Query 000374
Match_columns 1608
No_of_seqs 292 out of 731
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 16:02:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000374.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_154-158//hhsearch_pdb/000374hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku1_A ARF guanine-nucleotide 1.0 1 1 25.0 2.9 24 438-461 113-136 (230)
2 1b3u_A Protein (protein phosph 1.0 1 1 24.5 19.8 20 942-961 452-471 (588)
3 1r8s_E ARNO; protein transport 1.0 1 1 24.4 2.9 22 438-459 102-123 (203)
4 3ltl_A Brefeldin A-inhibited g 1.0 1 1 24.1 2.9 22 438-459 108-129 (211)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 23.4 2.9 22 438-459 100-121 (356)
6 2qk2_A LP04448P; mini spindles 1.0 1 1 23.2 20.5 115 927-1092 94-208 (242)
7 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 22.8 2.9 23 438-460 104-126 (347)
8 2vgl_B AP-2 complex subunit be 1.0 1 1 20.8 26.2 36 732-767 115-150 (591)
9 1vsy_5 Proteasome activator BL 1.0 1 1 19.7 4.6 60 1024-1090 814-874 (997)
10 4b8j_A Importin subunit alpha- 1.0 1 1 19.5 20.0 18 747-764 253-270 (528)
No 1
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 558760237999999999789786
Q 000374 438 VLVASEAHSITLAIEGLLGVVFTV 461 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~sv 461 (1608)
..+|||+|+|+|++|.||+.++.-
T Consensus 113 f~LPGEaQ~IdRile~Fa~rY~~~ 136 (230)
T 1ku1_A 113 FRLPGESQQIERIIEAFSSAYCEN 136 (230)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 858851999999999999999981
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 89778999999999999974
Q 000374 942 DERPEVRNSAIRTLFQTLGS 961 (1608)
Q Consensus 942 D~R~EVRn~AIqTLfril~s 961 (1608)
|+..+||..|+.++-.+...
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 98199999999999999999
No 3
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=24.39 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5587602379999999997897
Q 000374 438 VLVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
..+|||+|+|+|++|.||+.++
T Consensus 102 f~LPgEaQ~IdRile~Fa~ry~ 123 (203)
T 1r8s_E 102 FRLPGKAQKIDRMMEAFAQRYC 123 (203)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6178716899999999999999
No 4
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5587602379999999997897
Q 000374 438 VLVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
..+|||+|+|+|++|.||+.++
T Consensus 108 f~LPgEaQ~IdRile~Fa~ry~ 129 (211)
T 3ltl_A 108 FRLPGEAQKIDRLMEKFAARYL 129 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7179842699999999999999
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5587602379999999997897
Q 000374 438 VLVASEAHSITLAIEGLLGVVF 459 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1608)
..+|||+|+|+|++|.|++.++
T Consensus 100 frLPGEaQ~IDRile~FA~rY~ 121 (356)
T 1xsz_A 100 FKLPGEAQKIDRLVQSFSGAYF 121 (356)
T ss_dssp SCBCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8488508899999999999999
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=23.16 Aligned_cols=115 Identities=15% Similarity=-0.029 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34999999998730389778999999999999974169999779999999958977997443201488300002233667
Q 000374 927 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTR 1006 (1608)
Q Consensus 927 ~LW~~LL~~L~~l~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~i~~~VLFPLld~l~~~~~~~~~~e~~~~~~~~~ 1006 (1608)
.++-.++-.|.....|+...||..|..+|-.++...+ +.. ++|.+-....
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----------~~~-ll~~l~~~l~------------------ 143 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----------LEA-QQESIVESLS------------------ 143 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----------HHH-HHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-----------HHH-HHHHHHHHHC------------------
T ss_conf 8999999999999768988999999999999997289-----------999-9999999884------------------
Q ss_pred CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 88641112034563123318999999999999999965332103453289999999999999818905799999999999
Q 000374 1007 GGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1086 (1608)
Q Consensus 1007 ~~~~~~~~ih~sr~~~~k~w~ET~vlal~gl~~lf~~~~~~l~~~~~F~~~W~~LL~~~~~~~~~~~~eis~a~~~~L~~ 1086 (1608)
+ +.| ..+.-++..+..++..+-.. ..+...+..++.++..++.....++-.++.+++..
T Consensus 144 -------------~---~~~-~vr~~~l~~l~~~l~~~~~~----~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 144 -------------N---KNP-SVKSETALFIARALTRTQPT----ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp -------------C---SCH-HHHHHHHHHHHHHHTTCCGG----GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -------------C---CCH-HHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -------------8---983-99999999999999871887----76689999999999988469985899999999999
Q ss_pred HHHHHC
Q ss_conf 996206
Q 000374 1087 TVLSHS 1092 (1608)
Q Consensus 1087 lL~~~~ 1092 (1608)
+.....
T Consensus 203 l~~~vg 208 (242)
T 2qk2_A 203 LIKLMG 208 (242)
T ss_dssp HHHHHC
T ss_pred HHHHCC
T ss_conf 999849
No 7
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 55876023799999999978978
Q 000374 438 VLVASEAHSITLAIEGLLGVVFT 460 (1608)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~s 460 (1608)
..+|||+|+|+|++|.||+.++.
T Consensus 104 f~lpgE~q~idril~~Fa~~y~~ 126 (347)
T 2r09_A 104 FRLPGEAQKIDRMMEAFASRYCL 126 (347)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86897267899999999999998
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=20.80 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 213499999999999708999999999999999999
Q 000374 732 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSIC 767 (1608)
Q Consensus 732 ~~~iW~~i~~hli~v~~~~~~~lr~~Av~~L~~l~~ 767 (1608)
...+++.+...+.....++++.+|..|+.++.++..
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 077899999999998179985899999999999985
No 9
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=1.00 E-value=1 Score=19.66 Aligned_cols=60 Identities=23% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 31899999999999999996533210345328999999999999981890-57999999999999962
Q 000374 1024 KQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS-KEVSLAAINCLQTTVLS 1090 (1608)
Q Consensus 1024 k~w~ET~vlal~gl~~lf~~~~~~l~~~~~F~~~W~~LL~~~~~~~~~~~-~eis~a~~~~L~~lL~~ 1090 (1608)
..| ++..++.-+--++-.++-.+... .-..+++.+..++.... .||-+.|-.+|..++..
T Consensus 814 ~sW--~R~~~L~~lq~~~f~n~f~l~~~-----~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 814 SSN--QTKLQLAFIQHFLSAELLQLTEE-----EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp CSS--SHHHHHHHHHHHHHHHTTTSCTT-----HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred CCH--HHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 828--99999999999999999972787-----89999999999866996088999999999999973
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=6.6
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 708999999999999999
Q 000374 747 ADNSNQHLRNIALDALDQ 764 (1608)
Q Consensus 747 ~~~~~~~lr~~Av~~L~~ 764 (1608)
..+.+..++..|+.+|..
T Consensus 253 L~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 253 IHSNDEEVLTDACWALSY 270 (528)
T ss_dssp TTCCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHH
T ss_conf 779987899999999999
Done!