Query 000375
Match_columns 1607
No_of_seqs 549 out of 6387
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 16:44:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000375.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_154-158//hhsearch_pdb/000375hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 320.5 36.6 148 151-309 51-210 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 313.6 28.6 128 175-309 50-188 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 284.2 43.5 176 130-315 6-187 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 274.9 41.6 173 127-308 24-204 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 273.3 36.5 175 130-314 14-194 (606)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 270.6 35.1 178 130-315 13-197 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 269.5 33.9 151 152-313 13-167 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 256.1 36.2 148 154-313 16-167 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 256.1 33.1 169 131-310 7-185 (844)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 252.7 33.1 149 154-313 8-162 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=320.54 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCEEEECCCCCCCC---CCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC-CC-C--CCCCCCCCC
Q ss_conf 853899007878987---7635551899865999747899988824489998779980388888-96-4--657878875
Q 000375 151 KLKLFVLFSENLSLR---IPDLFFEGMTELRVLSFTGFRFPSLPSSIGCLISLRTLTLESCLLG-DV-A--TIGDLKKLE 223 (1607)
Q Consensus 151 ~Lr~L~l~~~~~~~~---~~~~~~~~~~~Lr~L~L~~~~i~~lp~~l~~L~~Lr~L~L~~~~i~-~l-~--~i~~L~~L~ 223 (1607)
+++.|++.++...+. ++..+ ..+++|++++++.+.+..+|..++.+.+|++|++++|.+. .+ . .++++.+|+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l-~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSL-LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHT-TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CEEEEECCCCCCCCCCCCCCHHH-HCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 27898778998677557669657-31680224678688867870332457889989898985787078967872788999
Q ss_pred EEECCCCCCC-CCCHHC-CCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 9981138896-456001-599997999465886864217210---49999985999417647520234666481510899
Q 000375 224 ILSLRHSDVE-ELPGEI-GQLTRLKLLDLSNCMKLKVIRPNV---ISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQL 298 (1607)
Q Consensus 224 ~L~l~~~~i~-~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 298 (1607)
+|++++|.+. ..|..+ .++++|++|++++|. +...++.. ++++++|++|++.++.+. + ......+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~-----~~~~~~l 199 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS----G-----DVDVSRC 199 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE----S-----CCBCTTC
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCCCC----C-----CCCCCCC
T ss_conf 898968826774797785638899989897983-58858715566435898898989788034----6-----5784547
Q ss_pred CCCCEEEEECC
Q ss_conf 99999996409
Q 000375 299 SRLTTLEVHIP 309 (1607)
Q Consensus 299 ~~L~~L~l~~~ 309 (1607)
++|+.|+++.+
T Consensus 200 ~~L~~L~Ls~n 210 (768)
T 3rgz_A 200 VNLEFLDVSSN 210 (768)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
T ss_conf 86898989288
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=313.58 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCCEEEEECCCCCC----CCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CCCH--HCCCCCCCC
Q ss_conf 986599974789998----8824489998779980388888-9646578788759981138896-4560--015999979
Q 000375 175 TELRVLSFTGFRFPS----LPSSIGCLISLRTLTLESCLLG-DVATIGDLKKLEILSLRHSDVE-ELPG--EIGQLTRLK 246 (1607)
Q Consensus 175 ~~Lr~L~L~~~~i~~----lp~~l~~L~~Lr~L~L~~~~i~-~l~~i~~L~~L~~L~l~~~~i~-~lP~--~i~~L~~L~ 246 (1607)
.+++.|+++++.+.. +|.++.++++|++++++.+.+. .++.++++.+|++|++++|.+. .+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 92789877899867755766965731680224678688867870332457889989898985787078967872788999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH---CCCCCCCCEEEEECC
Q ss_conf 994658868642172104999998599941764752023466648151---089999999996409
Q 000375 247 LLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVE---LKQLSRLTTLEVHIP 309 (1607)
Q Consensus 247 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~---L~~L~~L~~L~l~~~ 309 (1607)
+|++++|......|...++++++|++|+++++.+. +..+.. +.++++|+.|+++.+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-------GANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE-------EETHHHHHHTTCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-------CCCCHHHHHHCCCCCCCEEECCCC
T ss_conf 89896882677479778563889998989798358-------858715566435898898989788
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=284.23 Aligned_cols=176 Identities=21% Similarity=0.238 Sum_probs=132.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8299910899976799778888538990078789877635551899865999747899988-824489998779980388
Q 000375 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (1607)
Q Consensus 130 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~l~~L~~Lr~L~L~~~ 208 (1607)
.+.++.+++.+..+|.... ++++.|++++|.+. .++...|..+++|++|+++++.++.+ |..++++.+|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCCCCCCC-CCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 8744877798052641248-88768889899778-759788717876758878899648569778740667688889998
