BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000375
(1607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 216 IGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELY 274
IG + L IL+L H+D+ +P E+G L L +LDLS+ KL P +S+L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 275 MGNS 278
+ N+
Sbjct: 711 LSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 216 IGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELY 274
IG + L IL+L H+D+ +P E+G L L +LDLS+ KL P +S+L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 275 MGNS 278
+ N+
Sbjct: 708 LSNN 711
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 892 EISECDKLEKLVPSSVS------LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVID 945
EI+ DK + + ++ V +SK ++ I L TA+SLVKL +M ID
Sbjct: 398 EITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGID 457
Query: 946 CKMLQQIILQ 955
K L + + +
Sbjct: 458 GKALTETVAR 467
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 892 EISECDKLEKLVPSSVS------LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVID 945
EI+ DK + + ++ V +SK ++ I L TA+SLVKL +M ID
Sbjct: 398 EITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGID 457
Query: 946 CKMLQQIILQ 955
K L + + +
Sbjct: 458 GKALTETVAR 467
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 159 SENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTLTLESCLLGDVAT-- 215
SEN + + D F+ + L+ L + + L SL LTLE C L + T
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 216 IGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLS 268
+ L L +L LRH ++ + +L RLK+L++S+ L + PN + L+
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 892 EISECDKLEKLVPSSVS------LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVID 945
EI+ DK + + ++ V +SK ++ I L TA+SLVKL +M ID
Sbjct: 398 EITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGID 457
Query: 946 CKMLQQIILQ 955
K L + + +
Sbjct: 458 GKALTETVAR 467
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 909 LENLVTLEVSKCNELIHLMTLSTAESLVKLNRMNVIDCKMLQQIILQ 955
++ V +SK ++ I L TA+SLVKL +M ID K L + + +
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVAR 467
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 138 RGIYEFPERLECPKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGC 196
R + P+ L P+ K L ++S LR+PD+ F ++ELRVL + R SL +
Sbjct: 41 RNLTHVPKDLP-PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFL 97
Query: 197 L-ISLRTLTLESCLLGDVA--TIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLS 251
L L + L +++ + L+ L+ LS DV + E G LT+L L LS
Sbjct: 98 FNQDLEYLDVSHNRLQNISCCPMASLRHLD-LSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 166 IPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLGDVATI-----GDL 219
IP+L + L L +G R + P S L SLR L L + VATI DL
Sbjct: 171 IPNL--TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL---MHAQVATIERNAFDDL 225
Query: 220 KKLEILSLRHSDVEELPGEI 239
K LE L+L H+++ LP ++
Sbjct: 226 KSLEELNLSHNNLMSLPHDL 245
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLF 428
E + + ++ F L L +LKH +N+ I I +E+ N +++ L
Sbjct: 37 EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM 96
Query: 429 ---LHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464
LH ++ +M+ + + LR +KV N+ H
Sbjct: 97 QTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIH 135
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 166 IPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLGDVATI-----GDL 219
IP+L + L L +G R + P S L SLR L L + VATI DL
Sbjct: 171 IPNL--TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL---MHAQVATIERNAFDDL 225
Query: 220 KKLEILSLRHSDVEELPGEI 239
K LE L+L H+++ LP ++
Sbjct: 226 KSLEELNLSHNNLMSLPHDL 245
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium
And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium
And Long Chain Fatty Acyl Lysine
Length = 290
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 37/163 (22%)
Query: 1338 PGVHISEWPMLKY--------LDISGCAELEI-----LASKFLSLG------ETHVDGQH 1378
P ++ + W KY DIS E+EI S SLG +VDG H
Sbjct: 78 PRIYGTIWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLH 137
Query: 1379 DSQTQQPFFS-----FDKVAFPSLKELRLSRLPKLFWLCKETSHPRNVFQNECSKLDILV 1433
++ S F+ V K ++L+++ + ++TSH + EC I
Sbjct: 138 EASGNTKVISLHGNVFEAVCCTCNKIVKLNKI-----MLQKTSHFMHQLPPECPCGGIFK 192
Query: 1434 PSSVSFGNL--------STLEVSKCGRLMNLMTISTAERLVNL 1468
P+ + FG + + E++KC L+ + T ST NL
Sbjct: 193 PNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNL 235
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 200 LRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVI 259
L L L+ C L + G L L L L H+ ++ LP L L +LD+S +L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 260 RPNVISSLSRLEELYM-GN 277
+ L L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,449,382
Number of Sequences: 62578
Number of extensions: 1706337
Number of successful extensions: 3582
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3505
Number of HSP's gapped (non-prelim): 90
length of query: 1607
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1495
effective length of database: 7,964,601
effective search space: 11907078495
effective search space used: 11907078495
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)