Your job contains 1 sequence.
>000377
MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET
VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIE
PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKAST
KRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSG
GQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQ
QGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGK
VHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDA
NRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAF
RNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGN
ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE
MQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPM
NSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSF
SIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTT
EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE
SVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRR
IKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHK
RKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ
EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS
EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR
GPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY
LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL
WALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL
RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNIC
NHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD
VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT
VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT
AGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARR
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000377
(1605 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 3162 0. 4
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 1277 2.5e-148 4
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 1263 2.2e-147 4
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 1263 5.9e-147 4
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 1263 3.2e-146 4
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 1241 2.0e-145 7
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 1251 2.4e-144 3
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 1264 6.3e-144 3
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 1263 1.3e-143 3
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 1263 1.3e-143 3
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 1263 2.7e-143 3
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 1263 2.7e-143 3
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 1251 4.4e-143 3
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 1251 4.4e-143 3
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 1251 4.4e-143 3
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 1251 4.4e-143 3
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 1251 4.4e-143 3
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 1251 4.4e-143 3
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 1251 4.4e-143 3
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 1263 7.4e-143 4
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 1328 5.0e-142 3
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 1239 5.0e-142 3
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 1247 6.3e-142 3
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 1228 6.3e-142 3
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 1253 4.4e-141 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 1341 9.1e-141 2
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 1251 8.2e-138 2
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 1291 7.4e-137 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 1282 1.5e-136 3
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 1282 1.5e-136 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 1314 1.9e-136 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 1318 1.6e-134 1
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 1317 2.0e-134 1
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 1246 4.8e-129 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 1225 7.0e-128 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 1251 2.0e-127 1
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 1210 4.4e-123 1
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 1176 5.8e-122 2
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 1191 4.6e-121 1
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 1084 1.3e-114 5
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 921 8.1e-97 3
GENEDB_PFALCIPARUM|PFB0730w - symbol:PFB0730w "DNA helica... 783 2.7e-96 4
UNIPROTKB|O96239 - symbol:PFB0730w "DEAD/DEAH box helicas... 783 2.7e-96 4
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 937 3.6e-96 2
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 922 4.3e-96 3
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 921 5.6e-96 3
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 922 4.3e-94 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 929 5.1e-94 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 929 5.1e-94 2
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 922 5.5e-94 2
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 921 7.0e-94 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 925 4.7e-93 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 923 4.8e-93 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 907 1.9e-92 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 929 2.0e-92 1
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 934 3.0e-92 3
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 934 3.0e-92 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 922 1.2e-91 1
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 921 1.5e-91 1
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 921 1.5e-91 1
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 915 6.7e-91 1
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 912 1.4e-90 1
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 906 6.3e-90 1
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 906 6.3e-90 1
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 891 7.5e-90 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 904 1.0e-89 1
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 903 1.3e-89 1
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 903 1.3e-89 1
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 879 2.2e-89 2
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 900 2.8e-89 1
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 900 2.8e-89 1
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 898 4.6e-89 1
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 799 9.2e-87 4
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 870 2.6e-85 3
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 490 1.5e-84 3
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 859 4.4e-81 3
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 821 8.9e-81 1
POMBASE|SPAC3G6.01 - symbol:hrp3 "ATP-dependent DNA helic... 843 1.3e-80 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 459 1.4e-80 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 460 1.4e-80 2
UNIPROTKB|E2RDK8 - symbol:CHD9 "Uncharacterized protein" ... 797 1.7e-80 3
MGI|MGI:1924001 - symbol:Chd9 "chromodomain helicase DNA ... 804 3.1e-80 3
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 495 4.3e-80 3
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 848 6.1e-80 3
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 849 7.7e-80 2
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 520 1.6e-79 3
UNIPROTKB|E1BDZ3 - symbol:CHD9 "Uncharacterized protein" ... 797 1.8e-79 3
UNIPROTKB|F1MLB2 - symbol:CHD8 "Uncharacterized protein" ... 824 1.9e-79 2
UNIPROTKB|Q3L8U1 - symbol:CHD9 "Chromodomain-helicase-DNA... 797 2.3e-79 3
RGD|1594200 - symbol:LOC680231 "similar to chromodomain h... 805 3.4e-79 3
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 453 3.5e-79 2
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 832 3.6e-79 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 464 4.0e-79 3
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 797 5.3e-79 2
UNIPROTKB|E2QUS7 - symbol:CHD8 "Uncharacterized protein" ... 824 5.3e-79 2
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 520 6.2e-79 4
UNIPROTKB|F1S8J5 - symbol:CHD8 "Uncharacterized protein" ... 824 6.6e-79 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 521 7.5e-79 2
FB|FBgn0250786 - symbol:Chd1 "Chromodomain-helicase-DNA-b... 830 8.0e-79 4
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 823 1.1e-78 3
WARNING: Descriptions of 471 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 3162 (1118.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 610/806 (75%), Positives = 677/806 (83%)
Query: 783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
DEE+ +L P+PKYTMS+KWIM Q ++LLV+++W LKQQK Q + + FN+LKESV
Sbjct: 451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506
Query: 843 SSSEDISAKTKSVIEXXXXXXXXXXXXXXNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
S S+DISAKTKSVIE ++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct: 507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566
Query: 903 QLXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
QL FF +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct: 567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct: 627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686
Query: 1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
K + S FENE DET+T + + E +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct: 687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
F GW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXX 1262
NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTP
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1263 XXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRR 1322
IFNSSEDFSQWFNKPF+SNG++S + IINRLHQVLRPFVLRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct: 986 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1045
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct: 1046 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1105
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
EDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct: 1106 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1165
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct: 1166 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1225
Query: 1563 FFDNNTSAEDRREYLESLLRECKKEE 1588
FFDNNTSAEDR+EYLESLLRE KKEE
Sbjct: 1226 FFDNNTSAEDRKEYLESLLRESKKEE 1251
Score = 590 (212.7 bits), Expect = 0., Sum P(4) = 0.
Identities = 128/226 (56%), Positives = 165/226 (73%)
Query: 2 AAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETV 61
++ +N+ELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMK+SGKE++MPYQVISRAM+TV
Sbjct: 3 SSSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTV 62
Query: 62 INQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEP 121
+NQ+GLD+EALKSS LP G+Q DS +A AGSS Q GV + KA L ENEM+K +
Sbjct: 63 VNQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSS-QAVGVSNEGKATLVENEMTKYDA 121
Query: 122 FTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER-----QKDGK 176
FTS R + A +YQ SGT +S++SFD ESPS+LD+ S SQ R Q+D
Sbjct: 122 FTSGRQLGGSNSASQTFYQGSGT-QSNRSFDRESPSNLDSTSGISQPHNRSETMNQRD-V 179
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
K+S KRKRG+SS+S + +N Q DS ++ + G+++K++ PG
Sbjct: 180 KSSGKRKRGESSLSWDQNMDNSQIFDSHK--IDDQTGEVSKIEMPG 223
Score = 275 (101.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 102/287 (35%), Positives = 139/287 (48%)
Query: 297 SGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGAN 356
SG+Q G S S++ GT NR+ F+R P N+ + + QP S N
Sbjct: 124 SGRQLGGSNSASQTFYQGSGT-QSNRS---FDRES----PSNLDSTSGISQPHNRSETMN 175
Query: 357 AFG-KVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSN 415
K G G SS + + SQ+F +++ D+ + +S ++ + G
Sbjct: 176 QRDVKSSGKRKRGESSLSWDQ------NMDNSQIFDSHKIDDQTGEVSKIEMPGNSGDIR 229
Query: 416 TL-----SDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQL 470
L SDA Q G Q+S TA +R ++ G + + + SG PF+EQQLKQL
Sbjct: 230 NLHVGLSSDAFTTPQCGWQSS-EATA-IRPAIHKEPGNNVAGEGFLPSGSPFREQQLKQL 287
Query: 471 RAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTM-KVQSSNDPSSAP 529
RAQCLVFLA RNGLVPKKLH+EIAL N F E DG R EL D + +S+D P
Sbjct: 288 RAQCLVFLALRNGLVPKKLHVEIALRNTFREE----DGFRGELFDPKGRTHTSSDLGGIP 343
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKS 576
V+A R N T R+ E D SSKE E ++ +KS
Sbjct: 344 DVSALLSRTDNP--TGRLD----------EMDFSSKETERSRLGEKS 378
Score = 62 (26.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 594 TGKL-EAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVAS 652
TG+L E + S+ET S+ S + + S + LA P + + + + + +
Sbjct: 356 TGRLDEMDFSSKETERSRLGEKSFANTVFSDGQK-LLASRIPSSQAQT-QVAVSHSQLTF 413
Query: 653 VTGINKPMNSEINSWTGIGSQNEV 676
G+ K SE+ WTG+ N++
Sbjct: 414 SPGLTKNTPSEMVGWTGVIKTNDL 437
Score = 48 (22.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 144 THRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR-GDSSISHEPQNENPQQLD 202
TH SS S+L +R+ N + + D T+R R G+ S ++ ++ + L
Sbjct: 333 THTSSDLGGIPDVSALLSRTDNPTGRLDEMDFSSKETERSRLGEKSFANTVFSDGQKLLA 392
Query: 203 SR 204
SR
Sbjct: 393 SR 394
Score = 48 (22.0 bits), Expect = 4.3e-51, Sum P(2) = 4.3e-51
Identities = 42/195 (21%), Positives = 78/195 (40%)
Query: 485 VPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS-SAPGVTAPYG----RLG 539
+ L + NI ++ +V+ + ELVD + + S +P P + P G LG
Sbjct: 2950 IEPSLSISAVQKNIEDKDQSHVETAGSELVD-VSAECSTEPQVQLPPSSEPVGDMHVHLG 3008
Query: 540 NARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERK---QLATGK 596
A +++ + G S + E EN K P+ S+ A ++ Q+ T
Sbjct: 3009 -ASKSEIVAEGTDFSSSLPKT-----EEENAKSQLADTEPSS-SLTAVQKNIEDQVETAG 3061
Query: 597 LEAEMQSQE-TAESQAFFTSASQQLESASTRGTLAITNPVNDVENG-HLFIG----RANV 650
E + S + E Q +++ + + T ++ + V+N HL G + ++
Sbjct: 3062 CEFVVVSTGCSTEPQVQLPPSAEPVVAEGTEFPSSLL--MTGVDNSSHLMTGVDNAKTHL 3119
Query: 651 ASVTGINKPMNSEIN 665
A V + P E N
Sbjct: 3120 ADVVPSSSPTTMEKN 3134
Score = 45 (20.9 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 28/120 (23%), Positives = 50/120 (41%)
Query: 495 LGNIFP---REGGNVDGSRRELVDTMKVQSSND---PSSAPGVTAPYGRLGNARETDRIP 548
+G I P +E +V S +V + V S + PS P GN + D +
Sbjct: 2654 VGGIVPENLQEIVDVPASPHGVVPDVVVSQSEEIQSPSILPDDVPGQPDDGNCEKMDTMQ 2713
Query: 549 PG-----GSSSGGFLEADSSSK-EVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQ 602
G +SG + SS++ E EN + P++ + R Q+ G +E++++
Sbjct: 2714 NNTSIDIGITSGKTCQPSSSTQPEDENRNSLSHC-EPSEVVEQRDSRDQVCIGSVESQVE 2772
Score = 44 (20.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 52/247 (21%), Positives = 92/247 (37%)
Query: 559 EADSSSKEVENLK-MMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSAS 617
+AD+ E++ K G +E K L +E+E + ++T +S A
Sbjct: 2249 DADTEQDPEESVSDQRPKVGSAYTQMEDTDEAKLLMGCSVESE-EKEKTLQSHIPGDDAD 2307
Query: 618 QQL---ESASTRGT----LAITNP-VNDVENGHLFIGRANVASVTGINKPMNSEINSWTG 669
+ ES S +G + T+ + D + L +G +VAS K + S I
Sbjct: 2308 TEKNPEESVSVQGVDRPKVGTTDTQMEDTNDAKLLVG-CSVASEEK-EKTLQSHIPGDDA 2365
Query: 670 IGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPV 729
QN P + V V N TQ + + S +++ +
Sbjct: 2366 DTEQN--PEESVSVQGVNRPKV-GNANTQMEDTDEAKVLVGCSVESEEKEKTLQSH---I 2419
Query: 730 SGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDN--SVRNGISLTTEQDEEDK 787
G D+D P + S D PK DG+ +++ + + + E +E++K
Sbjct: 2420 PGDDADTEQN-PEESVSNF------DRPK--DGTADTHMEDIDDAKLLVGCSVESEEKEK 2470
Query: 788 SLHTDSP 794
SL + P
Sbjct: 2471 SLQSHMP 2477
Score = 44 (20.5 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 34/148 (22%), Positives = 49/148 (33%)
Query: 597 LEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGI 656
LEA M S+ + S+ E + G LA P V L + + N+ I
Sbjct: 3417 LEAAMNSETVVTEGSELPSSLPMTEDENADGQLAEVEP--SVS---LTVEQTNIEEKDHI 3471
Query: 657 NKPMNSEINSWTGIGSQNEVPRRPLPAPT----VQHELVKDNDPTQFKSFGHSGASGNQH 712
++ G SQ EV P P V E V D S + ++
Sbjct: 3472 ETAECELVDVSPGCSSQPEVKFPPSPDAVGGMDVHLETVVTEDTDSNSSLPKTEEKDAEN 3531
Query: 713 ANSHLSSFSIRDQWKPVSGTDSDRYSLI 740
+ L S V GT + SL+
Sbjct: 3532 PSDRLDGESDGTTVATVEGTCVESNSLV 3559
Score = 43 (20.2 bits), Expect = 1.2e-49, Sum P(4) = 1.2e-49
Identities = 26/113 (23%), Positives = 44/113 (38%)
Query: 692 KDNDPTQFKSFGHS-GASGNQHANSHLSSFSIRDQWKPVSGTDS-DRYSLIPVKDASGML 749
K+N+ + + H G+ H S S D K + T + ++ + GM
Sbjct: 1283 KENEMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMK 1342
Query: 750 RHTSQ----DDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPK 798
R D ++ G R VR+ TE++ E K T+SP +P+
Sbjct: 1343 RKDGSMGGLDTHQYGRGKRA----REVRSYEEKLTEEEFE-KLCQTESPDSPQ 1390
Score = 41 (19.5 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 24/106 (22%), Positives = 37/106 (34%)
Query: 553 SSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAF 612
SS LEA S L D SGPP S+ A G+ + + +
Sbjct: 1490 SSDKRLEAASHPTSSLALTSPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGRGRRV 1549
Query: 613 FTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINK 658
S+ T+ T T+ +D E + R+ V+ + K
Sbjct: 1550 -EGVLHGSNSSITQRTETATSLASDAEATKFALPRSASEIVSRVPK 1594
Score = 40 (19.1 bits), Expect = 3.1e-48, Sum P(3) = 3.1e-48
Identities = 27/149 (18%), Positives = 56/149 (37%)
Query: 562 SSSKEVENLKMMDKSGPPAD-HSIHAEERKQLATGKLEAEMQSQ-ETAESQAFFTSASQQ 619
S E+ L + ++ + +I + +EA+ Q Q +TA + T S +
Sbjct: 3174 SEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSE 3233
Query: 620 LE-----SASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQN 674
+ SA G + + + + +G A + + P+ E N+ + +
Sbjct: 3234 PQVHLPPSAEPDGDIHVHLKETEKSESMVVVGEGT-AFPSSL--PVTEEGNAESQLADTE 3290
Query: 675 EVPRRPLPAPTVQHELVKDNDPTQFKSFG 703
P +PTV + +KD + + G
Sbjct: 3291 -----PFTSPTVVEKNIKDQEQVETTGCG 3314
Score = 38 (18.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1524 GQKRDVLVLRFETVQTVEEQVRASAE 1549
G KR+ ++L E V ++ ++E
Sbjct: 2080 GDKREAILLSSEEQTNVNSKIETNSE 2105
Score = 37 (18.1 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 1169 IVYCG-PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227
+V C EE+ + + I + E + N DRPK H ID+ +
Sbjct: 2401 LVGCSVESEEKEKTLQSHIPGDDADTEQNPEESVSN-FDRPKDGTADTHMEDIDDAKLLV 2459
Query: 1228 NASCKLNADLKHYQS 1242
S + K QS
Sbjct: 2460 GCSVESEEKEKSLQS 2474
Score = 37 (18.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 505 NVDGSRRELVDTMKVQSSNDPSS 527
++ LVD M ++ S +P +
Sbjct: 2818 DIQAEPSNLVDQMDIEESKEPGT 2840
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 1277 (454.6 bits), Expect = 2.5e-148, Sum P(4) = 2.5e-148
Identities = 271/576 (47%), Positives = 367/576 (63%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + +E+ ET ++E + V++E S QA S++ YY +AH++ E V
Sbjct: 659 EEKKVIDPNSDEVSETAAKHIIESAKQDVDDE-YSSQAGQ--TSSQSYYGVAHAVIERVD 715
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q T L G L++YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q I LI YLME K
Sbjct: 716 KQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRLN 775
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E++ WAP I KI Y G P RR L + + KFNVL+TTYEY
Sbjct: 776 GPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQ-LRSGKFNVLITTYEY 834
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 835 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 892
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 893 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 948
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE-ENL----GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ + + GS + KG+ ++
Sbjct: 949 LRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLM 1008
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTL-IPKHYL--PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+L+ ICNHPY+ Q H EE + L P + P + R GK E+LDR+LPKLKAT
