Query 000374
Match_columns 1608
No_of_seqs 305 out of 731
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 2E-145 4E-150 1350.7 62.6 1469 1-1595 9-1608(1610)
2 PLN03076 ARF guanine nucleotid 100.0 3E-130 5E-135 1313.2 101.3 1034 5-1115 12-1513(1780)
3 KOG0929 Guanine nucleotide exc 100.0 2.9E-92 6.2E-97 906.2 55.2 980 14-1114 11-1321(1514)
4 KOG0928 Pattern-formation prot 100.0 2E-71 4.2E-76 697.3 68.2 990 28-1108 44-1352(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 2.6E-28 5.6E-33 264.2 17.4 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.6 1E-13 2.2E-18 180.8 26.7 707 254-1089 27-1011(1024)
7 KOG1848 Uncharacterized conser 98.7 4.3E-07 9.2E-12 117.8 19.1 470 1052-1573 9-565 (1610)
8 KOG1846 Uncharacterized conser 98.7 6.4E-06 1.4E-10 101.6 27.8 412 662-1109 846-1350(1777)
9 PF09324 DUF1981: Domain of un 98.6 7.1E-09 1.5E-13 99.0 1.1 62 766-827 5-86 (86)
10 PLN03076 ARF guanine nucleotid 98.6 0.00092 2E-08 94.0 49.8 533 923-1596 1129-1775(1780)
11 KOG0929 Guanine nucleotide exc 86.1 10 0.00022 53.2 15.3 154 611-810 1063-1226(1514)
12 PTZ00429 beta-adaptin; Provisi 84.6 1.7E+02 0.0036 39.7 30.9 139 20-170 151-300 (746)
13 PF01602 Adaptin_N: Adaptin N 80.7 54 0.0012 42.3 18.6 124 5-142 113-241 (526)
14 PF02985 HEAT: HEAT repeat; I 72.0 7.1 0.00015 29.8 4.2 28 933-960 2-29 (31)
15 PF03378 CAS_CSE1: CAS/CSE pro 71.2 1.2E+02 0.0025 38.5 17.0 270 735-1073 68-352 (435)
16 PF01602 Adaptin_N: Adaptin N 69.9 3.2E+02 0.0069 35.2 21.5 100 51-161 80-179 (526)
17 PTZ00429 beta-adaptin; Provisi 65.8 4.8E+02 0.01 35.5 27.3 125 255-399 270-397 (746)
18 PF12719 Cnd3: Nuclear condens 65.2 80 0.0017 37.8 13.5 21 943-963 76-96 (298)
19 PF12348 CLASP_N: CLASP N term 64.7 1.1E+02 0.0025 34.6 14.1 104 254-368 23-126 (228)
20 PF08427 DUF1741: Domain of un 60.0 2.4E+02 0.0052 32.7 15.2 67 924-990 58-135 (237)
21 KOG0930 Guanine nucleotide exc 55.9 8.3 0.00018 44.0 2.6 21 439-459 152-172 (395)
22 PF12348 CLASP_N: CLASP N term 49.4 4.3E+02 0.0094 29.8 19.8 110 932-1090 95-207 (228)
23 PF12719 Cnd3: Nuclear condens 48.7 1.5E+02 0.0033 35.4 12.0 72 14-85 69-149 (298)
24 KOG1949 Uncharacterized conser 48.3 2.4E+02 0.0052 37.0 13.5 109 942-1091 185-294 (1005)
25 PF11640 TAN: Telomere-length 45.8 2.2E+02 0.0047 30.6 11.5 50 937-987 10-61 (155)
26 PF12755 Vac14_Fab1_bd: Vacuol 39.6 1.7E+02 0.0037 29.0 8.6 58 854-959 38-95 (97)
27 PF10521 DUF2454: Protein of u 38.9 5.1E+02 0.011 30.7 14.3 160 924-1113 112-274 (282)
28 PF02985 HEAT: HEAT repeat; I 38.7 68 0.0015 24.4 4.5 28 739-766 1-28 (31)
29 PF09324 DUF1981: Domain of un 37.3 90 0.0019 30.1 6.2 53 1028-1086 33-85 (86)
30 KOG2274 Predicted importin 9 [ 34.7 1.2E+02 0.0026 40.7 8.4 96 262-364 547-645 (1005)
31 PF10508 Proteasom_PSMB: Prote 34.7 3.2E+02 0.0068 35.4 12.5 133 22-162 90-230 (503)
32 PF12830 Nipped-B_C: Sister ch 34.0 1.4E+02 0.003 33.2 8.0 89 49-142 7-96 (187)
33 PF08167 RIX1: rRNA processing 32.0 6.1E+02 0.013 27.5 12.4 101 262-374 4-110 (165)
34 PF10521 DUF2454: Protein of u 29.8 1E+03 0.022 28.3 16.4 67 1022-1092 85-151 (282)
35 PF05004 IFRD: Interferon-rela 29.6 1.1E+03 0.023 28.5 19.8 155 1028-1194 58-214 (309)
36 KOG0931 Predicted guanine nucl 28.9 38 0.00081 41.5 2.5 18 439-456 289-306 (627)
37 KOG1993 Nuclear transport rece 28.6 1.6E+03 0.036 30.4 18.9 120 932-1094 527-649 (978)
38 KOG2171 Karyopherin (importin) 28.2 5.5E+02 0.012 35.9 13.0 127 12-142 121-257 (1075)
39 smart00222 Sec7 Sec7 domain. D 28.1 44 0.00096 37.1 2.8 22 438-459 93-114 (187)
40 PF14500 MMS19_N: Dos2-interac 27.9 1.1E+03 0.023 27.9 16.2 64 784-850 107-171 (262)
41 cd00171 Sec7 Sec7 domain; Doma 27.8 43 0.00094 37.1 2.7 21 439-459 93-113 (185)
42 KOG2023 Nuclear transport rece 27.3 1.6E+03 0.035 29.9 23.2 100 1024-1139 760-859 (885)
43 PF11864 DUF3384: Domain of un 26.5 1.4E+03 0.031 29.1 21.3 40 813-854 190-229 (464)
44 PF08767 CRM1_C: CRM1 C termin 25.0 4.2E+02 0.0091 32.1 10.6 131 927-1093 67-198 (319)
45 cd00020 ARM Armadillo/beta-cat 24.3 2E+02 0.0043 28.2 6.6 69 13-81 11-80 (120)
46 KOG1766 Enhancer of rudimentar 23.6 1.3E+02 0.0027 29.3 4.4 47 1023-1069 16-65 (104)
47 PF04826 Arm_2: Armadillo-like 23.6 7.5E+02 0.016 29.0 11.9 130 9-142 12-144 (254)
48 PF01369 Sec7: Sec7 domain; I 22.4 63 0.0014 36.0 2.7 23 438-460 96-118 (190)
49 cd00020 ARM Armadillo/beta-cat 20.6 1.7E+02 0.0038 28.7 5.3 105 50-162 7-119 (120)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-145 Score=1350.74 Aligned_cols=1469 Identities=30% Similarity=0.353 Sum_probs=1101.1
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhcCCCCCc----ccC-chhHHHHHHHHhcCCCchHHHHHHHHHH
Q 000374 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1608)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~----l~~-~~~~l~Pfllac~sk~~Kl~~iaL~~lq 75 (1608)
|+++++|.+||++|++||||||++||+|||+++.+||+..+.++ +.. +++|+.||++||.+||.|++.+||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999998865 444 8999999999999999999999999999
Q ss_pred HHHccCCCCcchHHHH-HHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhhhhcccccChHHHHHHH
Q 000374 76 KLISHDAVAPSALKEI-FSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1608)
Q Consensus 76 kLi~~~~i~~~~l~~I-l~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sks~~~v~~TA 154 (1608)
||+.|++++++...++ -+.||.+... |.+|||+||++|.++++|...++|+.|.+++.+||+||. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 9999999999654444 4555544333 568999999999999999999999999999999999976 5778 999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCCCCCcccccccccccccccCCCCccccccccCCCccchhchhhhHHHHHHHHH
Q 000374 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1608)
Q Consensus 155 ~ATL~Qlv~~VFdrv~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~lf~ 234 (1608)
+||+||+|..|||||..+.+. ++..-+...+...... +......+++..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence 999999999999999864321 1100000000000000 00013456788899999999
Q ss_pred HHHhhhcCCCCCcc-cccchhhHhhHHHHHHHHHhCchhhccCHhhH--HHHHHHHHHHHHHhhccccc-----------
Q 000374 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE----------- 300 (1608)
Q Consensus 235 dLc~L~~~~~p~~l-~~~~l~~~~~LELiesvL~n~~~~F~~h~el~--~llr~~lc~lLi~~ls~n~~----------- 300 (1608)
++|.+..+..++|| .+.+.++..|+|++|+++.+....+..|.+|. ++++..+||++.|++..++.
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 68899999999999999999999999999999 99999999999997754421
Q ss_pred ------------------CCCCCCcccHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 000374 301 ------------------NEGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1608)
Q Consensus 301 ------------------~~~~~~~~~F~--~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l~~~~~~w~r~L~LEvl 360 (1608)
..+..+...|+ .-..+.+......|-..+-.++++|++.+.++-+.+.+.|+|.+.+|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 00000111111 1133444455555677888999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhhcccc-------cccchhhHHhhhc-cccCcccccccccccC
Q 000374 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1608)
Q Consensus 361 ~~l~~dp~ll~~iy~~YD~~~~~~nI~~~li~~L~~~~~~~~~-------~~~s~e~l~~~~g-~~~~k~kGi~~~l~~d 432 (1608)
++++.+++.++.+++|+||++.++++++..+..+.+++.-..+ ++...++.+.+.| .|..|.+||+|-.+.|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 9999999999999999999999999999999999998874322 1222223333344 7888889999876655
Q ss_pred cCCCcccCCchhhHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCccCCC-chhHHHHHHHHhhHHHHHHHH
Q 000374 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMGE-TAVLCISMVDSLWLTILDALS 511 (1608)
Q Consensus 433 ~~~~~~ll~~Ea~~I~~~~e~la~~i~tv~~ltd~~~~~g~~~~p~~~~~~~~~~~~~-~~~~~~~m~~~~W~~iLaalS 511 (1608)
+....+++--+.-.+..+.|++..+.++++.+.+.+.+.+.+..+.....+.....++ ...+...++.+.|..++++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalk 541 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALK 541 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhh
Confidence 4322222211222223333444333344444322222222111111111111111111 234566789999999999999
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHHHHhccCCCCcccccc-cccCCCCCC------------
Q 000374 512 LILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR------------ 578 (1608)
Q Consensus 512 ~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~sLck~t~~~~~~~~~~~~-~~~spg~~~------------ 578 (1608)
..+..+.|+.+.+.++.+++.++..||+.+-+++..+++..||+|....|...+.... +..+|..++
T Consensus 542 s~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfet 621 (1610)
T KOG1848|consen 542 STLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFET 621 (1610)
T ss_pred hhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEee
Confidence 9999999999999999999999999999999999999999999999754422111000 001110000
Q ss_pred -------------c-cccccccCCcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHhHHhhcC-CCCCcccccc
Q 000374 579 -------------S-ESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVST 643 (1608)
Q Consensus 579 -------------~-~~~~~~~~~~~l~~Kni~~lraLl~La~~lG~~L~~sW~~IL~tlq~l~~~l~~-p~~~~~~~~~ 643 (1608)
. -.++....++.++.||+++.|+++++++.+-..++.+|..++.|...+++.... |..+.+.+.+
T Consensus 622 w~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t 701 (1610)
T KOG1848|consen 622 WDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVIT 701 (1610)
T ss_pred ccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHh
Confidence 0 001112356789999999999999999999999999999999999999998765 6655544433
Q ss_pred ccccccccc----cCccchhhHHHHhhHHHhhhccCCCHHHHHHHHHHHHHhhHHhhhCCCCCCCCCCCCCCCCe--eeh
Q 000374 644 ASSKLARES----SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSI--SFS 717 (1608)
Q Consensus 644 ~~p~~~~~~----~~~~~dl~il~si~~~LFesS~~L~~esl~~~i~ALc~lS~~~l~~~~~~~~~~~~~~~~~~--~F~ 717 (1608)
..+.-+.++ ...+.|..+++++.+++|++++.++..++..++.||.+++.+.+........ ...| .|.
T Consensus 702 ~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~------sslr~~~~~ 775 (1610)
T KOG1848|consen 702 SSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSC------SSLRFLDSK 775 (1610)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccc------cccccccch
Confidence 333333322 1345687889999999999999999999999999999999986654332100 0011 133
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--------------------hh--CCccc
Q 000374 718 VERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICA--------------------VL--GSEKF 775 (1608)
Q Consensus 718 L~kL~ev~l~N~~R~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~l~~~--------------------~L--~~~~~ 775 (1608)
++-.+-+...|-.|....|+...+||...+++--.+++..+.-++...+.. ++ ...++
T Consensus 776 l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~ 855 (1610)
T KOG1848|consen 776 LDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRG 855 (1610)
T ss_pred hhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCcc
Confidence 444444444555566666777777777766665555555554444322100 00 11133
Q ss_pred hhhhhhccc---chhcccCcccCCChHHHHHHHhhhhhc---cchHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 000374 776 QDSASRQRG---TSDERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGA 849 (1608)
Q Consensus 776 q~~~l~~l~---~IL~~~g~~l~sgW~~If~IL~~v~~~---~~~~lv~~aF~~LqlI~~Dfl~~Lp~~~~~~~V~~L~~ 849 (1608)
.+++.+.++ .|||++|+.+-+||..||++|+++++. +++++|+.||++|++|++|||++||.+|+..|||++..
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 334444444 468999999999999999999998764 58899999999999999999999999999999999999
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHhccCCCchhhhhhhhcccCCCccccCcchhhhhhcccccccCCCCcchhhhhhH
Q 000374 850 YSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLL 929 (1608)
Q Consensus 850 F~~q~~d~NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW 929 (1608)
|++|++|+||||||||+||+++||+++++. +..++...++ ..|+..+.. +.+-..++.+|
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss~------~~~~~l~e~lw 995 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSSM------KSKEILPEVLW 995 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhcccc------cchhhhhhHHH
Confidence 999999999999999999999999997421 1111111111 111111111 12234578999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCc
Q 000374 930 FAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGK 1009 (1608)
Q Consensus 930 ~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~ 1009 (1608)
+.||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+...... .+||+++++
T Consensus 996 i~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ewngkei------ 1065 (1610)
T KOG1848|consen 996 IMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEWNGKEI------ 1065 (1610)
T ss_pred HHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhhcchhH------
Confidence 9999999999999999999999999999999999999999999999999999999886321 356666542
Q ss_pred cchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHh
Q 000374 1010 AVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVL 1089 (1608)
Q Consensus 1010 ~~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~ 1089 (1608)
+|||.||.+++++|++|+|..||..|..+.+|.+.|+.+|+|+.++....+.+++.++++|||+++.
T Consensus 1066 -------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1066 -------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred -------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChh---HHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHH--HHHhhCCHHHHHHHHHHHHHHHHc
Q 000374 1090 SHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFDDRMYGQLLAIIDLAVRQ 1164 (1608)
Q Consensus 1090 ~~~~~~~~~~~---~~~~~~~~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~~~~~~~~~l~il~~~~~~ 1164 (1608)
.....++++.. ....++..|+.++..++.+..++..++.||.+++|+..|+ .+++.+..+.++..+..++.++.|
T Consensus 1133 sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~~e~~~~slll~~kai~y 1212 (1610)
T KOG1848|consen 1133 SIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFGIEEIKDSLLLVRKAIFY 1212 (1610)
T ss_pred HHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchhHHHHHHHHHHhhhcccc
Confidence 99999888776 5566777888777777666666678999999999998888 455677789999999999999999
Q ss_pred cCCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHcccCCCCCCC--CCCCCCCCCCCCCCccccccc
Q 000374 1165 TMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKEDEEEPPSTSDNIHDVHV 1242 (1608)
Q Consensus 1165 ~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~~~~~~~~t~~~~~~~~~ 1242 (1608)
|.++. +..|..+ ||+|.+|++.++.+-++. ...+|..++.....+.+.+|.-. ++.. +++.