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88896--46578788759981138896456-0015999979994658868642172104999998599941764752023
Q 000375 209 LLGDV--ATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (1607)
Q Consensus 209 ~i~~l--~~i~~L~~L~~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 285 (1607)
.+..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++.++.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 158 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ---- 158 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC----
T ss_conf 5675685453038888989898996685396674156788889898995-24667211124556777974588436----
Q ss_pred CCCCCCHHHC--CCCCCCCEEEEECCCCCCCC
Q ss_conf 4666481510--89999999996409999998
Q 000375 286 GQSNASLVEL--KQLSRLTTLEVHIPDAQVMP 315 (1607)
Q Consensus 286 ~~~~~~~~~L--~~L~~L~~L~l~~~~~~~~~ 315 (1607)
......+ ..+++|+.|+++.+....++
T Consensus 159 ---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 159 ---ALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp ---CBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ---CCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf ---52978862446663217988898256558
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=274.93 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=102.5
Q ss_pred CCCCCEEEEECCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEE
Q ss_conf 99982999108999767997--7888853899007878987763555189986599974789998882-44899987799
Q 000375 127 HKDPTAISIPFRGIYEFPER--LECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLPS-SIGCLISLRTL 203 (1607)
Q Consensus 127 ~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~l~~L~~Lr~L 203 (1607)
+.++++++++++.+..++.. .++++|++|++.+|.+.. ++...|..+++|++|+++++.++.+|. .|+.+.+|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 8887688898997787597887178767588788996485-697787406676888899985675685453038888989
Q ss_pred ECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEECCCC
Q ss_conf 8038888896--4657878875998113889645-600159999799946588686421721049--9999859994176
Q 000375 204 TLESCLLGDV--ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVIS--SLSRLEELYMGNS 278 (1607)
Q Consensus 204 ~L~~~~i~~l--~~i~~L~~L~~L~l~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~--~L~~L~~L~l~~~ 278 (1607)
++++|.+..+ ..++++.+|++|++++|.+... |..++++++|++|++++|. +..+++..++ .+++|++|++.++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCCCEEECCCC
T ss_conf 898996685396674156788889898995246672111245567779745884-3652978862446663217988898
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCEEEEEC
Q ss_conf 475202346664815108999999999640
Q 000375 279 FTEWEIEGQSNASLVELKQLSRLTTLEVHI 308 (1607)
Q Consensus 279 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 308 (1607)
.+. ...+..++.+.+|+.+.+..
T Consensus 182 ~l~-------~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 182 QIK-------EFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp CCC-------CBCTTGGGGSSEECEEECTT
T ss_pred CCC-------CCCHHHHHHHHHHHHHHCCC
T ss_conf 256-------55815553223445543056
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=273.34 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=125.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8299910899976799778888538990078789877635551899865999747899988-824489998779980388
Q 000375 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (1607)
Q Consensus 130 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~l~~L~~Lr~L~L~~~ 208 (1607)
.+.++..+..+..+|.... +.++.|++++|.+. .++...|..+++|++|++++|.++.+ |..|..+.+|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCCC-CCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 7237777798062867789-86758981587347-179667256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88896--4657878875998113889645-60015999979994658868642172104999998599941764752023
Q 000375 209 LLGDV--ATIGDLKKLEILSLRHSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIE 285 (1607)
Q Consensus 209 ~i~~l--~~i~~L~~L~~L~l~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 285 (1607)
.+..+ ..++++.+|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++.++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC----
T ss_conf 5654586552344215376521267665781012237822389887983-41147654568765687776568445----
Q ss_pred CCCCCCHHHCCCCCCCC--EEEEECCCCCCC
Q ss_conf 46664815108999999--999640999999
Q 000375 286 GQSNASLVELKQLSRLT--TLEVHIPDAQVM 314 (1607)
Q Consensus 286 ~~~~~~~~~L~~L~~L~--~L~l~~~~~~~~ 314 (1607)
...+..++.+++|+ .|+++.+....+
T Consensus 167 ---~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 167 ---YLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp ---EECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred ---CCCHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf ---5496563322156403896679814754
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=270.64 Aligned_cols=178 Identities=17% Similarity=0.225 Sum_probs=117.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8299910899976799778888538990078789877635551899865999747899988-824489998779980388
