Query 000375
Match_columns 1607
No_of_seqs 833 out of 6387
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-39 7.1E-44 411.5 17.7 397 2-479 391-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.5E-31 5.5E-36 361.3 31.2 473 4-637 418-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4E-28 8.7E-33 332.5 27.6 192 128-329 69-268 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-27 2.4E-32 328.1 27.4 511 149-829 68-583 (968)
5 PLN03210 Resistant to P. syrin 99.8 9.9E-19 2.1E-23 238.6 27.7 342 127-525 557-909 (1153)
6 KOG4194 Membrane glycoprotein 99.8 5.1E-20 1.1E-24 208.6 7.0 388 127-603 51-447 (873)
7 KOG0444 Cytoskeletal regulator 99.8 2.8E-20 6E-25 211.1 -4.4 284 153-484 10-300 (1255)
8 KOG4194 Membrane glycoprotein 99.7 7.7E-19 1.7E-23 199.1 6.1 337 127-486 77-427 (873)
9 KOG0444 Cytoskeletal regulator 99.7 2.8E-20 6E-25 211.1 -6.2 319 127-492 54-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.3E-20 2.8E-25 204.5 -14.0 177 127-315 44-222 (565)
11 KOG0618 Serine/threonine phosp 99.7 7.8E-19 1.7E-23 210.6 -1.4 500 133-756 3-508 (1081)
12 KOG0472 Leucine-rich repeat pr 99.7 8.8E-20 1.9E-24 198.1 -14.2 198 128-329 68-283 (565)
13 KOG0618 Serine/threonine phosp 99.6 1.4E-17 3.1E-22 199.8 -1.9 109 690-831 356-465 (1081)
14 KOG0617 Ras suppressor protein 99.5 1.8E-16 4E-21 152.5 -5.8 165 142-318 25-192 (264)
15 KOG0617 Ras suppressor protein 99.5 1.5E-15 3.2E-20 146.3 -5.2 160 127-298 32-195 (264)
16 KOG4341 F-box protein containi 99.4 1.3E-15 2.9E-20 167.9 -6.9 301 1082-1479 139-439 (483)
17 KOG4341 F-box protein containi 99.4 3.5E-15 7.5E-20 164.7 -8.3 252 1220-1538 188-441 (483)
18 PRK15387 E3 ubiquitin-protein 99.3 2.9E-11 6.2E-16 152.6 16.7 156 130-315 203-358 (788)
19 PRK15387 E3 ubiquitin-protein 99.2 5.3E-10 1.2E-14 141.3 18.1 171 127-330 221-391 (788)
20 PRK15370 E3 ubiquitin-protein 99.2 2.5E-10 5.5E-15 145.4 15.0 176 128-329 178-354 (754)
21 PRK15370 E3 ubiquitin-protein 99.1 1.1E-10 2.3E-15 148.8 11.5 144 150-317 178-322 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.1 5.7E-11 1.2E-15 153.6 3.2 272 1163-1543 567-849 (889)
23 KOG4237 Extracellular matrix p 99.0 1.4E-11 3.1E-16 135.2 -5.2 140 137-279 55-199 (498)
24 KOG4237 Extracellular matrix p 98.8 2.6E-10 5.6E-15 125.5 -2.0 198 127-332 66-333 (498)
25 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.6E-15 131.7 -3.4 178 127-318 74-253 (722)
26 KOG0532 Leucine-rich repeat (L 98.8 3.3E-10 7.2E-15 130.2 -4.6 184 132-329 54-242 (722)
27 PF14580 LRR_9: Leucine-rich r 98.7 6.5E-09 1.4E-13 107.7 3.9 129 173-307 17-148 (175)
28 PF14580 LRR_9: Leucine-rich r 98.7 5.5E-09 1.2E-13 108.2 3.0 137 182-327 4-146 (175)
29 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.5E-14 112.9 -1.0 136 173-317 282-417 (490)
30 cd00116 LRR_RI Leucine-rich re 98.6 8.5E-09 1.8E-13 122.9 0.0 83 172-254 78-176 (319)
31 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.5E-13 108.0 -1.9 128 149-281 283-412 (490)
32 cd00116 LRR_RI Leucine-rich re 98.4 1.3E-07 2.9E-12 112.6 2.7 80 175-254 137-232 (319)
33 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.8E-12 112.6 5.4 170 148-329 114-285 (394)
34 COG4886 Leucine-rich repeat (L 98.3 3.7E-07 8E-12 112.0 5.2 148 129-280 117-267 (394)
35 KOG3207 Beta-tubulin folding c 98.1 8.2E-07 1.8E-11 100.1 0.5 187 127-315 120-317 (505)
36 KOG3207 Beta-tubulin folding c 98.1 6.2E-07 1.3E-11 101.0 -0.8 177 127-310 145-337 (505)
37 KOG1947 Leucine rich repeat pr 98.0 3.7E-07 8E-12 116.0 -4.1 68 1220-1288 241-308 (482)
38 PLN03150 hypothetical protein; 98.0 1.3E-05 2.8E-10 102.7 8.7 104 176-280 419-527 (623)
39 PF13855 LRR_8: Leucine rich r 98.0 7.3E-06 1.6E-10 69.7 3.8 58 221-279 2-60 (61)
40 KOG1947 Leucine rich repeat pr 98.0 1.2E-06 2.6E-11 111.3 -1.4 122 1220-1361 186-310 (482)
41 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 90.3 8.5 24 1568-1591 289-313 (426)
42 PLN03150 hypothetical protein; 97.9 1.9E-05 4.1E-10 101.3 7.7 104 199-310 419-526 (623)
43 KOG2120 SCF ubiquitin ligase, 97.9 2E-06 4.3E-11 91.8 -1.1 97 1246-1361 231-328 (419)
44 PF13855 LRR_8: Leucine rich r 97.9 1.1E-05 2.4E-10 68.5 3.5 13 177-189 3-15 (61)
45 KOG1859 Leucine-rich repeat pr 97.8 2.1E-07 4.5E-12 110.3 -10.4 180 124-315 105-295 (1096)
46 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-06 2.3E-11 93.8 -4.4 174 1043-1259 200-373 (419)
47 PRK15386 type III secretion pr 97.7 6.6E-05 1.4E-09 87.5 8.3 58 692-762 51-108 (426)
48 KOG0531 Protein phosphatase 1, 97.6 6.2E-06 1.3E-10 101.1 -2.9 104 148-254 93-197 (414)
49 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.6E-10 97.6 2.5 126 128-254 122-261 (699)
50 PF12799 LRR_4: Leucine Rich r 97.5 9.3E-05 2E-09 57.3 3.6 38 176-213 2-39 (44)
51 PF12799 LRR_4: Leucine Rich r 97.5 0.00015 3.2E-09 56.2 4.2 39 221-260 2-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.4 6.5E-06 1.4E-10 98.0 -6.5 121 198-330 164-288 (1096)
53 KOG0531 Protein phosphatase 1, 97.3 4.8E-05 1E-09 93.4 -0.4 171 127-313 94-269 (414)
54 KOG3665 ZYG-1-like serine/thre 97.1 0.00035 7.6E-09 89.1 3.7 106 149-254 121-231 (699)
55 KOG1909 Ran GTPase-activating 97.0 0.00012 2.6E-09 81.0 -0.8 181 128-312 92-311 (382)
56 PF00931 NB-ARC: NB-ARC domain 97.0 0.00032 6.9E-09 81.9 1.9 36 23-58 250-285 (287)
57 KOG1644 U2-associated snRNP A' 96.7 0.0019 4.2E-08 66.2 5.2 104 200-308 44-149 (233)
58 KOG4579 Leucine-rich repeat (L 96.6 0.00017 3.7E-09 68.7 -3.2 87 149-236 52-139 (177)
59 KOG1644 U2-associated snRNP A' 96.4 0.0047 1E-07 63.5 5.6 82 172-253 61-150 (233)
60 KOG1909 Ran GTPase-activating 96.4 0.0011 2.5E-08 73.5 0.9 131 148-280 155-310 (382)
61 KOG2982 Uncharacterized conser 96.3 0.0008 1.7E-08 72.6 -0.8 81 220-310 71-157 (418)
62 KOG2982 Uncharacterized conser 96.0 0.002 4.4E-08 69.5 0.6 83 148-230 69-156 (418)
63 KOG4579 Leucine-rich repeat (L 96.0 0.00092 2E-08 63.8 -2.0 90 172-262 50-141 (177)
64 KOG2739 Leucine-rich acidic nu 95.1 0.013 2.8E-07 63.3 2.4 78 200-280 45-128 (260)
65 KOG2123 Uncharacterized conser 94.3 0.0017 3.7E-08 69.4 -6.2 105 197-305 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 93.7 0.038 8.1E-07 59.8 2.3 82 173-254 63-154 (260)
67 KOG2123 Uncharacterized conser 93.5 0.0066 1.4E-07 65.2 -3.7 77 150-230 19-98 (388)
68 PF00560 LRR_1: Leucine Rich R 93.3 0.034 7.3E-07 35.8 0.8 21 221-241 1-21 (22)
69 KOG3864 Uncharacterized conser 91.8 0.036 7.7E-07 57.4 -1.0 71 1437-1513 122-192 (221)
70 PF00560 LRR_1: Leucine Rich R 91.5 0.065 1.4E-06 34.5 0.3 21 176-196 1-21 (22)
71 COG5238 RNA1 Ran GTPase-activa 90.1 0.17 3.7E-06 54.6 2.1 82 173-254 28-131 (388)
72 KOG3864 Uncharacterized conser 90.0 0.05 1.1E-06 56.4 -1.9 72 1316-1411 121-192 (221)
73 PF13306 LRR_5: Leucine rich r 89.1 1.2 2.6E-05 44.4 7.4 102 169-276 6-111 (129)
74 PF13504 LRR_7: Leucine rich r 88.0 0.33 7.1E-06 29.0 1.4 16 221-236 2-17 (17)
75 PF13306 LRR_5: Leucine rich r 86.0 2.1 4.5E-05 42.7 7.0 115 148-270 10-128 (129)
76 PF13504 LRR_7: Leucine rich r 84.5 0.61 1.3E-05 27.8 1.3 16 176-191 2-17 (17)
77 smart00367 LRR_CC Leucine-rich 84.2 0.45 9.8E-06 32.1 0.8 24 1439-1462 1-24 (26)
78 KOG0473 Leucine-rich repeat pr 83.7 0.031 6.7E-07 58.6 -7.4 83 172-254 39-122 (326)
79 COG5238 RNA1 Ran GTPase-activa 81.1 2 4.4E-05 46.7 4.5 136 194-329 26-193 (388)
80 KOG0473 Leucine-rich repeat pr 79.7 0.061 1.3E-06 56.5 -6.9 85 194-280 38-123 (326)
81 smart00370 LRR Leucine-rich re 77.7 1.7 3.8E-05 29.2 1.9 19 220-238 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 77.7 1.7 3.8E-05 29.2 1.9 19 220-238 2-20 (26)
83 smart00367 LRR_CC Leucine-rich 72.5 2.4 5.1E-05 28.6 1.5 16 1346-1361 2-17 (26)
84 smart00370 LRR Leucine-rich re 70.0 3.6 7.8E-05 27.6 1.9 22 242-264 1-22 (26)
85 smart00369 LRR_TYP Leucine-ric 70.0 3.6 7.8E-05 27.6 1.9 22 242-264 1-22 (26)
86 smart00364 LRR_BAC Leucine-ric 46.4 12 0.00026 25.2 1.2 17 221-237 3-19 (26)
87 KOG4308 LRR-containing protein 41.9 0.51 1.1E-05 58.2 -10.5 179 130-313 89-304 (478)
88 smart00365 LRR_SD22 Leucine-ri 39.9 24 0.00053 23.9 1.9 13 199-211 3-15 (26)
89 PF13516 LRR_6: Leucine Rich r 30.8 21 0.00045 23.4 0.5 12 1466-1477 2-13 (24)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-39 Score=411.50 Aligned_cols=397 Identities=23% Similarity=0.314 Sum_probs=275.5
Q ss_pred CCchhhHHhHHhcccccCCcchhhhHHHhccccCCCCccChhHHHHHHhhcCccccccCHHHHHHHHHHHHHHHHHcccc
Q 000375 2 GGEDANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLL 81 (1607)
Q Consensus 2 ~~~~~~i~~~L~lSY~~Lp~~~lK~CFly~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~~~ee~~~~~~~~i~~L~~~~ll 81 (1607)
+|+++.|+++|++|||+||++ +|.||+|||+|||||+|++++||.+||||||+.+....+.|++.|++||.+||.++++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 578999999999999999976 9999999999999999999999999999999988666778999999999999999999
Q ss_pred ccCC---CCcccchhhHHHHHHHHHHhhhhhcccCcEEeccCCcC----ccCCCCCcEEEeeCCCCCcCCCCCCCCCccE
Q 000375 82 LDGD---AEECLKMHDIIHSIAASVATEELMFNMQNVADLKEELD----KKTHKDPTAISIPFRGIYEFPERLECPKLKL 154 (1607)
Q Consensus 82 ~~~~---~~~~~~mHdlv~dla~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~lr~L~l~~~~~~~~~~~~~~~~Lr~ 154 (1607)
+.++ ...+|+|||+|||||.++|++.+...-..++....+.. ...+..+|++++.+|.+..++....+++|++
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 9876 34679999999999999999432211122222221111 1126789999999999998888888889999
Q ss_pred EEecCCCC-CCCCchhhhhCCCCccEEEEeCC-CCCCCCcccCCCCCCCEEEccCCCCCCccccCCCCCCcEEEcccCCC
Q 000375 155 FVLFSENL-SLRIPDLFFEGMTELRVLSFTGF-RFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDV 232 (1607)
Q Consensus 155 L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~-~~~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l 232 (1607)
|.+.+|.. ...++..+|..++.|||||+++| .+.++|++|++|.|||||+++++ .+
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t----------------------~I 607 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT----------------------GI 607 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC----------------------Cc
Confidence 99999873 44788888899999999999976 45678877766666666655554 56
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeecCCCC
Q 000375 233 EELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (1607)
Q Consensus 233 ~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 312 (1607)
+.+|.++++|++|++|++..+..+..+| +++..|++||+|.+...... .......++.++.+|+.+.......
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred cccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc-----cchhhHHhhhcccchhhheeecchh-
Confidence 6777778888888888877766555554 43566888888877654321 1234456666666666665543221
Q ss_pred CCCccc-ccccCcEeEEEecCccCCCCCCccccccccccccccccccchhhhhhccccccccccccCccccccccccCCC
Q 000375 313 VMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEV 391 (1607)
Q Consensus 313 ~~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~l~~~~~ 391 (1607)
.+-... .+.+| ......+.+.++.. ......+ ..
T Consensus 681 ~~~e~l~~~~~L-----------------------------------------~~~~~~l~~~~~~~-~~~~~~~---~~ 715 (889)
T KOG4658|consen 681 LLLEDLLGMTRL-----------------------------------------RSLLQSLSIEGCSK-RTLISSL---GS 715 (889)
T ss_pred HhHhhhhhhHHH-----------------------------------------HHHhHhhhhccccc-ceeeccc---cc
Confidence 100000 11111 11112222222111 1223334 78
Q ss_pred CCCccEEEeeccccceEEecccCcccCCc-ccccceeeccccccccccccccccccccccccEEEEeeCCCcccCCChhh
Q 000375 392 FPLLKHLHVQNVCEILYIVNLVGWEHCNA-FPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPM 470 (1607)
Q Consensus 392 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-fp~L~~L~l~~~~~l~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~ 470 (1607)
+.+|+.|.+.+|...+............. |+++..+.+.+|...+... .....|+|+.|.+..|..++.+.+ .
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----~~~f~~~L~~l~l~~~~~~e~~i~--~ 789 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----WLLFAPHLTSLSLVSCRLLEDIIP--K 789 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----hhhccCcccEEEEecccccccCCC--H
Confidence 89999999999876543322222222222 7788888888887766652 234568999999999988887654 3
Q ss_pred hhccccCcE
Q 000375 471 ARNLLQLQK 479 (1607)
Q Consensus 471 ~~~L~~L~~ 479 (1607)
...+..+++
T Consensus 790 ~k~~~~l~~ 798 (889)
T KOG4658|consen 790 LKALLELKE 798 (889)
T ss_pred HHHhhhccc
Confidence 344444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=2.5e-31 Score=361.32 Aligned_cols=473 Identities=21% Similarity=0.285 Sum_probs=317.7
Q ss_pred chhhHHhHHhcccccCCcchhhhHHHhccccCCCCccChhHHHHHHhhcCccccccCHHHHHHHHHHHHHHHHHcccccc
Q 000375 4 EDANVNSIIELSYNFLESEEAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGVYTLQEARKRVHMLVNFLKASRLLLD 83 (1607)
Q Consensus 4 ~~~~i~~~L~lSY~~Lp~~~lK~CFly~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~~~ee~~~~~~~~i~~L~~~~ll~~ 83 (1607)
.+.+|+++|++|||+|++++.|.||+|||+||+++.+ +.|..|+|.+.+.. + ..++.|+++||++.