T Consensus 1213 p~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~-~~g~------------ 1275 (1610)
T KOG1848|consen 1213 PESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL-GPGL------------ 1275 (1610)
T ss_pred CCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc-CCCC------------
Confidence 98776 8888776 889999999999998843 45666677777666666665322 1110 0000
Q ss_pred ccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhcchhHHHHHhhccccccc-CCCC
Q 000374 1243 RTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTR-RDNP 1321 (1608)
Q Consensus 1243 ~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~i~~~l~~~~~~k-~~~~ 1321 (1608)
+..-.++-|...+ + ..-...+.-++++.++-....+++++.+.++--+++...-+.+++-+. +++|
T Consensus 1276 ~~~e~~~das~et----l---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ev~~rlkr~~~t~~r~np 1342 (1610)
T KOG1848|consen 1276 PKEEKTIDASLET----L---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLEVPMRLKRRCPTASRVNP 1342 (1610)
T ss_pred chhhhcccchhhh----h---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHHHHHHHHHHcccccccCC
Confidence 0000000000000 0 000112333888888877777888888877766666666666554444 8889
Q ss_pred CCcchHHHHHHHHHHHHHhhHhHhhh-----hcccccCChHHHHHhHHHHHHHhhhhhcccCC-C--CCCCCCCChhhcc
Q 000374 1322 DSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYCG-R--ALPSNSLSAVALS 1393 (1608)
Q Consensus 1322 ~~~~Wk~a~~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~~-~--~~~~~~~~~~~~~ 1393 (1608)
+.|+|++|..+|++..-.+....... ....+.+...+...+|++..|++++++.++|+ + +..+..++.....
T Consensus 1343 e~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd~e~~~~ksl~l~a~~~l 1422 (1610)
T KOG1848|consen 1343 ELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCDFENSSLKSLHLLAKPHL 1422 (1610)
T ss_pred CCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcccccchhhhhhhccchhh
Confidence 99999999999999887775543322 00001122345567899999999999999988 3 2344556667888
Q ss_pred ccchhhchHHHHHhhhhccCCCCCCChhhhhhhHHHhhhcccCCCCCCccccccCccchhh--hHHHHHHHHhhhhcCCC
Q 000374 1394 GADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK--FSLACLHKLFSLSSSDN 1471 (1608)
Q Consensus 1394 ~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~r~r--~s~~c~d~Lf~l~s~~~ 1471 (1608)
.+|.+++++++.+++.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..| .+|.||+.||+.....
T Consensus 1423 -~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~la~~Cf~~ll~ds~s~- 1499 (1610)
T KOG1848|consen 1423 -QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFRLAVDCFSILLDDSNSS- 1499 (1610)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHHHHHHHHHHHHHhcchh-
Confidence 999999999999999999999999999999999999999988 77777777777777666 5666999999877531
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHHhcccCcccccCCCCCcccccc
Q 000374 1472 EASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSG 1551 (1608)
Q Consensus 1472 ~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~Pr~r~~El~~vL~~l~~L~~~~~~~~~~~~~~~~~~~ 1551 (1608)
.+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++|++|..|.... +.+|.+
T Consensus 1500 ----~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~~L------~~np~l--- 1566 (1610)
T KOG1848|consen 1500 ----YENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPSLL------YSNPIL--- 1566 (1610)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhhcc------ccCchh---
Confidence 2348999999999999999999999999999999999999999999999999999998883 122221
Q ss_pred cccCcCCCcccchhhhhhhhhhheecchhHHHHHHHHH--HHHHhh
Q 000374 1552 LAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1595 (1608)
Q Consensus 1552 ~~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1595 (1608)
. +..++.||..|+|.+|+.++++.+++....|.+ .+.+..
T Consensus 1567 ---~-n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1567 ---Y-NLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred ---h-hHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence 1 267899999999999999987777766555543 444443
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=2.5e-130 Score=1313.21 Aligned_cols=1034 Identities=22% Similarity=0.331 Sum_probs=779.6
Q ss_pred HHHHHHHHHHHH-HHhhcChhHHHHHHHHHHHHhcCCCCC--------------c--------------ccCchhHHHHH
Q 000374 5 AVLESDLRALSA-EARRRYPAVKDGAEHAILKLRSLSSPS--------------E--------------LAQSEDILRIF 55 (1608)
Q Consensus 5 ~~L~~dL~~L~~-EskRK~~~lk~A~e~al~~Lk~~~~~~--------------~--------------l~~~~~~l~Pf 55 (1608)
.++.+-|..+++ -..|||+++|+||+++++.|+.....+ . ..+++.++.||
T Consensus 12 ~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl 91 (1780)
T PLN03076 12 KVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILSPL 91 (1780)
T ss_pred HHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHHHH
Confidence 455666666663 445789999999999999999654320 0 12567799999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHccCCCCc----------chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCC
Q 000374 56 LMACEVRTVKLSVIGLSCIQKLISHDAVAP----------SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPE 125 (1608)
Q Consensus 56 llac~sk~~Kl~~iaL~~lqkLi~~~~i~~----------~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~ 125 (1608)
.+||+||++||+.+||+||||||+|++|+. ..++.+++++|+|.+.+||.|||||||+|++++++|.+.+
T Consensus 92 ~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~~v 171 (1780)
T PLN03076 92 INACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSLRI 171 (1780)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCcee
Confidence 999999999999999999999999999932 4578899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhhcccccChHHHHHHHHHHHHHHHHHHHhhhhhhcc-CCCCC----------CCCCCCccccccccc
Q 000374 126 NEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LPMGK----------FGSGAHITRTNSVTG 194 (1608)
Q Consensus 126 ~g~~L~~~L~~C~~L~~~sks~~~v~~TA~ATL~Qlv~~VFdrv~~~e~-~~~~~----------~~~~~~~~~~~~~~~ 194 (1608)
||+.|.+++++||++|..||++ ++++||+|||+|||..||+||..... .+..+ ..+..+.+.+..+++
T Consensus 172 hg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1780)
T PLN03076 172 HGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQG 250 (1780)
T ss_pred EHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccchhhhhhh
Confidence 9999999999999999999999 99999999999999999999964211 00000 000000000000000
Q ss_pred ccccc---------------------------------cCCC---------Ccc--cc-------cccc--------CCC
Q 000374 195 DVSRS---------------------------------INHS---------ESL--EH-------EFAS--------EGP 215 (1608)
Q Consensus 195 ~~~~~---------------------------------~~~~---------~~~--~~-------~~~~--------~~~ 215 (1608)
.+++. .+.+ +.. .+ ...+ +..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1780)
T PLN03076 251 FITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGEV 330 (1780)
T ss_pred hhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccccccccccccccccccccccc
Confidence 00000 0000 000 00 0000 000
Q ss_pred c-cchhc---hhhhHHHHHHHHHHHHhhhcCCCCCcc--cccch-hhHhhHHHHHHHHHhCchhhccCHhhHHHHHHHHH
Q 000374 216 S-LRRET---LTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQIC 288 (1608)
Q Consensus 216 ~-~~~~~---~~~~~~da~~lf~dLc~L~~~~~p~~l--~~~~l-~~~~~LELiesvL~n~~~~F~~h~el~~llr~~lc 288 (1608)
. ..... .....+|||+||+.||+|+.++.|.-- +...+ +|.++||||.++|+|+|++|.+||.|++++|++||
T Consensus 331 ~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc 410 (1780)
T PLN03076 331 EKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLC 410 (1780)
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHH
Confidence 0 00000 122579999999999999998766321 22345 99999999999999999999999999999999999
Q ss_pred -HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhccCC-Cc-HHHHHHHHHHHHHHh
Q 000374 289 -SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLV-KVTFLD-LP-LWHRILVLEILRGFC 364 (1608)
Q Consensus 289 -~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li-~~l~~~-~~-~w~r~L~LEvl~~l~ 364 (1608)
.|+..+.++ ..+.|. +++|||+.|+.+||.+||.|+|+||+.++ ++++.. .+ ..||.++||+|.+||
T Consensus 411 ~sL~~n~~S~--------~~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc 481 (1780)
T PLN03076 411 LSLLKNSASS--------LMIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLC 481 (1780)
T ss_pred HHHHHHhcCC--------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 555334443 356784 89999999999999999999999999865 566653 34 789999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhhcccc-----------------------------------c----c
Q 000374 365 VEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-----------------------------------Q----E 405 (1608)
Q Consensus 365 ~dp~ll~~iy~~YD~~~~~~nI~~~li~~L~~~~~~~~~-----------------------------------~----~ 405 (1608)
+||+++.+||.|||||.++.||||++++.|+|+++..+. + +
T Consensus 482 ~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~ 561 (1780)
T PLN03076 482 VDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPD 561 (1780)
T ss_pred hCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999873210 0 0
Q ss_pred c-----ch--------------------------------------hh----------HHhhhccccCccc-cccccccc
Q 000374 406 T-----SE--------------------------------------ES----------LSAVAGMFSSKAK-GIEWILDN 431 (1608)
Q Consensus 406 ~-----s~--------------------------------------e~----------l~~~~g~~~~k~k-Gi~~~l~~ 431 (1608)
. .+ +. ++.+...||.||| ||+|+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~ 641 (1780)
T PLN03076 562 PASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINA 641 (1780)
T ss_pred ccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHc
Confidence 0 00 00 0124567898875 99876422
Q ss_pred -----Cc------------------------------------------CCCc-----------ccCCchhhHHHHHHHH
Q 000374 432 -----DA------------------------------------------SNAA-----------VLVASEAHSITLAIEG 453 (1608)
Q Consensus 432 -----d~------------------------------------------~~~~-----------~ll~~Ea~~I~~~~e~ 453 (1608)
+| .+.+ +.+|||+|+|+|++|.
T Consensus 642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~ 721 (1780)
T PLN03076 642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEK 721 (1780)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 11 0111 1389999999999999
Q ss_pred HHHHHH------------------Hhhhc-cc-------------------ccccCCC-CCC-------------C---C
Q 000374 454 LLGVVF------------------TVATL-TD-------------------EAVDVGE-LES-------------P---R 478 (1608)
Q Consensus 454 la~~i~------------------tv~~l-td-------------------~~~~~g~-~~~-------------p---~ 478 (1608)
||+.++ ++.+| || +|+|+|+ ++. + .
T Consensus 722 Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~ 801 (1780)
T PLN03076 722 FAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMK 801 (1780)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCc
Confidence 997532 22222 22 2566663 320 0 0
Q ss_pred CCCC--------C---------------CCc----------------------c---C------CCchhHHHHHHHHhhH
Q 000374 479 CDYD--------P---------------LPK----------------------C---M------GETAVLCISMVDSLWL 504 (1608)
Q Consensus 479 ~~~~--------~---------------~~~----------------------~---~------~~~~~~~~~m~~~~W~ 504 (1608)
.|+. + +++ . . ..+..++++||+.+|+
T Consensus 802 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~ 881 (1780)
T PLN03076 802 EDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWA 881 (1780)
T ss_pred ccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHH
Confidence 0100 0 000 0 0 0124467999999999
Q ss_pred HHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHHHHhccCCCCcccccccccCCCCCCcccccc
Q 000374 505 TILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVD 584 (1608)
Q Consensus 505 ~iLaalS~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~sLck~t~~~~~~~~~~~~~~~spg~~~~~~~~~ 584 (1608)
|++||+|..|+.++|+++++.||+||+.++|+|++|||+++||+||++|||||.+.. |
T Consensus 882 p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~------------~---------- 939 (1780)
T PLN03076 882 PMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS------------P---------- 939 (1780)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC------------h----------
Confidence 999999999999999999999999999999999999999999999999999998741 1
Q ss_pred ccCCcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHhHHhhcCC-----CCC------------cccccccccc
Q 000374 585 QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSP-----HAT------------TQEVSTASSK 647 (1608)
Q Consensus 585 ~~~~~~l~~Kni~~lraLl~La~~lG~~L~~sW~~IL~tlq~l~~~l~~p-----~~~------------~~~~~~~~p~ 647 (1608)
..++.||++|+|+||+||+.+||+|++||++||+|+++++++...+ +.. .+..+...|.
T Consensus 940 ----~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~ 1015 (1780)
T PLN03076 940 ----ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPV 1015 (1780)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccc
Confidence 1278899999999999999999999999999999999999986422 100 0000001111
Q ss_pred cc---------------c---cc-------cCc--cchh-------hHHH----HhhHHHhhhccCCCHHHHHHHHHHHH
Q 000374 648 LA---------------R---ES-------SGQ--YSDF-------NVLS----SLNSQLFESSALMHISAVKSLLSALH 689 (1608)
Q Consensus 648 ~~---------------~---~~-------~~~--~~dl-------~il~----si~~~LFesS~~L~~esl~~~i~ALc 689 (1608)
.. + ++ +.. .+++ .++. ..++++|++|++|+++||++|++|||
T Consensus 1016 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~ 1095 (1780)
T PLN03076 1016 LKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALC 1095 (1780)
T ss_pred cccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 10 0 00 000 0111 1111 23489999999999999999999999
Q ss_pred HhhHHhhhCCCCCCCCCCCCCCCCeeehHHHHHHHHHhhccc----chhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 000374 690 QLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQS 765 (1608)
Q Consensus 690 ~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~l~N~~R----~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~l 765 (1608)
++|.+++..+ +.|++|+|+||+||+++||+| |..+|+.+.+||+.+|||+|..++.+|+|+|+|+
T Consensus 1096 ~vS~eEl~~~-----------~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQL 1164 (1780)
T PLN03076 1096 KVSMEELRSP-----------SDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQL 1164 (1780)
T ss_pred HhhHHHHccC-----------CCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 9999998664 247899999999999999999 8999999999999999999999999999999998
Q ss_pred H-----HHhhCCccchhhhhhcccchh--------------------cccCcccCCChHHHHHHHhhhhhccchHHHHHH
Q 000374 766 I-----CAVLGSEKFQDSASRQRGTSD--------------------ERCGEKLHYSWPSILELLRSVADASEKDLITLG 820 (1608)
Q Consensus 766 ~-----~~~L~~~~~q~~~l~~l~~IL--------------------~~~g~~l~sgW~~If~IL~~v~~~~~~~lv~~a 820 (1608)
. ..++.+++||+++++||+.|+ +.+++++++||++||+||+.++.++++.+|+.|
T Consensus 1165 s~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lA 1244 (1780)
T PLN03076 1165 SMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLA 1244 (1780)
T ss_pred HHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHH
Confidence 5 356788899999999998643 678899999999999999999998899999999
Q ss_pred HHHHHHHHhcCCCCCC---hhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHhccCCCchhhhhhhhcccCCCc
Q 000374 821 FQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVP 897 (1608)
Q Consensus 821 F~~LqlI~~Dfl~~Lp---~~~~~~~V~~L~~F~~q~~d~NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~ 897 (1608)
|+++++|++||++.+| .+||.+||+||.+|++|..++||||+|+++||.|++++.+..... . .+...... ....
T Consensus 1245 Fetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~-~-~~~~~~~~-~~~~ 1321 (1780)
T PLN03076 1245 FEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS-S-SRNKDKEA-PPSS 1321 (1780)
T ss_pred HHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc-c-cccccccc-cccc
Confidence 9999999999999777 589999999999999999999999999999999999998641100 0 00000000 0000
Q ss_pred cccCcchhhhhhcccccccCCCCcchhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 000374 898 KQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWN 977 (1608)
Q Consensus 898 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~ 977 (1608)
........+ .. ........+..+|+|||.+|.++|.|+|+|||++|++|||+||.+||+.|++++|+.|||+
T Consensus 1322 s~~~~~~~~-~~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~ 1393 (1780)
T PLN03076 1322 PQSGKDGKQ-ES-------GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFES 1393 (1780)
T ss_pred ccccccccc-cc-------cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 000000000 00 0001122346899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhhccccchHH
Q 000374 978 YVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWT 1056 (1608)
Q Consensus 978 VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lihhsr~~~~k~W~-ET~vlal~gl~~lf~~~~~~l~~l~~F~~ 1056 (1608)
||||||+.++.........++++..+++ .| .+.+.++|. ||+++|+++++++|.+||+.+..