Sbjct: 1009 NTIMQLKKICNHPYMFQ-HIEESFAEHLGFPNGIISGPDLYRASGKFELLDRILPKLKAT 1067
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ ++EDY ++ + YLRLDG T DR L+ KFN++ S +FIFLLS
Sbjct: 1068 NHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLS 1127
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1128 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1187
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
A+A++KL V + I AG FD +S+ +RR +L+++L
Sbjct: 1188 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL 1223
Score = 117 (46.2 bits), Expect = 2.5e-148, Sum P(4) = 2.5e-148
Identities = 24/99 (24%), Positives = 53/99 (53%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K + +H ER +++ +RI++E++ L D
Sbjct: 454 YLNSILQHAKDFKEYHRSISGKIQKLSKAIATWHTNTEREQKKETERIEKERMRRLMAED 513
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS 1024
EGY +++ K R+ LL++T++Y+ L + E K+
Sbjct: 514 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVYEHKA 552
Score = 75 (31.5 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 35/155 (22%), Positives = 62/155 (40%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGK-MNKVDA 220
++A + ++R+K K+A G EP +EN Q + V+ GK + DA
Sbjct: 554 QAAKEKKKKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPVKVIQTETGKVLQGTDA 613
Query: 221 PGGFSVKGAEQSN--FNMVPSGGQMEHFSSLS--GNMSSILRVKQEGQNVTEKPLDSANV 276
P ++ + N + + P E S + + R + E + V + P +S V
Sbjct: 614 PKSSQLEAWLEMNPGYEVAPRSDSEESGSDFEEEDDEEVVSRAESEEKKVID-P-NSDEV 671
Query: 277 SNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGV 311
S + + ++V+ S Q S S GV
Sbjct: 672 SETAAKHIIESAKQDVDDEYSSQAGQTSSQSYYGV 706
Score = 51 (23.0 bits), Expect = 2.5e-148, Sum P(4) = 2.5e-148
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 462 FKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
F QL+QLRAQ L + G +P+ L L +
Sbjct: 174 FSPVQLQQLRAQILAYKILGRGQPLPENLQLAV 206
Score = 51 (23.0 bits), Expect = 2.5e-148, Sum P(4) = 2.5e-148
Identities = 36/157 (22%), Positives = 55/157 (35%)
Query: 238 PSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSAS 297
PS G + S S+ Q GQ E + + + +++
Sbjct: 36 PSPGSVHSMMGPSPGPPSVPHTMQ-GQGAGEYSQEMHPMHKPMEGMHEKAMADDIHY--- 91
Query: 298 GQQQGNSLSSAN-GVLASRGTWNQNRAGF----PFERSQVPRF-PGNMMIETPMQQPTVS 351
GQ +G + S + G+ + +Q+ G+ P QVP P M P P
Sbjct: 92 GQMKGVGMRSLHSGMGPPQSPMDQHSQGYMSPHPSPMGQVPEHVPSPMSGGGPT--PPQM 149
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQ 388
S G + MP+ P G SA SPV+ Q
Sbjct: 150 SQGQSPM------MPMDPQGMGQQARGQSAFSPVQLQ 180
Score = 46 (21.3 bits), Expect = 7.3e-141, Sum P(4) = 7.3e-141
Identities = 35/155 (22%), Positives = 71/155 (45%)
Query: 934 KERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL-RM 992
+E+ E +I++ER R + + E E +R+ ID+ + +++ L + + Y+ +
Sbjct: 492 REQKKETERIEKERMR---RLMAE----DEEGYRKLIDQKKDKRLAYL-LQQTDEYVANL 543
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSM-ASHFENE-MDETQTVS-----VVEKY 1045
+ + + KE +K +K + +A+ M A + E +DE +S V++
Sbjct: 544 TELVYEHKAAQAAKEKKKKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPVKVIQTE 603
Query: 1046 EPAV-ENED--ESDQAKHYLESNEKYYLMAHSIKE 1077
V + D +S Q + +LE N Y + S E
Sbjct: 604 TGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSE 638
Score = 39 (18.8 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 359 GKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRG 395
G G IGP P E +S +S + ++ T G
Sbjct: 571 GDAEGMGAIGPDGEPIDE--NSQMSELPVKVIQTETG 605
Score = 37 (18.1 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 655 GINKPMNSEINSWTGIGSQNEV-PR 678
G + P +S++ +W + EV PR
Sbjct: 610 GTDAPKSSQLEAWLEMNPGYEVAPR 634
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 1263 (449.7 bits), Expect = 2.2e-147, Sum P(4) = 2.2e-147
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 657 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 713
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 714 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 773
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 774 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 832
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 833 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 891 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 946
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 947 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1007 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1065
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1066 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1125
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1126 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1185
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1186 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1228
Score = 118 (46.6 bits), Expect = 2.2e-147, Sum P(4) = 2.2e-147
Identities = 34/139 (24%), Positives = 65/139 (46%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 451 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 510
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 511 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENA 570
Query: 1046 E-------PAVENEDESDQ 1057
E P E DES Q
Sbjct: 571 EGGESALGPDGEPIDESSQ 589
Score = 56 (24.8 bits), Expect = 2.2e-147, Sum P(4) = 2.2e-147
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 173 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 55 (24.4 bits), Expect = 2.6e-132, Sum P(2) = 2.6e-132
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 164 ANSQSQERQKDGKKASTKRKRGDSSISH--EPQNENPQQLDSRNSVVNPRKGKM 215
A + ++R++ KKA + G+S++ EP +E+ Q D V + GK+
Sbjct: 552 AAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKV 605
Score = 50 (22.7 bits), Expect = 2.2e-147, Sum P(4) = 2.2e-147
Identities = 35/131 (26%), Positives = 51/131 (38%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VS+ +P ++ FP+E G Q + +G+ +G G P
Sbjct: 52 SVSHPMPTMGSTDFPQE------GMHQMHK--PIDGI-HDKGIVEDIHCGSMKGTGMRPP 102
Query: 335 FPGNMMIETPMQQ-------PTVSSLGA--NAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
PG ++PM Q P S LGA + + G P P P + G AL P
Sbjct: 103 HPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPT-PPQMPPSQPG--ALIPG 159
Query: 386 ESQLFST-NRG 395
+ Q S NRG
Sbjct: 160 DPQAMSQPNRG 170
Score = 41 (19.5 bits), Expect = 2.0e-146, Sum P(4) = 2.0e-146
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 251 GNMSSI-LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASG 298
G+M +R G + P+D + P S PE V SG
Sbjct: 92 GSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSG 140
Score = 38 (18.4 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGA 229
++Q+ ++ ++++ +PQ + PQ + P N+ PG + G
Sbjct: 216 QQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQ--QPALVNYNRPSGPGP-ELSGP 272
Query: 230 EQSNFNMVPSGG 241
VP+ G
Sbjct: 273 STPQKLPVPAPG 284
Score = 38 (18.4 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 28/126 (22%), Positives = 53/126 (42%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ--LDSRN-------SVVNPRKGKMNK 217
Q Q++Q+ ++ ++++ +PQ + QQ L + N + P +
Sbjct: 220 QQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLP 279
Query: 218 VDAPGGF---SVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVT--EKP-- 270
V APGG + A Q VP G + G S +L+++Q+ ++ +KP
Sbjct: 280 VPAPGGRPSPAPPAAAQPPAAAVP-GPSVPQ--PAPGQPSPVLQLQQKQSRISPIQKPQG 336
Query: 271 LDSANV 276
LD +
Sbjct: 337 LDPVEI 342
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 1263 (449.7 bits), Expect = 5.9e-147, Sum P(4) = 5.9e-147
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 662 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 718
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 719 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 778
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 779 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 837
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 838 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 895
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 896 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 951
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 952 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1011
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1012 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1070
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1071 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1130
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1131 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1190
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1191 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1233
Score = 121 (47.7 bits), Expect = 5.9e-147, Sum P(4) = 5.9e-147
Identities = 35/139 (25%), Positives = 68/139 (48%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 456 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 515
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 516 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENA 575
Query: 1046 E---PAV--ENE--DESDQ 1057
E PA+ + E DES Q
Sbjct: 576 EGGEPALGPDGEPIDESSQ 594
Score = 56 (24.8 bits), Expect = 5.9e-147, Sum P(4) = 5.9e-147
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 167 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 200
Score = 46 (21.3 bits), Expect = 6.6e-146, Sum P(4) = 6.6e-146
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 525 PSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSI 584
P S PG P G+ + ++ P G S ++ ++ KM+ + G P ++
Sbjct: 143 PPSQPGALIP----GDPQAMNQ-PNRGPSPFSPVQLHQLRAQILAYKMLAR-GQPLPETL 196
Query: 585 H-AEERKQLATGKLEAEMQSQETAESQAFFTSASQQ 619
A + K+ G + + Q Q+ + Q QQ
Sbjct: 197 QLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQ 232
Score = 43 (20.2 bits), Expect = 5.9e-147, Sum P(4) = 5.9e-147
Identities = 31/137 (22%), Positives = 49/137 (35%)