T Consensus 418 ~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-------~----~~l~~L~~ksLi~~ 483 (1153)
T PLN03210 418 LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-------N----IGLKNLVDKSLIHV 483 (1153)
T ss_pred ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-------h----hChHHHHhcCCEEE
Confidence 4568999999999999874489999999999999754 45788888776531 1 12888999999987
Q ss_pred CCCCcccchhhHHHHHHHHHHhhhhhcccCcEEeccC-Cc-----CccCCCCCcEEEeeCCCCCcC--CC--CCCCCCcc
Q 000375 84 GDAEECLKMHDIIHSIAASVATEELMFNMQNVADLKE-EL-----DKKTHKDPTAISIPFRGIYEF--PE--RLECPKLK 153 (1607)
Q Consensus 84 ~~~~~~~~mHdlv~dla~~i~~~~~~~~~~~~~~~~~-~~-----~~~~~~~lr~L~l~~~~~~~~--~~--~~~~~~Lr 153 (1607)
.. +.++|||++|+||+.++++++....++-+.+.. .. ......+++.+++....+..+ .. ..+|++|+
T Consensus 484 ~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 484 RE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred cC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence 54 459999999999999999874221122222211 00 111145677777765555432 21 23788888
Q ss_pred EEEecCCC------CCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCCcEEE
Q 000375 154 LFVLFSEN------LSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV-ATIGDLKKLEILS 226 (1607)
Q Consensus 154 ~L~l~~~~------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 226 (1607)
.|.+..+. ....+|.++..-..+||+|++.++.+..+|..+ ...+|++|+++++.+..+ .++..+.+|++|+
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~ 640 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEE
Confidence 88886543 222456665333456888888888888888777 567888888888887755 6777888888888
Q ss_pred cccC-CCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEE
Q 000375 227 LRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (1607)
Q Consensus 227 l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 305 (1607)
++++ .+..+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|... ...+..+ ++++|+.|+
T Consensus 641 Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L-------~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 641 LRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL-------EILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc-------CccCCcC-CCCCCCEEe
Confidence 8776 4666764 777888888888888777778876 788888888888765321 1112222 566666666
Q ss_pred eecCC-CCCCCcccccccCcEeEEEecCccCCCCCCccccccccccccccccccchhhhhhccccccccccccCcccccc
Q 000375 306 VHIPD-AQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNALL 384 (1607)
Q Consensus 306 l~~~~-~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~ 384 (1607)
++++. ...+|. .+++|+.|++.+... ..+|
T Consensus 711 Lsgc~~L~~~p~-----------------------------------------------~~~nL~~L~L~~n~i--~~lP 741 (1153)
T PLN03210 711 LSGCSRLKSFPD-----------------------------------------------ISTNISWLDLDETAI--EEFP 741 (1153)
T ss_pred CCCCCCcccccc-----------------------------------------------ccCCcCeeecCCCcc--cccc
Confidence 65542 111111 012333444433221 1122
Q ss_pred ccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccccccccccccccccccccccEEEEeeCCCccc
Q 000375 385 ELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKH 464 (1607)
Q Consensus 385 ~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~p~L~~L~l~~c~~l~~ 464 (1607)
.. ..+++|++|.+.++.... + |..... +. +.....+++|+.|++++|+.+..
T Consensus 742 ~~---~~l~~L~~L~l~~~~~~~-l-----~~~~~~-----------------l~--~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 742 SN---LRLENLDELILCEMKSEK-L-----WERVQP-----------------LT--PLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred cc---ccccccccccccccchhh-c-----cccccc-----------------cc--hhhhhccccchheeCCCCCCccc
Confidence 22 245556666555432110 0 000000 00 01112357899999999988888
Q ss_pred CCChhhhhccccCcEEeeccccccceecccCCccccccccccccCccCeEEecCCCCCccccccCCCCCCCCcccchhhh
Q 000375 465 LFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTLA 544 (1607)
Q Consensus 465 lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 544 (1607)
+|. .++++++|+.|++++|..++.+|.. ..+++|+.|++.+|.++..+|
T Consensus 794 lP~--si~~L~~L~~L~Ls~C~~L~~LP~~-----------~~L~sL~~L~Ls~c~~L~~~p------------------ 842 (1153)
T PLN03210 794 LPS--SIQNLHKLEHLEIENCINLETLPTG-----------INLESLESLDLSGCSRLRTFP------------------ 842 (1153)
T ss_pred cCh--hhhCCCCCCEEECCCCCCcCeeCCC-----------CCccccCEEECCCCCcccccc------------------
Confidence 886 5788999999999999999888731 258899999999999887771
Q ss_pred hhhhcccCCCCccccccccccCCcccccccccccccccccCCcccccccccccceEEEecCCCcccccchhHHHhhcccc
Q 000375 545 FEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRLQ 624 (1607)
Q Consensus 545 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 624 (1607)
...++|+.|+++++.++.++.. . ..+++|+.|.+.+|++++.++.. ...+++|+
T Consensus 843 ------------------~~~~nL~~L~Ls~n~i~~iP~s-i-----~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~ 896 (1153)
T PLN03210 843 ------------------DISTNISDLNLSRTGIEEVPWW-I-----EKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLE 896 (1153)
T ss_pred ------------------ccccccCEeECCCCCCccChHH-H-----hcCCCCCEEECCCCCCcCccCcc--cccccCCC
Confidence 1236788999999988877543 2 24889999999999999987653 66889999
Q ss_pred EEEEecccccccc
Q 000375 625 QLEIRKCESMEAV 637 (1607)
Q Consensus 625 ~L~i~~c~~l~~i 637 (1607)
.+++++|++++.+
T Consensus 897 ~L~l~~C~~L~~~ 909 (1153)
T PLN03210 897 TVDFSDCGALTEA 909 (1153)
T ss_pred eeecCCCcccccc
Confidence 9999999998764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4e-28 Score=332.51 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=160.1
Q ss_pred CCCcEEEeeCCCCCcC-CCC-CCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCC-CCcccCCCCCCCEEE
Q 000375 128 KDPTAISIPFRGIYEF-PER-LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPS-LPSSIGCLISLRTLT 204 (1607)
Q Consensus 128 ~~lr~L~l~~~~~~~~-~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~Lr~L~ 204 (1607)
.+++.|+++++.+... +.. ..+++|++|++++|.+.+.+|..++..+++||+|++++|.++. +|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4789999999887743 332 3899999999999999889999988899999999999999874 554 5789999999
Q ss_pred ccCCCCC-C-ccccCCCCCCcEEEcccCCCc-ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCc
Q 000375 205 LESCLLG-D-VATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTE 281 (1607)
Q Consensus 205 L~~~~l~-~-l~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~ 281 (1607)
+++|.+. . +..++++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 9999987 3 378999999999999999876 78999999999999999999866677876 899999999999998875
Q ss_pred cccccccccChhhcCCCCCCCEEEeecCCCC-CCCccc-ccccCcEeEEE
Q 000375 282 WEIEGQSNASLVELKQLSRLTTLEVHIPDAQ-VMPQDL-LSVELERYRIC 329 (1607)
Q Consensus 282 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~i~ 329 (1607)
+..+..++++++|+.|+++.|... .+|..+ .+.+|+.|.+.
T Consensus 226 -------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 226 -------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred -------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 356678899999999999988754 455444 55666666553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-27 Score=328.11 Aligned_cols=511 Identities=18% Similarity=0.155 Sum_probs=291.7
Q ss_pred CCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCC-CCCcccC-CCCCCCEEEccCCCCCCccccCCCCCCcEEE
Q 000375 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFP-SLPSSIG-CLISLRTLTLESCLLGDVATIGDLKKLEILS 226 (1607)
Q Consensus 149 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 226 (1607)
..+++.|+++++.+.+.++..+ ..+++|++|++++|.+. .+|..+. ++.+||+|++++|.+......+.+.+|++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~-~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CCcEEEEEecCCCccccCChHH-hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 3579999999999888777665 89999999999999997 6887765 9999999999999987442346799999999
Q ss_pred cccCCCc-ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEE
Q 000375 227 LRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (1607)
Q Consensus 227 l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 305 (1607)
+++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+. +..+..++++++|+.|+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-------GQIPRELGQMKSLKWIY 218 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-------CcCChHHcCcCCccEEE
Confidence 9999987 78999999999999999999866778876 899999999999999875 34678899999999999
Q ss_pred eecCCCC-CCCccc-ccccCcEeEEEecCccCCCCCCccccccccccccccccccchhhhhhccccccccccccCccccc
Q 000375 306 VHIPDAQ-VMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQNAL 383 (1607)
Q Consensus 306 l~~~~~~-~~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l 383 (1607)
++.|... .+|..+ .+.+|+.|++..+.... ..+..+. -+++|+.|.+.++.......
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------------------~~p~~l~-~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG--------------------PIPSSLG-NLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceecc--------------------ccChhHh-CCCCCCEEECcCCeeeccCc
Confidence 9998754 455544 45666666543211100 0001111 12344444444332211111
Q ss_pred cccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccccccccccccccccccccccEEEEeeCCCcc
Q 000375 384 LELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLK 463 (1607)
Q Consensus 384 ~~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~p~L~~L~l~~c~~l~ 463 (1607)
..+ ..+++|++|+++++. -...++ .....+++|+.|++.++.-..
T Consensus 278 ~~l---~~l~~L~~L~Ls~n~-----------------------------l~~~~p---~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 278 PSI---FSLQKLISLDLSDNS-----------------------------LSGEIP---ELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred hhH---hhccCcCEEECcCCe-----------------------------eccCCC---hhHcCCCCCcEEECCCCccCC
Confidence 222 444455555554432 111110 112234455555555443222
Q ss_pred cCCChhhhhccccCcEEeeccccccceecccCCccccccccccccCccCeEEecCCCCCccccccCCCCCCCCcccchhh
Q 000375 464 HLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFDLERPLLSPTISATTL 543 (1607)
Q Consensus 464 ~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~ 543 (1607)
.+|. .+..+++|+.|++++|.-...++. ....+++|+.|++.++.--..+|
T Consensus 323 ~~~~--~~~~l~~L~~L~L~~n~l~~~~p~----------~l~~~~~L~~L~Ls~n~l~~~~p----------------- 373 (968)
T PLN00113 323 KIPV--ALTSLPRLQVLQLWSNKFSGEIPK----------NLGKHNNLTVLDLSTNNLTGEIP----------------- 373 (968)
T ss_pred cCCh--hHhcCCCCCEEECcCCCCcCcCCh----------HHhCCCCCcEEECCCCeeEeeCC-----------------
Confidence 2222 344455555555555433222221 11233445555554432111110
Q ss_pred hhhhhcccCCCCccccccccccCCcccccccccccccccccCCcccccccccccceEEEecCCCcccccchhHHHhhccc
Q 000375 544 AFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCSRLKFLFSYSMVDSLVRL 623 (1607)
Q Consensus 544 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 623 (1607)
.....+++|+.|++++|++....+..+. .+++|+.|.+.+|.--..++. .+..+++|
T Consensus 374 ----------------~~~~~~~~L~~L~l~~n~l~~~~p~~~~-----~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L 430 (968)
T PLN00113 374 ----------------EGLCSSGNLFKLILFSNSLEGEIPKSLG-----ACRSLRRVRLQDNSFSGELPS--EFTKLPLV 430 (968)
T ss_pred ----------------hhHhCcCCCCEEECcCCEecccCCHHHh-----CCCCCCEEECcCCEeeeECCh--hHhcCCCC
Confidence 0012234555555555544433222222 245566666655543222221 24556666
Q ss_pred cEEEEecccccccccccCCccccccccCccceeeeccCCCCcccccccccccccccCCCcccccccccCCCcceeeeccc
Q 000375 624 QQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLFDEKLVLPRLEVLSIDMM 703 (1607)
Q Consensus 624 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 703 (1607)
+.|+++++.--.. + +.....+++|+.|.+.+|.-... ++.....++|+.|+++++
T Consensus 431 ~~L~Ls~N~l~~~-~-----~~~~~~l~~L~~L~L~~n~~~~~-------------------~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 431 YFLDISNNNLQGR-I-----NSRKWDMPSLQMLSLARNKFFGG-------------------LPDSFGSKRLENLDLSRN 485 (968)
T ss_pred CEEECcCCcccCc-c-----ChhhccCCCCcEEECcCceeeee-------------------cCcccccccceEEECcCC
Confidence 6666665532111 1 11112345566666655532210 011112356677777664
Q ss_pred cccccccccccCcccCCCccEEEEecCCCcceeccCcHHHHHhcCCccEEEEecCcchHhhhhccCCCCCcccccchhhh
Q 000375 704 DNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCASVEEIIGETSSNGNICVEEEEDEE 783 (1607)
Q Consensus 704 ~~l~~l~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~ 783 (1607)
. +....+..+ ..+++|+.|++++|. +....|.. +..+++|++|++++|.....++...
T Consensus 486 ~-l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~--------------- 543 (968)
T PLN00113 486 Q-FSGAVPRKL--GSLSELMQLKLSENK-LSGEIPDE---LSSCKKLVSLDLSHNQLSGQIPASF--------------- 543 (968)
T ss_pred c-cCCccChhh--hhhhccCEEECcCCc-ceeeCChH---HcCccCCCEEECCCCcccccCChhH---------------
Confidence 3 322222222 336777777777754 33333543 6677777888777765443333221
Q ss_pred hhcccccCccCccccccCCcccccCCCCcccCCCCccEEEEeCCCC
Q 000375 784 ARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLGVFGCDS 829 (1607)
Q Consensus 784 ~~~~~~lp~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 829 (1607)
..+++|+.|+++++.....++.... .+++|+.+++++|+-
T Consensus 544 ----~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l~ls~N~l 583 (968)
T PLN00113 544 ----SEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQVNISHNHL 583 (968)
T ss_pred ----hCcccCCEEECCCCcccccCChhHh--cCcccCEEeccCCcc
Confidence 2366777777777765555554332 466777777777653
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=9.9e-19 Score=238.62 Aligned_cols=342 Identities=20% Similarity=0.257 Sum_probs=265.4
Q ss_pred CCCCcEEEeeCCCCC-------cCCCCC-C-CCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCC
Q 000375 127 HKDPTAISIPFRGIY-------EFPERL-E-CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCL 197 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~-------~~~~~~-~-~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L 197 (1607)
+.+++.+.+..+... .+|... . ..+||.|.+.++.+. .+|..+ .+.+|+.|++.++.+..+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccccC
Confidence 678888888655322 244433 2 357999999988764 678776 6899999999999999999999999
Q ss_pred CCCCEEEccCCC-CCCccccCCCCCCcEEEcccC-CCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEc
Q 000375 198 ISLRTLTLESCL-LGDVATIGDLKKLEILSLRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYM 275 (1607)
Q Consensus 198 ~~Lr~L~L~~~~-l~~l~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l 275 (1607)
++|++|+++++. +..++.++.+++|++|++++| .+.++|..++++++|++|++++|..++.+|.. + ++++|++|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeC
Confidence 999999999876 667788999999999999998 67799999999999999999999889999986 4 8999999999
Q ss_pred cCccCccccccccccChhhcCCCCCCCEEEeecCCCCCCCcccccccCcEeEEEecCccCCCCCCccccccccccccccc
Q 000375 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCI 355 (1607)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~ 355 (1607)
++|... ...+. ..++|+.|++..+.+..+|..+.+.+|+.|.+........... . .
T Consensus 712 sgc~~L-------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~-----------~---~ 767 (1153)
T PLN03210 712 SGCSRL-------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER-----------V---Q 767 (1153)
T ss_pred CCCCCc-------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhcccc-----------c---c
Confidence 988542 11121 2468999999999999998877778888776542110000000 0 0
Q ss_pred cccchhhhhhccccccccccccCccccccccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccccc
Q 000375 356 YLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRL 435 (1607)
Q Consensus 356 ~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l 435 (1607)
.........+++|+.|+++++.........+ +.+++|+.|.+.+|..++.++.. ..+++|++|.+.+|.++
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRL 838 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCcc
Confidence 0011112235789999998876655544455 88999999999999888877532 26899999999999988
Q ss_pred cccccccccccccccccEEEEeeCCCcccCCChhhhhccccCcEEeeccccccceecccCCccccccccccccCccCeEE
Q 000375 436 EMVYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLT 515 (1607)
Q Consensus 436 ~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~ 515 (1607)
..++ ...++|+.|++.+ ..++.+|. .+..+++|+.|++.+|++++.++. ....+++|+.+.
T Consensus 839 ~~~p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~----------~~~~L~~L~~L~ 899 (1153)
T PLN03210 839 RTFP------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL----------NISKLKHLETVD 899 (1153)
T ss_pred cccc------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc----------ccccccCCCeee
Confidence 7763 2357899999988 46788876 678999999999999999998873 234678999999
Q ss_pred ecCCCCCccc
Q 000375 516 LQCLPQLTSS 525 (1607)
Q Consensus 516 l~~~~~L~~~ 525 (1607)
+.+|++|+.+
T Consensus 900 l~~C~~L~~~ 909 (1153)
T PLN03210 900 FSDCGALTEA 909 (1153)
T ss_pred cCCCcccccc
Confidence 9999999877
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.1e-20 Score=208.56 Aligned_cols=388 Identities=19% Similarity=0.192 Sum_probs=251.3
Q ss_pred CCCCcEEEeeCCCCCcCCCC----CCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCE
Q 000375 127 HKDPTAISIPFRGIYEFPER----LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRT 202 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~ 202 (1607)
....+-++.+++.+..+... .-.+..++|++++|.++ .+...+|.++++|+.+.+..|.++.+|...+...||+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 44566677777766643221 13456778999998886 45555668999999999999999999987778888999
Q ss_pred EEccCCCCCCc--cccCCCCCCcEEEcccCCCcccch-hccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCcc
Q 000375 203 LTLESCLLGDV--ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (1607)
Q Consensus 203 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~ 279 (1607)
|+|.+|.|..+ +.+..++.||.|||+.|.|+++|. ++.+-.++++|++++|. ++.+-.+.|..+.+|-+|.++.|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc
Confidence 99999998876 778888999999999999988875 46666789999999988 777877778888899999999888
Q ss_pred CccccccccccChhhcCCCCCCCEEEeecCCCCCCCccc--ccccCcEeEEEecCccCCCCCCccccccccccccccccc
Q 000375 280 TEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYL 357 (1607)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~ 357 (1607)
++ .-.+..+++|++|+.|++..|.+..+.... .+.+|+.+++..+++ .++
T Consensus 209 it-------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I---------------------~kL 260 (873)
T KOG4194|consen 209 IT-------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI---------------------SKL 260 (873)
T ss_pred cc-------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc---------------------ccc
Confidence 85 233566788999999999888765543221 344444444322221 112
Q ss_pred cchhhhhhccccccccccccCccccccccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccccccc
Q 000375 358 GYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEM 437 (1607)
Q Consensus 358 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 437 (1607)
.+|+..-+.++++|+|.......-.-..+ -++..|+.|+++++ .++.|..+ .| .-.++|+.|.+++ +.+.+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~N-aI~rih~d-~W---sftqkL~~LdLs~-N~i~~ 331 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYN-AIQRIHID-SW---SFTQKLKELDLSS-NRITR 331 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchh-hhheeecc-hh---hhcccceeEeccc-ccccc
Confidence 34444446677777775422211111122 57788888888876 45554221 22 2356788888876 45555
Q ss_pred cccccccccccccccEEEEeeCCCcccCCChhhhhccccCcEEeeccccccceecccCCccccccccccccCccCeEEec
Q 000375 438 VYRGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQ 517 (1607)
Q Consensus 438 ~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~ 517 (1607)
+..+. ...+..|++|.++. +++.++.. ..+..+.+|++|++++.. +.-.+. + .......+++|+.|.+.