T Consensus 1394 VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~------ 1456 (1780)
T PLN03076 1394 VLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLVVDLFVKFYPTVNP------ 1456 (1780)
T ss_pred HHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 9999999998543332211112221211 11 235678996 99999999999999999988753
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhcC
Q 000374 1057 GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQK 1115 (1608)
Q Consensus 1057 ~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~~ 1115 (1608)
.-.++|+.+..|+++.++.++..+.+||++++..++.++ +++.|+.+.+...+++..
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F--~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLF--SDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999988877 599999999999877753
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-92 Score=906.24 Aligned_cols=980 Identities=23% Similarity=0.340 Sum_probs=760.3
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhcCCCCCcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcc-------
Q 000374 14 LSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPS------- 86 (1608)
Q Consensus 14 L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~~------- 86 (1608)
|..-.+|+|+.++.+|+.+++++|+. .-.+...+.++.||.+||+||++||+..|++|+||||+|+.+...
T Consensus 11 ~~~~~~~~~s~l~~~~~~~~~~~~~~--~~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~ 88 (1514)
T KOG0929|consen 11 LADAEWRKHSKLKKACKSALEELKAN--GLSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGP 88 (1514)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcc--cCCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCc
Confidence 45566789999999999999999982 234577889999999999999999999999999999999998753
Q ss_pred ---hHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhhhhcccccChHHHHHHHHHHHHHHHH
Q 000374 87 ---ALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVA 163 (1608)
Q Consensus 87 ---~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sks~~~v~~TA~ATL~Qlv~ 163 (1608)
.+..+++++|.|.+..+|.+||+++++|++.+++..+.+||+.|..+++.||++|.+| + +.++||.|||.||+.
T Consensus 89 ~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~ 165 (1514)
T KOG0929|consen 89 EDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLN 165 (1514)
T ss_pred chhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHH
Confidence 3788999999998888999999999999999999888899999999999999999987 6 899999999999999
Q ss_pred HHHhhhhhhccCCCCCCC------CCCCcccccccc--------------cccccc-cCCC---Cc------cccc---c
Q 000374 164 LIFDHVVRAESLPMGKFG------SGAHITRTNSVT--------------GDVSRS-INHS---ES------LEHE---F 210 (1608)
Q Consensus 164 ~VFdrv~~~e~~~~~~~~------~~~~~~~~~~~~--------------~~~~~~-~~~~---~~------~~~~---~ 210 (1608)
.||.|+..+ .....+.. ...++..+..++ .++... ..++ +. .++. .
T Consensus 166 ~vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1514)
T KOG0929|consen 166 IVFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAES 244 (1514)
T ss_pred HHHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCcccc
Confidence 999999752 21110000 000011111100 000000 0000 00 0000 0
Q ss_pred cc--C-CCcc-chhchhhhHHHHHHHHHHHHhhhcCCCCCc-ccccc-h-hhHhhHHHHHHHHHhCchhhccCHhhHHHH
Q 000374 211 AS--E-GPSL-RRETLTKAGKLGLRLLEDLTALAAGGSASW-LHVNT-L-QRTFVLDILEFILSNHVSLFRMLVSYEQVL 283 (1608)
Q Consensus 211 ~~--~-~~~~-~~~~~~~~~~da~~lf~dLc~L~~~~~p~~-l~~~~-l-~~~~~LELiesvL~n~~~~F~~h~el~~ll 283 (1608)
.. + .+.. .+..-....+|||+||+.||+|+.+..+.- .+... + +|+++||||.++|+|++++|.++..|...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 245 PESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred cccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 00 0 0000 112224567899999999999998876632 12222 5 899999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHH
Q 000374 284 RHQIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FL-DLPLWHRILVLEIL 360 (1608)
Q Consensus 284 r~~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l-~~-~~~~w~r~L~LEvl 360 (1608)
|+++| .|.-+..++ -.+.| ++.+-||+.++.+|+.++|.|+|+|++.++..+ +. ..+.-|+..+|.++
T Consensus 325 kqyKOGalskn~vS~--------~~~vf-e~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~ 395 (1514)
T KOG0929|consen 325 KQYLCLALSKNSVSN--------VPMVF-ELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRIL 395 (1514)
T ss_pred HHHHHHHHhhccccc--------chHHH-HHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHH
Confidence 99999 666333332 25677 588999999999999999999999999988754 33 23567889999999
Q ss_pred HHHhcChHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhhcc--------ccc-----------------------c----
Q 000374 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------E---- 405 (1608)
Q Consensus 361 ~~l~~dp~ll~~iy~~YD~~~~~~nI~~~li~~L~~~~~~~--------~~~-----------------------~---- 405 (1608)
.++|.||+.++++|.||||+.+..|||+.+++.+.+.+++. |++ +
T Consensus 396 ~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~ 475 (1514)
T KOG0929|consen 396 TRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLN 475 (1514)
T ss_pred hhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999999999999751 110 0
Q ss_pred ------------cch----hh---------------------HHhhhccccCccc-cccccccc----------------
Q 000374 406 ------------TSE----ES---------------------LSAVAGMFSSKAK-GIEWILDN---------------- 431 (1608)
Q Consensus 406 ------------~s~----e~---------------------l~~~~g~~~~k~k-Gi~~~l~~---------------- 431 (1608)
++. .+ ++.+...||.|++ ||+++..+
T Consensus 476 ~~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~ 555 (1514)
T KOG0929|consen 476 VEGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIG 555 (1514)
T ss_pred CCCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHh
Confidence 000 00 0112346777764 87654211
Q ss_pred ----------------C---------------cCCCcc-----------cCCchhhHHHHHHHHHHHHH-----------
Q 000374 432 ----------------D---------------ASNAAV-----------LVASEAHSITLAIEGLLGVV----------- 458 (1608)
Q Consensus 432 ----------------d---------------~~~~~~-----------ll~~Ea~~I~~~~e~la~~i----------- 458 (1608)
| ..++++ .+|||+|+|+|+|++||+.+
T Consensus 556 t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFss 635 (1514)
T KOG0929|consen 556 TEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSS 635 (1514)
T ss_pred ccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 0 012222 38999999999999999732
Q ss_pred --------HHhhhc-cc-------------------ccccCCC-CCC-----------------------CC-CCC----
Q 000374 459 --------FTVATL-TD-------------------EAVDVGE-LES-----------------------PR-CDY---- 481 (1608)
Q Consensus 459 --------~tv~~l-td-------------------~~~~~g~-~~~-----------------------p~-~~~---- 481 (1608)
|++.+| || +|+|+|. ++. |. .+.
T Consensus 636 ADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~ 715 (1514)
T KOG0929|consen 636 ADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLP 715 (1514)
T ss_pred ccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcch
Confidence 344443 33 2566664 320 00 000
Q ss_pred -----CCC---------------------Ccc---------CCCchhHHHHHHHHhhHHHHHHHHhhHhhcCCHHHHHHH
Q 000374 482 -----DPL---------------------PKC---------MGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEI 526 (1608)
Q Consensus 482 -----~~~---------------------~~~---------~~~~~~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~~ 526 (1608)
++. .+. +-.+..++++||+.+|.|+++|++..|..++|......|
T Consensus 716 ~~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~c 795 (1514)
T KOG0929|consen 716 KLLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLC 795 (1514)
T ss_pred hhhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCcccccccc
Confidence 000 000 001355779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCchhHHHHHHHHHHHhccCCCCcccccccccCCCCCCccccccccCCcCCChHHHHHHHHHHHHH
Q 000374 527 LKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIA 606 (1608)
Q Consensus 527 L~gfq~~a~vag~l~L~~~rDafl~sLck~t~~~~~~~~~~~~~~~spg~~~~~~~~~~~~~~~l~~Kni~~lraLl~La 606 (1608)
++||+...|+++.++++..||||+++|.+||.++.. ..+..||+.++|+++.+|
T Consensus 796 l~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~--------------------------~e~k~kNi~aik~l~~ia 849 (1514)
T KOG0929|consen 796 LDGFRLAISIASIFSMELGRDAFVQALARFTNLHAP--------------------------SEMKQKNIDAIKALLEIA 849 (1514)
T ss_pred ccchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------------------------HHHhHhhHHHHHHHHHHh
Confidence 999999999999999999999999999999987511 127899999999999999
Q ss_pred HhhcCcccccHHHHHHHHHHhHHhhcCCCCCc-cc--------ccccccc-----ccc----cccCccchhhHHHHhhHH
Q 000374 607 HRLHNVLGPSWVLVLETLAALDRAIHSPHATT-QE--------VSTASSK-----LAR----ESSGQYSDFNVLSSLNSQ 668 (1608)
Q Consensus 607 ~~lG~~L~~sW~~IL~tlq~l~~~l~~p~~~~-~~--------~~~~~p~-----~~~----~~~~~~~dl~il~si~~~ 668 (1608)
+..|++|+.+|+.|+.|+.+++++...+.... .. .....|+ .+. +..+.......+-++ ++
T Consensus 850 ~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~ 928 (1514)
T KOG0929|consen 850 DTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DR 928 (1514)
T ss_pred hcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-hh
Confidence 99999999999999999999999854322111 10 0001110 000 000111233444455 89
Q ss_pred HhhhccCCCHHHHHHHHHHHHHhhHHhhhCCCCCCCCCCCCCCCCeeehHHHHHHHHHhhccc----chhhHHHHHHHHH
Q 000374 669 LFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFL 744 (1608)
Q Consensus 669 LFesS~~L~~esl~~~i~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~l~N~~R----~~~iW~~l~~hli 744 (1608)
+|++|..++.+++++|++|||++|.+++..+ ..|++|+++|++||+.+||.| |..+|..+.+||.
T Consensus 929 Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~-----------~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~ 997 (1514)
T KOG0929|consen 929 IFTSSQRLDSEAIVDFVKALCKVSMDELLSP-----------STPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFV 997 (1514)
T ss_pred hhcccccCCchHHHHHHHHHHHHHHHHhcCC-----------CCCCeeecccceeeeccccccchhhHHHHHHHhhhhhh
Confidence 9999999999999999999999999998664 247899999999999999998 7999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHH-----HHhhCCccchhhhhhcccchhccc-------------CcccCCChHHHHHHHh
Q 000374 745 ELADNSNQHLRNIALDALDQSI-----CAVLGSEKFQDSASRQRGTSDERC-------------GEKLHYSWPSILELLR 806 (1608)
Q Consensus 745 ~v~~~~~~~lr~~Avd~L~~l~-----~~~L~~~~~q~~~l~~l~~IL~~~-------------g~~l~sgW~~If~IL~ 806 (1608)
.++++.|..+..+|+|+|+|+. ..++.++.||+++++||+.++.+. .+++++||+.||.|++
T Consensus 998 ~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~~nikSGWk~if~i~~ 1077 (1514)
T KOG0929|consen 998 SVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCISSNIKSGWKNIFKIFT 1077 (1514)
T ss_pred ccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999984 456788999999999999877543 3588999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHhccCCCch
Q 000374 807 SVADASEKDLITLGFQSLRFIMNDGLSSIPT---DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGIS 883 (1608)
Q Consensus 807 ~v~~~~~~~lv~~aF~~LqlI~~Dfl~~Lp~---~~~~~~V~~L~~F~~q~~d~NISLtAi~llw~isD~L~~~~~~~~~ 883 (1608)
.++.+..+.++..+|+.+.-++.+++...-+ ++|.+|+.|+.+|+.+....|+|+.||.++|.+..++..+ . + .
T Consensus 1078 ~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~-~-~-~ 1154 (1514)
T KOG0929|consen 1078 TAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG-V-Y-N 1154 (1514)
T ss_pred HhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-c-c-h
Confidence 9999999999999999999999998876444 7999999999999999999999999999999999999865 1 1 0
Q ss_pred hhhhhhhcccCCCccccCcchhhhhhcccccccCCCCcchhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc
Q 000374 884 EEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG 963 (1608)
Q Consensus 884 ~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g 963 (1608)
++.. .+. .. ....|...|+|++.++..++.|.|++||+.|++.+|.|+..||
T Consensus 1155 -~~~~------------~~~--------------~~-~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g 1206 (1514)
T KOG0929|consen 1155 -EKLK------------VGK--------------DS-EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHG 1206 (1514)
T ss_pred -hhcc------------ccc--------------cc-ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhh
Confidence 0000 000 00 1234789999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHH
Q 000374 964 QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLR 1042 (1608)
Q Consensus 964 ~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lihhsr~~~~k~W~-ET~vlal~gl~~lf~ 1042 (1608)
+.|+.++|+.+|. ++||+|+.+...... ....+|. +|+++|++.++.||.
T Consensus 1207 ~~F~~~~We~v~~-~~fpIF~~~~~~~~~----------------------------~~~~eW~~tT~~~Al~~~v~lf~ 1257 (1514)
T KOG0929|consen 1207 DDFSKEFWEDVFR-ILFPIFDNVKLDEDE----------------------------SEKDEWLSTTCNHALQALVDLFT 1257 (1514)
T ss_pred hhccHHHHHHHHH-heeecccccCcccch----------------------------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999642110 1224497 999999999999999
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhc
Q 000374 1043 SFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1114 (1608)
Q Consensus 1043 ~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~ 1114 (1608)
+||+.+.. +-..++..+..|+++++..++.++.+||.+++..++.++ +++.|+.+.+....++.
T Consensus 1258 ~~~~~l~~------lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~f--se~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1258 QFFKQLNN------LLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKF--SEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHH------HHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhccccc--CHhhHHHHHHHHHHHHH
Confidence 99998762 456678888899999999999999999999999888776 58888888777765544
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-71 Score=697.26 Aligned_cols=990 Identities=20% Similarity=0.265 Sum_probs=680.5
Q ss_pred HHHHHHHHHhcCCCC-C--cccCchhHHHHHHHHhcCC--CchHHHHHHHHHHHHHccCCCCcc------hHHHHHHHHH
Q 000374 28 GAEHAILKLRSLSSP-S--ELAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIFSMLK 96 (1608)
Q Consensus 28 A~e~al~~Lk~~~~~-~--~l~~~~~~l~Pfllac~sk--~~Kl~~iaL~~lqkLi~~~~i~~~------~l~~Il~~l~ 96 (1608)
.--.++..||..-+. . +..++..||+||+..+.|. +|++|++||++++|++++++|+++ +++.++++++
T Consensus 44 ~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~Avt 123 (1386)
T KOG0928|consen 44 SLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVT 123 (1386)
T ss_pred HHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHH
Confidence 344555555543221 1 2367889999999999887 799999999999999999999985 6889999999
Q ss_pred hc----cCC-CCchHHHHHHHHHHHHHcCCC-CCCchHHHHHHHHHhhhhcccccChHHHHHHHHHHHHHHHHHHHhhhh
Q 000374 97 NH----ADM-VDESVQLKTLQTILIIFQSRL-HPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVV 170 (1608)
Q Consensus 97 ~~----~~~-~~e~vqLKILQ~L~~l~~s~~-~~~~g~~L~~~L~~C~~L~~~sks~~~v~~TA~ATL~Qlv~~VFdrv~ 170 (1608)
+| ++. +||.|.|||||+|.+++.++. ..++++.+++.+++||++.+.++-+++.+++|++||..|+..+|.|++
T Consensus 124 hcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk 203 (1386)
T KOG0928|consen 124 HCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLK 203 (1386)
T ss_pred heeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCc
Confidence 98 344 799999999999999999984 456899999999999999884444459999999999999999999998
Q ss_pred hhccCCCCC--------CC--CCCCccccccc-cccccc--c----cCCCCccccccccCC-----Cc--c--------c
Q 000374 171 RAESLPMGK--------FG--SGAHITRTNSV-TGDVSR--S----INHSESLEHEFASEG-----PS--L--------R 218 (1608)
Q Consensus 171 ~~e~~~~~~--------~~--~~~~~~~~~~~-~~~~~~--~----~~~~~~~~~~~~~~~-----~~--~--------~ 218 (1608)
+.+....++ .+ ..++...+..+ .++... + ..++.....+++... +. + .
