ss_pred CEEECCCCCCEEECCCCCCC----CCCCCCCCEECC-CCC
T ss_conf 56874899891566358999----898999885797-878
No 6
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=105.84 Aligned_cols=96 Identities=24% Similarity=0.567 Sum_probs=65.9
Q ss_pred CCEEECCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98020788944524200122488544665026506994310122320012222223597666778887666633200777
Q 000372 648 DGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDG 727 (1609)
Q Consensus 648 dGI~C~CC~kvfSpSeFEaHAGsk~rkPYaNIyLedG~SLleCqIeAwnkqeksEk~Gf~sV~~dgdd~NdD~C~VCgDG 727 (1609)
++|.|.+|...+++.++ .-....|+..+.+ ...|....... ++ ..+++.++++|.+|++|
T Consensus 13 ~~i~Ct~Cg~~~~~~q~----~~~~~HPll~v~~-----C~~C~~~y~~~-------~~----~~d~Dg~~d~C~vC~~G 72 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQK----DSIYRHPSLQVLI-----CKNCFKYYMSD-------DI----SRDSDGMDEQCRWCAEG 72 (142)
T ss_dssp CCCBCTTTCSBSTTTCS----SSEEEETTTTEEE-----EHHHHHHHHHS-------CC----CBCTTSCBCSCSSSCCC
T ss_pred CCCEECCCCCCCCCCCC----CCHHCCCCCCCCC-----CHHHHHHHHCC-------CC----EECCCCCCCEECCCCCC
T ss_conf 79885489986565456----6321298756642-----47789887237-------81----31688887800003999
Q ss_pred CCCEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCC
Q ss_conf 9727507999967898688777---------99999779665322
Q 000372 728 GDLICCDGCPSTFHQSCLDIQM---------LPPGDWHCPNCTCK 763 (1609)
Q Consensus 728 GdLLcCDgCPsAFH~~CLglp~---------VP~GdW~Cp~C~Ck 763 (1609)
|+|+|||.||++||..||.++. .|.++|+|+.|.+.
T Consensus 73 G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 73 GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCC
T ss_conf 847868998973127454888873666542468999882126685
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=103.92 Aligned_cols=50 Identities=48% Similarity=1.242 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 887666633200777972750799996789868877--79999977966532
Q 000372 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1609)
Q Consensus 713 gdd~NdD~C~VCgDGGdLLcCDgCPsAFH~~CLglp--~VP~GdW~Cp~C~C 762 (1609)
.++.++++|.+|+++|+||+||+|+++||+.||+|+ .+|.|+|+|+.|.-
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 8788889898889999367769999843871589998888998878684268
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=101.18 Aligned_cols=47 Identities=45% Similarity=1.225 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 666633200777972750799996789868877--79999977966532
Q 000372 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1609)
Q Consensus 716 ~NdD~C~VCgDGGdLLcCDgCPsAFH~~CLglp--~VP~GdW~Cp~C~C 762 (1609)
+|+++|.+|+++|+||+||+|+++||..||.|+ .+|.|+|+|+.|..
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9999541179999056629999530811368987879998878925568
No 9
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=94.96 Aligned_cols=46 Identities=30% Similarity=0.821 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 6633200777972750799996789868877--799999779665322
Q 000372 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (1609)
Q Consensus 718 dD~C~VCgDGGdLLcCDgCPsAFH~~CLglp--~VP~GdW~Cp~C~Ck 763 (1609)
++.|.+|+++|+||+||+|+++||+.|+.|+ .+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 882764799994568999983331022898756689987889270477
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=94.42 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 887666633200777972750799996789868877--79999977966532
Q 000372 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1609)
Q Consensus 713 gdd~NdD~C~VCgDGGdLLcCDgCPsAFH~~CLglp--~VP~GdW~Cp~C~C 762 (1609)
..+.+++.|.+|+++|+||+||.|+++||++||.|+ .+|.|+|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3388998183769999778899999724163289897878699767726448
Done!