T Consensus 332 l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~-ls~~IE-----D-aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 332 LDEGS--FRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNE-LSWCIE-----D-AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred CChhH--HHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCe-EEEEEe-----c-chhhhccchhhhheeec
Confidence 53322 23467777777777 35555544 355677888888887642 211110 1 11123346777777777
Q ss_pred CCCCCccccccCCCCCCCCcccchhhhhhhhcccCCCCccccccccccCCcccccccccccccccccCCccccccccccc
Q 000375 518 CLPQLTSSGFDLERPLLSPTISATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNL 597 (1607)
Q Consensus 518 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L 597 (1607)
+ .++++++ +. ....+++|+.|++.+|.+..+.+..+.. + +|
T Consensus 401 g-Nqlk~I~----------kr----------------------Afsgl~~LE~LdL~~NaiaSIq~nAFe~-----m-~L 441 (873)
T KOG4194|consen 401 G-NQLKSIP----------KR----------------------AFSGLEALEHLDLGDNAIASIQPNAFEP-----M-EL 441 (873)
T ss_pred C-ceeeecc----------hh----------------------hhccCcccceecCCCCcceeeccccccc-----c-hh
Confidence 6 3566651 00 1345677777777777777666665543 3 66
Q ss_pred ceEEEe
Q 000375 598 TNLTVE 603 (1607)
Q Consensus 598 ~~L~i~ 603 (1607)
++|.+.
T Consensus 442 k~Lv~n 447 (873)
T KOG4194|consen 442 KELVMN 447 (873)
T ss_pred hhhhhc
Confidence 666553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.8e-20 Score=211.07 Aligned_cols=284 Identities=18% Similarity=0.256 Sum_probs=139.3
Q ss_pred cEEEecCCCCCC-CCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCCcEEEcccC
Q 000375 153 KLFVLFSENLSL-RIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV-ATIGDLKKLEILSLRHS 230 (1607)
Q Consensus 153 r~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~ 230 (1607)
|-.++++|+++| .+|.++ ..|..++.|.|..+.+..+|+.++.+.+|..|.+++|++..+ ..+..|+.||.+.++.|
T Consensus 10 rGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 333444444442 344444 455555555555555555555555555555555555554433 44455555555555555
Q ss_pred CCc--ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccCh-hhcCCCCCCCEEEee
Q 000375 231 DVE--ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASL-VELKQLSRLTTLEVH 307 (1607)
Q Consensus 231 ~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~ 307 (1607)
+++ .+|..|.+|..|.+||+++|+ +++.|.+ +..-+++-.|++++|+|. ..+ .-+.+|+.|-.|+++
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie--------tIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE--------TIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc--------cCCchHHHhhHhHhhhccc
Confidence 444 455555555555555555555 5555554 455555555555555442 112 122344445555555
Q ss_pred cCCCCCCCccc-ccccCcEeEEEecCccCCCCCCccccccccccccccccccchhhhhhccccccccccccCcc-ccccc
Q 000375 308 IPDAQVMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGIEDLYLDELNGFQ-NALLE 385 (1607)
Q Consensus 308 ~~~~~~~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~l~~ 385 (1607)
.|+++.+|..+ .+.+|+.|.++.+. +....|..+. .+++|+.|++++..... +..+.
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NP----------L~hfQLrQLP-----------smtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNP----------LNHFQLRQLP-----------SMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCCh----------hhHHHHhcCc-----------cchhhhhhhcccccchhhcCCCc
Confidence 55555555443 34444444332111 0000111000 13445555555544322 23333
Q ss_pred cccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccccccccccccccccccccccEEEEeeCCCcccC
Q 000375 386 LEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSFSKLRIIKVCQCDNLKHL 465 (1607)
Q Consensus 386 l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~p~L~~L~l~~c~~l~~l 465 (1607)
+ ..+.+|..++++.+ ++..++++ ...+++|+.|.+++ ++++++ ....+.-.+|+.|+++. +.++.+
T Consensus 218 l---d~l~NL~dvDlS~N-~Lp~vPec-----ly~l~~LrrLNLS~-N~iteL---~~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 218 L---DDLHNLRDVDLSEN-NLPIVPEC-----LYKLRNLRRLNLSG-NKITEL---NMTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred h---hhhhhhhhcccccc-CCCcchHH-----HhhhhhhheeccCc-Cceeee---eccHHHHhhhhhhcccc-chhccc
Confidence 4 66677777777654 33333322 33456666666665 334433 23344556777777777 466777
Q ss_pred CChhhhhccccCcEEeecc
Q 000375 466 FSFPMARNLLQLQKLKVSF 484 (1607)
Q Consensus 466 p~~~~~~~L~~L~~L~l~~ 484 (1607)
|. .+..++.|+.|.+.+
T Consensus 284 P~--avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 284 PD--AVCKLTKLTKLYANN 300 (1255)
T ss_pred hH--HHhhhHHHHHHHhcc
Confidence 65 556666666666544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=7.7e-19 Score=199.12 Aligned_cols=337 Identities=16% Similarity=0.190 Sum_probs=158.3
Q ss_pred CCCCcEEEeeCCCCCcCCC--CCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCC-cccCCCCCCCEE
Q 000375 127 HKDPTAISIPFRGIYEFPE--RLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTL 203 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L 203 (1607)
+...+.|++++|.+.++.. ..++++|+.+.+..|.+. .+|... ....+|..|+|.+|.|+.+- +.+..+..||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3444555555555543321 234555555555544443 333321 23334444444444444332 234444444444
Q ss_pred EccCCCCCCc--cccCCCCCCcEEEcccCCCcccch-hccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccC
Q 000375 204 TLESCLLGDV--ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (1607)
Q Consensus 204 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~ 280 (1607)
||+.|.|..+ +++..=.++++|+|++|+|+.+-. .|..+.+|.+|.++.|+ +..+|...|.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 4444444432 344444444444444444444322 24444444444444444 4444444344444444444444433
Q ss_pred ccccccccccChhhcCCCCCCCEEEeecCCCCCCCccc--ccccCcEeEEEecCcc----CCCCCCcccccccccccc-c
Q 000375 281 EWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGDVW----SWSGEHETSRRLKLSALN-K 353 (1607)
Q Consensus 281 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~l~-~ 353 (1607)
. .-....+..|++|+.|.+..|++..+.+.+ .+.+++.+++..+... .|.-+...++.|+++.-. .
T Consensus 234 r-------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 234 R-------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred e-------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 2 000122334444444444444444444333 3444444444332211 122222233333333111 0
Q ss_pred cccccchhhhhhccccccccccccCccccccccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeeccccc
Q 000375 354 CIYLGYGMQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLM 433 (1607)
Q Consensus 354 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~ 433 (1607)
.++...| .+.++|+.|+|+.....+-....| ..+..|+.|.|+.+ .+.++.+ ....++.+|++|++++.
T Consensus 307 rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e----~af~~lssL~~LdLr~N- 375 (873)
T KOG4194|consen 307 RIHIDSW--SFTQKLKELDLSSNRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAE----GAFVGLSSLHKLDLRSN- 375 (873)
T ss_pred eeecchh--hhcccceeEeccccccccCChhHH---HHHHHhhhhccccc-chHHHHh----hHHHHhhhhhhhcCcCC-
Confidence 1111111 235777778777543321112223 56677888888776 3433311 13456677888877752
Q ss_pred ccccccc-ccccccccccccEEEEeeCCCcccCCChhhhhccccCcEEeecccc
Q 000375 434 RLEMVYR-GQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCE 486 (1607)
Q Consensus 434 ~l~~~~~-~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~~~L~~L~~L~l~~c~ 486 (1607)
.+....+ +......+|.|++|.+.+ ++++.+|. ..+.++++|++|++.+..
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 2222111 111123488899999888 57888876 467888999999988754
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2.8e-20 Score=211.05 Aligned_cols=319 Identities=20% Similarity=0.223 Sum_probs=234.4
Q ss_pred CCCCcEEEeeCCCCCcCCCC-CCCCCccEEEecCCCCC-CCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEE
Q 000375 127 HKDPTAISIPFRGIYEFPER-LECPKLKLFVLFSENLS-LRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLT 204 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~ 204 (1607)
+.++.||++.+|++..+... ..++.||++.+..|++. ..+|+++| +++.|.+|||++|++++.|..+.+-+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 57889999999988866544 48999999999998864 35888885 79999999999999999999999999999999
Q ss_pred ccCCCCCCc--cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccC-ccccCCCCCCcEEEccCccCc
Q 000375 205 LESCLLGDV--ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIR-PNVISSLSRLEELYMGNSFTE 281 (1607)
Q Consensus 205 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~~i~~L~~L~~L~l~~~~~~ 281 (1607)
|++|+|..+ +-+-+|..|-+|||++|++..+|+++.+|.+|++|++++|. +.... .. +..|++|++|.+++..-+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cccchhhhhhhcccccch
Confidence 999999965 56779999999999999999999999999999999999987 32221 12 446788899998887554
Q ss_pred cccccccccChhhcCCCCCCCEEEeecCCCCCCCccc-ccccCcEeEEEecCccCCCCCCccccccccccccccccccch
Q 000375 282 WEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYG 360 (1607)
Q Consensus 282 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~ 360 (1607)
....+..+..|.||+.++++.|++..+|+-+ .+.+|+.|+++.+.+.+ ++.+..
T Consensus 211 ------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite---------------L~~~~~---- 265 (1255)
T KOG0444|consen 211 ------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE---------------LNMTEG---- 265 (1255)
T ss_pred ------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee---------------eeccHH----
Confidence 3456778888999999999999999999876 78888888876544221 111110
Q ss_pred hhhhhccccccccccccCccccccccccCCCCCCccEEEeecccc-ceEEecccCcccCCcccccceeeccccccccccc
Q 000375 361 MQMLLKGIEDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCE-ILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVY 439 (1607)
Q Consensus 361 ~~~~l~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~L~~~~~-l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~ 439 (1607)
.-.++++|.++..... .+|.- +..++.|+.|.+.++.- .+-|+ .+.+.+.+|+.++..+ ++++.++
T Consensus 266 ---~W~~lEtLNlSrNQLt--~LP~a--vcKL~kL~kLy~n~NkL~FeGiP-----SGIGKL~~Levf~aan-N~LElVP 332 (1255)
T KOG0444|consen 266 ---EWENLETLNLSRNQLT--VLPDA--VCKLTKLTKLYANNNKLTFEGIP-----SGIGKLIQLEVFHAAN-NKLELVP 332 (1255)
T ss_pred ---HHhhhhhhccccchhc--cchHH--HhhhHHHHHHHhccCcccccCCc-----cchhhhhhhHHHHhhc-cccccCc
Confidence 1145666666653332 22321 25667777777665421 11111 1345566666666665 5566554
Q ss_pred cccccccccccccEEEEeeCCCcccCCChhhhhccccCcEEeeccccccceec
Q 000375 440 RGQLTEHSFSKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIV 492 (1607)
Q Consensus 440 ~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~ 492 (1607)
. ...-.++|+.|.+.. +++..+|. .+.-++.|+.|++.+.+++.--|
T Consensus 333 E---glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 333 E---GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred h---hhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCC
Confidence 3 234578888888865 67777876 67788888899988888876544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.3e-20 Score=204.49 Aligned_cols=177 Identities=27% Similarity=0.394 Sum_probs=111.8
Q ss_pred CCCCcEEEeeCCCCCcCCCCC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEc
Q 000375 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 205 (1607)
...+..+.+++|.+..+.+.. ++..+.+|.++.|... ..|+++ +.+..+..++.++|.+..+|..++.+..|+.|+.
T Consensus 44 qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 445666777777666554433 5666666666666654 455555 5666666666666666666666666666666666
Q ss_pred cCCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcccc
Q 000375 206 ESCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (1607)
Q Consensus 206 ~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 284 (1607)
++|.+..+ ++|+.+..|+.|+..+|++.++|.+++.+.+|..|++.+|+ ++.+|+..+ +++.|++|+...|-+.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh---
Confidence 66665543 66666666666666666666666666666666666666666 566666533 3666666665554442
Q ss_pred ccccccChhhcCCCCCCCEEEeecCCCCCCC
Q 000375 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (1607)
Q Consensus 285 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 315 (1607)
..|.+++.|..|..|+++.|++..+|
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccccCC
Confidence 45666666666666666666555554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=7.8e-19 Score=210.56 Aligned_cols=500 Identities=21% Similarity=0.230 Sum_probs=259.1
Q ss_pred EEeeCCCCCcCCCCC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCC
Q 000375 133 ISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG 211 (1607)
Q Consensus 133 L~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~ 211 (1607)
++.+....+.+|... ....+..|++..|.+. ..|-.+..+.-+|++||+++|.+...|..++.+.+|+.|+++.|.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 344444444455433 2333666666666543 33444444444588888888888888888888888888888888877
Q ss_pred Cc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcccccccccc
Q 000375 212 DV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNA 290 (1607)
Q Consensus 212 ~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 290 (1607)
.. .+++++.+|++|.|.+|.+..+|.++..+++|++|+++.|. +..+|.- +..++.+..+..++| ..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~--------- 149 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK--------- 149 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh---------
Confidence 43 77788888888888888888888888888888888888877 6677765 677777777777666 21
Q ss_pred ChhhcCCCCCCCEEEeecCCC-CCCCcccccccCcE-eEEEecCccCCCCCCccccccccccccccccccchhhhhhccc
Q 000375 291 SLVELKQLSRLTTLEVHIPDA-QVMPQDLLSVELER-YRICIGDVWSWSGEHETSRRLKLSALNKCIYLGYGMQMLLKGI 368 (1607)
Q Consensus 291 ~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~-L~i~~~~~~~~~~~~~~l~~l~L~~l~~~~~~~~~~~~~l~~L 368 (1607)
...++... ++.+++..+.+ ..++.++ .+++. ++++.+..- .+++. -+.+|
T Consensus 150 -~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~~----------~~dls--------------~~~~l 201 (1081)
T KOG0618|consen 150 -IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEME----------VLDLS--------------NLANL 201 (1081)
T ss_pred -hhhhcccc-chhhhhhhhhcccchhcch--hhhheeeecccchhh----------hhhhh--------------hccch
Confidence 11222222 44444443331 1222221 11111 222111100 00000 01222
Q ss_pred cccccccccCccccccccccCCCCCCccEEEeeccccceEEecccCcccCCcccccceeecccccccccccccccccccc
Q 000375 369 EDLYLDELNGFQNALLELEDGEVFPLLKHLHVQNVCEILYIVNLVGWEHCNAFPLLESLFLHNLMRLEMVYRGQLTEHSF 448 (1607)
Q Consensus 369 ~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~ 448 (1607)
+.|+.... .+..+ ...-++|+.|+.+.++-.+.. ....-.+|+++.++. +++..++ ...+..
T Consensus 202 ~~l~c~rn-----~ls~l--~~~g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis~-n~l~~lp---~wi~~~ 263 (1081)
T KOG0618|consen 202 EVLHCERN-----QLSEL--EISGPSLTALYADHNPLTTLD-------VHPVPLNLQYLDISH-NNLSNLP---EWIGAC 263 (1081)
T ss_pred hhhhhhhc-----ccceE--EecCcchheeeeccCcceeec-------cccccccceeeecch-hhhhcch---HHHHhc
Confidence 22222110 01111 012344555555554322110 111223455555543 2222221 113445
Q ss_pred ccccEEEEeeCCCcccCCChhhhhccccCcEEeeccccccceecccCCccccccccccccCccCeEEecCCCCCcccccc
Q 000375 449 SKLRIIKVCQCDNLKHLFSFPMARNLLQLQKLKVSFCESLKLIVGKESSETHNVHEIINFTQLHSLTLQCLPQLTSSGFD 528 (1607)
Q Consensus 449 p~L~~L~l~~c~~l~~lp~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 528 (1607)
++|+.+++.. ..+..+|. .+..+++|+.+.+..| .++.++. ....+.+|++|++... +|..+|.
T Consensus 264 ~nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~n-el~yip~----------~le~~~sL~tLdL~~N-~L~~lp~- 327 (1081)
T KOG0618|consen 264 ANLEALNANH-NRLVALPL--RISRITSLVSLSAAYN-ELEYIPP----------FLEGLKSLRTLDLQSN-NLPSLPD- 327 (1081)
T ss_pred ccceEecccc-hhHHhhHH--HHhhhhhHHHHHhhhh-hhhhCCC----------cccccceeeeeeehhc-cccccch-
Confidence 5555555554 23344432 2334445555555443 2333332 1123455555555532 3333310
Q ss_pred CCCCCCCCcc--cchhhhhhhhcccCCCCccccccccccCCcccccccccccccccccCCcccccccccccceEEEecCC
Q 000375 529 LERPLLSPTI--SATTLAFEEVIAEDDSDESLFNNKVIFPNLEKLKLSSINIEKIWHDQYPLMLNSCSQNLTNLTVETCS 606 (1607)
Q Consensus 529 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~ 606 (1607)
... ..+.. ....+.+..+. +.. .-....++.|+.|.+.+|.++.-.-..+ .++.+|+.|++++.