T Consensus 204 ~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~~~ 283 (1386)
T KOG0928|consen 204 YIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAAMD 283 (1386)
T ss_pred cccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhhccc
Confidence 855211100 00 00000000000 000000 0 000000000000000 00 0 0
Q ss_pred hhchhhhHHHHHHHHHHHHhhhcCCCCCcccccchhhHhhHHHHHHHHHhCchhhccCHhhHHHHHHHHHHHHHHhhccc
Q 000374 219 RETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTN 298 (1608)
Q Consensus 219 ~~~~~~~~~da~~lf~dLc~L~~~~~p~~l~~~~l~~~~~LELiesvL~n~~~~F~~h~el~~llr~~lc~lLi~~ls~n 298 (1608)
..+..|+.+ ..|.-||.|++..++ ..+++.-+.|+|.||++.++-+|+.|+.||.|..++++.+...++.++...
T Consensus 284 ~~ygip~~~---~~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~ 358 (1386)
T KOG0928|consen 284 ENYGIPVMK---DIFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIP 358 (1386)
T ss_pred ccCCCceec---cchhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhc
Confidence 111122222 346668888887766 455677999999999999999999999999999999999997777777321
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHHHhcChHHHHHHHH
Q 000374 299 VENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLRLLFQ 375 (1608)
Q Consensus 299 ~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~~l---~~~~~~w~r~L~LEvl~~l~~dp~ll~~iy~ 375 (1608)
+..+ -.+.+.++...++..+...++.+++.+.|.|++.+..+. +...|+-+|+++||.+-.+|+.|.|+.++|.
T Consensus 359 ~k~s---~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yv 435 (1386)
T KOG0928|consen 359 TKMS---LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYV 435 (1386)
T ss_pred ccch---hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1100 023333444445556666678899999999999988876 2334678889999999999999999999999
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhh---------cccc-----------------c--ccch------h------------
Q 000374 376 NFDMNPKNTNVVEGMVKALARVVS---------SVQF-----------------Q--ETSE------E------------ 409 (1608)
Q Consensus 376 ~YD~~~~~~nI~~~li~~L~~~~~---------~~~~-----------------~--~~s~------e------------ 409 (1608)
|||||.+|.|||+++++.|+|.+- +++. + +..+ +
T Consensus 436 NfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~rk~K 515 (1386)
T KOG0928|consen 436 NFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRSRKRK 515 (1386)
T ss_pred hcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhccchhh
Confidence 999999999999999999999762 1110 0 0000 0
Q ss_pred -hHHhhhccccCcc-ccccccccc-------Cc-------------------------C---------------CCc---
Q 000374 410 -SLSAVAGMFSSKA-KGIEWILDN-------DA-------------------------S---------------NAA--- 437 (1608)
Q Consensus 410 -~l~~~~g~~~~k~-kGi~~~l~~-------d~-------------------------~---------------~~~--- 437 (1608)
-+.-++..||.+| |||+|+..+ || . ++.
T Consensus 516 ~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmrlDe 595 (1386)
T KOG0928|consen 516 RELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMRLDE 595 (1386)
T ss_pred HHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCcHHH
Confidence 0112578899987 499875321 21 1 111
Q ss_pred --------ccCCchhhHHHHHHHHHHHHHH-------------------Hhhhc-ccc-------------------ccc
Q 000374 438 --------VLVASEAHSITLAIEGLLGVVF-------------------TVATL-TDE-------------------AVD 470 (1608)
Q Consensus 438 --------~ll~~Ea~~I~~~~e~la~~i~-------------------tv~~l-td~-------------------~~~ 470 (1608)
.++|||+|+|.|++|.|++.++ ++.+| ||+ |+|
T Consensus 596 ALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n 675 (1386)
T KOG0928|consen 596 ALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGIN 675 (1386)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhccccc
Confidence 1399999999999999997432 22233 554 577
Q ss_pred CCC-CCCCC----------------CCCCCCCccC----------C----------CchhHHHHHHHHhhHHHHHHHHhh
Q 000374 471 VGE-LESPR----------------CDYDPLPKCM----------G----------ETAVLCISMVDSLWLTILDALSLI 513 (1608)
Q Consensus 471 ~g~-~~~p~----------------~~~~~~~~~~----------~----------~~~~~~~~m~~~~W~~iLaalS~~ 513 (1608)
+|+ ++... .++.|.++.. + ....++++||..+|+|++||++.+
T Consensus 676 ~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~v 755 (1386)
T KOG0928|consen 676 GGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYV 755 (1386)
T ss_pred CCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHH
Confidence 774 32110 2233322211 0 123578999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHHHHhccCCCCcccccccccCCCCCCccccccccCCcCCCh
Q 000374 514 LSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTP 593 (1608)
Q Consensus 514 l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~sLck~t~~~~~~~~~~~~~~~spg~~~~~~~~~~~~~~~l~~ 593 (1608)
|+.+.+++++++|+.||++||.++++||+.++.|..+.+|||||.+.+... +| +. ....++-+.
T Consensus 756 Fd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~--------~~-----ee---l~~~fged~ 819 (1386)
T KOG0928|consen 756 FDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS--------TP-----EE---LVLAFGEDT 819 (1386)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc--------Cc-----hH---HHHHhcccc
Confidence 999999999999999999999999999999999999999999999742210 00 00 001244578
Q ss_pred HHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHhHHhhcCCCCCc------c------cccc-----cccccccccc---
Q 000374 594 KNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------Q------EVST-----ASSKLARESS--- 653 (1608)
Q Consensus 594 Kni~~lraLl~La~~lG~~L~~sW~~IL~tlq~l~~~l~~p~~~~------~------~~~~-----~~p~~~~~~~--- 653 (1608)
|..++.+|+|-+++..|+.++.+|..|++++.++.+....|.... . ..+. +.++..++.+
T Consensus 820 ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~Lls 899 (1386)
T KOG0928|consen 820 KARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSGLLS 899 (1386)
T ss_pred hhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccchHHH
Confidence 999999999999999999999999999999999988766554310 0 0000 0011000000
Q ss_pred --------------Cccc--hh-------hHHHHh-hHHHhhhccCCCHHHHHHHHHHHHHhhHHhhhCCCCCCCCCCCC
Q 000374 654 --------------GQYS--DF-------NVLSSL-NSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQ 709 (1608)
Q Consensus 654 --------------~~~~--dl-------~il~si-~~~LFesS~~L~~esl~~~i~ALc~lS~~~l~~~~~~~~~~~~~ 709 (1608)
...+ ++ +++++. .+++|+.++++..+++..++++|...+... +..
T Consensus 900 ~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-----------s~~ 968 (1386)
T KOG0928|consen 900 RFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL-----------SME 968 (1386)
T ss_pred HHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-----------cCc
Confidence 0011 12 222211 267999999999999999999999887542 112
Q ss_pred CCCCeeehHHHHHHHHHhhcccchhhHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhC-Cccchhhhhhcccc
Q 000374 710 KIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQSICAVLG-SEKFQDSASRQRGT 785 (1608)
Q Consensus 710 ~~~~~~F~L~kL~ev~l~N~~R~~~iW~~l~~hli~v~~~~---~~~lr~~Avd~L~~l~~~~L~-~~~~q~~~l~~l~~ 785 (1608)
.+.++.|+++.|+.|.+.|.+|+..+|..+.+|+..++..+ .+.+.+.|+-.+.+.+..-+. .....+++++++..
T Consensus 969 de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l~d~l~~sl~~ 1048 (1386)
T KOG0928|consen 969 DEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFLSDELLDSLRI 1048 (1386)
T ss_pred ccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHH
Confidence 35667999999999999999999999999999999886554 455788888877776433222 11222233333322
Q ss_pred ----------------------hhcccCcc--cCCChHHHHHHHhhhhhccchHHHHHHHHHHHHHHhcCCCCCChhhHH
Q 000374 786 ----------------------SDERCGEK--LHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH 841 (1608)
Q Consensus 786 ----------------------IL~~~g~~--l~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~Dfl~~Lp~~~~~ 841 (1608)
++..+..+ .+.||.++|..+..++.. +..--.+|..+-..+.|-.+ +++++|.
T Consensus 1049 ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~h--~~a~~~~~~~~l~~m~e~~h-l~~~~fe 1125 (1386)
T KOG0928|consen 1049 LLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTARH--PEADFLKFYRLLSKMSEASH-LTPDNFE 1125 (1386)
T ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcC--CchhHHHHHHHHHHhhcccc-CChHHHH
Confidence 22333333 468999999999988773 33334455555555556655 5668899
Q ss_pred HHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHhccCCCchhhhhhhhcccCCCccccCcchhhhhhcccccccCCCC
Q 000374 842 ECVDVTGAYSSQKT-ELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSI 920 (1608)
Q Consensus 842 ~~V~~L~~F~~q~~-d~NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~ 920 (1608)
.||+|...|+...- ...-++..++..-.-+..+.+ +..+.+.... ++. ....
T Consensus 1126 ~~v~~~~~fve~~~~~~~~~l~~lde~s~sg~~~~k----w~~~~~~~~~----------~~~-------------~~~~ 1178 (1386)
T KOG0928|consen 1126 LYVDCGSTFVEARVGQIMRSLSLLDEMSSSGEVLDK----WEIEAKNATE----------SGD-------------ESKK 1178 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhcccccchhH----HHHHHhhhhc----------ccc-------------cccc
Confidence 99999999997531 111111111111000000000 0000000000 000 0000
Q ss_pred cchhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccc
Q 000374 921 GMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 1000 (1608)
Q Consensus 921 ~~~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~ 1000 (1608)
.......+|+++++.+.++|.|.|.+|||+|++.|+|++.+-++.|.+..|..||..|+||+++++.+.....+..
T Consensus 1179 ~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~~---- 1254 (1386)
T KOG0928|consen 1179 SNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDASEK---- 1254 (1386)
T ss_pred cchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhcccccc----
Confidence 1112345999999999999999999999999999999877889999999999999999999999998654322110
Q ss_pred cccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCc-----hH
Q 000374 1001 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS-----KE 1075 (1608)
Q Consensus 1001 ~~~~~~~~~~~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~-----~e 1075 (1608)
++ .+.+|.+++.+.++++|.+|+..+.+.+.|..+|..+|+++++++..+. .-
T Consensus 1255 ------------------~~----~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~ 1312 (1386)
T KOG0928|consen 1255 ------------------GN----EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDK 1312 (1386)
T ss_pred ------------------cc----hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Confidence 11 4779999999999999999999999999999999999999999998653 56
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC-------hhHHHHHHHH
Q 000374 1076 VSLAAINCLQTTVLSHSTKGNLP-------VAYLNSVLDV 1108 (1608)
Q Consensus 1076 ls~aa~~sL~~lL~~~~~~~~~~-------~~~~~~~~~~ 1108 (1608)
+.+++++.+++++..|...+-+. ...|+..|.-
T Consensus 1313 l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~ 1352 (1386)
T KOG0928|consen 1313 LNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWER 1352 (1386)
T ss_pred HHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHH
Confidence 89999999999999998655432 2356655543
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=2.6e-28 Score=264.17 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHHhhh-----cCCCCCcccccchhhHhhHHHHHHHHHhCchhhc---cCHhhHHHHHHHHHHHHHHhh
Q 000374 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1608)
Q Consensus 224 ~~~~da~~lf~dLc~L~-----~~~~p~~l~~~~l~~~~~LELiesvL~n~~~~F~---~h~el~~llr~~lc~lLi~~l 295 (1608)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. .||+|.+++|+++|+.+++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 6667888888889999999999999999999999 666999999999999999988
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hccCCC-cHHHHHHHHHHHHHHhcChHHHHHH
Q 000374 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1608)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li~-~l~~~~-~~w~r~L~LEvl~~l~~dp~ll~~i 373 (1608)
.++ +.+.| .+++|++++++.+|+++||.|+|+|++.+++ +++++. |.|||+++||+|+++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 751 23455 4799999999999999999999999999998 778776 6899999999999999999999999
Q ss_pred HHhcCCCCCCccHH
Q 000374 374 FQNFDMNPKNTNVV 387 (1608)
Q Consensus 374 y~~YD~~~~~~nI~ 387 (1608)
|.||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999996
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.59 E-value=1e-13 Score=180.85 Aligned_cols=707 Identities=17% Similarity=0.158 Sum_probs=435.6
Q ss_pred hhHhhHHHHHHHHHhCchhhccCHhhHHHHHHHHH-HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHH
Q 000374 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITE 332 (1608)
Q Consensus 254 ~~~~~LELiesvL~n~~~~F~~h~el~~llr~~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E 332 (1608)
++..+|+++.++|..+. .|..+++.+.| .+.....+. -.|+|. ..+-+++..+..+....+.|
T Consensus 27 ~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~--------~~~v~~-v~~~i~~~~~~~~~~~f~~~ 90 (1024)
T COG5307 27 SKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSP--------LLPVFE-VGLEIIGLRLSNLPKLFKLE 90 (1024)
T ss_pred cccccccchHHHhccch-------HHHHHhcchhhhhhhhccccc--------chhhhh-hhHHHHHHHHhhhhhhhhhc
Confidence 77788888888777555 88899999999 443222221 246664 57889999999999999999
Q ss_pred HHHHHHHHHHhc-cCCCc-HHHHHHHHHHHHHHhcChHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhhcccc------
Q 000374 333 CEVFLSMLVKVT-FLDLP-LWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQF------ 403 (1608)
Q Consensus 333 ~EvfLs~Li~~l-~~~~~-~w~r~L~LEvl~~l~~dp~ll~~iy~~YD~~~~-~~nI~~~li~~L~~~~~~~~~------ 403 (1608)
.++|+...+..+ +...+ .-|+.+-|-..+++|..|+ ++.|.+|||... ..|+.+....-+.+.+.+.|-
T Consensus 91 ~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~ 168 (1024)
T COG5307 91 SSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLI 168 (1024)
T ss_pred cchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhh
Confidence 999988777654 54443 4567788889999999999 899999999977 677777666666544432110
Q ss_pred ----------------------c---------------------------------ccchhh------------------
Q 000374 404 ----------------------Q---------------------------------ETSEES------------------ 410 (1608)
Q Consensus 404 ----------------------~---------------------------------~~s~e~------------------ 410 (1608)
+ ..+.|.
T Consensus 169 ~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d 248 (1024)
T COG5307 169 IEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRD 248 (1024)
T ss_pred hhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccC
Confidence 0 000000
Q ss_pred ----------HH------------hhhccccCcc-ccccccccc------------------------------------
Q 000374 411 ----------LS------------AVAGMFSSKA-KGIEWILDN------------------------------------ 431 (1608)
Q Consensus 411 ----------l~------------~~~g~~~~k~-kGi~~~l~~------------------------------------ 431 (1608)
++ -.+..||.|+ +||..+.+.
T Consensus 249 ~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~ 328 (1024)
T COG5307 249 SSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDD 328 (1024)
T ss_pred hhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCch
Confidence 00 0233455555 365433211
Q ss_pred -------------CcCCCcc-----------cCCchhhHHHHHHHHHHHHH-------------------HHhhhc-ccc
Q 000374 432 -------------DASNAAV-----------LVASEAHSITLAIEGLLGVV-------------------FTVATL-TDE 467 (1608)
Q Consensus 432 -------------d~~~~~~-----------ll~~Ea~~I~~~~e~la~~i-------------------~tv~~l-td~ 467 (1608)
|..++++ .+|||+|+|+|++|+|+..+ |++.+| ||.
T Consensus 329 kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDl 408 (1024)
T COG5307 329 KNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDL 408 (1024)
T ss_pred hHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccc
Confidence 0012221 38999999999999999643 233333 343
Q ss_pred -------------------cccCCC-CCC-------------CC---CCCCCCCc-----------------cCCCc--h
Q 000374 468 -------------------AVDVGE-LES-------------PR---CDYDPLPK-----------------CMGET--A 492 (1608)
Q Consensus 468 -------------------~~~~g~-~~~-------------p~---~~~~~~~~-----------------~~~~~--~ 492 (1608)
|.|.|. ++. |- .++++.+. ..++. .
T Consensus 409 HNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~rd~~~ 488 (1024)
T COG5307 409 HNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFGRDNQR 488 (1024)
T ss_pred cChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhccccccc
Confidence 344442 210 00 01110000 00111 1
Q ss_pred hHHHHHHHHhhHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHHHHhccCCCC-cccccccc
Q 000374 493 VLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVL 571 (1608)
Q Consensus 493 ~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~sLck~t~~~~~~-~~~~~~~~ 571 (1608)
...+.+|+..|+-+++++...++...++-+....+.+++++..+|..|.+..|||+|+.++++++.+.... ++....