Query: 220 APGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNS 279
+PG G+ S P + H S G+ QEG + KP+D +
Sbjct: 30 SPGPGPSPGSVHSMMGPSPGPPSVSHPLSTMGSAD----FPQEGMHQLHKPMDGIHDKGI 85
Query: 280 VPRASNSKFPEEVEVSASGQQQGNSLSSAN-GVLASRGTWNQNRAGFPFERSQVPRFPGN 338
V E+V G +G S+ + G+ + +Q+ G+ P +
Sbjct: 86 V---------EDVHC---GSMKGTSMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEH 133
Query: 339 MMIETPMQQPTVSSLGA 355
+ TP Q P S GA
Sbjct: 134 VSSPTPPQMPP-SQPGA 149
Score = 38 (18.4 bits), Expect = 1.0e-141, Sum P(3) = 1.0e-141
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ + ++ +PQ + QQ
Sbjct: 221 QQQQQQQQQQQQQQQPQQPQQQAQAQPQQQQQQQ 254
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 1263 (449.7 bits), Expect = 3.2e-146, Sum P(4) = 3.2e-146
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 639 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 695
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 696 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 755
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 756 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 814
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 815 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 872
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 873 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 928
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 929 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 988
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 989 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1047
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1048 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1107
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1108 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1167
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1168 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1210
Score = 118 (46.6 bits), Expect = 3.2e-146, Sum P(4) = 3.2e-146
Identities = 34/139 (24%), Positives = 65/139 (46%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 433 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 492
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 493 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENA 552
Query: 1046 E-------PAVENEDESDQ 1057
E P E DES Q
Sbjct: 553 EGGESALGPDGEPIDESSQ 571
Score = 56 (24.8 bits), Expect = 3.2e-146, Sum P(4) = 3.2e-146
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 172 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 205
Score = 56 (24.8 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 164 ANSQSQERQKDGKKASTKRKRGDSSISH--EPQNENPQQLDSRNSVVNPRKGKM 215
A + ++R++ KKA + G+S++ EP +E+ Q D V + GK+
Sbjct: 534 AAKEKKKRRRKKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKV 587
Score = 53 (23.7 bits), Expect = 5.6e-143, Sum P(3) = 5.6e-143
Identities = 48/205 (23%), Positives = 68/205 (33%)
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQG 302
H S+ G + +R G + P+D + P S PE V +S G
Sbjct: 89 HCGSMKG---TAMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPTPP 145
Query: 303 NSLSSANGVL--ASRGTWNQ-NRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANA 357
S G L NQ NR PF Q+ + ++ + QP +L
Sbjct: 146 QMPPSQPGPLIPGDPQAMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 205
Query: 358 FGK-VHGAMPIGPSSYPTGELGSSALSPVESQLFSTNR----GDETSAMLSSGKVLEHDG 412
GK M P P + P + L + NR G E S S + L
Sbjct: 206 QGKRTLPGMQQQPPPQPQPQPQPQQPQPQQQALVNYNRPSGPGPELSGP-SPPQKLPVPA 264
Query: 413 SSNTLSDANRAVQVGRQNSVPGTAM 437
S S A A +VPG ++
Sbjct: 265 PSGRPSPAPPAAAPPPAAAVPGPSV 289
Score = 39 (18.8 bits), Expect = 3.2e-146, Sum P(4) = 3.2e-146
Identities = 33/131 (25%), Positives = 51/131 (38%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VS+ +P ++ FP+E G Q + +G + +G G + P
Sbjct: 52 SVSHPMPSMGSADFPQE------GMHQMHK--PMDG-MHDKGV-EDIHCGSMKGTAMRPP 101
Query: 335 FPGNMMIETPMQQ-------PTVSSLGA--NAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
PG ++PM Q P S LGA + + G P P P + G L P
Sbjct: 102 HPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPT-PPQMPPSQPGP--LIPG 158
Query: 386 ESQLFST-NRG 395
+ Q + NRG
Sbjct: 159 DPQAMNQPNRG 169
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 1241 (441.9 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 253/538 (47%), Positives = 352/538 (65%)
Query: 1061 YLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGL 1120
Y+ YY AHSI+E + EQP L+GGKL+ YQM GL+W+VSLYNN+LNGILADEMGL
Sbjct: 1681 YVSKAHSYYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGL 1740
Query: 1121 GKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRR 1180
GKT+Q IAL+ YL+E K + GPF W E + WAP++ +++Y G R+
Sbjct: 1741 GKTIQTIALVSYLIEVKKNNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKS 1800
Query: 1181 LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL-KH 1239
F+E I +FN ++TTYEY++ D+ LSKI+W+Y+I+DEGHR+KN + KL+ L
Sbjct: 1801 KFEEFIAPGQFNAVVTTYEYIIK--DKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTS 1858
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
Y S +RLLLTGTP IF+ EDF QWFN PF G+
Sbjct: 1859 YSSRYRLLLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEK----IEM 1914
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ-KL--LMK---- 1352
II RLH+VLRPF+LRRLK +VE +LP+K+E++++C+ SA+Q K+ L+K
Sbjct: 1915 NEEEQLLIIQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGV 1974
Query: 1353 -RVEENLGSIGNSK-GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 1410
++ + G+ GN K + + N+ ++LR ICNHPYL + +E + I + ++R G
Sbjct: 1975 SKLASSGGADGNPKLAKGLKNTYVQLRKICNHPYL--FYDDEYN--IDDN----LIRYAG 2026
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
K ++LDRLLPKLKA HRVL FS MT+L++++E + +K Y++LRLDG T +RG L++
Sbjct: 2027 KFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLE 2086
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
FN +S +FIF+LS RAGG+G+NLQ ADTVIIFD+DWNPQ+DLQAQ RAHRIGQK+ V
Sbjct: 2087 LFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVR 2146
Query: 1531 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
VLR T +VEE + A A K + + I AG F+N ++ DR++ LE L+ + + E
Sbjct: 2147 VLRLVTAHSVEESILARANFKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMTQDETAE 2204
Score = 138 (53.6 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 35/137 (25%), Positives = 73/137 (53%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
F +I H + E K + + + K V + +E+ +++ +R +RE++ LK ND
Sbjct: 1304 FLGQILNHSKEFKEYHANKMTKIKKMTKRVTAYFILQEKKEQQQREREERERLRALKTND 1363
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK-SMASHFENE--MDETQTVSVV 1042
YL++++ K+ R+ +L +T ++L K+ LQ+ K S+ ENE + Q ++
Sbjct: 1364 ESKYLKLLEQTKNQRLRELFDQTNEFLDKISHLLQKEKISIQEKEENEEAIRRQQDQLLL 1423
Query: 1043 EKYEPAVENEDESDQAK 1059
++ E E E+++ Q++
Sbjct: 1424 QQKEK--EGEEDAKQSE 1438
Score = 77 (32.2 bits), Expect = 1.6e-144, Sum P(5) = 1.6e-144
Identities = 37/193 (19%), Positives = 75/193 (38%)
Query: 139 YQASGTHRSSQSFDHESPSSLDTRSANSQSQ-ERQKDGKKASTKRKRGDSSISHEPQNEN 197
+Q H+ +Q F + +Q+Q + Q + + + + + ++ QN+N
Sbjct: 525 HQQQHQHQQNQQFQQPQHQHFNQNQNQNQNQNQNQNQNQNQNQNQNQNQNQNQNQNQNQN 584
Query: 198 PQQLDSRNSVVNPRKGKMNKVDAPGGF-------SVKGAEQSNFNMVPSGGQM--EHFSS 248
QQ+ ++ P + K+ AP F V A+ + + E++
Sbjct: 585 QQQMKAQQP--QPIQQKLL---APPAFFFTQEQLDVIRAQVYAYKCFMQRKPITEEYYGI 639
Query: 249 LSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
L S + Q +V + +++NV+N+ SNS S + N++++
Sbjct: 640 LQLAHPSTF-INQSSPSVVQMNTNNSNVNNNNNNNSNSNMNNNNMNSNNNSNMNNNMNNN 698
Query: 309 NGVLASRGTWNQN 321
NGV N N
Sbjct: 699 NGVNNMNNNMNNN 711
Score = 68 (29.0 bits), Expect = 1.1e-141, Sum P(4) = 1.1e-141
Identities = 29/175 (16%), Positives = 70/175 (40%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
++ S S+++ + NS + + + ++++++ N N + ++ +N
Sbjct: 671 NNNSNSNMNNNNMNSNNNSNMNNNMNNNNGVNNMNNNMNNNNTNNNSNNNNMNHNNMNNN 730
Query: 212 KGKMNKVDAPGGFS--VKGAEQSNFNMVP-SGGQMEHFSSLSGNMSSILRVKQEGQNVTE 268
G N ++ + + SN N SG + +++S N +I N+
Sbjct: 731 NGMNNNMNNNNNNNNNMNNNTNSNINSNNNSGNSTNNSANISNNNGNI-----GNNNINN 785
Query: 269 KPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRA 323
++ N +N+ +NS ++SG NS +++N + N N +
Sbjct: 786 ISYNNNNSNNNSNNNNNSNNNSNNNNNSSGNSNSNSNNNSNSNNNNNNNNNNNNS 840
Score = 56 (24.8 bits), Expect = 2.4e-144, Sum P(6) = 2.4e-144
Identities = 36/225 (16%), Positives = 84/225 (37%)
Query: 78 PLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHD 137
P+T+ + G SS + ++S G + K + N IE ++ + S
Sbjct: 41 PITTNNTTGGSSVS----NNSNGGGNATEEKPKPSYNMPLSIEQQIQNQ--MMQS---QQ 91
Query: 138 YYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
Y QA H++ Q + + Q Q++Q+ ++ +++ + Q +
Sbjct: 92 YQQAQQQHQAQQQAQQHAQQQQQLQQQQQQQQQQQQQQQQQQQQQQHQQQHQQQQLQQQQ 151
Query: 198 PQQLDSRNSVVNPRKGKMNKVDAPG-GFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSI 256
Q + +N MN +++P S +Q ++++ Q + +
Sbjct: 152 QQHHHQQQQNINTPP--MN-INSPNINKSAPQQQQQQYHLLLQQQQQQQ---------QL 199
Query: 257 LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
L+ +Q+ Q + ++ L + + + ++ QQQ
Sbjct: 200 LQQQQQQQQLQQQQLQQQQLQQQQAQLQQQQAQQQQAQQQQQQQQ 244
Score = 54 (24.1 bits), Expect = 6.9e-138, Sum P(3) = 6.9e-138
Identities = 26/168 (15%), Positives = 59/168 (35%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQE--RQKDGKKASTKRKRGDSSISHEP 193
H Q ++ Q++ P + T+ Q+Q+ +Q ++ + ++ + +P
Sbjct: 909 HQQSQLLQQPQAQQTYQQTQPQTQQTQQTQPQTQQTYQQPQAQQTYQQTQQAQQTQQTQP 968
Query: 194 QNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNM 253
Q + Q ++ V ++ + + P ++ + Q + L
Sbjct: 969 QTQQQTQPQPQSQVQPEQQQQQTQAQQPQPQQIQQPQHQQSQQQSENLQQQQPEHLQQQQ 1028
Query: 254 SSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
Q+ +N+ +P S P S E+ + S QQQ
Sbjct: 1029 QQQQEHLQQPENLQPQPQQQ---SQQQPEQVQSS--EQTQ-SMQAQQQ 1070
Score = 53 (23.7 bits), Expect = 8.8e-138, Sum P(3) = 8.8e-138
Identities = 32/207 (15%), Positives = 74/207 (35%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
+ ++ +S + ++ S +S + NS S + + G+++ ++ N +