T Consensus 328 -~~l-~v~~~~l~~ln~s~n~l~----~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l-----~~~~hLKVLhLsyN- 393 (1081)
T KOG0618|consen 328 -NFL-AVLNASLNTLNVSSNKLS----TLP--SYEENNHAALQELYLANNHLTDSCFPVL-----VNFKHLKVLHLSYN- 393 (1081)
T ss_pred -HHH-hhhhHHHHHHhhhhcccc----ccc--cccchhhHHHHHHHHhcCcccccchhhh-----ccccceeeeeeccc-
Confidence 000 00000 00000000000 000 0012456789999999997664322222 24789999999884
Q ss_pred CcccccchhHHHhhccccEEEEecccccccccccCCccccccccCccceeeeccCCCCcccccccccccccccCCCcccc
Q 000375 607 RLKFLFSYSMVDSLVRLQQLEIRKCESMEAVIDTTDIEINSVEFPSLHHLRIVDCPNLRSFISVNSSEEKILHTDTQPLF 686 (1607)
Q Consensus 607 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~ 686 (1607)
.+.+ ||.+.+..+..|++|++++. +|+.+. ......+.|+.|.. +.+.+..|
T Consensus 394 rL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp------~tva~~~~L~tL~a--------------------hsN~l~~f 445 (1081)
T KOG0618|consen 394 RLNS-FPASKLRKLEELEELNLSGN-KLTTLP------DTVANLGRLHTLRA--------------------HSNQLLSF 445 (1081)
T ss_pred cccc-CCHHHHhchHHhHHHhcccc-hhhhhh------HHHHhhhhhHHHhh--------------------cCCceeec
Confidence 4555 57778889999999999994 565542 11223445555543 23566677
Q ss_pred cccccCCCcceeeeccccccccccccccCcccCCCccEEEEecCCCcceeccCcHHHHHhcCCccEEEEe
Q 000375 687 DEKLVLPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVD 756 (1607)
Q Consensus 687 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~~~~~~l~~L~~L~i~ 756 (1607)
|+...++.|+.++++ |++|..+.-.... . -++||+|++++..++. |... .+..+.++..+++.
T Consensus 446 Pe~~~l~qL~~lDlS-~N~L~~~~l~~~~-p-~p~LkyLdlSGN~~l~--~d~~--~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLS-CNNLSEVTLPEAL-P-SPNLKYLDLSGNTRLV--FDHK--TLKVLKSLSQMDIT 508 (1081)
T ss_pred hhhhhcCcceEEecc-cchhhhhhhhhhC-C-CcccceeeccCCcccc--cchh--hhHHhhhhhheecc
Confidence 777788999999998 6777765322111 1 1799999999887654 3444 45555555555553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=8.8e-20 Score=198.11 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=109.3
Q ss_pred CCCcEEEeeCCCCCcCCCCC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEcc
Q 000375 128 KDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (1607)
Q Consensus 128 ~~lr~L~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~ 206 (1607)
..+..+.+++|...++|+.+ ++..+..++++.|.++ .+|..+ .....|+.|+.++|.+..+|++|+.+..|..|+..
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 34555666666666655544 5555666666666554 455555 45566666666666666666666666666666666
Q ss_pred CCCCCC-ccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccc
Q 000375 207 SCLLGD-VATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (1607)
Q Consensus 207 ~~~l~~-l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 285 (1607)
+|.+.. +++++.+..|-.|++.+|+++++|+..-+++.|++||...|- ++.+|++ ++.|.+|..|++..|.+..-.+
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccccCCC
Confidence 666553 355566666666666666666655554445666666655554 5556655 5666666666655555431000
Q ss_pred ------------cc--cccChhh-cCCCCCCCEEEeecCCCCCCCccc-ccccCcEeEEE
Q 000375 286 ------------GQ--SNASLVE-LKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRIC 329 (1607)
Q Consensus 286 ------------~~--~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~ 329 (1607)
|. ..-.+++ +++++++..|+++.|++.++|.++ .+.+|++|+++
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 00 0012222 335566666666666666666554 44445555444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-17 Score=199.83 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=73.7
Q ss_pred ccCCCcceeeecccccccc-ccccccCcccCCCccEEEEecCCCcceeccCcHHHHHhcCCccEEEEecCcchHhhhhcc
Q 000375 690 LVLPRLEVLSIDMMDNMRK-IWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCASVEEIIGET 768 (1607)
Q Consensus 690 ~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~ 768 (1607)
..++.|+.|++.+- .+.. .|+. ..++.+||.|++.+ +++.+ ||.+ .+..+..||+|+++| +.++.++...
T Consensus 356 ~~~~~Lq~LylanN-~Ltd~c~p~---l~~~~hLKVLhLsy-NrL~~-fpas--~~~kle~LeeL~LSG-NkL~~Lp~tv 426 (1081)
T KOG0618|consen 356 NNHAALQELYLANN-HLTDSCFPV---LVNFKHLKVLHLSY-NRLNS-FPAS--KLRKLEELEELNLSG-NKLTTLPDTV 426 (1081)
T ss_pred hhhHHHHHHHHhcC-cccccchhh---hccccceeeeeecc-ccccc-CCHH--HHhchHHhHHHhccc-chhhhhhHHH
Confidence 34567777777652 2322 2221 24579999999998 66766 5988 899999999999999 6787776433
Q ss_pred CCCCCcccccchhhhhhcccccCccCccccccCCcccccCCCCcccCCCCccEEEEeCCCCcc
Q 000375 769 SSNGNICVEEEEDEEARRRFVFPRLTWLNLSLLPRLKSFCPGVDISEWPLLKSLGVFGCDSVE 831 (1607)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~lp~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~ 831 (1607)
-.+++|+.|...+.. +..+|... .++.|+.++++ |.+|+
T Consensus 427 -------------------a~~~~L~tL~ahsN~-l~~fPe~~---~l~qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 427 -------------------ANLGRLHTLRAHSNQ-LLSFPELA---QLPQLKVLDLS-CNNLS 465 (1081)
T ss_pred -------------------HhhhhhHHHhhcCCc-eeechhhh---hcCcceEEecc-cchhh
Confidence 236677777765543 55666433 67888888886 44443
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-16 Score=152.45 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=131.9
Q ss_pred cCCCCCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCC-CccccCCCC
Q 000375 142 EFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLK 220 (1607)
Q Consensus 142 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~-~l~~i~~L~ 220 (1607)
+++...+++++..|.+++|.++ .+|+.+ ..+++|.+|++.+|+++++|.+++.++.||.|++.-|++. .+.+||.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 4455556677777777777765 566665 7888888888888888888888888888888888888876 458888888
Q ss_pred CCcEEEcccCCCc--ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCC
Q 000375 221 KLEILSLRHSDVE--ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQL 298 (1607)
Q Consensus 221 ~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 298 (1607)
-|++||+.+|++. .+|..|..++.|+.|++++|. +..+|++ ++++++||.|.+.+|.+. ..+.+++.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig~l 172 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIGDL 172 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------hCcHHHHHH
Confidence 8888888888777 688888888888888888887 7778887 888888888888877653 567888888
Q ss_pred CCCCEEEeecCCCCCCCccc
Q 000375 299 SRLTTLEVHIPDAQVMPQDL 318 (1607)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~ 318 (1607)
+.|+.|++.+|++..+|.++
T Consensus 173 t~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHhcccceeeecChhh
Confidence 88888888888888887664
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-15 Score=146.28 Aligned_cols=160 Identities=25% Similarity=0.362 Sum_probs=144.7
Q ss_pred CCCCcEEEeeCCCCCcCCCCC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEc
Q 000375 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 205 (1607)
...++++.+++|++..+|+.+ ++.+|+.|++++|.+. ++|.++ +.+++||.|++.-|.+..+|..|+.++.|++||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 578999999999999888776 9999999999999986 788887 8999999999999999999999999999999999
Q ss_pred cCCCCC---CccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcc
Q 000375 206 ESCLLG---DVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEW 282 (1607)
Q Consensus 206 ~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~ 282 (1607)
.+|++. .+..|-.+..|+.|.++.|.+.-+|.++++|++||.|.+++|. +-++|.+ ++.++.|++|++.+|.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee-
Confidence 999987 2477888899999999999999999999999999999999998 7789998 999999999999999875
Q ss_pred ccccccccChhhcCCC
Q 000375 283 EIEGQSNASLVELKQL 298 (1607)
Q Consensus 283 ~~~~~~~~~~~~l~~l 298 (1607)
-.+.+++++
T Consensus 187 -------vlppel~~l 195 (264)
T KOG0617|consen 187 -------VLPPELANL 195 (264)
T ss_pred -------ecChhhhhh
Confidence 345566544
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=1.3e-15 Score=167.85 Aligned_cols=301 Identities=19% Similarity=0.162 Sum_probs=194.4
Q ss_pred CccEEEEeccCCCCCCCCchhHhhcCCCcEEEEEecccceeEeeccccCCCCcccccccccceeeccCCcCceEeecCCC
Q 000375 1082 NLRWLVVDDCRFMSGAIPANQLQNLINLKTLEVRNCYFLEQVFHLEEQNPIGQFRSLFPKLRNLKLINLPQLIRFCNFTG 1161 (1607)
Q Consensus 1082 ~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~ 1161 (1607)
.|++|.++||....+-..-....+|+++++|.+.+|..+++.. .-.....|+.|+.|.+..|+++++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s-------~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS-------LLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH-------HHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 4666666666666544444445666777777777777665542 111445677777777777777666533321
Q ss_pred ccccCCCcceEEEeeCCCceeeecCCcccccCCCCCCcccccccccccccCcccccccccCCcccccccccccccccccc
Q 000375 1162 RIIELPSLVNLWIENCRNMKTFISSSTPVIIAPNKEPQQMTSQENLLADIQPLFDEKVKLPSLEVLGISQMDNLRKIWQD 1241 (1607)
Q Consensus 1162 ~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~L~~l~~~~~l~~l~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~~~~~ 1241 (1607)
...|++|++++++.|+.++.- + + + .-...+..++.+...||..+..-...
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~---g----v---~-------------------~~~rG~~~l~~~~~kGC~e~~le~l~ 261 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGN---G----V---Q-------------------ALQRGCKELEKLSLKGCLELELEALL 261 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcC---c----c---h-------------------HHhccchhhhhhhhcccccccHHHHH
Confidence 334788888888888777631 0 0 0 11123344566666677654322111
Q ss_pred CccccccccccEEEeecccCcccccchhHHhhcccccEEEEeccccceEeeeccccccCCccchhhhhcccCCCcccCCc
Q 000375 1242 RLSLDSFCKLNCLVIQRCKKLLSIFPWNMLQRLQKLEKLEVVYCESVQRISELRALNYGDARAISVAQLRETLPICVFPL 1321 (1607)
Q Consensus 1242 ~~~l~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~C~~l~~l~~l~~l~~~~~~~~~l~~l~~~~~l~~l~~ 1321 (1607)
..-.+++-+.++++..|..+++.....+...+..||+|..++|..+.+.+- ..| ..++++
T Consensus 262 -~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--------------~aL-----g~~~~~ 321 (483)
T KOG4341|consen 262 -KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL--------------WAL-----GQHCHN 321 (483)
T ss_pred -HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH--------------HHH-----hcCCCc
Confidence 012445667777888898888875556666788899999999987543321 111 246789
Q ss_pred ccEEEcCCCCCcccccCCccccCCCceeEEEeeCCcchhhhhhhhcccCCccccCCCCCCCcccccccccccCCCcceEE
Q 000375 1322 LTSLKLRSLPRLKCFYPGVHISEWPMLKYLDISGCAELEILASKFLSLGETHVDGQHDSQTQQPFFSFDKVAFPSLKELR 1401 (1607)
Q Consensus 1322 L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 1401 (1607)
|+.|.++.|..+++.+.......|+.|+.+++.+|.-..+-.- .+.... ++.|+.|.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL----------------------~sls~~-C~~lr~ls 378 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL----------------------ASLSRN-CPRLRVLS 378 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH----------------------hhhccC-CchhccCC
Confidence 9999999999998888777788899999999998876554321 111222 38889999
Q ss_pred ccCCCCcceEeecCCCCccccccccccceecCCCCcCCCCcCEEEEecCCCcccccchHhhhhccCccEEEEcccccc
Q 000375 1402 LSRLPKLFWLCKETSHPRNVFQNECSKLDILVPSSVSFGNLSTLEVSKCGRLMNLMTISTAERLVNLERMNVTDCKMI 1479 (1607)
Q Consensus 1402 L~~c~~l~~~~~~~~~~~~~l~~~c~~l~~l~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 1479 (1607)
|+.|..++.-++.... .+......|..+++++|+.+++. .......|++||++++.+|..+
T Consensus 379 lshce~itD~gi~~l~----------------~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLS----------------SSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhhhhhhhh----------------hccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhh
Confidence 9888877765433222 12234568888999999988887 3445668889999999999764
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=3.5e-15 Score=164.66 Aligned_cols=252 Identities=16% Similarity=0.161 Sum_probs=169.9
Q ss_pred ccCCccccccccccccccccccCccccccccccEEEeecccCcccccchhHHhhcccccEEEEeccccceEeeecccccc
Q 000375 1220 KLPSLEVLGISQMDNLRKIWQDRLSLDSFCKLNCLVIQRCKKLLSIFPWNMLQRLQKLEKLEVVYCESVQRISELRALNY 1299 (1607)
Q Consensus 1220 ~l~~L~~L~l~~c~~L~~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~C~~l~~l~~l~~l~~ 1299 (1607)
.++.|++|++..|.++++.... .....|++|++|+++.|+.+..-......+++..++.+...||...+.= .+.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk-~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l~- 261 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLK-YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----ALL- 261 (483)
T ss_pred hcchhhhhhhcccchhHHHHHH-HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HHH-
Confidence 3455555555555555443211 0124467777777777776665433445566667777777777544210 000
Q ss_pred CCccchhhhhcccCCCcccCCcccEEEcCCCCCcccccCCccccCCCceeEEEeeCCcchhhhhhhhcccCCccccCCCC
Q 000375 1300 GDARAISVAQLRETLPICVFPLLTSLKLRSLPRLKCFYPGVHISEWPMLKYLDISGCAELEILASKFLSLGETHVDGQHD 1379 (1607)
Q Consensus 1300 ~~~~~~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~ 1379 (1607)
..-.+++-+..+++.+|..+++.........|..|+.|..++|.++.+.+....+
T Consensus 262 --------------~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----------- 316 (483)
T KOG4341|consen 262 --------------KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----------- 316 (483)
T ss_pred --------------HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-----------
Confidence 0013556677788888888888876666666788899999999887766533222
Q ss_pred CCCcccccccccccCCCcceEEccCCCCcceEeecCCCCccccccccccceecCCCCcCCCCcCEEEEecCCCcccccch
Q 000375 1380 SQTQQPFFSFDKVAFPSLKELRLSRLPKLFWLCKETSHPRNVFQNECSKLDILVPSSVSFGNLSTLEVSKCGRLMNLMTI 1459 (1607)
Q Consensus 1380 ~~~~~~l~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~l~~~c~~l~~l~~~~~~~~~L~~L~l~~C~~L~~l~~~ 1459 (1607)
+.. ++|+.|.+.+|..+........+ .+++.|+.+++.+|...++....
T Consensus 317 -----------~~~-~~L~~l~l~~c~~fsd~~ft~l~-------------------rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 317 -----------QHC-HNLQVLELSGCQQFSDRGFTMLG-------------------RNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred -----------cCC-CceEEEeccccchhhhhhhhhhh-------------------cCChhhhhhcccccceehhhhHh
Confidence 222 78999999999887665433322 67899999999999999998778
Q ss_pred HhhhhccCccEEEEcccccccccccccccc--cccccccCccCEEecccCCCcceeeCCCccccCCCccEEeeccCcccc
Q 000375 1460 STAERLVNLERMNVTDCKMIQQIIQQVGEV--EKDCIVFSQLKYLGLHCLPSLKSFCMGNKALEFPCLEQVIVEECPKMK 1537 (1607)
Q Consensus 1460 ~~~~~l~~L~~L~i~~C~~l~eii~~~~~~--~~~~~~~~~L~~L~L~~lp~L~~~~~~~~~~~~psLe~l~v~~C~~l~ 1537 (1607)
+.+.+|+.|+.+.++.|+.+.+ ++-. +........|..++|.++|.++.--.. +.-.|+.||.++..+|....
T Consensus 366 sls~~C~~lr~lslshce~itD----~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITD----EGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhccCCchhccCChhhhhhhhh----hhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence 8899999999999999987532 2101 112234567899999999988765433 24579999999999999887
Q ss_pred c
Q 000375 1538 I 1538 (1607)
Q Consensus 1538 ~ 1538 (1607)
+
T Consensus 441 k 441 (483)
T KOG4341|consen 441 K 441 (483)
T ss_pred h
Confidence 6
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=2.9e-11 Score=152.57 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=89.6
Q ss_pred CcEEEeeCCCCCcCCCCCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCC
Q 000375 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCL 209 (1607)
Q Consensus 130 lr~L~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 209 (1607)
-..|+++.+.++.+|.... ++|+.|.+.+|.+. .+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4456666666666665442 36677777766665 3443 246677777777777666642 3466667777766
Q ss_pred CCCccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccc
Q 000375 210 LGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSN 289 (1607)
Q Consensus 210 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 289 (1607)
+..++. -..+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. . .+|+.|++++|.+.
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~-------- 335 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLT-------- 335 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccc--------
Confidence 654422 124566677777776666652 3566777777665 5555542 2 24555666666553
Q ss_pred cChhhcCCCCCCCEEEeecCCCCCCC
Q 000375 290 ASLVELKQLSRLTTLEVHIPDAQVMP 315 (1607)
Q Consensus 290 ~~~~~l~~l~~L~~L~l~~~~~~~~~ 315 (1607)
..+. + ..+|+.|+++.|.+..+|
T Consensus 336 ~LP~-l--p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 336 SLPT-L--PSGLQELSVSDNQLASLP 358 (788)
T ss_pred cccc-c--ccccceEecCCCccCCCC
Confidence 1111 1 135666666666655554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=5.3e-10 Score=141.25 Aligned_cols=171 Identities=20% Similarity=0.148 Sum_probs=130.5
Q ss_pred CCCCcEEEeeCCCCCcCCCCCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEcc
Q 000375 127 HKDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~ 206 (1607)
..+++.|.+.+|.++.+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.++.+|... ..|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 46789999999999998864 689999999999887 5664 3578999999999998888643 568899999
Q ss_pred CCCCCCccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcccccc
Q 000375 207 SCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (1607)
Q Consensus 207 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 286 (1607)
+|.++.++. .+++|++|++++|+++.+|... .+|+.|++++|. +..+|.. ..+|++|++++|.+.