T Consensus 489 ~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~~-- 566 (1024)
T COG5307 489 VADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPYL-- 566 (1024)
T ss_pred chhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCccccccc--
Confidence 12347788888888888888888877777777888899999999999999999999999999999875322 111000
Q ss_pred cCCCCCC--ccccccccCCcCCChHHHHHHHHHHHHHHhhcC--cc-cccHHHHHHHHHHhHHhhcCCCCCccccccccc
Q 000374 572 QSPGSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASS 646 (1608)
Q Consensus 572 ~spg~~~--~~~~~~~~~~~~l~~Kni~~lraLl~La~~lG~--~L-~~sW~~IL~tlq~l~~~l~~p~~~~~~~~~~~p 646 (1608)
..+.... ..+..+....++-.-+++.+...++.+....|+ .+ ...|..+=..-..+........... ..|
T Consensus 567 ~~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~ 641 (1024)
T COG5307 567 FIPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSP 641 (1024)
T ss_pred cCccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----ccc
Confidence 0000000 000000001122344888899999999888777 33 4578777665555543322111000 001
Q ss_pred cccccccCccchhhHHHHhhHHHhhhccCCCH-HHHHHHHHHHHHhhHHhhhCCCCCCCCCCCCCCCCeeehHHHHHHHH
Q 000374 647 KLARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL 725 (1608)
Q Consensus 647 ~~~~~~~~~~~dl~il~si~~~LFesS~~L~~-esl~~~i~ALc~lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~ 725 (1608)
...+.-. ... +....++++...+.++. .++..++++++.... + .| .+++.+++.
T Consensus 642 ~~~~~~~--~~~---~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~------------~~---~~q~~v~~s 696 (1024)
T COG5307 642 SIVKKLG--SPE---LPKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----P------------SP---PLQKEVDIS 696 (1024)
T ss_pred ccccccc--Ccc---ccccCcccccccccccccchHHHHHHHHHhccC-----C------------CC---CcHHhhhHH
Confidence 1100000 001 11122567777788887 789999999987211 0 12 679999999
Q ss_pred Hhhcccc---hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHhhCCccchhhhhhcccc------------
Q 000374 726 VNNLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSI-----CAVLGSEKFQDSASRQRGT------------ 785 (1608)
Q Consensus 726 l~N~~R~---~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~l~-----~~~L~~~~~q~~~l~~l~~------------ 785 (1608)
..|+.++ ..+|..+....-.++.+.+..+..++.+..+++. ..++..+.|+..++.+++.
T Consensus 697 ~~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~ 776 (1024)
T COG5307 697 KKNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKE 776 (1024)
T ss_pred hhhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeee
Confidence 9999984 5689999999989999999999999999999873 3456667888877766553
Q ss_pred --------hhcccCcccCCChHHHHHHHhhhhhccchHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhcCCCc
Q 000374 786 --------SDERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTEL 857 (1608)
Q Consensus 786 --------IL~~~g~~l~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~Dfl~~Lp~~~~~~~V~~L~~F~~q~~d~ 857 (1608)
.+++....+.+| +.+|+++...... . -++..++.+.- .|. -..+.++|...+-+-........++
T Consensus 777 ~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~--~-~~~~~~s~~~~--~e~-v~s~~n~f~~~~~~~~~~~~~~~~~ 849 (1024)
T COG5307 777 LVIGCSDNLLTEAASSIASG-KTIFEISAYEDLS--S-TLRYILSSLSN--DEL-VLSQENLFIELLSSKNEGKQNDKNL 849 (1024)
T ss_pred eehhhHHHHHHHHHHhhhcc-ccceeeeeccccc--c-hhhhHHHHhcc--hhh-hhChhhHHHHHHhhhHHHHHhccch
Confidence 224444566777 8888877654321 1 13334443322 122 2233467777777777777777788
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCchhhhhhhhcccCCCccccCcchhhhhhcccccccCCCCcchhhhhhHHHHHHHHH
Q 000374 858 NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLK 937 (1608)
Q Consensus 858 NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL~~L~ 937 (1608)
-+.+.++.++.......... .... +. . ... ....+.|.+.+.++.
T Consensus 850 ~~~~~~~~~~~~~~~~~~~w-k~~~---~~--------------------~----------~~~-~~~~~~~~~~l~~~~ 894 (1024)
T COG5307 850 ELRLHSVDYLRFLLPNVENW-KNLS---SV--------------------L----------SAN-SNFSKDIFSYLEKYV 894 (1024)
T ss_pred hhhhccHHHHHHHhHHHHHH-HHHH---HH--------------------H----------Hhh-hhhhHHHHHHHHHHH
Confidence 88888887766554444321 0000 00 0 000 112578999998888
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcc
Q 000374 938 KLGAD-ERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIH 1016 (1608)
Q Consensus 938 ~L~~D-~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lih 1016 (1608)
++... .-.++ |..+..+++.+..+.|+.+.+.-++|++....-...+ +. .+.
T Consensus 895 ~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~---------~~--------~~~-- 947 (1024)
T COG5307 895 KIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD---------KT--------NLD-- 947 (1024)
T ss_pred HhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc---------cc--------ccc--
Confidence 77643 44555 8888899999999999999999999998866421111 00 011
Q ss_pred cccchhhhhHHH-HHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHh
Q 000374 1017 HSRNTAQKQWDE-TLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVL 1089 (1608)
Q Consensus 1017 hsr~~~~k~W~E-T~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~ 1089 (1608)
++...-.|.- |.+.++....-+|...++.+.. ..|.. .+...| .+....+...+++++++++-
T Consensus 948 --~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~~~--~l~~~c-~~~~~~~~~~~~~~~~~~~~ 1011 (1024)
T COG5307 948 --NDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAGKL--ILLHQC-LNNCDQLGLGAIETLEEILW 1011 (1024)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHhh-cCcHhhhhhhhHHHHhhhhH
Confidence 2233456874 5567888888888888886652 34433 334445 34446788888888887754
No 7
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=4.3e-07 Score=117.82 Aligned_cols=470 Identities=16% Similarity=0.134 Sum_probs=294.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCC----------C-------------------------
Q 000374 1052 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG----------N------------------------- 1096 (1608)
Q Consensus 1052 ~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~----------~------------------------- 1096 (1608)
.+|.++|..-|+.+..-...++.+|..||-++++.+........ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 35667899999999988889999999999999988875542110 0
Q ss_pred -------CC---------hhHHHHHHHHHHHhh--cCCC-CCCC----CCCcchhHHHHHHHHHHHHHHHhhCC--HHHH
Q 000374 1097 -------LP---------VAYLNSVLDVYEYAL--QKSP-NYSD----NAAGKVKQEILHGLGELYVQAQKMFD--DRMY 1151 (1608)
Q Consensus 1097 -------~~---------~~~~~~~~~~w~~i~--~~~~-~~~~----~~~~~~~q~~l~~f~~ly~~~~~~~~--~~~~ 1151 (1608)
++ ..+|..+|.-|.++. +..| -... ...+.+..-++.||+-+|++.+..++ ...+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 11 245666666666432 2211 1100 01223445567799999996555554 3555
Q ss_pred HHHHHHHHHHHHccCCCCCCCccccC-----CCCHHHHHHHHhccccCCC----c-cchhhHHHHHHHHHcccCCCCCCC
Q 000374 1152 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSPT----E-QLCSMWLVLLREILQYLPRSDSPL 1221 (1608)
Q Consensus 1152 ~~~l~il~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~~----~-~~~~~~~~~~~~l~~f~~~~~~~~ 1221 (1608)
+|+. +..|-+.|+. .+.++...+ +.++.|.+.+..+.-+..+ - .++.|+|....++|.|++..+.++
T Consensus 169 rQlV--~~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLV--LLVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHH--HHHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 5543 3344444432 222222222 3444444444443332221 1 356777888889998886655443
Q ss_pred CCCCCCCCCCCCCCcccccccc--cccCCCCCCCCCCcchhhhhhhccCCcccccchHH-HHHhHhHHHHHHhhh---cc
Q 000374 1222 QKKEDEEEPPSTSDNIHDVHVR--TKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1295 (1608)
Q Consensus 1222 ~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1295 (1608)
... -+...+.+ .++.-++.+.. .+++ ...++ |.+.+....|+++.. .+
T Consensus 246 ~~e-----------lLesilks~~s~~dq~qdf~~--a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLE-----------LLESILKSNASKSDQIQDFAP--AELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhh-----------hhhhhhhcchhhhHHHHHhhH--HHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 221 11111100 00000000000 0000 01222 666666666665544 46
Q ss_pred hhhhcchhHHHHHhhcc-------cccccCCCCCCcchHHHHHHHHHHHHHhhHhHhhhhcccccCChHHHHHhHHHHHH
Q 000374 1296 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1368 (1608)
Q Consensus 1296 ~~~~~~~~~~i~~~l~~-------~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1368 (1608)
.+.+.+.+-.+|+.+.. |-..+|.|+....|+++....+.+...++|....-.. --.+..+|.+..-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~------~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLAS------LLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHH------HhhhhhcCcccCc
Confidence 77677776777777766 9999999999999999999999999999987554331 1346788888888
Q ss_pred HhhhhhcccCCCCCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChhhhh----hhHHHhhhcccCCCCCCccc
Q 000374 1369 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1444 (1608)
Q Consensus 1369 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1444 (1608)
.+..|++... .++.+.++-.+. +.+.++..+.+.+-.+++|..+-++..++. .+...++.++.--|...+..
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 8888888863 334555556666 667788889999999999998888877665 66677776665444322111
Q ss_pred cccCccchhhhHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHH
Q 000374 1445 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1524 (1608)
Q Consensus 1445 ~~~~~~~r~r~s~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~Pr~r~~El~~ 1524 (1608)
-+.--..|+.+...|+..|-++..... ...++.-...+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111222357788888888877666321 23345666789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhh
Q 000374 1525 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCE 1573 (1608)
Q Consensus 1525 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~ 1573 (1608)
+- .+..++.-. ..+++..+...+...+.+++-.||.+..
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlts 565 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLTS 565 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHHh
Confidence 65 333333111 1123333335667789999999999984
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6.4e-06 Score=101.63 Aligned_cols=412 Identities=16% Similarity=0.212 Sum_probs=237.0
Q ss_pred HHHhhHHHhhh-ccCCCHHHHHHHHHHHHHhhHHhhhCCCCC------CCCCCCC--CCCCeeehHHHHHHHHH---hhc
Q 000374 662 LSSLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSSS------FGPTSSQ--KIGSISFSVERMISILV---NNL 729 (1608)
Q Consensus 662 l~si~~~LFes-S~~L~~esl~~~i~ALc~lS~~~l~~~~~~------~~~~~~~--~~~~~~F~L~kL~ev~l---~N~ 729 (1608)
+.+-.+|+|+. +..|..-++..|.-++.+.|...+..+-.. ..|+... ........|-|+.+-.+ ...
T Consensus 846 LiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhk 925 (1777)
T KOG1846|consen 846 LIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHK 925 (1777)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 44445899986 458889999999999999987754332100 0111110 01111234445555221 222
Q ss_pred cc----chhhHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhh------CCccchhhhhhcccc-------------
Q 000374 730 HR----VEPLWDQVVGHFLEL-ADNSNQHLRNIALDALDQSICAVL------GSEKFQDSASRQRGT------------- 785 (1608)
Q Consensus 730 ~R----~~~iW~~l~~hli~v-~~~~~~~lr~~Avd~L~~l~~~~L------~~~~~q~~~l~~l~~------------- 785 (1608)
.| ..-+|+.+..||+++ +|+...++...|+-.+..+..+.| .++.|..-+.+||+.
T Consensus 926 aRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkd 1005 (1777)
T KOG1846|consen 926 ARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKD 1005 (1777)
T ss_pred ccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHH
Confidence 24 367899999999999 677776777777666655544333 234555555566554
Q ss_pred --------hhcccCcccCCChHHHHHHHhhhhhccchH----HHH---------HHHHHHHHHHhcCCCCCC--hhhHHH
Q 000374 786 --------SDERCGEKLHYSWPSILELLRSVADASEKD----LIT---------LGFQSLRFIMNDGLSSIP--TDCIHE 842 (1608)
Q Consensus 786 --------IL~~~g~~l~sgW~~If~IL~~v~~~~~~~----lv~---------~aF~~LqlI~~Dfl~~Lp--~~~~~~ 842 (1608)
+.+.|++.+.+||+.+|+-|.+|...+... ++. -+|+++.-..+ ..++| .+....
T Consensus 1006 QflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLn--iDnipVfanaale 1083 (1777)
T KOG1846|consen 1006 QFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLN--IDNIPVFANAALE 1083 (1777)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhc--cCchHhHHHHHHH
Confidence 458888999999999999999997522111 111 35776665443 22344 256889
Q ss_pred HHHHHHHHHhcCC-----------------CcchhHHHHHHHHHHHHHHHhcc--CCCchhhhhhhhcccCCC---cccc
Q 000374 843 CVDVTGAYSSQKT-----------------ELNISLTAVGLLWTTTDFIAKGL--VHGISEEKEAANQDLCSV---PKQM 900 (1608)
Q Consensus 843 ~V~~L~~F~~q~~-----------------d~NISLtAi~llw~isD~L~~~~--~~~~~~~k~~~~~~~~s~---~~~~ 900 (1608)
||-|+.+|.+.-. ..+.+|.|+.++.+|+..+.+-. .+++.-- ...-.+..+. ...+
T Consensus 1084 cimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifh-lghladLprkcldqsam 1162 (1777)
T KOG1846|consen 1084 CIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFH-LGHLADLPRKCLDQSAM 1162 (1777)
T ss_pred HHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhh-hhhhhcchHHHHhhhhc
Confidence 9999999998654 23467899999999998776432 1111000 0000000000 0000
Q ss_pred CcchhhhhhcccccccCCCCcchhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhH
Q 000374 901 DGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYV 979 (1608)
Q Consensus 901 ~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g-~~ls~~~W~~~f~~VL 979 (1608)
+..-.|.--..++-.. ........-++|..++..+.....+.-|.-...-+..+|+.|..-. .-|.+.+=-.|+..+|
T Consensus 1163 deDgIEsphgpfpvle-dfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsali 1241 (1777)
T KOG1846|consen 1163 DEDGIESPHGPFPVLE-DFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALI 1241 (1777)
T ss_pred ccCCccCCCCCccccc-cccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHH
Confidence 0000010000000000 0001112347999999999877777777788888999999887422 2223333347888899
Q ss_pred HHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHHH---HHHHHHHHHHHHHHhhhhhhccccchHH
Q 000374 980 FPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDE---TLVLVLGGIARLLRSFFPFLANLSNFWT 1056 (1608)
Q Consensus 980 FPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lihhsr~~~~k~W~E---T~vlal~gl~~lf~~~~~~l~~l~~F~~ 1056 (1608)
+|.+....... +.+..-|+- -...++..-+.+...|.+.... +++..
T Consensus 1242 LPvmqkWiRRl-----------------------------dkdesywdmakaifKhaIGaccelVidhielekh-Sswdd 1291 (1777)
T KOG1846|consen 1242 LPVMQKWIRRL-----------------------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKH-SSWDD 1291 (1777)
T ss_pred HHHHHHHHHHh-----------------------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-chHHH
Confidence 99999886321 111234652 3356777777887777765543 22221
Q ss_pred --------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 000374 1057 --------GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVY 1109 (1608)
Q Consensus 1057 --------~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~~~~~~~~~~~~~~w 1109 (1608)
+-.+..+|...|....-..+..++.+|.+-+|...++++ +++.|..+..+.