Sbjct: 801 NNSNNNSNNNNNSSGNSNSNSNNNSNSNNNNNNNNNNNNSNTSGNNNNNNNNNNNIYNNI 860
Query: 202 DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
S N + ++ ++ AP G ++ + M+ ++ + S +L+ Q
Sbjct: 861 ASLNQQYQMMQQQLQQIQAPPGQTLNQQQLIQQQMLHQK-LLQQQRLIQHQQSQLLQQPQ 919
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN 321
Q + + + P+ + + + + QQ T Q
Sbjct: 920 AQQTYQQTQPQTQQTQQTQPQTQQTYQQPQAQQTYQQTQQAQQTQQTQPQ-----TQQQT 974
Query: 322 RAGFPFERSQVPRFPGNMMIETPMQQP 348
+ P +SQV P +T QQP
Sbjct: 975 Q---PQPQSQVQ--PEQQQQQTQAQQP 996
Score = 52 (23.4 bits), Expect = 5.2e-140, Sum P(4) = 5.2e-140
Identities = 26/182 (14%), Positives = 68/182 (37%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDG-KKASTKRKRGDSSISHEPQNENPQQ 200
S ++ ++ + + + S+++ N+ + +T +++++H N N
Sbjct: 674 SNSNMNNNNMNSNNNSNMNNNMNNNNGVNNMNNNMNNNNTNNNSNNNNMNHNNMNNN--- 730
Query: 201 LDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSL-SGNMSSILRV 259
+ N+ +N N ++ ++ S + S + ++ + N+++I
Sbjct: 731 -NGMNNNMNNNNNNNNNMNNNTNSNINSNNNSGNSTNNSANISNNNGNIGNNNINNISYN 789
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWN 319
N + +S N SN+ +S + S S N+ ++ N + N
Sbjct: 790 NNNSNNNSNNNNNSNNNSNNNNNSSGNSNSNSNNNSNSNNNNNNNNNNNNSNTSGNNNNN 849
Query: 320 QN 321
N
Sbjct: 850 NN 851
Score = 49 (22.3 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 769 DNSVRNGI-SLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQK--RKLLVEQNWILKQQ 825
+N++ N I SL + + L P P T++++ ++ Q +KLL +Q I QQ
Sbjct: 853 NNNIYNNIASLNQQYQMMQQQLQQIQAP-PGQTLNQQQLIQQQMLHQKLLQQQRLIQHQQ 911
Score = 46 (21.3 bits), Expect = 4.8e-137, Sum P(3) = 4.8e-137
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 146 RSSQSFDH-ESPSSLDTR-SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDS 203
+ Q +H + P +L + SQ Q Q + + + ++PQ ++ Q
Sbjct: 1027 QQQQQQEHLQQPENLQPQPQQQSQQQPEQVQSSEQTQSMQAQQQPEQNQPQQQSEQITQQ 1086
Query: 204 RNSVVNPRK 212
+ S +P++
Sbjct: 1087 QQSQQDPQQ 1095
Score = 46 (21.3 bits), Expect = 7.1e-135, Sum P(5) = 7.1e-135
Identities = 23/114 (20%), Positives = 51/114 (44%)
Query: 962 KERIHREKIDRIQREKINLLKINDVEGYLRMVQ--DAKS---DRVNKLLKETEKYLQKLG 1016
++++ RE +D + K L K D++ L Q + K+ D + ++L ++++ +
Sbjct: 1262 QKQLRREVLDA-EISKSKLKKSKDLKQKLDQQQSNEEKNRFKDFLGQILNHSKEFKEYHA 1320
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYL 1070
+K+ + K M T + EK E +E ++ + ++E YL
Sbjct: 1321 NKMTKIKKMTKRV------TAYFILQEKKEQQQREREERERLRALKTNDESKYL 1368
Score = 45 (20.9 bits), Expect = 6.1e-137, Sum P(3) = 6.1e-137
Identities = 18/131 (13%), Positives = 62/131 (47%)
Query: 700 KSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKF 759
+SF ++ + N N++ ++ + P++ ++ S + G + +++ PK
Sbjct: 13 QSFINNNNNNNSGDNNNNNNNNNNIVGTPITTNNTTGGSSVSNNSNGG--GNATEEKPKP 70
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQN 819
S + + ++ ++N + + ++Q ++ + H A ++ ++ + Q+++ +Q
Sbjct: 71 SY-NMPLSIEQQIQNQM-MQSQQYQQAQQQHQAQQQAQQHAQQQQQLQQQQQQQQQQQQQ 128
Query: 820 WILKQQKTKQR 830
+QQ+ + +
Sbjct: 129 QQQQQQQQQHQ 139
Score = 44 (20.5 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 145 HRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
H+ QSF + + ++ + N+ + G +T G SS+S+
Sbjct: 9 HQHDQSFINNNNNNNSGDNNNNNNNNNNIVGTPITTNNTTGGSSVSN 55
Score = 43 (20.2 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 14/70 (20%), Positives = 29/70 (41%)
Query: 605 ETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEI 664
+ A F +S + +T + + N N+ N ++ N + N MN+ +
Sbjct: 641 QLAHPSTFINQSSPSVVQMNTNNS-NVNNNNNNNSNSNMNNNNMN----SNNNSNMNNNM 695
Query: 665 NSWTGIGSQN 674
N+ G+ + N
Sbjct: 696 NNNNGVNNMN 705
Score = 43 (20.2 bits), Expect = 4.6e-139, Sum P(4) = 4.6e-139
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 150 SFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
S+++ + ++ + NS + + ++ ++S S+ N N +S S N
Sbjct: 787 SYNNNNSNNNSNNNNNSNNNSNNNNNSSGNSNSNSNNNSNSNNNNNNNNNNNNSNTSGNN 846
Query: 210 PRKGKMN 216
N
Sbjct: 847 NNNNNNN 853
Score = 43 (20.2 bits), Expect = 4.3e-128, Sum P(3) = 4.3e-128
Identities = 14/80 (17%), Positives = 38/80 (47%)
Query: 978 INLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQ 1037
IN LK + + + + Q + D NK+L++ +Q+ + +Q+ + + + + Q
Sbjct: 322 INFLK--NPQPFSSLNQQ-ELDLYNKILRQHNILVQRKLAMVQQQQQQQQQQQQQQQQPQ 378
Query: 1038 TVSVVEKYEPAVENEDESDQ 1057
++++P + + + Q
Sbjct: 379 Q----QQHQPQTQQQQQQQQ 394
Score = 42 (19.8 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 585 HAEERKQLATGKLEAEMQSQETAESQ 610
HA++++QL + + + Q Q+ + Q
Sbjct: 108 HAQQQQQLQQQQQQQQQQQQQQQQQQ 133
Score = 42 (19.8 bits), Expect = 1.6e-144, Sum P(5) = 1.6e-144
Identities = 18/87 (20%), Positives = 35/87 (40%)
Query: 632 TNPVNDVENGHLFIGRANVASVT--GINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHE 689
TN ++ N + IG N+ +++ N NS N+ + S N +
Sbjct: 765 TNNSANISNNNGNIGNNNINNISYNNNNSNNNSNNNNNSNNNSNNNNNSSGNSNSNSNNN 824
Query: 690 LVKDNDPTQFKSFGHSGASGNQHANSH 716
+N+ + +S SGN + N++
Sbjct: 825 SNSNNNNNNNNNNNNSNTSGNNNNNNN 851
Score = 42 (19.8 bits), Expect = 1.3e-136, Sum P(3) = 1.3e-136
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ--NENPQQLDS 203
+ SQ + SS T+S +Q Q Q ++ S + + S +PQ N+ P + S
Sbjct: 1047 QQSQQQPEQVQSSEQTQSMQAQQQPEQNQPQQQSEQITQQQQS-QQDPQQINQQPNAVPS 1105
Query: 204 R----NSVVNP 210
S+ P
Sbjct: 1106 LVTTPTSINTP 1116
Score = 41 (19.5 bits), Expect = 1.6e-136, Sum P(3) = 1.6e-136
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 770 NSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQ 829
N+ G S++ + + T+ P P Y M +Q + + +Q +QQ Q
Sbjct: 45 NNTTGGSSVSNNSNGGGNA--TEEKPKPSYNMPLSIEQQIQNQMMQSQQYQQAQQQHQAQ 102
Query: 830 RMS 832
+ +
Sbjct: 103 QQA 105
Score = 41 (19.5 bits), Expect = 3.0e-128, Sum P(4) = 3.0e-128
Identities = 17/128 (13%), Positives = 55/128 (42%)
Query: 959 HKRKERIHREKIDRIQREKINL-LKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGS 1017
H++++ I+ ++ I IN + Y ++Q + + +LL++ ++ Q
Sbjct: 156 HQQQQNINTPPMN-INSPNINKSAPQQQQQQYHLLLQQQQQQQ--QLLQQQQQQQQLQQQ 212
Query: 1018 KLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKE 1077
+LQ+ + + + + Q ++ + + + Q + + ++ + + +++
Sbjct: 213 QLQQQQLQQQQAQLQQQQAQQQQAQQQQQQQQQAQQAQQQQQQQQQQQQQQHQQTNMMQQ 272
Query: 1078 SVSEQ-PT 1084
+Q PT
Sbjct: 273 QQQQQVPT 280
Score = 40 (19.1 bits), Expect = 2.0e-145, Sum P(7) = 2.0e-145
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 693 DNDPTQFKSFGHSGASGNQHANSHLSSFS 721
+N+ + S ++ +SGN ++NS+ +S S
Sbjct: 799 NNNNSNNNSNNNNNSSGNSNSNSNNNSNS 827
Score = 40 (19.1 bits), Expect = 1.1e-142, Sum P(6) = 1.1e-142
Identities = 10/69 (14%), Positives = 27/69 (39%)
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
+ Q + + Q Q++Q+ ++ ++ + H+ N+N Q ++N
Sbjct: 497 QQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQHQQNQQFQQPQHQHFNQNQNQNQNQN 556
Query: 206 SVVNPRKGK 214
N + +
Sbjct: 557 QNQNQNQNQ 565
Score = 40 (19.1 bits), Expect = 4.5e-125, Sum P(2) = 4.5e-125
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 158 SLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
S+ + N ++ RQ+D K K G+ Q+E ++ N V
Sbjct: 1403 SIQEKEENEEAIRRQQDQLLLQQKEKEGEEDAK---QSEKISIMNITNDV 1449
Score = 39 (18.8 bits), Expect = 2.2e-139, Sum P(4) = 2.2e-139
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 778 LTTEQDEEDKSLHTDSP--PAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQR 830
L +Q+ S + SP P+ + M ++ ++ Q+++ +Q +QQ+ +Q+
Sbjct: 463 LQHQQNMNVTSPNMTSPNIPSTQQLMQQQLLLQQQQQQQQQQQQQQQQQQQQQQQ 517
Score = 39 (18.8 bits), Expect = 5.7e-125, Sum P(2) = 5.7e-125
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVD 219
D N+Q + + ++ +++ ++ N N ++ N+ N G KV
Sbjct: 1490 DDNDDNNQMLDDNNNNNNSNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNGNKPKVS 1549
Query: 220 A--PGGF 224
GG+
Sbjct: 1550 INNQGGY 1556
Score = 38 (18.4 bits), Expect = 1.8e-142, Sum P(6) = 1.8e-142
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
++Q+ ++ ++++ H+PQ + QQ
Sbjct: 361 QQQQQQQQQQQQQQQQPQQQQHQPQTQQQQQ 391
Score = 38 (18.4 bits), Expect = 1.5e-138, Sum P(4) = 1.5e-138
Identities = 8/75 (10%), Positives = 30/75 (40%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
+ +G+ ++ ++ + + + +++ + NS + + ++ S S+
Sbjct: 759 NNSGNSTNNSANISNNNGNIGNNNINNISYNNNNSNNNSNNNNNSNNNSNNNNNSSGNSN 818
Query: 192 EPQNENPQQLDSRNS 206
N N ++ N+
Sbjct: 819 SNSNNNSNSNNNNNN 833
Score = 38 (18.4 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1361 IGNSKGRSVHNSVMELRNICN 1381
+ NSKG +NS+ + CN
Sbjct: 2771 LNNSKGNHNNNSLSPPASPCN 2791
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 1384 YLSQLHAEEVDTLIPKHYLP 1403
YL L E + L P + LP
Sbjct: 2638 YLQNLFTELFNKLFPNNQLP 2657
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 1251 (445.4 bits), Expect = 2.4e-144, Sum P(3) = 2.4e-144
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 676 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 733
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 734 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 793
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 852
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 853 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 910
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 911 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 966
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1026
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1027 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1142
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1143 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1202
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1203 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1250
Score = 119 (46.9 bits), Expect = 2.4e-144, Sum P(3) = 2.4e-144
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 467 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 526
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 527 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 586
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 587 QTPAIGPDGE 596