T Consensus 291 ~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS~N~Ls----- 355 (788)
T PRK15387 291 GNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQELSVSDNQLA----- 355 (788)
T ss_pred CCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccceEecCCCccC-----
Confidence 999886643 2578999999999999888633 457788888887 7777752 257899999999885
Q ss_pred ccccChhhcCCCCCCCEEEeecCCCCCCCcccccccCcEeEEEe
Q 000375 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRICI 330 (1607)
Q Consensus 287 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 330 (1607)
..+. + ..+|+.|+++.|.+..+|.. ..+|+.|++..
T Consensus 356 ---~LP~-l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~ 391 (788)
T PRK15387 356 ---SLPT-L--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSG 391 (788)
T ss_pred ---CCCC-C--CcccceehhhccccccCccc--ccccceEEecC
Confidence 1121 1 24677788888887777753 24677776653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=2.5e-10 Score=145.43 Aligned_cols=176 Identities=17% Similarity=0.305 Sum_probs=110.7
Q ss_pred CCCcEEEeeCCCCCcCCCCCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccC
Q 000375 128 KDPTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLES 207 (1607)
Q Consensus 128 ~~lr~L~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~ 207 (1607)
++...+.+.++.++.+|... .++++.|++.+|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34566777777777666543 246777777777765 5666542 467777777777777776553 3677777777
Q ss_pred CCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcccccc
Q 000375 208 CLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEG 286 (1607)
Q Consensus 208 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 286 (1607)
|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. +. .+|+.|++++|.+.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt----- 317 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT----- 317 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc-----
Confidence 776654 3332 467777777777777776554 467777777776 6666654 32 35677777776664
Q ss_pred ccccChhhcCCCCCCCEEEeecCCCCCCCcccccccCcEeEEE
Q 000375 287 QSNASLVELKQLSRLTTLEVHIPDAQVMPQDLLSVELERYRIC 329 (1607)
Q Consensus 287 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 329 (1607)
..+..+ .++|+.|+++.|.+..+|..+. .+|+.|++.
T Consensus 318 ---~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls 354 (754)
T PRK15370 318 ---ALPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVS 354 (754)
T ss_pred ---cCCccc--cccceeccccCCccccCChhhc-CcccEEECC
Confidence 111111 1467777777777666665432 456666554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.1e-10 Score=148.76 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=112.3
Q ss_pred CCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCCcEEEcc
Q 000375 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV-ATIGDLKKLEILSLR 228 (1607)
Q Consensus 150 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~ 228 (1607)
.+...|.+.++.+. .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.++.+ ..+ ..+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECc
Confidence 45678889888776 577654 4689999999999999998765 5899999999998865 333 3589999999
Q ss_pred cCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeec
Q 000375 229 HSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (1607)
Q Consensus 229 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 308 (1607)
+|.+..+|..+. .+|+.|++++|. +..+|.. +. .+|+.|++++|.++ ..+..+. ++|+.|+++.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt--------~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIR--------TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccc--------cCcccch--hhHHHHHhcC
Confidence 999999998775 589999999987 7788876 43 58999999999875 1222222 3678888888
Q ss_pred CCCCCCCcc
Q 000375 309 PDAQVMPQD 317 (1607)
Q Consensus 309 ~~~~~~~~~ 317 (1607)
|.+..+|..
T Consensus 314 N~Lt~LP~~ 322 (754)
T PRK15370 314 NSLTALPET 322 (754)
T ss_pred CccccCCcc
Confidence 877666543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=5.7e-11 Score=153.57 Aligned_cols=272 Identities=22% Similarity=0.278 Sum_probs=174.0
Q ss_pred cccCCCcceEEEeeCCCceeeecCCcccccCCCCCCcccccccccccccCcccccccccCCccccccccccccccccccC
Q 000375 1163 IIELPSLVNLWIENCRNMKTFISSSTPVIIAPNKEPQQMTSQENLLADIQPLFDEKVKLPSLEVLGISQMDNLRKIWQDR 1242 (1607)
Q Consensus 1163 ~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~L~~l~~~~~l~~l~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 1242 (1607)
+..+|.|+.|++++|.++..+ |..++.+-+|++|++++ ..++.+|.+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~L-------------------------------P~~I~~Li~LryL~L~~-t~I~~LP~~- 613 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKL-------------------------------PSSIGELVHLRYLDLSD-TGISHLPSG- 613 (889)
T ss_pred HhhCcceEEEECCCCCccCcC-------------------------------ChHHhhhhhhhcccccC-CCccccchH-
Confidence 345777777777777666543 34566777888888887 557777666
Q ss_pred ccccccccccEEEeecccCcccccchhHHhhcccccEEEEeccccceEeeeccccccCCccchhhhhcccCCCcccCCcc
Q 000375 1243 LSLDSFCKLNCLVIQRCKKLLSIFPWNMLQRLQKLEKLEVVYCESVQRISELRALNYGDARAISVAQLRETLPICVFPLL 1322 (1607)
Q Consensus 1243 ~~l~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~C~~l~~l~~l~~l~~~~~~~~~l~~l~~~~~l~~l~~L 1322 (1607)
+.++.+|.+|++..+..+..+ ..+...+++|++|.+..-..-... ..+ ..+..+..|
T Consensus 614 --l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~-------------~~l------~el~~Le~L 670 (889)
T KOG4658|consen 614 --LGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDK-------------LLL------KELENLEHL 670 (889)
T ss_pred --HHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccch-------------hhH------Hhhhcccch
Confidence 888888888888887777665 334556888888888765300000 000 011233344
Q ss_pred cEEEcCCCCC--cccccCCccccCCCcee----EEEeeCCcchhhhhhhhcccCCccccCCCCCCCcccccccccccCCC
Q 000375 1323 TSLKLRSLPR--LKCFYPGVHISEWPMLK----YLDISGCAELEILASKFLSLGETHVDGQHDSQTQQPFFSFDKVAFPS 1396 (1607)
Q Consensus 1323 ~~L~L~~c~~--l~~~~~~~~~~~~~~L~----~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1396 (1607)
+.+....+.. +.++ ...+.|. .+.+.+|..-+... ++ ..+.+
T Consensus 671 ~~ls~~~~s~~~~e~l------~~~~~L~~~~~~l~~~~~~~~~~~~------------------------~~--~~l~~ 718 (889)
T KOG4658|consen 671 ENLSITISSVLLLEDL------LGMTRLRSLLQSLSIEGCSKRTLIS------------------------SL--GSLGN 718 (889)
T ss_pred hhheeecchhHhHhhh------hhhHHHHHHhHhhhhcccccceeec------------------------cc--ccccC
Confidence 4444433222 0000 0111111 11111111100000 00 11377
Q ss_pred cceEEccCCCCcceEeecCCCCccccccccccceecCCCCc-CCCCcCEEEEecCCCcccccchHhhhhccCccEEEEcc
Q 000375 1397 LKELRLSRLPKLFWLCKETSHPRNVFQNECSKLDILVPSSV-SFGNLSTLEVSKCGRLMNLMTISTAERLVNLERMNVTD 1475 (1607)
Q Consensus 1397 L~~L~L~~c~~l~~~~~~~~~~~~~l~~~c~~l~~l~~~~~-~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 1475 (1607)
|+.|.+.+|...+......... ... +|+++..+.+.+|..++++.+..++ |+|+.|.+.+
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~----------------~~~~~f~~l~~~~~~~~~~~r~l~~~~f~---~~L~~l~l~~ 779 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESL----------------IVLLCFPNLSKVSILNCHMLRDLTWLLFA---PHLTSLSLVS 779 (889)
T ss_pred cceEEEEcCCCchhhccccccc----------------chhhhHHHHHHHHhhccccccccchhhcc---CcccEEEEec
Confidence 8888888887654332111110 001 4789999999999999999777666 9999999999
Q ss_pred ccccccccccccccc---ccccccCccCEE-ecccCCCcceeeCCCccccCCCccEEeeccCccccccCCCC
Q 000375 1476 CKMIQQIIQQVGEVE---KDCIVFSQLKYL-GLHCLPSLKSFCMGNKALEFPCLEQVIVEECPKMKIFSQGV 1543 (1607)
Q Consensus 1476 C~~l~eii~~~~~~~---~~~~~~~~L~~L-~L~~lp~L~~~~~~~~~~~~psLe~l~v~~C~~l~~lp~~~ 1543 (1607)
|+.+++++..+.... .....|.++..+ .+.+++.+++++... ..+|.|+++.|..||+++++|...
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcccc
Confidence 999999998765332 235789999999 699999999999866 888899999999999999999853
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-11 Score=135.16 Aligned_cols=140 Identities=24% Similarity=0.345 Sum_probs=107.5
Q ss_pred CCCCCcCCCCCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCC-CcccCCCCCCCEEEccC-CCCCCc-
Q 000375 137 FRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLES-CLLGDV- 213 (1607)
Q Consensus 137 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~-~~l~~l- 213 (1607)
+..+.++|.... .....+.+..|.++ .+|+..|+.+++||.|||++|.|+.+ |+.|..+..|-.|-+-+ |+|+.+
T Consensus 55 ~~GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 334555555431 23456777778776 78888889999999999999998875 78888888877776666 778865
Q ss_pred -cccCCCCCCcEEEcccCCCcccc-hhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCcc
Q 000375 214 -ATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (1607)
Q Consensus 214 -~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~ 279 (1607)
..|++|..|+.|.+..|++..++ ..+..|++|..|.+.+|. +..++.+.+..+.+++++.+..|.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 77888999999888888888554 468888888888888887 777887668888888888876654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=2.6e-10 Score=125.47 Aligned_cols=198 Identities=19% Similarity=0.255 Sum_probs=132.8
Q ss_pred CCCCcEEEeeCCCCCcCCCCC--CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeC-CCCCCCCc-ccCCCCCCCE
Q 000375 127 HKDPTAISIPFRGIYEFPERL--ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTG-FRFPSLPS-SIGCLISLRT 202 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp~-~i~~L~~Lr~ 202 (1607)
+.....+.+..|.|+.+|+.. .+++||.|+++.|.++. +.++.|.+++.|..|-+.+ |.|+.+|+ .|++|..|+-
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 778889999999999999865 89999999999999984 4445558888887776666 89999885 5778888888
Q ss_pred EEccCCCCCCc--cccCCCCCCcEEEcccCCCcccch-hccCCCCCCEEeccCCcC------------------------
Q 000375 203 LTLESCLLGDV--ATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMK------------------------ 255 (1607)
Q Consensus 203 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~------------------------ 255 (1607)
|.+.-|.+.-+ ..+..|++|..|.+..|.+..++. .+..+..++++.+..|.+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 87777776633 566677777777777776666655 455555555554432220
Q ss_pred -------------------------------------ccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCC
Q 000375 256 -------------------------------------LKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQL 298 (1607)
Q Consensus 256 -------------------------------------~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 298 (1607)
...-|..-|.+|++|++|++++|.++ .-..+.+..+
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-------~i~~~aFe~~ 297 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-------RIEDGAFEGA 297 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-------hhhhhhhcch
Confidence 01122223567777777777777764 1223445555
Q ss_pred CCCCEEEeecCCCCCCCccc--ccccCcEeEEEecC
Q 000375 299 SRLTTLEVHIPDAQVMPQDL--LSVELERYRICIGD 332 (1607)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 332 (1607)
..++.|.+..|+++.+...+ .+..|+.|.++.+.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 66666666666666555543 55566666665443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2.1e-10 Score=131.75 Aligned_cols=178 Identities=21% Similarity=0.348 Sum_probs=154.9
Q ss_pred CCCCcEEEeeCCCCCcCCCCC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEc
Q 000375 127 HKDPTAISIPFRGIYEFPERL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 205 (1607)
+......+++.|++..+|... .+..|..+.++.|.+. .+|..+ .++..|.+|+++.|+++.+|..++.|+ |++|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 445667788899999888766 6778888999988875 677776 789999999999999999999998876 999999
Q ss_pred cCCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCcccc
Q 000375 206 ESCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEI 284 (1607)
Q Consensus 206 ~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 284 (1607)
++|+++.+ ..|+.+..|..||.+.|.+..+|..++.|.+|+.|.++.|+ +..+|++ +..| .|..|+++.|++.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis--- 224 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS--- 224 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee---
Confidence 99999854 88998999999999999999999999999999999999988 7789988 6655 5889999999886
Q ss_pred ccccccChhhcCCCCCCCEEEeecCCCCCCCccc
Q 000375 285 EGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL 318 (1607)
Q Consensus 285 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 318 (1607)
..+..+.+|++|++|-+..|.+..-|..+
T Consensus 225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -----ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 67888999999999999999988888776
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=3.3e-10 Score=130.22 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=155.3
Q ss_pred EEEeeCCCCCcCCCC---CCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCC
Q 000375 132 AISIPFRGIYEFPER---LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESC 208 (1607)
Q Consensus 132 ~L~l~~~~~~~~~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~ 208 (1607)
++.+++.+...+|.. ..+..-...+++.|.+. .+|..+ ..+..|..+.+..|.+..+|..++++..|.||+++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 345555555555532 25556667788888876 688776 7788899999999999999999999999999999999
Q ss_pred CCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccc
Q 000375 209 LLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQ 287 (1607)
Q Consensus 209 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 287 (1607)
.+..+ ..++.|+ |++|-+++|+++.+|..|+.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 99854 7777776 899999999999999999999999999999998 8889998 999999999999888774
Q ss_pred cccChhhcCCCCCCCEEEeecCCCCCCCccc-ccccCcEeEEE
Q 000375 288 SNASLVELKQLSRLTTLEVHIPDAQVMPQDL-LSVELERYRIC 329 (1607)
Q Consensus 288 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~ 329 (1607)
..+.++..|+ |..||++.|++..+|-.+ .+..|+.|.+.
T Consensus 203 --~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 203 --DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred --hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeec
Confidence 5678888664 888999999999999887 78888888765
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=6.5e-09 Score=107.68 Aligned_cols=129 Identities=22% Similarity=0.333 Sum_probs=44.7
Q ss_pred CCCCccEEEEeCCCCCCCCcccC-CCCCCCEEEccCCCCCCccccCCCCCCcEEEcccCCCcccchhcc-CCCCCCEEec
Q 000375 173 GMTELRVLSFTGFRFPSLPSSIG-CLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIG-QLTRLKLLDL 250 (1607)
Q Consensus 173 ~l~~Lr~L~L~~~~~~~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L~l 250 (1607)
+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++.+..+.+|++|++++|+|+.++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777776653 354 467777777777777777777777777777777777777765543 5777777777
Q ss_pred cCCcCccccCc-cccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEee
Q 000375 251 SNCMKLKVIRP-NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (1607)
Q Consensus 251 ~~~~~~~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 307 (1607)
++|+ +..+.. ..++.+++|++|++.+|.+. ........-+..+++|+.||-.
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~----~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC----EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG----GSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCccc----chhhHHHHHHHHcChhheeCCE
Confidence 7776 443322 12556777777777777664 2222223445566777776544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=5.5e-09 Score=108.20 Aligned_cols=137 Identities=26% Similarity=0.342 Sum_probs=52.2
Q ss_pred EeCCCCCCCCcccCCCCCCCEEEccCCCCCCccccC-CCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccC
Q 000375 182 FTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIG-DLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIR 260 (1607)
Q Consensus 182 L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 260 (1607)
+..+.|+..|. +.+...+|.|+|+++.|+.++.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. +..++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 34445555554 456678999999999999988887 6899999999999999987 48899999999999998 88887
Q ss_pred ccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeecCCCCCCCcc---c--ccccCcEeE
Q 000375 261 PNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQD---L--LSVELERYR 327 (1607)
Q Consensus 261 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~--~~~~L~~L~ 327 (1607)
+.....+++|++|++++|.+. .-..+..++.+++|+.|++.+|.+...+.. + .+++|+.|+
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cchHHhCCcCCEEECcCCcCC------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 552246899999999999986 234567888999999999999986654432 1 556666654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=2.5e-09 Score=112.94 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=117.1
Q ss_pred CCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccC
Q 000375 173 GMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSN 252 (1607)
Q Consensus 173 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 252 (1607)
..+.|..+|+++|.|+.+..+..-++.+|.|++++|.|..+.++..|++|+.||+++|.++++-..-.+|-|.++|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34678999999999999999999999999999999999988889999999999999999988877777888999999999
Q ss_pred CcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeecCCCCCCCcc
Q 000375 253 CMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQD 317 (1607)
Q Consensus 253 ~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 317 (1607)
|. +..+.. +++|-+|..|++.+|++. .-.....+++++.|+.+.+..|.+..+++.