T Consensus 1292 RlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemWniaccaL 1350 (1777)
T KOG1846|consen 1292 RLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMWNIACCAL 1350 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHHHHHHHHH
Confidence 223333444445555556677777888887776655554 578887655433
No 9
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=98.64 E-value=7.1e-09 Score=99.04 Aligned_cols=62 Identities=24% Similarity=0.389 Sum_probs=56.0
Q ss_pred HHHhhCCccchhhhhhcccch--------------------hcccCcccCCChHHHHHHHhhhhhccchHHHHHHHHHHH
Q 000374 766 ICAVLGSEKFQDSASRQRGTS--------------------DERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLR 825 (1608)
Q Consensus 766 ~~~~L~~~~~q~~~l~~l~~I--------------------L~~~g~~l~sgW~~If~IL~~v~~~~~~~lv~~aF~~Lq 825 (1608)
.+.|+.+++||+++++||+.| ++++|+++++||++||++|+.++.++++++|+.||++++
T Consensus 5 ~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 5 EKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456889999999999998864 377899999999999999999999889999999999999
Q ss_pred HH
Q 000374 826 FI 827 (1608)
Q Consensus 826 lI 827 (1608)
+|
T Consensus 85 ~I 86 (86)
T PF09324_consen 85 LI 86 (86)
T ss_pred hC
Confidence 76
No 10
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.62 E-value=0.00092 Score=94.05 Aligned_cols=533 Identities=14% Similarity=0.147 Sum_probs=269.6
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH-HhHHHHHHHhhhhhccCCccccccc
Q 000374 923 VDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLW-NYVFPMLDCASHMAATSSKDEWQGK 1001 (1608)
Q Consensus 923 ~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~-~VLFPLL~~l~~~~~~~s~~e~~~~ 1001 (1608)
..|..+|-.+-.-+..+++++-.+|+--|+..|-++-..+-. ..+.++.=|. +.|-|+..-+.+.
T Consensus 1129 l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~im~~s------------ 1194 (1780)
T PLN03076 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKS------------ 1194 (1780)
T ss_pred eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHHHHHhc------------
Confidence 358899987777788887887799999999987665443321 1112222233 3455655444321
Q ss_pred ccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 000374 1002 ELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAI 1081 (1608)
Q Consensus 1002 ~~~~~~~~~~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~ 1081 (1608)
.+ .|.+-++++.+.++...+.+.+.. .|..++..+...+..+.+.+...|+
T Consensus 1195 -----------------~~------~eVrE~ILeCv~qmI~s~~~nIkS------GWktIF~VLs~aa~d~~e~iV~lAF 1245 (1780)
T PLN03076 1195 -----------------NA------VEIRELIIRCVSQMVLSRVNNVKS------GWKSMFMVFTTAAYDDHKNIVLLAF 1245 (1780)
T ss_pred -----------------Cc------hHHHHHHHHHHHHHHHHHHhhhhc------CcHHHHHHHHHHHhCccHHHHHHHH
Confidence 11 145557888888888888876654 7999999999888888888999999
Q ss_pred HHHHHHHhhhcC-CCCCChhHHHHHHHHHHHhhcCCCCCCCCCCcchhH--HHHH-HHHHHHHHH-----H---------
Q 000374 1082 NCLQTTVLSHST-KGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQ--EILH-GLGELYVQA-----Q--------- 1143 (1608)
Q Consensus 1082 ~sL~~lL~~~~~-~~~~~~~~~~~~~~~w~~i~~~~~~~~~~~~~~~~q--~~l~-~f~~ly~~~-----~--------- 1143 (1608)
+.++.++..... ....+.+....+++........... .+.+.+ +++. +-..+.+.. .
T Consensus 1246 etl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-----~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~ 1320 (1780)
T PLN03076 1246 EIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-----KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPS 1320 (1780)
T ss_pred HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-----ccccHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 999887654221 0001122222222222211110000 000000 0000 001110000 0
Q ss_pred ------------hh-CCH-HHHHHHHHHHHHHHHccCCCCCCCccccCCCCHHHHHHHHhc-cccCC-Cccc-hhhHHHH
Q 000374 1144 ------------KM-FDD-RMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEIL-PLLSP-TEQL-CSMWLVL 1206 (1608)
Q Consensus 1144 ------------~~-~~~-~~~~~~l~il~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l-~~i~~-~~~~-~~~~~~~ 1206 (1608)
.. .+. +...=++-+|..+..... | .=..+++..++.| +.+.. .... +..|-.+
T Consensus 1321 ~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~---D-------~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~i 1390 (1780)
T PLN03076 1321 SPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF---D-------PRPEIRKSALQVLFDTLRNHGHLFSLPLWERV 1390 (1780)
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHhc---C-------CcHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 00 001 111223444444433211 1 1123444444443 22211 1112 3466677
Q ss_pred HHHHH----cccCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHh
Q 000374 1207 LREIL----QYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEK 1282 (1608)
Q Consensus 1207 ~~~l~----~f~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1282 (1608)
+.+++ +.+.....+...++..++ ++.......+.-.|. .. ..-.
T Consensus 1391 f~~VLFPIFd~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~Wl----------~e---T~~~ 1438 (1780)
T PLN03076 1391 FESVLFPIFDYVRHAIDPSGGDEPEGQ-------------------GVDGDQGELDQDAWL----------YE---TCTL 1438 (1780)
T ss_pred HHHHHHHHHHHHHHhhccccccccccc-------------------cccccccchhhhhHH----------HH---HHHH
Confidence 77543 111110001110000000 000000000111121 11 2334
Q ss_pred HhHHHHHHhhhcchhhhcchhHHHHHhhcccccccCCCCCCcchHHHHHHHHHHHHHhhHhHhhhhcccccCChHHHHHh
Q 000374 1283 LIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRV 1362 (1608)
Q Consensus 1283 ~~~~~~~l~~~~p~~~~~~~~~~i~~~l~~~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 1362 (1608)
++.-+++||.++=....+ .+++++.-|.-|+..- ..++=|..++|+.+.+....+. .+ +.-
T Consensus 1439 AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~----------F~----~~~ 1499 (1780)
T PLN03076 1439 ALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHL----------FS----DEK 1499 (1780)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhcc----------CC----HHH
Confidence 455567777665333444 5588888888887754 7788888888888887765433 22 245
Q ss_pred HHHHHHHhhhhhcccC-CC-CCCC-CCCChhhccccch--------------------hh------chH-HH-----HHh
Q 000374 1363 WKEVADVYEIFLVGYC-GR-ALPS-NSLSAVALSGADE--------------------SL------EMS-IL-----DIL 1407 (1608)
Q Consensus 1363 W~~v~~~~~~~l~~~~-~~-~~~~-~~~~~~~~~~~dE--------------------~~------d~~-~~-----~~l 1407 (1608)
|.+|++.+....-.-- +. ..|. ...+.+...+.+. .+ -|. ++ +.+
T Consensus 1500 W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~ 1579 (1780)
T PLN03076 1500 WLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAV 1579 (1780)
T ss_pred HHHHHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999888654421 00 0000 0000000000000 00 010 11 111
Q ss_pred hhhccCCCCCCChhhhhhhHHHhhhcc---c-------------CCCCCCccccccCccchhhhHHH-HHHHHhhhhcCC
Q 000374 1408 GDKILKSPIDAPFDVLQRLISTIDRCA---S-------------RTCSLPVETVELMPAHCSKFSLA-CLHKLFSLSSSD 1470 (1608)
Q Consensus 1408 ~~~i~~~~~~~p~~~~~~l~~l~~~~~---~-------------r~~~~~~~t~~~~~~~r~r~s~~-c~d~Lf~l~s~~ 1470 (1608)
.+..=-+...+|..-+.+|.++|..-- . |-|... +-.+|.-.+-|.=||. |+..||.+-...
T Consensus 1580 ~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~-~~~~PnLLkqE~~s~~~~l~il~~~~~d~ 1658 (1780)
T PLN03076 1580 MEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMT-QMQDPPLLRLENESYQICLTFLQNLILDK 1658 (1780)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcc-cCCCCchhhHhHHHHHHHHHHHHHHhcCC
Confidence 111001245677777777776664311 0 222110 0112444455667777 789999988743
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------ccCCCCCChhHHHH-------HHHHHHHHHh
Q 000374 1471 NEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDEN------------DLGERNFPAARLEE-------IIFILQELAR 1531 (1608)
Q Consensus 1471 ~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~------------l~G~~P~Pr~r~~E-------l~~vL~~l~~ 1531 (1608)
+.. ..+.. +--.|+.=|+.+|+.|+.=.. -+=.+|+-..+++| +..||+++.+
T Consensus 1659 ~~~----~~~~~----~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~ 1730 (1780)
T PLN03076 1659 PPL----AKEAE----VESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCG 1730 (1780)
T ss_pred Ccc----chHHH----HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhc
Confidence 211 12222 445688889999999964211 01134555667777 5667777754
Q ss_pred cccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheec--chhHHHHHHHHHHH-HHhhh
Q 000374 1532 LKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS--REARVRELVQVLLR-LITKE 1596 (1608)
Q Consensus 1532 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~--~~~~v~~ll~~~l~-~vg~e 1596 (1608)
|- +.+.++|+-.+||++|+++.+ ...+|+.+|+.+|. .||-.
T Consensus 1731 l~-----------------------~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~ 1775 (1780)
T PLN03076 1731 LG-----------------------DSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPV 1775 (1780)
T ss_pred CC-----------------------HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhh
Confidence 32 244799999999999999965 45899999999999 78863
No 11
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=10 Score=53.17 Aligned_cols=154 Identities=12% Similarity=0.224 Sum_probs=92.2
Q ss_pred CcccccHHHHHHHHHHhHHhhcCCCCCccccccccccccccccCccchhhHHHHhhHHHhhhccCCCHHHHHHHHHHHHH
Q 000374 611 NVLGPSWVLVLETLAALDRAIHSPHATTQEVSTASSKLARESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQ 690 (1608)
Q Consensus 611 ~~L~~sW~~IL~tlq~l~~~l~~p~~~~~~~~~~~p~~~~~~~~~~~dl~il~si~~~LFesS~~L~~esl~~~i~ALc~ 690 (1608)
+..+.||+.||.++.....--.. .+ ...++..++.+....|++...-.-.+|.+-+++|.+
T Consensus 1063 ~nikSGWk~if~i~~~aA~~~~~-------------~i------v~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKIFTTAASDSSK-------------NI------VELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred hhhhhhhhHHHHHHHHhhccchh-------------hH------HHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 66788999999998776431100 00 012445555666788887766666899999999887
Q ss_pred hhHHhhhCCCCCCCCCCCCCCCCeeehHHHHHHH---HHhh------cccchhhHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000374 691 LSHQCMIGTSSSFGPTSSQKIGSISFSVERMISI---LVNN------LHRVEPLWDQVVGHFLELADNSNQHLRNIALDA 761 (1608)
Q Consensus 691 lS~~~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev---~l~N------~~R~~~iW~~l~~hli~v~~~~~~~lr~~Avd~ 761 (1608)
-..+.....- +-+.-.-.-++..++.+- ...+ .+-|...|-++.--+..+.+.....+|.+|..+
T Consensus 1124 F~~~~~~~~~------s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~v 1197 (1514)
T KOG0929|consen 1124 FTKNLGFPDD------SLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEV 1197 (1514)
T ss_pred HHHhcCCCcc------chHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHH
Confidence 7654211100 000000001222233222 1111 112788899999999988886677899999999
Q ss_pred HHHHHHHhhCCccchhhhhhcccchhcccCccc-CCChHHHHHHHhhhhh
Q 000374 762 LDQSICAVLGSEKFQDSASRQRGTSDERCGEKL-HYSWPSILELLRSVAD 810 (1608)
Q Consensus 762 L~~l~~~~L~~~~~q~~~l~~l~~IL~~~g~~l-~sgW~~If~IL~~v~~ 810 (1608)
+..+.. .+|+.+ ..-|..||+++-.+++
T Consensus 1198 lF~il~---------------------~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1198 LFDILK---------------------EHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred HHHHHH---------------------hhhhhccHHHHHHHHHheeeccc
Confidence 987644 244444 3579999997766654
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=84.56 E-value=1.7e+02 Score=39.69 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=65.6
Q ss_pred hcChhHHHHHHHHHHHHhcCCCCCcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCC--C--CcchHHHHHHHH
Q 000374 20 RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--V--APSALKEIFSML 95 (1608)
Q Consensus 20 RK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~--i--~~~~l~~Il~~l 95 (1608)
-++|-||.+|=-++.+|-.. ..++.....++.=+.-....+++-++..|+..+..+-..+- + ....+..+++.|
T Consensus 151 D~~pYVRKtAalai~Kly~~--~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHD--DMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL 228 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhh--CcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Confidence 45666666665555555322 11222222222222222356677777777777777754431 0 011222333333
Q ss_pred HhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhhhhcccccChHHHHHHHHHHH-------HHHHHHHHhh
Q 000374 96 KNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATF-------RQAVALIFDH 168 (1608)
Q Consensus 96 ~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sks~~~v~~TA~ATL-------~Qlv~~VFdr 168 (1608)
-++ +|=-|++||++|.. |. +-..+....++.......++ .|+.||-.++.+-+ .+++..++.|
T Consensus 229 ~e~----~EW~Qi~IL~lL~~----y~-P~~~~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 229 PEC----NEWGQLYILELLAA----QR-PSDKESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred hcC----ChHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 333 45678888888843 21 11122233444444433232 34437777766533 2444555555
Q ss_pred hh
Q 000374 169 VV 170 (1608)
Q Consensus 169 v~ 170 (1608)
+.
T Consensus 299 l~ 300 (746)
T PTZ00429 299 VN 300 (746)
T ss_pred HH
Confidence 53
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.65 E-value=54 Score=42.27 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhcCCCCCcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCC
Q 000374 5 AVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVA 84 (1608)
Q Consensus 5 ~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~ 84 (1608)
+.+..++..+.. -++|.||.+|=-++-++=.. .++..+.. ++.++.-....+++.+...|+.++.-+ +.-+
T Consensus 113 ~~l~~~v~~ll~---~~~~~VRk~A~~~l~~i~~~--~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i---~~~~ 183 (526)
T PF01602_consen 113 EPLIPDVIKLLS---DPSPYVRKKAALALLKIYRK--DPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI---KCND 183 (526)
T ss_dssp HHHHHHHHHHHH---SSSHHHHHHHHHHHHHHHHH--CHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH---HCTH
T ss_pred hHHHHHHHHHhc---CCchHHHHHHHHHHHHHhcc--CHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH---ccCc
Confidence 344444444443 46788888766555554222 12233333 677777788888999999999999888 2222
Q ss_pred c---chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHH--HHHHHHhhhhcc
Q 000374 85 P---SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNM--AQALGICLRLLE 142 (1608)
Q Consensus 85 ~---~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L--~~~L~~C~~L~~ 142 (1608)
+ ..++.+++.|.......++-+|.++++++..+.... .+.- ..++..+..+..
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-----PEDADKNRIIEPLLNLLQ 241 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-----HHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-----hhhhhHHHHHHHHHHHhh
Confidence 2 456667777766544556678999999888654432 1122 455666666543
No 14
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.04 E-value=7.1 Score=29.76 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000374 933 FSLLKKLGADERPEVRNSAIRTLFQTLG 960 (1608)
Q Consensus 933 L~~L~~L~~D~R~EVRn~AiqTLfril~ 960 (1608)
+..+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4456677899999999999999988764
No 15
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=71.17 E-value=1.2e+02 Score=38.49 Aligned_cols=270 Identities=11% Similarity=0.120 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhCCc-----cchhhhhhcccchhcccCcccCCChHHHHHHHhhh
Q 000374 735 LWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSE-----KFQDSASRQRGTSDERCGEKLHYSWPSILELLRSV 808 (1608)
Q Consensus 735 iW~~l~~hli~v~~~~-~~~lr~~Avd~L~~l~~~~L~~~-----~~q~~~l~~l~~IL~~~g~~l~sgW~~If~IL~~v 808 (1608)
+=+.++.-+..++.+| |+.+--|..+++.-+++...... .|-+....+|..||++. ...=.+-||.|+...
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d---V~EF~PYvfQIla~L 144 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD---VQEFIPYVFQILAQL 144 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3344555555667777 89999998888877654321111 34455667777788764 345667778877654
Q ss_pred hhccchHHHHHHHH-HHHHHHhcCCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHhccCCCchhhhh
Q 000374 809 ADASEKDLITLGFQ-SLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKE 887 (1608)
Q Consensus 809 ~~~~~~~lv~~aF~-~LqlI~~Dfl~~Lp~~~~~~~V~~L~~F~~q~~d~NISLtAi~llw~isD~L~~~~~~~~~~~k~ 887 (1608)
-......-+..+|. -+..+.+..+=.- ..++..+|..|.+|.+.....-.+-.-+.-++++-..|-.. +..+ .