Score = 77 (32.2 bits), Expect = 2.4e-144, Sum P(3) = 2.4e-144
Identities = 40/145 (27%), Positives = 57/145 (39%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGADPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSA 528
QLRAQ + + G P HL++A+ P G + + V S+ P +
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPGMQ---PQMPALPPPSV-SATGPGPS 233
Query: 529 PGVTAP-YGRLGNARETDRIPPGGS 552
PG P Y R + PPG S
Sbjct: 234 PGPAPPNYSRPHGMGGPNMPPPGPS 258
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 569 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 626
Score = 52 (23.4 bits), Expect = 1.0e-141, Sum P(3) = 1.0e-141
Identities = 30/120 (25%), Positives = 40/120 (33%)
Query: 263 GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT----- 317
G P+D S P V ASG G +SS G G
Sbjct: 105 GMGPPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQAL 162
Query: 318 WNQNRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANAFGK--VHGAMPIGPSSYP 373
QNR PF ++Q+ + +M + QP L GK + G P P+ P
Sbjct: 163 GQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQPQMPALPP 222
Score = 39 (18.8 bits), Expect = 1.2e-138, Sum P(4) = 1.2e-138
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 636 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 675
Score = 38 (18.4 bits), Expect = 3.1e-140, Sum P(3) = 3.1e-140
Identities = 19/70 (27%), Positives = 26/70 (37%)
Query: 320 QNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGA----MPI-GPSSYPT 374
Q + P + Q+P P + T P+ N + + HG MP GPS P
Sbjct: 205 QGKRPMPGMQPQMPALPPPSVSATG-PGPSPGPAPPN-YSRPHGMGGPNMPPPGPSGVPP 262
Query: 375 GELGSSALSP 384
G G P
Sbjct: 263 GMPGQPPGGP 272
Score = 37 (18.1 bits), Expect = 1.2e-138, Sum P(4) = 1.2e-138
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 560 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 617
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 618 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 646
Score = 37 (18.1 bits), Expect = 3.5e-133, Sum P(3) = 3.5e-133
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 622 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 679
Query: 590 KQL 592
K++
Sbjct: 680 KKI 682
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 1264 (450.0 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
Identities = 271/588 (46%), Positives = 367/588 (62%)
Query: 1017 SKLQ-EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSI 1075
S+L+ + K + E+ E ++E A ++ D+ ++ ++ YY +AH+I
Sbjct: 626 SRLEADEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAI 682
Query: 1076 KESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
E V +Q + L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME
Sbjct: 683 TERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLME 742
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLL 1195
K GP+ W E + WAP + KI Y G P RR L + + KFNVLL
Sbjct: 743 HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLL 801
Query: 1196 TTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXX 1254
TTYEY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 802 TTYEYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 859
Query: 1255 XXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQV 1314
IF S F QWFN PF G+ II RLH+V
Sbjct: 860 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKV 915
Query: 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR-- 1367
LRPF+LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+
Sbjct: 916 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 975
Query: 1368 --SVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLP 1420
++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LP
Sbjct: 976 AKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1034
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +F
Sbjct: 1035 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1094
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQAADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1095 IFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1154
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1155 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1202
Score = 118 (46.6 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
Identities = 34/139 (24%), Positives = 65/139 (46%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 424 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 483
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 484 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENA 543
Query: 1046 E-------PAVENEDESDQ 1057
E P E DES Q
Sbjct: 544 EGMASGLGPDGEPIDESSQ 562
Score = 61 (26.5 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 447 GKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
G V P PF QL QLRAQ L + G +P+ L L +
Sbjct: 157 GDPQVMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPENLQLAV 204
Score = 45 (20.9 bits), Expect = 3.1e-142, Sum P(3) = 3.1e-142
Identities = 27/117 (23%), Positives = 41/117 (35%)
Query: 251 GNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQGNSLSSA 308
G+M + +R G + P+D + P S PE V +S G S
Sbjct: 92 GSMKT-MRPPHPGMGPPQSPMDQHSKGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMTPSQ 150
Query: 309 NGVL--ASRGTWNQ-NRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANAFGK 360
G + NQ NR PF Q+ + ++ + QP +L GK
Sbjct: 151 PGPIIPGDPQVMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPENLQLAVQGK 207
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 1263 (449.7 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 664 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 720
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 721 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 780
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 839
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 840 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 953
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 954 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1014 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1072
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1235
Score = 121 (47.7 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 35/139 (25%), Positives = 68/139 (48%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 458 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 517
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 518 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEENA 577
Query: 1046 E---PAV--ENE--DESDQ 1057
E PA+ + E DES Q
Sbjct: 578 EGGEPALGPDGEPIDESSQ 596
Score = 56 (24.8 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 173 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 49 (22.3 bits), Expect = 7.1e-143, Sum P(3) = 7.1e-143
Identities = 29/123 (23%), Positives = 41/123 (33%)
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQG 302
H S+ G +R G + P+D + P S PE V +S G
Sbjct: 90 HCGSMKGTS---MRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPTPP 146
Query: 303 NSLSSANGVL--ASRGTWNQ-NRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANA 357
S G L NQ NR PF Q+ + ++ + QP +L
Sbjct: 147 QMPPSQPGTLIPGDLQAMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 358 FGK 360
GK
Sbjct: 207 QGK 209
Score = 37 (18.1 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ + ++ +PQ + QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQQQQ 255
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 1263 (449.7 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 664 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 720
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 721 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 780
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 839
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 840 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 953
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 954 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1014 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1072
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1235
Score = 121 (47.7 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 35/139 (25%), Positives = 68/139 (48%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 458 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 517
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 518 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEENA 577
Query: 1046 E---PAV--ENE--DESDQ 1057
E PA+ + E DES Q
Sbjct: 578 EGGEPALGPDGEPIDESSQ 596
Score = 56 (24.8 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 173 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 49 (22.3 bits), Expect = 7.1e-143, Sum P(3) = 7.1e-143
Identities = 29/123 (23%), Positives = 41/123 (33%)
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQG 302
H S+ G +R G + P+D + P S PE V +S G
Sbjct: 90 HCGSMKGTS---MRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPTPP 146
Query: 303 NSLSSANGVL--ASRGTWNQ-NRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANA 357
S G L NQ NR PF Q+ + ++ + QP +L
Sbjct: 147 QMPPSQPGTLIPGDLQAMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 358 FGK 360
GK
Sbjct: 207 QGK 209
Score = 37 (18.1 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ + ++ +PQ + QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQQQQ 255
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 1263 (449.7 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 641 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 697
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 698 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 816
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 817 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 930
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 931 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 990