T Consensus 362 N~-iE~LSG--L~KLYSLvnLDl~~N~Ie------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 NK-IETLSG--LRKLYSLVNLDLSSNQIE------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hh-Hhhhhh--hHhhhhheeccccccchh------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 87 777763 889999999999999885 234467789999999999998887766643
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=8.5e-09 Score=122.89 Aligned_cols=83 Identities=27% Similarity=0.287 Sum_probs=38.9
Q ss_pred hCCCCccEEEEeCCCCCC-CCcccCCCCC---CCEEEccCCCCCC-----c-cccCCC-CCCcEEEcccCCCc-----cc
Q 000375 172 EGMTELRVLSFTGFRFPS-LPSSIGCLIS---LRTLTLESCLLGD-----V-ATIGDL-KKLEILSLRHSDVE-----EL 235 (1607)
Q Consensus 172 ~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~---Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~l~~~~l~-----~l 235 (1607)
..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. + ..+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 445555555555555542 2222322222 5555555555441 1 233344 55555555555544 23
Q ss_pred chhccCCCCCCEEeccCCc
Q 000375 236 PGEIGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~ 254 (1607)
+..+..+.+|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 158 AKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHhCCCcCEEECcCCC
Confidence 3334444555555555554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.2e-08 Score=108.03 Aligned_cols=128 Identities=23% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCcccc-CCCCCCcEEEc
Q 000375 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATI-GDLKKLEILSL 227 (1607)
Q Consensus 149 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i-~~L~~L~~L~l 227 (1607)
...|..+++++|.++ .+..++ .-.+.+|+|++++|.+..+-. +..|++|+.|||++|.+..+.++ .+|.|.++|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 455667777777664 344444 456677777777777765543 66677777777777776655332 46677777777
Q ss_pred ccCCCcccchhccCCCCCCEEeccCCcCccccCc-cccCCCCCCcEEEccCccCc
Q 000375 228 RHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYMGNSFTE 281 (1607)
Q Consensus 228 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~i~~L~~L~~L~l~~~~~~ 281 (1607)
++|.+..+. ++++|++|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+.
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777666653 36777777777777766 444321 12677777777777777664
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.38 E-value=1.3e-07 Score=112.58 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=36.4
Q ss_pred CCccEEEEeCCCCC-----CCCcccCCCCCCCEEEccCCCCCC-----c-cccCCCCCCcEEEcccCCCc-----ccchh
Q 000375 175 TELRVLSFTGFRFP-----SLPSSIGCLISLRTLTLESCLLGD-----V-ATIGDLKKLEILSLRHSDVE-----ELPGE 238 (1607)
Q Consensus 175 ~~Lr~L~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~-----~lp~~ 238 (1607)
++|+.|++++|.++ .++..+..+.+|++|++++|.+.. + ..+..+++|++|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555544 122334444455555555554441 1 22333345555555555443 22333
Q ss_pred ccCCCCCCEEeccCCc
Q 000375 239 IGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 239 i~~L~~L~~L~l~~~~ 254 (1607)
+.++++|++|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 217 LASLKSLEVLNLGDNN 232 (319)
T ss_pred hcccCCCCEEecCCCc
Confidence 4444555555555544
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=3.1e-07 Score=112.63 Aligned_cols=170 Identities=27% Similarity=0.343 Sum_probs=96.8
Q ss_pred CCCCccEEEecCCCCCCCCchhhhhCCC-CccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCCcEE
Q 000375 148 ECPKLKLFVLFSENLSLRIPDLFFEGMT-ELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV-ATIGDLKKLEIL 225 (1607)
Q Consensus 148 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L 225 (1607)
..+.+..|.+.+|.+. .++... ..++ +|+.|++++|.+..+|..+..+++|+.|++++|.+..+ ...+.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4455666666666554 344433 3342 66666666666666665566666666666666666654 333366666666
Q ss_pred EcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEE
Q 000375 226 SLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (1607)
Q Consensus 226 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 305 (1607)
++++|++..+|..++.+.+|++|.+++|. ....+.. +.++.++..+.+.++.+. ..+..++.+++++.|+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLD 261 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhccccccceec
Confidence 66666666666665555666666666664 2233333 556666666655555442 1134555556666666
Q ss_pred eecCCCCCCCcccccccCcEeEEE
Q 000375 306 VHIPDAQVMPQDLLSVELERYRIC 329 (1607)
Q Consensus 306 l~~~~~~~~~~~~~~~~L~~L~i~ 329 (1607)
++.|.+..++......+++.+.+.
T Consensus 262 ~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 262 LSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred cccccccccccccccCccCEEecc
Confidence 666666555553344555555544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=3.7e-07 Score=112.01 Aligned_cols=148 Identities=26% Similarity=0.356 Sum_probs=69.5
Q ss_pred CCcEEEeeCCCCCcCCCCCCCC--CccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEcc
Q 000375 129 DPTAISIPFRGIYEFPERLECP--KLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLE 206 (1607)
Q Consensus 129 ~lr~L~l~~~~~~~~~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~ 206 (1607)
.++.+++..|.+.+++...... +|+.|++++|.+. .+|..+ ..++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3445555555555444444222 4555555555443 232222 44555555555555555555444445555555555
Q ss_pred CCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCccC
Q 000375 207 SCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFT 280 (1607)
Q Consensus 207 ~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~~ 280 (1607)
+|.+..+ ..++.+.+|++|.+++|.+.+.+..+.++.++..+.+.++. +..++.. ++.+.++++|++++|.+
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQI 267 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccc
Confidence 5555443 22234444555555555444444445555555555544444 3333332 44555555555554444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=8.2e-07 Score=100.07 Aligned_cols=187 Identities=21% Similarity=0.170 Sum_probs=115.7
Q ss_pred CCCCcEEEeeCCCCCcCCC--CC-CCCCccEEEecCCCCCCCC-chhhhhCCCCccEEEEeCCCCCCCCcc--cCCCCCC
Q 000375 127 HKDPTAISIPFRGIYEFPE--RL-ECPKLKLFVLFSENLSLRI-PDLFFEGMTELRVLSFTGFRFPSLPSS--IGCLISL 200 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~--~~-~~~~Lr~L~l~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~L~~L 200 (1607)
.+++|.+++.+..+...+. .. .++++|.|+++.|-+.... -..+...+++|+.|+++.|.+...-++ -..+.||
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 5678888888877765542 22 7888888888887654321 233446788888888888877532221 1256788
Q ss_pred CEEEccCCCCC--Cc-cccCCCCCCcEEEcccC-CCcccchhccCCCCCCEEeccCCcCccccCc-cccCCCCCCcEEEc
Q 000375 201 RTLTLESCLLG--DV-ATIGDLKKLEILSLRHS-DVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYM 275 (1607)
Q Consensus 201 r~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~i~~L~~L~~L~l 275 (1607)
+.|.++.|.++ ++ .-....++|+.|++.+| .+..--.....++.|+.||+++|. +...+. ..++.++.|+.|.+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhc
Confidence 88888888877 34 34456778888888887 333222233445678888888877 334441 12677777777777
Q ss_pred cCccCccccccccccChhhcCCCCCCCEEEeecCCCCCCC
Q 000375 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (1607)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 315 (1607)
+.+.+. ...............+++|+.|.+..|++...+
T Consensus 279 s~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 279 SSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cccCcc-hhcCCCccchhhhcccccceeeecccCcccccc
Confidence 776654 000001122223455667777777777664444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.2e-07 Score=101.02 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=129.1
Q ss_pred CCCCcEEEeeCCCCCcCCC---CC-CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCC--CCcccCCCCCC
Q 000375 127 HKDPTAISIPFRGIYEFPE---RL-ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPS--LPSSIGCLISL 200 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~---~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~L 200 (1607)
..++|.|++++|-+..+.. .. .+++|+.|+++.|.+........-..+++|+.|.+++|.++. +-.....++.|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 7899999999997775433 22 799999999999986532222222367899999999999973 44445678899
Q ss_pred CEEEccCCCCCC--ccccCCCCCCcEEEcccCCCcccc--hhccCCCCCCEEeccCCcCcccc--Ccc----ccCCCCCC
Q 000375 201 RTLTLESCLLGD--VATIGDLKKLEILSLRHSDVEELP--GEIGQLTRLKLLDLSNCMKLKVI--RPN----VISSLSRL 270 (1607)
Q Consensus 201 r~L~L~~~~l~~--l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~l--p~~----~i~~L~~L 270 (1607)
..|+|.+|.... -.+...++.|+.|||++|.+..++ ..++.++.|+.|+++.|. +.++ |+. ......+|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccc
Confidence 999999996332 255567899999999999888777 468999999999999887 4443 221 02456899
Q ss_pred cEEEccCccCccccccccccChhhcCCCCCCCEEEeecCC
Q 000375 271 EELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPD 310 (1607)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 310 (1607)
+.|++..|.+. .......+..+.+|+.|.+..|.
T Consensus 304 ~~L~i~~N~I~------~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 304 EYLNISENNIR------DWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred eeeecccCccc------cccccchhhccchhhhhhccccc
Confidence 99999999884 22344556666666766655554
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.03 E-value=3.7e-07 Score=115.99 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=42.1
Q ss_pred ccCCccccccccccccccccccCccccccccccEEEeecccCcccccchhHHhhcccccEEEEeccccc
Q 000375 1220 KLPSLEVLGISQMDNLRKIWQDRLSLDSFCKLNCLVIQRCKKLLSIFPWNMLQRLQKLEKLEVVYCESV 1288 (1607)
Q Consensus 1220 ~l~~L~~L~l~~c~~L~~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~C~~l 1288 (1607)
.+++|+.|++++|..+.+..... ....|++|+.|.+.+|..+++..-..+.+++++|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 34666667777666554442220 012367777777777776665555556667777777777777665
No 38
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.3e-05 Score=102.73 Aligned_cols=104 Identities=19% Similarity=0.353 Sum_probs=90.1
Q ss_pred CccEEEEeCCCCC-CCCcccCCCCCCCEEEccCCCCC-Cc-cccCCCCCCcEEEcccCCCc-ccchhccCCCCCCEEecc
Q 000375 176 ELRVLSFTGFRFP-SLPSSIGCLISLRTLTLESCLLG-DV-ATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLS 251 (1607)
Q Consensus 176 ~Lr~L~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 251 (1607)
.++.|+|+++.+. .+|..++++.+|++|+|++|.+. .+ ..++.+.+|++|++++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999997 58999999999999999999987 44 68999999999999999998 789999999999999999
Q ss_pred CCcCccccCccccCC-CCCCcEEEccCccC
Q 000375 252 NCMKLKVIRPNVISS-LSRLEELYMGNSFT 280 (1607)
Q Consensus 252 ~~~~~~~lp~~~i~~-L~~L~~L~l~~~~~ 280 (1607)
+|...+.+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99977788887 554 35777888887754
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=7.3e-06 Score=69.67 Aligned_cols=58 Identities=36% Similarity=0.515 Sum_probs=33.6
Q ss_pred CCcEEEcccCCCcccch-hccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEccCcc
Q 000375 221 KLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSF 279 (1607)
Q Consensus 221 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~~~~ 279 (1607)
+|++|++++|+++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556666665665553 45556666666666555 555555555666666666665553
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.95 E-value=1.2e-06 Score=111.26 Aligned_cols=122 Identities=24% Similarity=0.224 Sum_probs=85.5
Q ss_pred ccCCccccccccccccccccccCccccccccccEEEeecc-cCccccc--chhHHhhcccccEEEEeccccceEeeeccc
Q 000375 1220 KLPSLEVLGISQMDNLRKIWQDRLSLDSFCKLNCLVIQRC-KKLLSIF--PWNMLQRLQKLEKLEVVYCESVQRISELRA 1296 (1607)
Q Consensus 1220 ~l~~L~~L~l~~c~~L~~~~~~~~~l~~~~~L~~L~l~~c-~~l~~~~--p~~~l~~l~~L~~L~l~~C~~l~~l~~l~~ 1296 (1607)
.++.|+.|.+.+|..+.+.+.. .....++.|++|++.+| ....... .....+.+.+|+.|++++|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~---- 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG---- 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh----
Confidence 3688888999888888764311 12567888999999873 3332221 12355677888999999887643321
Q ss_pred cccCCccchhhhhcccCCCcccCCcccEEEcCCCCCcccccCCccccCCCceeEEEeeCCcchhh
Q 000375 1297 LNYGDARAISVAQLRETLPICVFPLLTSLKLRSLPRLKCFYPGVHISEWPMLKYLDISGCAELEI 1361 (1607)
Q Consensus 1297 l~~~~~~~~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 1361 (1607)
+..+ ...|++|+.|.+.+|..+++.+.......||+|++|++++|..+++
T Consensus 261 ----------l~~l-----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 261 ----------LSAL-----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred ----------HHHH-----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 1100 1248899999999999888888888888899999999999988754
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=3e-05 Score=90.28 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhh-ccHHHHhhhcc
Q 000375 1568 NSTIQKLFVEMVC-ADLTKFLMQFP 1591 (1607)
Q Consensus 1568 ~~~i~~~~~~~~~-~~~~~~~~~~~ 1591 (1607)
++.|+.+...... ..-.+|+.+-|
T Consensus 289 ~~~i~~~~~~~~r~~~~~~~~~~h~ 313 (426)
T PRK15386 289 DALIKEALNDHDRGIKFKQFLKNHN 313 (426)
T ss_pred chhhhhhhhhhhhhhHHHHHHHhCc
Confidence 4556665555443 34455555444
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.88 E-value=1.9e-05 Score=101.27 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=88.5
Q ss_pred CCCEEEccCCCCC-C-ccccCCCCCCcEEEcccCCCc-ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEc
Q 000375 199 SLRTLTLESCLLG-D-VATIGDLKKLEILSLRHSDVE-ELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYM 275 (1607)
Q Consensus 199 ~Lr~L~L~~~~l~-~-l~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l 275 (1607)
.++.|+|+++.+. . +..++++.+|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4889999999987 3 378999999999999999998 89999999999999999999966788877 999999999999
Q ss_pred cCccCccccccccccChhhcCCC-CCCCEEEeecCC
Q 000375 276 GNSFTEWEIEGQSNASLVELKQL-SRLTTLEVHIPD 310 (1607)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 310 (1607)
++|.+. +..+..++.+ .++..+++..|.
T Consensus 498 s~N~l~-------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-------ccCChHHhhccccCceEEecCCc
Confidence 999885 3455556543 467788888775
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2e-06 Score=91.82 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred cccccccEEEeecccCcccccchhHHhhcccccEEEEeccccceEeeeccccccCCccchhhhhcccCCCcccCCcccEE
Q 000375 1246 DSFCKLNCLVIQRCKKLLSIFPWNMLQRLQKLEKLEVVYCESVQRISELRALNYGDARAISVAQLRETLPICVFPLLTSL 1325 (1607)
Q Consensus 1246 ~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~C~~l~~l~~l~~l~~~~~~~~~l~~l~~~~~l~~l~~L~~L 1325 (1607)
..-.+|+.|+++.|..++.....-++.+|+.|..|+++.|.-..+... ......-+.|+.|
T Consensus 231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-------------------v~V~hise~l~~L 291 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-------------------VAVAHISETLTQL 291 (419)
T ss_pred hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-------------------HHHhhhchhhhhh
Confidence 344667777777777777665556777888888888888865433310 0001223577778
Q ss_pred EcCCCC-CcccccCCccccCCCceeEEEeeCCcchhh
Q 000375 1326 KLRSLP-RLKCFYPGVHISEWPMLKYLDISGCAELEI 1361 (1607)
Q Consensus 1326 ~L~~c~-~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 1361 (1607)
+|++|. ++..--.......||.|..|++++|..++.
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 888773 222222233445677888888888777764
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.1e-05 Score=68.51 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.0
Q ss_pred ccEEEEeCCCCCC
Q 000375 177 LRVLSFTGFRFPS 189 (1607)
Q Consensus 177 Lr~L~L~~~~~~~ 189 (1607)
|++|++++|.++.
T Consensus 3 L~~L~l~~n~l~~ 15 (61)
T PF13855_consen 3 LESLDLSNNKLTE 15 (61)
T ss_dssp ESEEEETSSTESE
T ss_pred CcEEECCCCCCCc
Confidence 3333333333333
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.1e-07 Score=110.28 Aligned_cols=180 Identities=21% Similarity=0.188 Sum_probs=126.2
Q ss_pred ccCCCCCcEEEeeCCCCCcCCCCCC-CCCccEEEecCCC---------CCCCCchhhhhCCCCccEEEEeCCCCCCCCcc
Q 000375 124 KKTHKDPTAISIPFRGIYEFPERLE-CPKLKLFVLFSEN---------LSLRIPDLFFEGMTELRVLSFTGFRFPSLPSS 193 (1607)
Q Consensus 124 ~~~~~~lr~L~l~~~~~~~~~~~~~-~~~Lr~L~l~~~~---------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 193 (1607)
..+.+.+|+|-+.++.+..+..... -..|+.|...+.- -.+.+..++ ....|.+-+.++|.+..+-.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHH
Confidence 3447888888888887764322111 1233333332110 001111111 234577788888888888888
Q ss_pred cCCCCCCCEEEccCCCCCCccccCCCCCCcEEEcccCCCcccch-hccCCCCCCEEeccCCcCccccCccccCCCCCCcE
Q 000375 194 IGCLISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEE 272 (1607)
Q Consensus 194 i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~ 272 (1607)
+.-+++|+.|+|++|+++....+..+.+|++|||++|.+..+|. +.... +|+.|++++|. ++.+.. |.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhc
Confidence 88889999999999999988888999999999999999998886 22222 49999999987 777764 889999999
Q ss_pred EEccCccCccccccccccChhhcCCCCCCCEEEeecCCCCCCC
Q 000375 273 LYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMP 315 (1607)
Q Consensus 273 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 315 (1607)
|+++.|-+. .......|+.|..|+.|.+.+|.+..-|
T Consensus 259 LDlsyNll~------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLS------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhh------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999988775 2234566777788888999888755443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.1e-06 Score=93.82 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=102.9
Q ss_pred HHHHHhhcccCCccccccccCCCcceeccCCCCccccccCccEEEEeccCCCCCCCCchhHhhcCCCcEEEEEeccccee
Q 000375 1043 QKLFEEMVGYHDKACLSLSKFPHLKEIWHGQALPVSFFINLRWLVVDDCRFMSGAIPANQLQNLINLKTLEVRNCYFLEQ 1122 (1607)
Q Consensus 1043 ~~~~~~~~~~~~L~~L~l~~~~~l~~~w~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~c~~l~~ 1122 (1607)
..+..-+.++++||.|.|+|..--.++-.. ...=.+|+.|++++|..++.....-++.+|+.|.+|+++-|.-.+.