T Consensus 145 le~~~~~~~p~~y~~L~~~Ll~p~lWe~-~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s---k~~D--~ 218 (435)
T PF03378_consen 145 LELRPSSPLPDAYKQLFPPLLSPALWER-RGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS---KAND--H 218 (435)
T ss_dssp HHHSS--S--TTTGGGHHHHTSGGGGGS-TTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT----TTCH--H
T ss_pred HHcCCCCCCcHHHHHHHHHHcCcchhcc-CCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC---CCcc--h
Confidence 33211011111221 1222222222111 24788899999998886644322223344456665555532 1110 0
Q ss_pred hhhcccCCCccccCcchhhhhhcccccccCCCCcchhhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc----
Q 000374 888 AANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG---- 963 (1608)
Q Consensus 888 ~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g---- 963 (1608)
.+.. .-+.....++. .... .-...+|..+|.+|.+- .-...+++=+..+.-....||
T Consensus 219 ~gF~------------LL~~iv~~~p~---~~l~-~yl~~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 219 YGFD------------LLESIVENLPP---EALE-PYLKQIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHH------------HHHHHHHHS-H---HHHG-GGHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHH------------HHHHHHHHCCH---HHHH-HHHHHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 0000 00000000000 0000 11346788888888652 223333333333333333444
Q ss_pred ----CCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHH
Q 000374 964 ----QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIAR 1039 (1608)
Q Consensus 964 ----~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lihhsr~~~~k~W~ET~vlal~gl~~ 1039 (1608)
+...+..|..++.+++.|-++++... . | +.++.=|+++
T Consensus 280 i~~id~IQ~glF~~il~~v~lp~~~k~~~~-------------------------------~------e-rKi~~vGltk 321 (435)
T PF03378_consen 280 IQTIDSIQPGLFGMILEKVWLPDLQKVSGP-------------------------------I------E-RKICAVGLTK 321 (435)
T ss_dssp HHHHHTTSTTHHHHHHHHTHHHHGGG--SH-------------------------------H------H-HHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHhcCchhhcCCc-------------------------------c------h-hhHHHHHHHH
Confidence 34456678888888888866655210 1 2 3355567777
Q ss_pred HHHhhhhhhccccchHHHHHHHHHHHHHHHcCCc
Q 000374 1040 LLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 1073 (1608)
Q Consensus 1040 lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~ 1073 (1608)
++..- +.+.+ ...+.|..+++-+-+++....
T Consensus 322 LL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 322 LLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp HHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred HHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 77432 22211 145789999998887776543
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=69.89 E-value=3.2e+02 Score=35.17 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHH
Q 000374 51 ILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNM 130 (1608)
Q Consensus 51 ~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L 130 (1608)
....+.--+.++|+.+.+.||.+|-++. .++.++.++..+..+.......|.=|-+-++..++..+...+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 5556666777889999999999998877 445556666666655433344788888888888887643322222
Q ss_pred HHHHHHhhhhcccccChHHHHHHHHHHHHHH
Q 000374 131 AQALGICLRLLENNRSSDSVRNTAAATFRQA 161 (1608)
Q Consensus 131 ~~~L~~C~~L~~~sks~~~v~~TA~ATL~Ql 161 (1608)
.+..+.++. ..+++ .|...|-..+.++
T Consensus 153 --~~~~l~~lL-~d~~~-~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 --LIPKLKQLL-SDKDP-SVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHT-THSSH-HHHHHHHHHHHHH
T ss_pred --HHHHHhhhc-cCCcc-hhHHHHHHHHHHH
Confidence 355555553 45566 7777787777777
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=65.76 E-value=4.8e+02 Score=35.47 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=69.3
Q ss_pred hHhhHHHHHHHHHhCchhhccCHhhHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000374 255 RTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECE 334 (1608)
Q Consensus 255 ~~~~LELiesvL~n~~~~F~~h~el~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~E 334 (1608)
-...|+-+..++.-.... .+++...+-.++-+.++.++++ .|...-.++|-+..++..+-..+..+.+
T Consensus 270 ~AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~ss---------~~eiqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLSRR---------DAETQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhhCC---------CccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 355566666666443322 3555555545565444466543 3333224788878888888777777666
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHhcChH---HHHHHHHhcCCCCCCccHHHHHHHHHHHHhh
Q 000374 335 VFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR---TLRLLFQNFDMNPKNTNVVEGMVKALARVVS 399 (1608)
Q Consensus 335 vfLs~Li~~l~~~~~~w~r~L~LEvl~~l~~dp~---ll~~iy~~YD~~~~~~nI~~~li~~L~~~~~ 399 (1608)
+|+-.. +-|..-|...||++-.++.+-+ ++.++.. |=.+. ...+-+..|.++++++.
T Consensus 338 ~Ff~~~------~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~-D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 338 SFYVRY------SDPPFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGV-DMVFVVEVVRAIASLAI 397 (746)
T ss_pred hhhccc------CCcHHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcC-CHHHHHHHHHHHHHHHH
Confidence 665332 2355679999999999976642 3333332 21111 12355555555555543
No 18
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.24 E-value=80 Score=37.79 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcc
Q 000374 943 ERPEVRNSAIRTLFQTLGSHG 963 (1608)
Q Consensus 943 ~R~EVRn~AiqTLfril~~~g 963 (1608)
...+||.-|++.+|+++..||
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 389999999999999999999
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=64.67 E-value=1.1e+02 Score=34.61 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=66.2
Q ss_pred hhHhhHHHHHHHHHhCchhhccCHhhHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHH
Q 000374 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1608)
Q Consensus 254 ~~~~~LELiesvL~n~~~~F~~h~el~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~ 333 (1608)
.|.=+|+-|..++..+ .--...+.+...+| .+...+.+.+++. +.......+.++..+...+...+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 6777888899988888 22234578888888 4444555555541 333334678888999999999999999
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHhcChH
Q 000374 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1608)
Q Consensus 334 EvfLs~Li~~l~~~~~~w~r~L~LEvl~~l~~dp~ 368 (1608)
+.++..|++.+...+ .+-|.-+.+.+..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC
Confidence 999999999886543 4677777777777755443
No 20
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=60.02 E-value=2.4e+02 Score=32.67 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHhhcCC-----CHHHHHHHHH--HHHHHHHhccCCC--CHHHHHHHHHHhHH--HHHHHhhhhh
Q 000374 924 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAIR--TLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 990 (1608)
Q Consensus 924 ~~~~lW~~LL~~L~~L~~D~-----R~EVRn~Aiq--TLfril~~~g~~l--s~~~W~~~f~~VLF--PLL~~l~~~~ 990 (1608)
.|..||..|+..+.=+++.. .+.|-.-+.+ .+|..+.+||+.| +++.-+..|.+++- +.|+++....
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 59999999988887776432 3445544444 3577788999887 77799999999986 8888887553
No 21
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.94 E-value=8.3 Score=43.96 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.7
Q ss_pred cCCchhhHHHHHHHHHHHHHH
Q 000374 439 LVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 439 ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
++|||+|+|+|+||.||..++
T Consensus 152 RLPGEaQKIdRmmEaFA~rYc 172 (395)
T KOG0930|consen 152 RLPGEAQKIDRMMEAFAQRYC 172 (395)
T ss_pred cCCchHHHHHHHHHHHHHHHh
Confidence 499999999999999998653
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=49.40 E-value=4.3e+02 Score=29.80 Aligned_cols=110 Identities=17% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccc
Q 000374 932 VFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAV 1011 (1608)
Q Consensus 932 LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~ 1011 (1608)
++..|.+.+.|.-.-||..|.++|-.++...+ +..+++++++......
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~---------------------- 142 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKS---------------------- 142 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhC----------------------
Confidence 55677788899999999999999999887543 1124556666654210
Q ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHHhhh---hhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 000374 1012 HMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFF---PFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTV 1088 (1608)
Q Consensus 1012 ~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~---~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL 1088 (1608)
|.+ ..+..++..+..++..+- ..+.. ...+..+...+.+++...+.++-.+|.++|..+-
T Consensus 143 ------------Kn~-~vR~~~~~~l~~~l~~~~~~~~~l~~----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 143 ------------KNP-QVREECAEWLAIILEKWGSDSSVLQK----SAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp ------------S-H-HHHHHHHHHHHHHHTT-----GGG------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred ------------CCH-HHHHHHHHHHHHHHHHccchHhhhcc----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 111 334455555565555555 22221 1124678888889999999999999999998875
Q ss_pred hh
Q 000374 1089 LS 1090 (1608)
Q Consensus 1089 ~~ 1090 (1608)
..
T Consensus 206 ~~ 207 (228)
T PF12348_consen 206 SH 207 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=48.68 E-value=1.5e+02 Score=35.45 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhcCCCCC---------cccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCC
Q 000374 14 LSAEARRRYPAVKDGAEHAILKLRSLSSPS---------ELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVA 84 (1608)
Q Consensus 14 L~~EskRK~~~lk~A~e~al~~Lk~~~~~~---------~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~ 84 (1608)
+..-.++.+++||..|=+++-.+=...... +......+++-|.-...+.++++-.+|..++-||+-+|.+.
T Consensus 69 ~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 69 FLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 333444457777777777655443332211 11334678888888888889999999999999999999998
Q ss_pred c
Q 000374 85 P 85 (1608)
Q Consensus 85 ~ 85 (1608)
+
T Consensus 149 ~ 149 (298)
T PF12719_consen 149 D 149 (298)
T ss_pred c
Confidence 7
No 24
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.29 E-value=2.4e+02 Score=37.00 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCccchhhcccccch
Q 000374 942 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1021 (1608)
Q Consensus 942 D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~~~~lihhsr~~ 1021 (1608)
-+-.+||.+|...||..+---|..+..+.-+.++.+-..-| .++.+- +
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l-~~LL~d------------~------------------- 232 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEEL-YSLLED------------P------------------- 232 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHHhcC------------C-------------------
Confidence 35689999999999999988888888888888887654444 334321 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHhhh
Q 000374 1022 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 1091 (1608)
Q Consensus 1022 ~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~-~~~~~els~aa~~sL~~lL~~~ 1091 (1608)
.-.-+-.|..|++|+|..|+..+-. ..-..+|.++..-+ +....+|-.++++++..++-..
T Consensus 233 ----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 233 ----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 1134557899999999999987753 34566777666544 3445689999999998877543
No 25
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=45.75 E-value=2.2e+02 Score=30.64 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=38.3
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHHhh
Q 000374 937 KKLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCAS 987 (1608)
Q Consensus 937 ~~L~~D~R~EVRn~AiqTLfril~~~g--~~ls~~~W~~~f~~VLFPLL~~l~ 987 (1608)
...-...+.-=|+.|++.|-+++.... ..++...|+.+|. .||-.++.-.
T Consensus 10 ~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek 61 (155)
T PF11640_consen 10 LRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEK 61 (155)
T ss_pred HHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHH
Confidence 344455677789999999999998665 8899999998885 6666666544
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=39.58 E-value=1.7e+02 Score=28.97 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=41.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhccCCCchhhhhhhhcccCCCccccCcchhhhhhcccccccCCCCcchhhhhhHHHHH
Q 000374 854 KTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVF 933 (1608)
Q Consensus 854 ~~d~NISLtAi~llw~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~lW~~LL 933 (1608)
+.|..+-.-|...+.+++...+... -...--+|
T Consensus 38 D~d~rVRy~AcEaL~ni~k~~~~~~-----------------------------------------------l~~f~~IF 70 (97)
T PF12755_consen 38 DQDSRVRYYACEALYNISKVARGEI-----------------------------------------------LPYFNEIF 70 (97)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------HHHHHHHH
Confidence 4577888889999998886655320 01223366
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000374 934 SLLKKLGADERPEVRNSAIRTLFQTL 959 (1608)
Q Consensus 934 ~~L~~L~~D~R~EVRn~AiqTLfril 959 (1608)
..|.+++.|+.+.||++| +.|=|.|
T Consensus 71 ~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 71 DALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 888999999999999999 5555544
No 27
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.94 E-value=5.1e+02 Score=30.71 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=84.4
Q ss_pred hhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCccccccccc
Q 000374 924 DRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKEL 1003 (1608)
Q Consensus 924 ~~~~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~ 1003 (1608)
..+..|-.++-.+-.+.-|..+++|-.+++.|..++..-.. ..|..+-+.-++.++.+.....-.
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~----~~~~~L~~tGl~~v~~~al~~~L~----------- 176 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA----AEWDILRRTGLFSVFEDALFPCLY----------- 176 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh----hhhHHHHHcChHHHHHHHHHHHhh-----------
Confidence 35577777788888899999999999999999999984322 125555544455544444321000
Q ss_pred ccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhh--hccccchHHHHHH-HHHHHHHHHcCCchHHHHHH
Q 000374 1004 GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPF--LANLSNFWTGWES-LLHFVKNSILNGSKEVSLAA 1080 (1608)
Q Consensus 1004 ~~~~~~~~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~--l~~l~~F~~~W~~-LL~~~~~~~~~~~~els~aa 1080 (1608)
+-..-+...+..+-...+...+.+++..-+.. -.....+.+...+ +|..+..........+..+.
T Consensus 177 ------------~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 177 ------------YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred ------------cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 00000111222233334444444444432210 0111122233322 44433332222347888888
Q ss_pred HHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhh
Q 000374 1081 INCLQTTVLSHSTKGNLPVAYLNSVLDVYEYAL 1113 (1608)
Q Consensus 1081 ~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~i~ 1113 (1608)
++.+..++..++.. .....+..+-++..+.
T Consensus 245 l~~l~~~i~~lGi~---~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 245 LQQLPPIIDELGIS---SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHHHHHh
Confidence 88888888776532 2345555555555443
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=38.71 E-value=68 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 000374 739 VVGHFLELADNSNQHLRNIALDALDQSI 766 (1608)
Q Consensus 739 l~~hli~v~~~~~~~lr~~Avd~L~~l~ 766 (1608)
+..+|.+..+++++.+|..|+..|.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3567888899999999999999998764
No 29
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=37.34 E-value=90 Score=30.11 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000374 1028 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1086 (1608)
Q Consensus 1028 ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~ 1086 (1608)
+.+-+.+..+..+...+.+.|.. .|..+++.+......++.++...|+++++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~S------GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIKS------GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 67888999999999999887763 699999999999988889999999999875
No 30
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=34.73 E-value=1.2e+02 Score=40.74 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=66.9
Q ss_pred HHHHHHhCchhhccCHhhHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000374 262 LEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLV 341 (1608)
Q Consensus 262 iesvL~n~~~~F~~h~el~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~~~~L~~E~EvfLs~Li 341 (1608)
+.-+++.-..+..=.|+|.+-.+.++||+++.++.++++ .|....++.-+|--++. -....+-.+|.++..|+
T Consensus 547 l~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPsli 619 (1005)
T KOG2274|consen 547 LVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLI 619 (1005)
T ss_pred HHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHH
Confidence 333444444556668999999999999999999887653 56554445555554444 33456778999999999
Q ss_pred HhccCC---CcHHHHHHHHHHHHHHh
Q 000374 342 KVTFLD---LPLWHRILVLEILRGFC 364 (1608)
Q Consensus 342 ~~l~~~---~~~w~r~L~LEvl~~l~ 364 (1608)
.++..+ .|.-.-.++++++.-+.
T Consensus 620 sil~~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 620 SVLQLNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred HHHcCcccccCchhhHHHHHHHHHHH
Confidence 998653 35556678888887554
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=34.67 E-value=3.2e+02 Score=35.43 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCC-CcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcchHHHH-----HHHH
Q 000374 22 YPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEI-----FSML 95 (1608)
Q Consensus 22 ~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~~~l~~I-----l~~l 95 (1608)
++.||.-|=+.|..+-..+.. .++...++++.-++.+....+..+...|+.+|.+|..+. ..+..+ +..|
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~----~~~~~l~~~~~~~~L 165 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP----EGLEQLFDSNLLSKL 165 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc----hhHHHHhCcchHHHH
Q ss_pred HhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHH--HHHHhhhhcccccChHHHHHHHHHHHHHHH
Q 000374 96 KNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQ--ALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1608)
Q Consensus 96 ~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~--~L~~C~~L~~~sks~~~v~~TA~ATL~Qlv 162 (1608)
.......++.+.+|++.++..+... .+-+=+.+.. ++....+...+ ++. .|+-+|-..+.+|.