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 991 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1049
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 117 (46.2 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 25/98 (25%), Positives = 53/98 (54%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 435 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 494
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK 1023
EGY +++ K R+ LL++T++Y+ L + + E K
Sbjct: 495 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHK 532
Score = 57 (25.1 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
+G P PF QL QLRAQ L + G +P+ L L +
Sbjct: 158 SGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 51 (23.0 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 46/201 (22%), Positives = 68/201 (33%)
Query: 251 GNMSSI-LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQGNSLSS 307
G+M +R G + P+D + P S PE V +S G S
Sbjct: 92 GSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPS 151
Query: 308 ANGVLAS---RGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANAFGK-- 360
G L S + NR PF Q+ + ++ + QP +L GK
Sbjct: 152 QPGPLISGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRT 211
Query: 361 VHGAMPIGPSSYPTGELGSSALSPVESQLFSTNR----GDETSAMLSSGKVLEHDGSSNT 416
+ G P + A P + L + NR G E S S+ + L S
Sbjct: 212 LPGMQQQQPQHQQPPQPQPQAQQPQQQALVNYNRPSGPGPELSGP-STPQKLPVPAPSGR 270
Query: 417 LSDANRAVQVGRQNSVPGTAM 437
S A A +VPG ++
Sbjct: 271 PSPAPPAAAQPPAAAVPGPSV 291
Score = 42 (19.8 bits), Expect = 1.0e-141, Sum P(3) = 1.0e-141
Identities = 48/211 (22%), Positives = 73/211 (34%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VS+ +P ++ FP+E G Q + +G + +G G P
Sbjct: 52 SVSHPMPTMGSADFPQE------GMHQMHK--PIDG-MHDKGIVEDIHCGSMKGTGMRPP 102
Query: 335 FPGNMMIETPMQQ-------PTVSSLGA--NAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
PG ++PM Q P S LGA + + G P P P + G +S
Sbjct: 103 HPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPT-PPQMPPSQPGP-LISGD 160
Query: 386 ESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRD 445
+ NRG + V H + L+ + R +P T L R
Sbjct: 161 PQAMSQPNRGPSPFS-----PVQLHQLRAQILAYK----MLARGQPLPETLQLAVQGKR- 210
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLV 476
T Q P P + Q +Q + Q LV
Sbjct: 211 TLPGMQQQQPQHQQPPQPQPQAQQPQQQALV 241
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 1263 (449.7 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 641 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 697
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 698 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 816
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 817 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 930
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 931 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 990
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 991 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1049
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 117 (46.2 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 25/98 (25%), Positives = 53/98 (54%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 435 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 494
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK 1023
EGY +++ K R+ LL++T++Y+ L + + E K
Sbjct: 495 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHK 532
Score = 57 (25.1 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
+G P PF QL QLRAQ L + G +P+ L L +
Sbjct: 158 SGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 51 (23.0 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 46/201 (22%), Positives = 68/201 (33%)
Query: 251 GNMSSI-LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQGNSLSS 307
G+M +R G + P+D + P S PE V +S G S
Sbjct: 92 GSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPS 151
Query: 308 ANGVLAS---RGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANAFGK-- 360
G L S + NR PF Q+ + ++ + QP +L GK
Sbjct: 152 QPGPLISGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRT 211
Query: 361 VHGAMPIGPSSYPTGELGSSALSPVESQLFSTNR----GDETSAMLSSGKVLEHDGSSNT 416
+ G P + A P + L + NR G E S S+ + L S
Sbjct: 212 LPGMQQQQPQHQQPPQPQPQAQQPQQQALVNYNRPSGPGPELSGP-STPQKLPVPAPSGR 270
Query: 417 LSDANRAVQVGRQNSVPGTAM 437
S A A +VPG ++
Sbjct: 271 PSPAPPAAAQPPAAAVPGPSV 291
Score = 42 (19.8 bits), Expect = 1.0e-141, Sum P(3) = 1.0e-141
Identities = 48/211 (22%), Positives = 73/211 (34%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VS+ +P ++ FP+E G Q + +G + +G G P
Sbjct: 52 SVSHPMPTMGSADFPQE------GMHQMHK--PIDG-MHDKGIVEDIHCGSMKGTGMRPP 102
Query: 335 FPGNMMIETPMQQ-------PTVSSLGA--NAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
PG ++PM Q P S LGA + + G P P P + G +S
Sbjct: 103 HPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPT-PPQMPPSQPGP-LISGD 160
Query: 386 ESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRD 445
+ NRG + V H + L+ + R +P T L R
Sbjct: 161 PQAMSQPNRGPSPFS-----PVQLHQLRAQILAYK----MLARGQPLPETLQLAVQGKR- 210
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLV 476
T Q P P + Q +Q + Q LV
Sbjct: 211 TLPGMQQQQPQHQQPPQPQPQAQQPQQQALV 241
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGADPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.7e-133, Sum P(3) = 2.7e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 50 (22.7 bits), Expect = 1.7e-141, Sum P(3) = 1.7e-141
Identities = 30/140 (21%), Positives = 45/140 (32%)
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNM--VPSGGQME--HFSSLSGNMSSILRVKQEGQN 265
P G PGG+ Q + M + G + ++ + G + G
Sbjct: 50 PSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKG--MGMRSGAHAGMG 107
Query: 266 VTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT-----WNQ 320
P+D S P V ASG G +SS G G Q
Sbjct: 108 PPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQ 165
Query: 321 NRAGFPFERSQVPRFPGNMM 340
NR PF ++Q+ + +M
Sbjct: 166 NRGPTPFNQNQLHQLRAQIM 185
Score = 38 (18.4 bits), Expect = 1.5e-134, Sum P(3) = 1.5e-134
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPP 795
+ + G P +S +G S E++EE++ PP
Sbjct: 644 EMNPGYEVAPRSDSEESG-SEEEEEEEEEEQPQPAQPP 680
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 630 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPNLPVEEK 687
Query: 590 KQL 592
K++
Sbjct: 688 KKI 690
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
Score = 37 (18.1 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 9/62 (14%), Positives = 32/62 (51%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRG----DSSISHEPQNENPQQLDSRNSVVNP 210
+P S D+ + S+ +E +++ ++ + + +P +++ ++D+R+ + N
Sbjct: 652 APRS-DSEESGSEEEEEEEEEEQPQPAQPPNLPVEEKKKIPDPDSDDVSEVDARHIIENA 710
Query: 211 RK 212
++
Sbjct: 711 KQ 712
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGSDPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 51 (23.0 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 30/140 (21%), Positives = 46/140 (32%)
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNM--VPSGGQME--HFSSLSGNMSSILRVKQEGQN 265
P G PGG+ Q + M + G + ++ + G + G
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKG--MGMRSGAHTGMG 107
Query: 266 VTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT-----WNQ 320
P+D S P V ASG G +SS G G+ Q
Sbjct: 108 PPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQ 165
Query: 321 NRAGFPFERSQVPRFPGNMM 340
NR PF ++Q+ + +M
Sbjct: 166 NRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 683
Score = 37 (18.1 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 630 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 687
Query: 590 KQL 592
K++
Sbjct: 688 KKI 690
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGSDPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 51 (23.0 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 30/140 (21%), Positives = 46/140 (32%)
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNM--VPSGGQME--HFSSLSGNMSSILRVKQEGQN 265
P G PGG+ Q + M + G + ++ + G + G
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKG--MGMRSGAHTGMG 107
Query: 266 VTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT-----WNQ 320
P+D S P V ASG G +SS G G+ Q
Sbjct: 108 PPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQ 165
Query: 321 NRAGFPFERSQVPRFPGNMM 340
NR PF ++Q+ + +M
Sbjct: 166 NRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 683
Score = 37 (18.1 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 630 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 687
Query: 590 KQL 592
K++
Sbjct: 688 KKI 690
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGSDPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 51 (23.0 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 30/140 (21%), Positives = 46/140 (32%)
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNM--VPSGGQME--HFSSLSGNMSSILRVKQEGQN 265
P G PGG+ Q + M + G + ++ + G + G
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKG--MGMRSGAHTGMG 107
Query: 266 VTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT-----WNQ 320
P+D S P V ASG G +SS G G+ Q
Sbjct: 108 PPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQ 165
Query: 321 NRAGFPFERSQVPRFPGNMM 340
NR PF ++Q+ + +M
Sbjct: 166 NRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 683
Score = 37 (18.1 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 630 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 687
Query: 590 KQL 592
K++
Sbjct: 688 KKI 690
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGSDPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 49 (22.3 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 294 VSASGQQQGNSLSSANGVLASRGT-----WNQNRAGFPFERSQVPRFPGNMM 340
V ASG G +SS G G+ QNR PF ++Q+ + +M
Sbjct: 134 VPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 683
Score = 37 (18.1 bits), Expect = 2.1e-137, Sum P(4) = 2.1e-137
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 630 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 687