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 344455667889999999886411111110 1123689999999999998765666788899999999999876555
Q ss_pred EeeccccCCCCcccccccccceeeccCCcCceEeecCCCccccCCCcceEEEeeCCCceeeecCCcccccCCCCCCcccc
Q 000375 1123 VFHLEEQNPIGQFRSLFPKLRNLKLINLPQLIRFCNFTGRIIELPSLVNLWIENCRNMKTFISSSTPVIIAPNKEPQQMT 1202 (1607)
Q Consensus 1123 i~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~L~~l~~~~ 1202 (1607)
.... .+...-+.|+.|+|+||..--.......-...+|+|.+|++++|..++.
T Consensus 276 ~Vtv-------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-------------------- 328 (419)
T KOG2120|consen 276 KVTV-------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-------------------- 328 (419)
T ss_pred hhhH-------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--------------------
Confidence 4221 1333446788888888754221111100134677777777777776662
Q ss_pred cccccccccCcccccccccCCccccccccccccccccccCccccccccccEEEeecc
Q 000375 1203 SQENLLADIQPLFDEKVKLPSLEVLGISQMDNLRKIWQDRLSLDSFCKLNCLVIQRC 1259 (1607)
Q Consensus 1203 ~l~~l~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~l~~~~~L~~L~l~~c 1259 (1607)
..+.++..++-|++|.++.|..+ +|.....+.+.|+|..|++.+|
T Consensus 329 ----------~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 ----------DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ----------hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 11123345566666666666544 2222223445555555555555
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=6.6e-05 Score=87.48 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=34.9
Q ss_pred CCCcceeeeccccccccccccccCcccCCCccEEEEecCCCcceeccCcHHHHHhcCCccEEEEecCcchH
Q 000375 692 LPRLEVLSIDMMDNMRKIWHHQLALNSFSKLKALEVTNCGKLANIFPANIIMRRRLDRLEYLKVDGCASVE 762 (1607)
Q Consensus 692 ~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~~~~~~l~~L~~L~i~~C~~l~ 762 (1607)
+++++.|.|++| +++.++. + .++|++|.+.+|.+++.+ |.. -.++|++|.+++|..+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~--L----P~sLtsL~Lsnc~nLtsL-P~~-----LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV--L----PNELTEITIENCNNLTTL-PGS-----IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC--C----CCCCcEEEccCCCCcccC-Cch-----hhhhhhheEccCccccc
Confidence 456677777776 5666652 1 245777777777777554 543 13466677776665544
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=6.2e-06 Score=101.13 Aligned_cols=104 Identities=23% Similarity=0.432 Sum_probs=53.7
Q ss_pred CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCccccCCCCCCcEEEc
Q 000375 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEILSL 227 (1607)
Q Consensus 148 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 227 (1607)
.++++..|++.+|.+.. +... +..+.+|++|++++|.|+.+. .+..+..|+.|++++|.|..+..+..+..|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhh-cccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 44555555555555432 1111 134555555555555555543 24445555555555555555555555555555555
Q ss_pred ccCCCcccchh-ccCCCCCCEEeccCCc
Q 000375 228 RHSDVEELPGE-IGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 228 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 254 (1607)
++|.+..++.. ...+.+++.+++.+|.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555554443 3455555555555544
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=3.9e-05 Score=97.57 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=79.1
Q ss_pred CCCcEEEeeCCCCC--cCCCC--CCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEE
Q 000375 128 KDPTAISIPFRGIY--EFPER--LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTL 203 (1607)
Q Consensus 128 ~~lr~L~l~~~~~~--~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 203 (1607)
.++++|++.+...- ..+.. ..+|.||+|.+.+-.+...-...++.++++|+.||+++++++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46788888774322 22221 25788888888775543322334456788888888888888777 667888888888
Q ss_pred EccCCCCC---CccccCCCCCCcEEEcccCCCcccch-------hccCCCCCCEEeccCCc
Q 000375 204 TLESCLLG---DVATIGDLKKLEILSLRHSDVEELPG-------EIGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 204 ~L~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~~ 254 (1607)
.+++-.+. .+..+-+|++|++||+|..+-..-+. .-..|++||.||.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88777665 24566777888888887764433331 11235566666655543
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=9.3e-05 Score=57.34 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred CccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc
Q 000375 176 ELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV 213 (1607)
Q Consensus 176 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l 213 (1607)
+|++|++++|.++.+|..+++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666655555555555555555555555433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00015 Score=56.19 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=24.4
Q ss_pred CCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccC
Q 000375 221 KLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIR 260 (1607)
Q Consensus 221 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 260 (1607)
+|++|++++|+|+.+|..+++|++|++|++++|. +..++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666666677777777776665 55544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=6.5e-06 Score=98.04 Aligned_cols=121 Identities=21% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCCCEEEccCCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcEEEcc
Q 000375 198 ISLRTLTLESCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMG 276 (1607)
Q Consensus 198 ~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~ 276 (1607)
..|.+-+.++|.+..+ .++.-++.|+.|||++|++...- .+..+++|+|||++.|. ++.+|.-..... +|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 3466667777777766 67777899999999999998776 68899999999999988 888886322223 49999999
Q ss_pred CccCccccccccccChhhcCCCCCCCEEEeecCCCCCCCccc---ccccCcEeEEEe
Q 000375 277 NSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQVMPQDL---LSVELERYRICI 330 (1607)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~i~~ 330 (1607)
+|.++ ....+.+|++|+.|++++|-+....+.. .+..|+.|.+..
T Consensus 241 nN~l~---------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 241 NNALT---------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred ccHHH---------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 98774 4667788899999999998766554432 445555555543
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=4.8e-05 Score=93.37 Aligned_cols=171 Identities=22% Similarity=0.280 Sum_probs=129.4
Q ss_pred CCCCcEEEeeCCCCCcCCC-CCCCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEc
Q 000375 127 HKDPTAISIPFRGIYEFPE-RLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTL 205 (1607)
Q Consensus 127 ~~~lr~L~l~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 205 (1607)
.+++..+++.+|.+..+.. ...+++|+.|++++|.+....+ +..+..|+.|++++|.++.+.. +..+..|+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence 6789999999999998888 5689999999999999874322 2567889999999999987754 566999999999
Q ss_pred cCCCCCCccc--cCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCC--CcEEEccCccCc
Q 000375 206 ESCLLGDVAT--IGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSR--LEELYMGNSFTE 281 (1607)
Q Consensus 206 ~~~~l~~l~~--i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~--L~~L~l~~~~~~ 281 (1607)
++|.+..+.. ...+..++.+++.+|.+..+.. +..+..+..+++..|. +..+-. +..+.. |+++++.++.+.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCccc
Confidence 9999998766 6899999999999998876543 4444555555777766 433322 334444 889998888774
Q ss_pred cccccccccChhhcCCCCCCCEEEeecCCCCC
Q 000375 282 WEIEGQSNASLVELKQLSRLTTLEVHIPDAQV 313 (1607)
Q Consensus 282 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 313 (1607)
.....+..+.++..|++..+....
T Consensus 246 --------~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 246 --------RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred --------cccccccccccccccchhhccccc
Confidence 111556677778888877665443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.06 E-value=0.00035 Score=89.11 Aligned_cols=106 Identities=24% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCCccEEEecCCCC-CCCCchhhhhCCCCccEEEEeCCCCCC--CCcccCCCCCCCEEEccCCCCCCccccCCCCCCcEE
Q 000375 149 CPKLKLFVLFSENL-SLRIPDLFFEGMTELRVLSFTGFRFPS--LPSSIGCLISLRTLTLESCLLGDVATIGDLKKLEIL 225 (1607)
Q Consensus 149 ~~~Lr~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 225 (1607)
-.+|++|++.|... ....|..+...+|.||.|.+.+-.+.. +-.-..++++|+.||++++.++.+.+|++|++||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 45677777766442 233445555567777777777655432 222334566777777777777766777777777777
Q ss_pred EcccCCCcccc--hhccCCCCCCEEeccCCc
Q 000375 226 SLRHSDVEELP--GEIGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 226 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 254 (1607)
.+++=.+..-+ ..+.+|++|++||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66665444322 245666677777766543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.03 E-value=0.00012 Score=81.02 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=115.0
Q ss_pred CCCcEEEeeCCCCC--cCCC---CC-CCCCccEEEecCCCCCCCC----ch--------hhhhCCCCccEEEEeCCCCCC
Q 000375 128 KDPTAISIPFRGIY--EFPE---RL-ECPKLKLFVLFSENLSLRI----PD--------LFFEGMTELRVLSFTGFRFPS 189 (1607)
Q Consensus 128 ~~lr~L~l~~~~~~--~~~~---~~-~~~~Lr~L~l~~~~~~~~~----~~--------~~~~~l~~Lr~L~L~~~~~~~ 189 (1607)
.+++.++++.|-+. .++. .. .+..|+.|.+.+|.+...- .. .....-+.|||+....|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 37888888888665 1221 11 5788888888887664210 00 112455678888888888764
Q ss_pred C-----CcccCCCCCCCEEEccCCCCCC-----c-cccCCCCCCcEEEcccCCCc-----ccchhccCCCCCCEEeccCC
Q 000375 190 L-----PSSIGCLISLRTLTLESCLLGD-----V-ATIGDLKKLEILSLRHSDVE-----ELPGEIGQLTRLKLLDLSNC 253 (1607)
Q Consensus 190 l-----p~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 253 (1607)
- ...|...+.|+.+.+..|.|.. + ..+..+++|++||++.|.++ .+...+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 3445666788888888887651 1 56777888888888888665 24445666778888888887
Q ss_pred cCccc-----cCccccCCCCCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeecCCCC
Q 000375 254 MKLKV-----IRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQ 312 (1607)
Q Consensus 254 ~~~~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 312 (1607)
. ++. +-...-...++|++|.+.+|.++.+.. ......+...+.|++|+++.|+.+
T Consensus 252 l-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~---~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 L-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA---LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred c-cccccHHHHHHHHhccCCCCceeccCcchhHHHHH---HHHHHHHhcchhhHHhcCCccccc
Confidence 6 322 111111346788888888887762211 122234455778888888888764
No 56
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.96 E-value=0.00032 Score=81.94 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=30.7
Q ss_pred hhhhHHHhccccCCCCccChhHHHHHHhhcCccccc
Q 000375 23 EAKSLFRLCGLLNGGSQIPIDALMRCGMGLGLLKGV 58 (1607)
Q Consensus 23 ~lK~CFly~s~Fp~~~~i~~~~Li~~WiaeG~i~~~ 58 (1607)
++|+||+|||+||+++.|+++.||++|+|||||+..
T Consensus 250 ~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 250 ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 479999999999999999999999999999999754
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0019 Score=66.21 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=47.2
Q ss_pred CCEEEccCCCCCCccccCCCCCCcEEEcccCCCcccchhccCC-CCCCEEeccCCcCccccCc-cccCCCCCCcEEEccC
Q 000375 200 LRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQL-TRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYMGN 277 (1607)
Q Consensus 200 Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~-~~i~~L~~L~~L~l~~ 277 (1607)
...+||++|.+..+..+..+..|.+|.+++|+|+.+-+.+..+ ++|..|.+.+|+ +..+-+ .-+..+++|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecC
Confidence 3444555555444444555555555555555555544434332 345555555544 222211 0034445555555555
Q ss_pred ccCccccccccccChhhcCCCCCCCEEEeec
Q 000375 278 SFTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (1607)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 308 (1607)
|.+. .......--+..+++|+.||.+.
T Consensus 123 Npv~----~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVE----HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred Cchh----cccCceeEEEEecCcceEeehhh
Confidence 5443 11222223344555555555543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.61 E-value=0.00017 Score=68.68 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=41.7
Q ss_pred CCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCC-CccccCCCCCCcEEEc
Q 000375 149 CPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSL 227 (1607)
Q Consensus 149 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~-~l~~i~~L~~L~~L~l 227 (1607)
..+|...++++|.+. .+|..+-.+++.+..|++++|.++.+|..+..++.||.|+++.|.+. .+..|..|.+|-+|+.
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 344444455555443 44544444445555555555555555555555555555555555433 2333333444444444
Q ss_pred ccCCCcccc
Q 000375 228 RHSDVEELP 236 (1607)
Q Consensus 228 ~~~~l~~lp 236 (1607)
.+|.+.++|
T Consensus 131 ~~na~~eid 139 (177)
T KOG4579|consen 131 PENARAEID 139 (177)
T ss_pred CCCccccCc
Confidence 444444433
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.43 E-value=0.0047 Score=63.48 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=45.2
Q ss_pred hCCCCccEEEEeCCCCCCCCcccCC-CCCCCEEEccCCCCC---CccccCCCCCCcEEEcccCCCcccch----hccCCC
Q 000375 172 EGMTELRVLSFTGFRFPSLPSSIGC-LISLRTLTLESCLLG---DVATIGDLKKLEILSLRHSDVEELPG----EIGQLT 243 (1607)
Q Consensus 172 ~~l~~Lr~L~L~~~~~~~lp~~i~~-L~~Lr~L~L~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~ 243 (1607)
..++.|.+|.+.+|.|+.+-..+.. +++|..|.|.+|+|. ++..+..++.|++|.+-+|.+++.+. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4455555555555555554333332 334555666555544 23444555666666666666554433 266777
Q ss_pred CCCEEeccCC
Q 000375 244 RLKLLDLSNC 253 (1607)
Q Consensus 244 ~L~~L~l~~~ 253 (1607)
+|++||...-
T Consensus 141 ~l~~LDF~kV 150 (233)
T KOG1644|consen 141 SLRTLDFQKV 150 (233)
T ss_pred cceEeehhhh
Confidence 7777776553
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.38 E-value=0.0011 Score=73.49 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCCCccEEEecCCCCCCC---CchhhhhCCCCccEEEEeCCCCCC-----CCcccCCCCCCCEEEccCCCCCC-----c-
Q 000375 148 ECPKLKLFVLFSENLSLR---IPDLFFEGMTELRVLSFTGFRFPS-----LPSSIGCLISLRTLTLESCLLGD-----V- 213 (1607)
Q Consensus 148 ~~~~Lr~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~l~~-----l- 213 (1607)
+-++||++....|.+... .....|...+.|..+.+..|.|.. +-..+..++||++|||+.|.++. +
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 456666666666654321 111223555666666666666531 23445566677777777666541 2
Q ss_pred cccCCCCCCcEEEcccCCCcc-----cchhcc-CCCCCCEEeccCCcCccc-----cCccccCCCCCCcEEEccCccC
Q 000375 214 ATIGDLKKLEILSLRHSDVEE-----LPGEIG-QLTRLKLLDLSNCMKLKV-----IRPNVISSLSRLEELYMGNSFT 280 (1607)
Q Consensus 214 ~~i~~L~~L~~L~l~~~~l~~-----lp~~i~-~L~~L~~L~l~~~~~~~~-----lp~~~i~~L~~L~~L~l~~~~~ 280 (1607)
..++.+++|+.|++++|.++. +-..+. ..++|+.|.+.+|. ++. +-.. +...+.|+.|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~-~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAAC-MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHH-HhcchhhHHhcCCcccc
Confidence 445556667777776665541 222221 24667777777665 211 1111 44566777777777766
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0008 Score=72.56 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCCcEEEcccCCCc---ccchhccCCCCCCEEeccCCcCc---cccCccccCCCCCCcEEEccCccCccccccccccChh
Q 000375 220 KKLEILSLRHSDVE---ELPGEIGQLTRLKLLDLSNCMKL---KVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLV 293 (1607)
Q Consensus 220 ~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~---~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 293 (1607)
.+++.||+.+|.|+ ++-.-..+|+.|++|+++.|..- +.+| ..+.+|++|-+.|..+.|.. .-.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~------~~s 140 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQ------STS 140 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhh------hhh
Confidence 34444444444433 22222345555555555555411 1111 13346666666666555421 123
Q ss_pred hcCCCCCCCEEEeecCC
Q 000375 294 ELKQLSRLTTLEVHIPD 310 (1607)
Q Consensus 294 ~l~~l~~L~~L~l~~~~ 310 (1607)
.+..++.++.|+++.|+
T Consensus 141 ~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhcchhhhhhhhccch
Confidence 44555566666665554
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.002 Score=69.53 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCCCccEEEecCCCCCCC-CchhhhhCCCCccEEEEeCCCCCCCCccc-CCCCCCCEEEccCCCCC--Cc-cccCCCCCC
Q 000375 148 ECPKLKLFVLFSENLSLR-IPDLFFEGMTELRVLSFTGFRFPSLPSSI-GCLISLRTLTLESCLLG--DV-ATIGDLKKL 222 (1607)
Q Consensus 148 ~~~~Lr~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~L~~Lr~L~L~~~~l~--~l-~~i~~L~~L 222 (1607)
.+++++.+++.+|.++.. --..++.++++|++|+++.|++...-.+. ..+.+|++|-|.++.+. .. .....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 344555555555544421 01122345555555555555443211111 23445555555555443 12 333444444
Q ss_pred cEEEcccC
Q 000375 223 EILSLRHS 230 (1607)
Q Consensus 223 ~~L~l~~~ 230 (1607)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 44444444
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.97 E-value=0.00092 Score=63.85 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=66.8
Q ss_pred hCCCCccEEEEeCCCCCCCCcccCCC-CCCCEEEccCCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEe
Q 000375 172 EGMTELRVLSFTGFRFPSLPSSIGCL-ISLRTLTLESCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLD 249 (1607)
Q Consensus 172 ~~l~~Lr~L~L~~~~~~~lp~~i~~L-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 249 (1607)
.+-.+|...++++|.+.++|+.|... +.+..|++++|.|.++ ..+..++.|+.|+++.|.+...|+-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45667778888888888888777643 4778888888887754 557777888888888888887777777777887787
Q ss_pred ccCCcCccccCcc
Q 000375 250 LSNCMKLKVIRPN 262 (1607)
Q Consensus 250 l~~~~~~~~lp~~ 262 (1607)
..+|. ...+|.+
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 77766 4555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.08 E-value=0.013 Score=63.33 Aligned_cols=78 Identities=28% Similarity=0.345 Sum_probs=33.6
Q ss_pred CCEEEccCCCCCCccccCCCCCCcEEEcccC--CCc-ccchhccCCCCCCEEeccCCcCcc---ccCccccCCCCCCcEE
Q 000375 200 LRTLTLESCLLGDVATIGDLKKLEILSLRHS--DVE-ELPGEIGQLTRLKLLDLSNCMKLK---VIRPNVISSLSRLEEL 273 (1607)
Q Consensus 200 Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~~---~lp~~~i~~L~~L~~L 273 (1607)
|+.|++.+..++.+..+-.|++|++|+++.| ++. .++.-..++++|++|++++|+ ++ ++++ +.++.+|..|
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~nL~~L 121 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELENLKSL 121 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcchhhh
Confidence 3333344444433344444455555555554 322 333333334555555555554 22 2222 3344445555
Q ss_pred EccCccC
Q 000375 274 YMGNSFT 280 (1607)
Q Consensus 274 ~l~~~~~ 280 (1607)
++++|..