T Consensus 166 ~~l~~~~~~~vR~Rv~el~v~i~~~--S~~~~~~~~~sgll~~ll~eL~~-dDi-Lvqlnalell~~La 230 (503)
T PF10508_consen 166 KSLMSQSSDIVRCRVYELLVEIASH--SPEAAEAVVNSGLLDLLLKELDS-DDI-LVQLNALELLSELA 230 (503)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhc--CHHHHHHHHhccHHHHHHHHhcC-ccH-HHHHHHHHHHHHHH
No 32
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.02 E-value=1.4e+02 Score=33.15 Aligned_cols=89 Identities=10% Similarity=0.237 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcch-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCch
Q 000374 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1608)
Q Consensus 49 ~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~~~-l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g 127 (1608)
..|+..++-.|-+.++++-..|+..|+-.+.+|++.|.. ++.++ ||. ++ .++.+.=+-.+.+..+...|..-++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999999999999998865 55444 443 23 24467778888888888777554533
Q ss_pred HHHHHHHHHhhhhcc
Q 000374 128 DNMAQALGICLRLLE 142 (1608)
Q Consensus 128 ~~L~~~L~~C~~L~~ 142 (1608)
...++++.+|..+.
T Consensus 83 -~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 83 -RYSEGIRLAFDYQR 96 (187)
T ss_pred -HHHHHHHHHHHHHH
Confidence 46677888887754
No 33
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.98 E-value=6.1e+02 Score=27.52 Aligned_cols=101 Identities=16% Similarity=0.024 Sum_probs=66.9
Q ss_pred HHHHHHhCchhhccC-HhhHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Q 000374 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1608)
Q Consensus 262 iesvL~n~~~~F~~h-~el~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~li~~~-~~~L~~E~EvfLs~ 339 (1608)
|-+.|.+++.+-... ....+.++.++-.+| +++.. ..-+ .-+.++...++.- .+.|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw--~G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRW--AGLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566666666554 666677777766665 43110 1112 2455555556654 57888999999999
Q ss_pred HHHhccCCCcHHHHHHHHHHHHHHh----cChHHHHHHH
Q 000374 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLLF 374 (1608)
Q Consensus 340 Li~~l~~~~~~w~r~L~LEvl~~l~----~dp~ll~~iy 374 (1608)
++++|+.+.|.--+..+...+..|+ .-|++.|++-
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~ 110 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIA 110 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh
Confidence 9999988777777778887777664 5677777763
No 34
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=29.80 E-value=1e+03 Score=28.27 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhc
Q 000374 1022 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHS 1092 (1608)
Q Consensus 1022 ~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~ 1092 (1608)
+.+.|...-..+...+.-+.. .-.+.+...+.|-.++=.+-.++...+.++-..|..+|+.++....
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~----~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVL----SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccCCcccCCcccHHHHHHHHH----hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 457888765444222222222 1223455667888888888888888899999999999999997654
No 35
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=29.55 E-value=1.1e+03 Score=28.53 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 000374 1028 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLD 1107 (1608)
Q Consensus 1028 ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~~~~~~~~~~~~~ 1107 (1608)
+|+.-+|.++.++|.+++.. +...+.+.+|++.+.++++.++.+=...|.+.+.=+....+.. .-..++++....
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g-~~~~ei~~~~~~ 132 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG-EDSEEIFEELKP 132 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHH
Confidence 78999999999999887741 2234568899999999998877533334455554443433322 224677777777
Q ss_pred HHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHccCCCCCCCccccC--CCCHHHHH
Q 000374 1108 VYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFG--HVPPVLRT 1185 (1608)
Q Consensus 1108 ~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~~~~~~~~~~~d~~--~~s~lQ~~ 1185 (1608)
+..+++..... ..+..+.++.+++-+.-- ..-+.+.+...+..|.......++..+...+.+. .-+++..+
T Consensus 133 ~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 133 VLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 77666543211 123446666666554321 2345677776666666332211222222222222 24689999
Q ss_pred HHHhccccC
Q 000374 1186 ILEILPLLS 1194 (1608)
Q Consensus 1186 vl~~l~~i~ 1194 (1608)
.|.+--++-
T Consensus 206 AL~aW~lLl 214 (309)
T PF05004_consen 206 ALSAWALLL 214 (309)
T ss_pred HHHHHHHHH
Confidence 998855443
No 36
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.88 E-value=38 Score=41.50 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=16.7
Q ss_pred cCCchhhHHHHHHHHHHH
Q 000374 439 LVASEAHSITLAIEGLLG 456 (1608)
Q Consensus 439 ll~~Ea~~I~~~~e~la~ 456 (1608)
.++||||+|+|++|.|+-
T Consensus 289 rvqgEAqKveRlIeAFsq 306 (627)
T KOG0931|consen 289 RVQGEAQKVERLIEAFSQ 306 (627)
T ss_pred ecccHHHHHHHHHHHHHH
Confidence 589999999999999985
No 37
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=1.6e+03 Score=30.40 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=75.2
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCcccccccccccCCCcc
Q 000374 932 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 1010 (1608)
Q Consensus 932 LL~~L~~L~~D~-R~EVRn~AiqTLfril~~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~~~~~~ 1010 (1608)
++..+.++-.|+ ..-||=.|++||--.++.. .|+++.....+ ..+|-++-.+.+..
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~l-enlf~~lfkll~~~-------------------- 583 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYL-ENLFVLLFKLLKAV-------------------- 583 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhH-HHHHHHHHHHHHHH--------------------
Confidence 455667778887 8999999999998888743 35555554444 33443333333210
Q ss_pred chhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHH
Q 000374 1011 VHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN--GSKEVSLAAINCLQTTV 1088 (1608)
Q Consensus 1011 ~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~--~~~els~aa~~sL~~lL 1088 (1608)
+=-+|++.+++.++.++.+--+.+.. .=..+++|+-.+... +..-+..|.+..|++++
T Consensus 584 --------------~e~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 584 --------------EECDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred --------------hhhhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 00167888888888887666555542 234556666655543 22346778888888888
Q ss_pred hhhcCC
Q 000374 1089 LSHSTK 1094 (1608)
Q Consensus 1089 ~~~~~~ 1094 (1608)
...+.+
T Consensus 644 ~alg~q 649 (978)
T KOG1993|consen 644 NALGAQ 649 (978)
T ss_pred HHhccC
Confidence 776643
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.18 E-value=5.5e+02 Score=35.85 Aligned_cols=127 Identities=16% Similarity=0.273 Sum_probs=81.5
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHhcCCCC--CcccCc-hhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCc---
Q 000374 12 RALSAEARRRYPAVKDGAEHAILKLRSLSSP--SELAQS-EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAP--- 85 (1608)
Q Consensus 12 ~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~--~~l~~~-~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~--- 85 (1608)
+.|.+-++--|+..|+.+ +-.|.+++.. ..+..+ ++++.-|..+....+..+-..|+.++--++.+-=...
T Consensus 121 ~~L~q~~~S~~~~~rE~a---l~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESA---LLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHhcCCCcchhHHH---HHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 444555555666666554 4444444322 123333 3455555555555555577778888777776653332
Q ss_pred ----chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhhhhcc
Q 000374 86 ----SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1608)
Q Consensus 86 ----~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~ 142 (1608)
..++.+++.+.+..+.+|++.---+|.++-.++-+... +-++.|..++..|..+..
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhh
Confidence 24778888888887777776667788888888877543 348899999999999954
No 39
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=28.13 E-value=44 Score=37.14 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHH
Q 000374 438 VLVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
+.+|||+|.|+|++|+||..++
T Consensus 93 f~lpgE~q~Idrile~Fs~~y~ 114 (187)
T smart00222 93 FRLPGEAQKIDRLLEAFSSRYC 114 (187)
T ss_pred CcCCchHHHHHHHHHHHHHHHH
Confidence 3589999999999999998654
No 40
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.85 E-value=1.1e+03 Score=27.90 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=44.5
Q ss_pred cchhcccCcccC-CChHHHHHHHhhhhhccchHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 000374 784 GTSDERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 850 (1608)
Q Consensus 784 ~~IL~~~g~~l~-sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~Dfl~~Lp~~~~~~~V~~L~~F 850 (1608)
+.+++++...++ .|=.-|.+++..+..++++..+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 107 ~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 107 DSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 344555544443 3445677888888888899999999999999998875 2 34455666665554
No 41
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=27.82 E-value=43 Score=37.15 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.6
Q ss_pred cCCchhhHHHHHHHHHHHHHH
Q 000374 439 LVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 439 ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
.+|||+|.|+|++|.|++.++
T Consensus 93 ~lpgE~Q~Idrile~Fs~~y~ 113 (185)
T cd00171 93 RLPGEAQKIDRLLEKFSERYC 113 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 489999999999999998654
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.31 E-value=1.6e+03 Score=29.86 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhHHH
Q 000374 1024 KQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLN 1103 (1608)
Q Consensus 1024 k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~~lL~~~~~~~~~~~~~~~ 1103 (1608)
+.-.|-.-.+++.++.+-..-+.. .++.|.+-|-..|..+. ..+=...|+.-|-+|+..+.. -+-
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp--~l~~f~~pWc~sl~~i~------DneEK~sAFrG~c~mi~vNp~-------~vv 824 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAP--HLDSFMRPWCTSLRNID------DNEEKESAFRGLCNMINVNPS-------GVV 824 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcch--hHHHHHHHHHHHhcccc------cchhHHHHHHHHHHheeeCch-------hhh
Confidence 344454455565555444333322 34678888876665333 234557889999999865432 233
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHH
Q 000374 1104 SVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELY 1139 (1608)
Q Consensus 1104 ~~~~~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly 1139 (1608)
..+.+|+.++....+++ +...+-.+..+++|....
T Consensus 825 ~~~~f~c~aiAsw~np~-~~l~~~f~kiL~g~k~qv 859 (885)
T KOG2023|consen 825 SSFIFICDAIASWSNPE-DDLRDEFYKILQGFKNQV 859 (885)
T ss_pred hhhHHHHHHHhcccChH-HHHHHHHHHHHHHHHHHh
Confidence 34556665544443332 111122334455655554
No 43
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.55 E-value=1.4e+03 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhcC
Q 000374 813 EKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQK 854 (1608)
Q Consensus 813 ~~~lv~~aF~~LqlI~~Dfl~~Lp~~~~~~~V~~L~~F~~q~ 854 (1608)
.++.++.+++.+.-|+. ...+|.+++..||.+|+.-....
T Consensus 190 ~~~di~~~L~vldaii~--y~~iP~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 190 SEDDIEACLSVLDAIIT--YGDIPSESLSPCIEVLCSIVNSV 229 (464)
T ss_pred cHHHHHHHHHHHHHHHH--cCcCChHHHHHHHHHHhhHhccc
Confidence 45677899999999986 57799999999999999887665
No 44
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.99 E-value=4.2e+02 Score=32.11 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHHHHHHhhhhhccCCccccccccccc
Q 000374 927 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGT 1005 (1608)
Q Consensus 927 ~lW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~-~~g~~ls~~~W~~~f~~VLFPLL~~l~~~~~~~s~~e~~~~~~~~ 1005 (1608)
.+--|++..+..--.+.-|+.|..-+=.++.++. ..|+.+.+ .-..++..|.-|.++=+.+-
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d---------------- 129 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD---------------- 129 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------------
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------------
Confidence 3434444433333334667888877777776655 45655543 33456666666666655210
Q ss_pred CCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 000374 1006 RGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQ 1085 (1608)
Q Consensus 1006 ~~~~~~~~lihhsr~~~~k~W~ET~vlal~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~aa~~sL~ 1085 (1608)
..++-|-++--.+.+..+...+|+.+..++. ..+..+++.+...++....+++..+++.+.
T Consensus 130 -----------------~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~~f~~~idsi~wg~kh~~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 130 -----------------FEEYPEHRVNFFKLLRAINEHCFPALLQLPP--EQFKLVIDSIVWGFKHTNREISETGLNILL 190 (319)
T ss_dssp -----------------SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H--HHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred -----------------hhhChHHHHHHHHHHHHHHHHhHHHHHcCCH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 0112255666677777777778887766543 457788999999999999999999999999
Q ss_pred HHHhhhcC
Q 000374 1086 TTVLSHST 1093 (1608)
Q Consensus 1086 ~lL~~~~~ 1093 (1608)
+++.....
T Consensus 191 ~ll~~~~~ 198 (319)
T PF08767_consen 191 ELLNNVSK 198 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99976654
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.25 E-value=2e+02 Score=28.22 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhcCCCC-CcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccC
Q 000374 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1608)
Q Consensus 13 ~L~~EskRK~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~ 81 (1608)
.|..--+..++++|..+=.++..+-..... ........++.+++-...+++.++...|+.+|..|...+
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 344444566788888877777776544211 111223467777777778889999999999999997654
No 46
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=23.58 E-value=1.3e+02 Score=29.34 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=33.1
Q ss_pred hhhHH--HHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHH
Q 000374 1023 QKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 1069 (1608)
Q Consensus 1023 ~k~W~--ET~vlal~gl~~lf~~~~~~l~~-l~~F~~~W~~LL~~~~~~~ 1069 (1608)
...|. |+...++.|++++|..|+..... .+...---..|.+|++.+.
T Consensus 16 sRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 16 SRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred cccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 35574 88999999999999999987632 2222323466778877653
No 47
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=23.56 E-value=7.5e+02 Score=28.97 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHhcCCCCCcccCchhHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcch
Q 000374 9 SDLRALSAEARR-RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1608)
Q Consensus 9 ~dL~~L~~EskR-K~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~~i~~~~ 87 (1608)
.+|+.|+.--+. +.|.+++.+--++......+...+..+.-..+.++.--..++++++-..|+.+|.-|-.. .=....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHH
Confidence 577888887664 689999999999998877666666666667777777778899999999999999866322 111123
Q ss_pred HHHHHHHHHhc--cCCCCchHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhhhhcc
Q 000374 88 LKEIFSMLKNH--ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1608)
Q Consensus 88 l~~Il~~l~~~--~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~ 142 (1608)
++.-+.-+++- +..-+..+|+--|+.|..+-.+. .+-..+.+.+.-+++|..
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHH
Confidence 33334444432 12224468999999999884432 123456777777777743
No 48
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=22.36 E-value=63 Score=36.00 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHHH
Q 000374 438 VLVASEAHSITLAIEGLLGVVFT 460 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~t 460 (1608)
+.+|||+|.|+|+++.||+.++.
T Consensus 96 f~LpgE~q~idril~~Fs~~y~~ 118 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYYE 118 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHHH
Confidence 45899999999999999986653
No 49
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.56 E-value=1.7e+02 Score=28.66 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=63.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHccC------CCCcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCC
Q 000374 50 DILRIFLMACEVRTVKLSVIGLSCIQKLISHD------AVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLH 123 (1608)
Q Consensus 50 ~~l~Pfllac~sk~~Kl~~iaL~~lqkLi~~~------~i~~~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~ 123 (1608)
..+.+++--+...+.++..-|+.+|..+.... ++....++.+++.|. ..+..|+-..+.+|-.+..+...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHccCcHH
Confidence 46677777777888999999999999988762 122234444454443 24557888888888888765321
Q ss_pred CCchHHHHH--HHHHhhhhcccccChHHHHHHHHHHHHHHH
Q 000374 124 PENEDNMAQ--ALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1608)
Q Consensus 124 ~~~g~~L~~--~L~~C~~L~~~sks~~~v~~TA~ATL~Qlv 162 (1608)
. -+.+.+ ++....++ ....+. -++..|.++|.++.
T Consensus 83 ~--~~~~~~~g~l~~l~~~-l~~~~~-~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 N--KLIVLEAGGVPKLVNL-LDSSNE-DIQKNATGALSNLA 119 (120)
T ss_pred H--HHHHHHCCChHHHHHH-HhcCCH-HHHHHHHHHHHHhh
Confidence 0 011111 23333333 223345 67888888888764
Done!