Q 000375 130 PTAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESC 208 (1607)
Q Consensus 130 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~l~~L~~Lr~L~L~~~ 208 (1607)
.+.++.+++.+..+|.... ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..|+++.+|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCEECCCCCCCCCCCCCC-CCCCEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 9705746888451898888-87678878889757-737545557766748868877366439777306010688678798
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 88896--46578788759981138896456-001599997999465886864--21721049999985999417647520
Q 000375 209 LLGDV--ATIGDLKKLEILSLRHSDVEELP-GEIGQLTRLKLLDLSNCMKLK--VIRPNVISSLSRLEELYMGNSFTEWE 283 (1607)
Q Consensus 209 ~i~~l--~~i~~L~~L~~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~ 283 (1607)
.+..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++.++.+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~-- 166 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQ-- 166 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCC--
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCE--
T ss_conf 5630485220786537888703775554451134898877989687885-232530686-732677778876688531--
Q ss_pred CCCCCCCCHHHCCCCCC-CCEEEEECCCCCCCC
Q ss_conf 23466648151089999-999996409999998
Q 000375 284 IEGQSNASLVELKQLSR-LTTLEVHIPDAQVMP 315 (1607)
Q Consensus 284 ~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~ 315 (1607)
+......+.+.+++. +..++++.+....++
T Consensus 167 --~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 167 --TITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp --EECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred --ECCHHHHHHHHCCCCCCCEEECCCCCCCEEC
T ss_conf --0573341212034200243004689753257
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=269.50 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=105.8
Q ss_pred CCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEECC
Q ss_conf 5389900787898776355518998659997478999888-2448999877998038888896--465787887599811
Q 000375 152 LKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSLP-SSIGCLISLRTLTLESCLLGDV--ATIGDLKKLEILSLR 228 (1607)
Q Consensus 152 Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~l~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~l~ 228 (1607)
.++++..++.+. .+|..+ ..++++|+++++.++.++ ..|.++.+|++|++++|.+..+ ..|+++.+|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCEECCCCCCC-CCCCCC---CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 970574688845-189888---8876788788897577375455577667488688773664397773060106886787
Q ss_pred CCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 3889645-600159999799946588686421721049999985999417647520234666481510899999999964
Q 000375 229 HSDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (1607)
Q Consensus 229 ~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 307 (1607)
+|.++.+ |..++++++|++|++++|. +..+++..++++++|++|++.+|.+. ....+..++++++|+.|+++
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIH------SCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCC------CCCCCGGGGTCTTCCEEECC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC------CEECHHHHHHCCCCCEEECC
T ss_conf 985630485220786537888703775-55445113489887798968788523------25306867326777788766
Q ss_pred CCCCCC
Q ss_conf 099999
Q 000375 308 IPDAQV 313 (1607)
Q Consensus 308 ~~~~~~ 313 (1607)
.+....
T Consensus 162 ~n~l~~ 167 (606)
T 3vq2_A 162 YNYIQT 167 (606)
T ss_dssp SSCCCE
T ss_pred CCCCEE
T ss_conf 885310
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=256.10 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=82.3
Q ss_pred EEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEECCCC
Q ss_conf 8990078789877635551899865999747899988-82448999877998038888896--46578788759981138
Q 000375 154 LFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCLLGDV--ATIGDLKKLEILSLRHS 230 (1607)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~l~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~l~~~ 230 (1607)
+++..+.... .+|..+ ...+++|+++++.++.+ |..|+++.+|++|++++|.+..+ ..|+++.+|++|++++|
T Consensus 16 ~~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCCC-CCCCCC---CCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 3777779806-286778---986758981587347179667256766528978898355248511368433676448898
Q ss_pred CCCCC-CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECC
Q ss_conf 89645-60015999979994658868642172104999998599941764752023466648151089999999996409
Q 000375 231 DVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRPNVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVHIP 309 (1607)
Q Consensus 231 ~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 309 (1607)
.+..+ |..++++++|++|++++|. +..+++..++++++|++|++.+|.+. ...+..+..+++|+.|+++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-------SIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-------CCCCCTTCCCTTCCEEECCSS
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCCHHCCCCCCCEEECCCCCCC-------CCCCCCCCCCCCCCEEECCCC
T ss_conf 5654586552344215376521267-66578101223782238988798341-------147654568765687776568
Q ss_pred CCCC
Q ss_conf 9999
Q 000375 310 DAQV 313 (1607)
Q Consensus 310 ~~~~ 313 (1607)
....