T Consensus 122 dl~n~~~ 128 (260)
T KOG2739|consen 122 DLFNCSV 128 (260)
T ss_pred hcccCCc
Confidence 5544443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.0017 Score=69.41 Aligned_cols=105 Identities=25% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCCCCEEEccCCCCCCccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCc-cccCCCCCCcEEEc
Q 000375 197 LISLRTLTLESCLLGDVATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYM 275 (1607)
Q Consensus 197 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~i~~L~~L~~L~l 275 (1607)
+.+.+-|+..+|.+.++.-+.+++.|++|.|+-|+|+.+-. +.++++|+.|+|+.|. +..+.+ ..+.++++|++|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 34445555666666666556666666666666666666543 5556666666666655 333322 11456666666666
Q ss_pred cCccCccccccccccChhhcCCCCCCCEEE
Q 000375 276 GNSFTEWEIEGQSNASLVELKQLSRLTTLE 305 (1607)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 305 (1607)
..|..... +.......-+.-|+||++|+
T Consensus 96 ~ENPCc~~--ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE--AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc--cchhHHHHHHHHcccchhcc
Confidence 65543200 00011123345566666654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.69 E-value=0.038 Score=59.82 Aligned_cols=82 Identities=23% Similarity=0.275 Sum_probs=46.8
Q ss_pred CCCCccEEEEeCC--CCC-CCCcccCCCCCCCEEEccCCCCCCc---cccCCCCCCcEEEcccCCCcccch----hccCC
Q 000375 173 GMTELRVLSFTGF--RFP-SLPSSIGCLISLRTLTLESCLLGDV---ATIGDLKKLEILSLRHSDVEELPG----EIGQL 242 (1607)
Q Consensus 173 ~l~~Lr~L~L~~~--~~~-~lp~~i~~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L 242 (1607)
.+++|+.|.++.| .+. .++-..-++++|++|++++|+|+.+ .....+.+|..|++..|..+.+-. -+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4455555555555 222 2333333446666666666665533 445566677777777776654422 25566
Q ss_pred CCCCEEeccCCc
Q 000375 243 TRLKLLDLSNCM 254 (1607)
Q Consensus 243 ~~L~~L~l~~~~ 254 (1607)
++|.+||-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 788888766544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.0066 Score=65.16 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCCc---cccCCCCCCcEEE
Q 000375 150 PKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGDV---ATIGDLKKLEILS 226 (1607)
Q Consensus 150 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~ 226 (1607)
.+++-|++.++.+.. -++..+|+.|.||.|+-|.|+.+. .+..++.|+.|+|+.|.|..+ .-+.+|++|++|.
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344455555554431 134568888888888888887764 367778888888888877644 3344555555555
Q ss_pred cccC
Q 000375 227 LRHS 230 (1607)
Q Consensus 227 l~~~ 230 (1607)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.34 E-value=0.034 Score=35.79 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=12.0
Q ss_pred CCcEEEcccCCCcccchhccC
Q 000375 221 KLEILSLRHSDVEELPGEIGQ 241 (1607)
Q Consensus 221 ~L~~L~l~~~~l~~lp~~i~~ 241 (1607)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=0.036 Score=57.41 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=49.7
Q ss_pred cCCCCcCEEEEecCCCcccccchHhhhhccCccEEEEcccccccccccccccccccccccCccCEEecccCCCccee
Q 000375 1437 VSFGNLSTLEVSKCGRLMNLMTISTAERLVNLERMNVTDCKMIQQIIQQVGEVEKDCIVFSQLKYLGLHCLPSLKSF 1513 (1607)
Q Consensus 1437 ~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~eii~~~~~~~~~~~~~~~L~~L~L~~lp~L~~~ 1513 (1607)
..++.++.|.+.+|..+.|-....+.+-.++|++|+|++|+.+++- + -.....|++|+.|.|.++|.....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----G-L~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----G-LACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----H-HHHHHHhhhhHHHHhcCchhhhch
Confidence 3457777888888888877766666666788888888888876332 2 224567788888888887765543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.45 E-value=0.065 Score=34.47 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=13.5
Q ss_pred CccEEEEeCCCCCCCCcccCC
Q 000375 176 ELRVLSFTGFRFPSLPSSIGC 196 (1607)
Q Consensus 176 ~Lr~L~L~~~~~~~lp~~i~~ 196 (1607)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366777777766666666554
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.11 E-value=0.17 Score=54.55 Aligned_cols=82 Identities=23% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCCCccEEEEeCCCCCC-----CCcccCCCCCCCEEEccCCCCC----C-------c-cccCCCCCCcEEEcccCCCc-c
Q 000375 173 GMTELRVLSFTGFRFPS-----LPSSIGCLISLRTLTLESCLLG----D-------V-ATIGDLKKLEILSLRHSDVE-E 234 (1607)
Q Consensus 173 ~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~l~----~-------l-~~i~~L~~L~~L~l~~~~l~-~ 234 (1607)
.+..+..++|+||.|.. +...|.+-.+|++.+++.-... . + +.+-++++|+..+++.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46666777777776642 4445555666666666653211 0 1 34556667777777776544 3
Q ss_pred cch----hccCCCCCCEEeccCCc
Q 000375 235 LPG----EIGQLTRLKLLDLSNCM 254 (1607)
Q Consensus 235 lp~----~i~~L~~L~~L~l~~~~ 254 (1607)
.|. -|++-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 333 25555666777666665
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=0.05 Score=56.36 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=56.1
Q ss_pred cccCCcccEEEcCCCCCcccccCCccccCCCceeEEEeeCCcchhhhhhhhcccCCccccCCCCCCCcccccccccccCC
Q 000375 1316 ICVFPLLTSLKLRSLPRLKCFYPGVHISEWPMLKYLDISGCAELEILASKFLSLGETHVDGQHDSQTQQPFFSFDKVAFP 1395 (1607)
Q Consensus 1316 l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1395 (1607)
+..++++++|.+.+|..+.+........-.|+|+.|+|++|+.+++..-. .+.+ |+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~----------------------~L~~--lk 176 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA----------------------CLLK--LK 176 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH----------------------HHHH--hh
Confidence 45778999999999999999877665556789999999999999865422 2222 48
Q ss_pred CcceEEccCCCCcceE
Q 000375 1396 SLKELRLSRLPKLFWL 1411 (1607)
Q Consensus 1396 ~L~~L~L~~c~~l~~~ 1411 (1607)
||+.|.|.+++.....
T Consensus 177 nLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVANL 192 (221)
T ss_pred hhHHHHhcCchhhhch
Confidence 9999999988766543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.06 E-value=1.2 Score=44.39 Aligned_cols=102 Identities=17% Similarity=0.323 Sum_probs=42.2
Q ss_pred hhhhCCCCccEEEEeCCCCCCCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCCcEEEcccCCCcccch-hccCCCC
Q 000375 169 LFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLGDV--ATIGDLKKLEILSLRHSDVEELPG-EIGQLTR 244 (1607)
Q Consensus 169 ~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~ 244 (1607)
..|.+..+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..+ ..+.....|+.+.+.. .+..++. .+...++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3345555555555543 333332 23455555555555543 4333 3455555566666644 4444433 3444666
Q ss_pred CCEEeccCCcCccccCccccCCCCCCcEEEcc
Q 000375 245 LKLLDLSNCMKLKVIRPNVISSLSRLEELYMG 276 (1607)
Q Consensus 245 L~~L~l~~~~~~~~lp~~~i~~L~~L~~L~l~ 276 (1607)
|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 666666542 445555545554 66666554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.01 E-value=0.33 Score=28.96 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=6.5
Q ss_pred CCcEEEcccCCCcccc
Q 000375 221 KLEILSLRHSDVEELP 236 (1607)
Q Consensus 221 ~L~~L~l~~~~l~~lp 236 (1607)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.02 E-value=2.1 Score=42.67 Aligned_cols=115 Identities=17% Similarity=0.346 Sum_probs=58.0
Q ss_pred CCCCccEEEecCCCCCCCCchhhhhCCCCccEEEEeCCCCCCCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCCcE
Q 000375 148 ECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLGDV--ATIGDLKKLEI 224 (1607)
Q Consensus 148 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 224 (1607)
++++|+.+.+.. ... .++...|..++.|+.+.+.++ +..++ ..|.++..|+.+.+.. .+..+ ..+....+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 566777777664 222 566666778888888888774 65554 3566777788888865 44422 56677888888
Q ss_pred EEcccCCCcccch-hccCCCCCCEEeccCCcCccccCccccCCCCCC
Q 000375 225 LSLRHSDVEELPG-EIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRL 270 (1607)
Q Consensus 225 L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L 270 (1607)
+++..+ +..++. .+.+. +|+.+.+..+ +..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 888664 666654 45665 8888877652 455666555555444
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.48 E-value=0.61 Score=27.82 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=6.8
Q ss_pred CccEEEEeCCCCCCCC
Q 000375 176 ELRVLSFTGFRFPSLP 191 (1607)
Q Consensus 176 ~Lr~L~L~~~~~~~lp 191 (1607)
+||+|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.17 E-value=0.45 Score=32.08 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=16.4
Q ss_pred CCCcCEEEEecCCCcccccchHhh
Q 000375 1439 FGNLSTLEVSKCGRLMNLMTISTA 1462 (1607)
Q Consensus 1439 ~~~L~~L~l~~C~~L~~l~~~~~~ 1462 (1607)
|++|++|+|++|.+++|.....++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467778888888877777544443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.70 E-value=0.031 Score=58.61 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=45.8
Q ss_pred hCCCCccEEEEeCCCCCCCCcccCCCCCCCEEEccCCCCCC-ccccCCCCCCcEEEcccCCCcccchhccCCCCCCEEec
Q 000375 172 EGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLGD-VATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDL 250 (1607)
Q Consensus 172 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~l~~-l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 250 (1607)
..++..++||++.|.+..+-..|+.+..|..|+++.+.+.. +..++.+..++.+++..|..+..|.++++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44556666666666555555555555555555555555552 34555555555555555555555555555555555555
Q ss_pred cCCc
Q 000375 251 SNCM 254 (1607)
Q Consensus 251 ~~~~ 254 (1607)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.06 E-value=2 Score=46.71 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=91.6
Q ss_pred cCCCCCCCEEEccCCCCC-----Cc-cccCCCCCCcEEEcccCC---Cc-ccch-------hccCCCCCCEEeccCCcCc
Q 000375 194 IGCLISLRTLTLESCLLG-----DV-ATIGDLKKLEILSLRHSD---VE-ELPG-------EIGQLTRLKLLDLSNCMKL 256 (1607)
Q Consensus 194 i~~L~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~---l~-~lp~-------~i~~L~~L~~L~l~~~~~~ 256 (1607)
+..+..+..++|++|.|. .+ ..|.+-.+|++.+++.-. .. ++|. .+-++++|+..++++|.+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345778899999999987 23 667778899999988742 22 4554 3568899999999999855
Q ss_pred cccCcc---ccCCCCCCcEEEccCccCccccccccc------cChhhcCCCCCCCEEEeecCCCCCCCccc------ccc
Q 000375 257 KVIRPN---VISSLSRLEELYMGNSFTEWEIEGQSN------ASLVELKQLSRLTTLEVHIPDAQVMPQDL------LSV 321 (1607)
Q Consensus 257 ~~lp~~---~i~~L~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~ 321 (1607)
...|+. .|++-+.|.+|.+.+|.+--...+..+ +.-....+-+.|+......|+....+... .-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 555543 367788999999998876311111111 11123345678999888888887776542 113
Q ss_pred cCcEeEEE
Q 000375 322 ELERYRIC 329 (1607)
Q Consensus 322 ~L~~L~i~ 329 (1607)
+|+.+++.
T Consensus 186 ~lk~vki~ 193 (388)
T COG5238 186 NLKEVKIQ 193 (388)
T ss_pred CceeEEee
Confidence 56666654
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.73 E-value=0.061 Score=56.47 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=53.2
Q ss_pred cCCCCCCCEEEccCCCCCCc-cccCCCCCCcEEEcccCCCcccchhccCCCCCCEEeccCCcCccccCccccCCCCCCcE
Q 000375 194 IGCLISLRTLTLESCLLGDV-ATIGDLKKLEILSLRHSDVEELPGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEE 272 (1607)
Q Consensus 194 i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~i~~L~~L~~ 272 (1607)
|.....-++||++.|.+..+ ..+..+..|..||++.|.+..+|.+++.+..++++++..|. ....|.. .+++++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 44455566666666665544 55666666666666666666666666666666666666555 5566665 666666666
Q ss_pred EEccCccC
Q 000375 273 LYMGNSFT 280 (1607)
Q Consensus 273 L~l~~~~~ 280 (1607)
++..++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 66655543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.71 E-value=1.7 Score=29.17 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=10.9
Q ss_pred CCCcEEEcccCCCcccchh
Q 000375 220 KKLEILSLRHSDVEELPGE 238 (1607)
Q Consensus 220 ~~L~~L~l~~~~l~~lp~~ 238 (1607)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666655554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.71 E-value=1.7 Score=29.17 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=10.9
Q ss_pred CCCcEEEcccCCCcccchh
Q 000375 220 KKLEILSLRHSDVEELPGE 238 (1607)
Q Consensus 220 ~~L~~L~l~~~~l~~lp~~ 238 (1607)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666655554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.47 E-value=2.4 Score=28.59 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=7.7
Q ss_pred CceeEEEeeCCcchhh
Q 000375 1346 PMLKYLDISGCAELEI 1361 (1607)
Q Consensus 1346 ~~L~~L~i~~C~~L~~ 1361 (1607)
|+|+.|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4444555555544443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=69.95 E-value=3.6 Score=27.62 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=17.0
Q ss_pred CCCCCEEeccCCcCccccCcccc
Q 000375 242 LTRLKLLDLSNCMKLKVIRPNVI 264 (1607)
Q Consensus 242 L~~L~~L~l~~~~~~~~lp~~~i 264 (1607)
|++|++|++++|. +..+|++++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 4678888888887 888887644
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=69.95 E-value=3.6 Score=27.62 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=17.0
Q ss_pred CCCCCEEeccCCcCccccCcccc
Q 000375 242 LTRLKLLDLSNCMKLKVIRPNVI 264 (1607)
Q Consensus 242 L~~L~~L~l~~~~~~~~lp~~~i 264 (1607)
|++|++|++++|. +..+|++++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 4678888888887 888887644
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=46.40 E-value=12 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=11.4
Q ss_pred CCcEEEcccCCCcccch
Q 000375 221 KLEILSLRHSDVEELPG 237 (1607)
Q Consensus 221 ~L~~L~l~~~~l~~lp~ 237 (1607)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666777777766665
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.93 E-value=0.51 Score=58.16 Aligned_cols=179 Identities=20% Similarity=0.142 Sum_probs=108.0
Q ss_pred CcEEEeeCCCCCcCC-----CC-CCCCCccEEEecCCCCCCCCchhh---hhCC-CCccEEEEeCCCCCC-----CCccc
Q 000375 130 PTAISIPFRGIYEFP-----ER-LECPKLKLFVLFSENLSLRIPDLF---FEGM-TELRVLSFTGFRFPS-----LPSSI 194 (1607)
Q Consensus 130 lr~L~l~~~~~~~~~-----~~-~~~~~Lr~L~l~~~~~~~~~~~~~---~~~l-~~Lr~L~L~~~~~~~-----lp~~i 194 (1607)
++++++.+|.+..-. .. .....|..|++.+|.+...-...+ +... +.+++|++..|.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677788887766322 11 156778888888887763221111 1222 456777877777653 45666
Q ss_pred CCCCCCCEEEccCCCCC-----Cc-ccc----CCCCCCcEEEcccCCCcc-----cchhccCCCC-CCEEeccCCcCccc
Q 000375 195 GCLISLRTLTLESCLLG-----DV-ATI----GDLKKLEILSLRHSDVEE-----LPGEIGQLTR-LKLLDLSNCMKLKV 258 (1607)
Q Consensus 195 ~~L~~Lr~L~L~~~~l~-----~l-~~i----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~-L~~L~l~~~~~~~~ 258 (1607)
....+++.++++.|.+. .+ ..+ ....++++|++.+|.++. +-..+...+. ++.|++..|. +..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 67888888888888753 11 233 347788888888887662 1223445555 6667777776 332
Q ss_pred -----cCccccCCC-CCCcEEEccCccCccccccccccChhhcCCCCCCCEEEeecCCCCC
Q 000375 259 -----IRPNVISSL-SRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIPDAQV 313 (1607)
Q Consensus 259 -----lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 313 (1607)
+.+. +..+ ..++++++..|++. ..........+...++++.+.+..|....
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~---~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSIT---EKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcc---ccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2222 4455 57788888888775 11112234556666777887777766443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=39.90 E-value=24 Score=23.89 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=5.9
Q ss_pred CCCEEEccCCCCC
Q 000375 199 SLRTLTLESCLLG 211 (1607)
Q Consensus 199 ~Lr~L~L~~~~l~ 211 (1607)
+|++|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=30.78 E-value=21 Score=23.35 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=5.1
Q ss_pred cCccEEEEcccc
Q 000375 1466 VNLERMNVTDCK 1477 (1607)
Q Consensus 1466 ~~L~~L~i~~C~ 1477 (1607)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 445555555554
Done!