T Consensus 164 ~l~~ 167 (606)
T 3t6q_A 164 AIHY 167 (606)
T ss_dssp CCCE
T ss_pred CCCC
T ss_conf 4455
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=256.07 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=86.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCC-CCC-CCCCCCCCCCCEEECCCC
Q ss_conf 299910899976799778888538990078789877635551899865999747899-988-824489998779980388
Q 000375 131 TAISIPFRGIYEFPERLECPKLKLFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRF-PSL-PSSIGCLISLRTLTLESC 208 (1607)
Q Consensus 131 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i-~~l-p~~l~~L~~Lr~L~L~~~ 208 (1607)
+.++.+++.+..+|. -.++++.|++++|.+....+. .|..+++|++|+++++.. ..+ |..|.++.+|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEECCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHH-HCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 489823799777898--999868888877867832966-77662137088678997744419778537877888879899
Q ss_pred CCCC--CCCCCCCCCCCEEECCCCCCCC-CCHH--CCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 8889--6465787887599811388964-5600--159999799946588686421-72104999998599941764752
Q 000375 209 LLGD--VATIGDLKKLEILSLRHSDVEE-LPGE--IGQLTRLKLLDLSNCMKLKVI-RPNVISSLSRLEELYMGNSFTEW 282 (1607)
Q Consensus 209 ~i~~--l~~i~~L~~L~~L~l~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~ 282 (1607)
.+.. +..++++.+|++|++++|.+.. +|.. ++++++|++|++++|. +..+ +...++++++|++|++.++.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCHHHHHCCCCCEEECCCCCCC-
T ss_conf 585319767157866587017678897340467645566799988898786-423256655763889898989898477-
Q ss_pred CCCCCCCCCHHHCCCC--CCCCEEEEECCC
Q ss_conf 0234666481510899--999999964099
Q 000375 283 EIEGQSNASLVELKQL--SRLTTLEVHIPD 310 (1607)
Q Consensus 283 ~~~~~~~~~~~~L~~L--~~L~~L~l~~~~ 310 (1607)
...+..+..+ ++|+.|+++.+.
T Consensus 162 ------~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 162 ------LVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp ------CCCSGGGHHHHHCSSCCCEECCSB
T ss_pred ------EECHHHCCCCCCCCCCEEECCCCC
T ss_conf ------667887535567750357897886
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=252.65 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=90.6
Q ss_pred EEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCCC-CCC--CCCCCCCCCCCEEECCC
Q ss_conf 8990078789877635551899865999747899988-8244899987799803888-889--64657878875998113
Q 000375 154 LFVLFSENLSLRIPDLFFEGMTELRVLSFTGFRFPSL-PSSIGCLISLRTLTLESCL-LGD--VATIGDLKKLEILSLRH 229 (1607)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~l~~L~~Lr~L~L~~~~-i~~--l~~i~~L~~L~~L~l~~ 229 (1607)
..+.+++... .+|. .++++++|++++|.++.+ |..|.++.+|++|++++|. +.. +..++++.+|++|++++
T Consensus 8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEECCCCCCC-CCCC----CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 8982379977-7898----9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 889645-60015999979994658868642172-1049999985999417647520234666481510899999999964
Q 000375 230 SDVEEL-PGEIGQLTRLKLLDLSNCMKLKVIRP-NVISSLSRLEELYMGNSFTEWEIEGQSNASLVELKQLSRLTTLEVH 307 (1607)
Q Consensus 230 ~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 307 (1607)
|.+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+. .......++++++|+.|+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~------~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR------SLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC------CCCCCGGGGTCSSCCEEEEE
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC------CCCCCHHHHHCCCCCEEECC
T ss_conf 958531976715786658701767889734046764556679998889878642------32566557638898989898
Q ss_pred CCCCCC
Q ss_conf 099999
Q 000375 308 IPDAQV 313 (1607)
Q Consensus 308 ~~~~~~ 313 (1607)
.+....
T Consensus 157 ~N~i~~ 162 (844)
T 3j0a_A 157 SNQIFL 162 (844)
T ss_dssp SSCCCC
T ss_pred CCCCCE
T ss_conf 984776
Done!