Query: 590 KQL 592
K++
Sbjct: 688 KKI 690
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGADPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 49 (22.3 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 21/83 (25%), Positives = 28/83 (33%)
Query: 263 GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT----- 317
G P+D S P V ASG G +SS G G
Sbjct: 105 GMGPPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQAL 162
Query: 318 WNQNRAGFPFERSQVPRFPGNMM 340
QNR PF ++Q+ + +M
Sbjct: 163 GQQNRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 1.2e-134, Sum P(3) = 1.2e-134
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPP 795
+ + G P +S +G S E++EE++ PP
Sbjct: 644 EMNPGYEVAPRSDSEESG-SEEEEEEEEEEQPQAAQPP 680
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 1251 (445.4 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Score = 119 (46.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 594
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 595 QTPAIGPDGE 604
Score = 65 (27.9 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGADPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
QLRAQ + + G P HL++A+ P G
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPG 212
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 634
Score = 49 (22.3 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 21/83 (25%), Positives = 28/83 (33%)
Query: 263 GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT----- 317
G P+D S P V ASG G +SS G G
Sbjct: 105 GMGPPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQAL 162
Query: 318 WNQNRAGFPFERSQVPRFPGNMM 340
QNR PF ++Q+ + +M
Sbjct: 163 GQQNRGPTPFNQNQLHQLRAQIM 185
Score = 39 (18.8 bits), Expect = 1.2e-134, Sum P(3) = 1.2e-134
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPP 795
+ + G P +S +G S E++EE++ PP
Sbjct: 644 EMNPGYEVAPRSDSEESG-SEEEEEEEEEEQPQAAQPP 680
Score = 37 (18.1 bits), Expect = 1.9e-134, Sum P(3) = 1.9e-134
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 568 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 625
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 626 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 654
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 1263 (449.7 bits), Expect = 7.4e-143, Sum P(4) = 7.4e-143
Identities = 269/583 (46%), Positives = 362/583 (62%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 641 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 697
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 698 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 816
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 817 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 930
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 931 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 990
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 991 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1049
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 73 (30.8 bits), Expect = 7.4e-143, Sum P(4) = 7.4e-143
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 976 EKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDE 1035
EK L D EGY +++ K R+ LL++T++Y+ L + + E K + E +
Sbjct: 485 EKDRLQMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 544
Query: 1036 TQTVSVVEKYE-------PAVENEDESDQ 1057
+ E E P E DES Q
Sbjct: 545 RRKKKAEENAEGGESALGPDGEPIDESSQ 573
Score = 56 (24.8 bits), Expect = 7.4e-143, Sum P(4) = 7.4e-143
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 173 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 55 (24.4 bits), Expect = 2.6e-132, Sum P(2) = 2.6e-132
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 164 ANSQSQERQKDGKKASTKRKRGDSSISH--EPQNENPQQLDSRNSVVNPRKGKM 215
A + ++R++ KKA + G+S++ EP +E+ Q D V + GK+
Sbjct: 536 AAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKV 589
Score = 52 (23.4 bits), Expect = 7.4e-143, Sum P(4) = 7.4e-143
Identities = 34/131 (25%), Positives = 53/131 (40%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VS+ +P ++ FP+E G Q + +G + +G G + P
Sbjct: 52 SVSHPMPTMGSADFPQE------GMHQMHK--PMDG-MHDKGVVEDIHCGSMKGTAMRPP 102
Query: 335 FPGNMMIETPMQQ-------PTVSSLGA--NAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
PG ++PM Q P S LGA + + G P P P + G+ L P
Sbjct: 103 HPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPT-PPQMPPSQPGT--LIPG 159
Query: 386 ESQLFS-TNRG 395
+ Q S +NRG
Sbjct: 160 DPQAMSQSNRG 170
Score = 46 (21.3 bits), Expect = 1.7e-137, Sum P(3) = 1.7e-137
Identities = 27/123 (21%), Positives = 41/123 (33%)
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQG 302
H S+ G + +R G + P+D + P S PE V +S G
Sbjct: 90 HCGSMKG---TAMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPTPP 146
Query: 303 NSLSSANGVLAS---RGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANA 357
S G L + NR PF Q+ + ++ + QP +L
Sbjct: 147 QMPPSQPGTLIPGDPQAMSQSNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 358 FGK 360
GK
Sbjct: 207 QGK 209
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 1328 (472.5 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 284/668 (42%), Positives = 407/668 (60%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVE 987
S I + R D+ K +R + ++ + H ER +++ ++ +E++ LK ND E
Sbjct: 611 SAINQYNRRQDK----KNKRLKFGHRLIAT-HTNLERDEQKRAEKKAKERLQALKANDEE 665
Query: 988 GYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQE----AKSMA-SHFENEMDETQTVSVV 1042
Y++++ K R+ LL++T +L L +++ K M SH + +E +S+V
Sbjct: 666 AYIKLLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDDLSMV 725
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWL 1102
K + E +D+ D SN YY +AH IKE + +QP+ L GG L++YQ+ GL+W+
Sbjct: 726 PKMKDE-EYDDDDDN------SNVDYYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWM 778
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
VSL+NN LNGILADEMGLGKT+Q I+L+ YL E KN RGP+ W SE W
Sbjct: 779 VSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKW 838
Query: 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDE 1222
AP + I + G P ER+ + KI +F+V+LTT+EY++ +R LSK++W ++IIDE
Sbjct: 839 APTLRTISFKGSPNERKAK-QAKIRAGEFDVVLTTFEYIIK--ERALLSKVKWVHMIIDE 895
Query: 1223 GHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQW 1281
GHR+KNA KL+ L HY + +RL+LTGTP IFNS + F +W
Sbjct: 896 GHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEW 955
Query: 1282 FNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRC 1341
FN PF + G D +I RLH+VLRPF+LRRLK VE ELP+K+E++V+C
Sbjct: 956 FNTPFANTGGQ--DKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKC 1013
Query: 1342 EASAYQKLLMKRVEEN----LGSIGNSK--G-RSVHNSVMELRNICNHPYLSQLHAEEVD 1394
+ SA Q+++ +++ + +G N K G R +N +M+L+ ICNHP++ + E D
Sbjct: 1014 KMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFE---EVED 1070
Query: 1395 TLIP-KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRY 1453
+ P + I R+ GK E+LDR+LPKLKAT HRVL F MT+++D+MED+L + +Y
Sbjct: 1071 QINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKY 1130
Query: 1454 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVD 1513
LRLDGHT +R L+ FN DS + F+LS RAGG+G+NLQ ADTVIIFDTDWNP D
Sbjct: 1131 LRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQD 1190
Query: 1514 LQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR 1573
LQAQ RAHRIGQK +V +LR T +VEE + A KL + + I AG FDN +++E++
Sbjct: 1191 LQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250
Query: 1574 REYLESLL 1581
L SLL
Sbjct: 1251 EALLRSLL 1258
Score = 71 (30.1 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
Identities = 43/185 (23%), Positives = 77/185 (41%)
Query: 92 QCAGSSSQVAGVVKDS--KAGLAENEMSKIEPFTSSRPPVAPSGA--GHDYYQASGTHRS 147
Q G S +V +S +A L N S I S+ P +AP+ G++ + S H+S
Sbjct: 59 QQQGISGSQQNIVPNSSDQAELPNNASSHIS--ASASPHLAPNMQLNGNETFSTSA-HQS 115
Query: 148 SQSFDHESPSSLDTRSANSQSQERQKD-GKKASTK-----RKRGDSSISHEPQNENPQQL 201
+ P L++ N+ +RQ G +T G+++ + +P N N L
Sbjct: 116 P-IMQTQMP--LNSNGGNNMLPQRQSSVGSLNATNFSPTPANNGENA-AEKPDNSNHNNL 171
Query: 202 DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEH--FSSLSGNMSSILRV 259
+ NS + P+ + + + + G+ Q N M P QM+ F + + +
Sbjct: 172 NLNNSELQPQNRSLQEHNIQDSNVMPGS-QINSPM-PQQAQMQQAQFQAQQAQQAQQAQQ 229
Query: 260 KQEGQ 264
Q+ Q
Sbjct: 230 AQQAQ 234
Score = 62 (26.9 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 33/138 (23%), Positives = 55/138 (39%)
Query: 67 LDMEALKSSRLPLTSGSQ--IGDSSTAQCAGSSSQVAGVVKDSKAGLAENEM--SKIEPF 122
L + R P +Q + + Q G++S D+ +GL N SK E F
Sbjct: 295 LSLSEFARRRQPTDQNNQSNLNGGNNTQQPGTNSHYNNTNTDNVSGLTRNAPLDSKDENF 354
Query: 123 TSSRPPVAPSGAGHDYYQASGT-HRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTK 181
S V+P+G + +GT ++SQ+ S S+ +E + A T
Sbjct: 355 AS----VSPAGPSSVHNAKNGTLDKNSQTV-----SGTPITQTESKKEENETISNVAKTA 405
Query: 182 RKRGDSSISHEPQNENPQ 199
+S+ +H QN P+
Sbjct: 406 P---NSNKTHTEQNNPPK 420
Score = 56 (24.8 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASN-SKFPEEVE--VSASGQQQGNSLSSANGVLASRG 316
+QE Q ++ S + N VP +S+ ++ P +SAS + N L
Sbjct: 51 RQELQMQRQQQGISGSQQNIVPNSSDQAELPNNASSHISASASPH----LAPNMQLNGNE 106
Query: 317 TWNQNRAGFPFERSQVPRFP--GNMMIETPMQQPTVSSLGANAF 358
T++ + P ++Q+P GN M+ P +Q +V SL A F
Sbjct: 107 TFSTSAHQSPIMQTQMPLNSNGGNNML--PQRQSSVGSLNATNF 148
Score = 41 (19.5 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 60/309 (19%), Positives = 112/309 (36%)
Query: 538 LGNARETDRIP-PGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSI--HAEERKQLAT 594
+G+ T+ P P + + D+S+ NL + + P + S+ H + +
Sbjct: 140 VGSLNATNFSPTPANNGENAAEKPDNSNHN--NLNLNNSELQPQNRSLQEHNIQDSNVMP 197
Query: 595 GKL-------EAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVN--DVENGHLFI 645
G +A+MQ + QA +QQ + A R P+ E L
Sbjct: 198 GSQINSPMPQQAQMQQAQFQAQQAQQAQQAQQAQQAQARLQQGRRLPMTMFTAEQSELL- 256
Query: 646 GRANVASVTGI--NKPMNSEINSWTGIGSQNEVP--RRPLPAPTVQHELVKDNDPT-QFK 700
+A + S+ + KP+ E + S N P +R L + + E + PT Q
Sbjct: 257 -KAQITSLKCLVNRKPIPFEFQAVIQ-KSINHPPDFKRMLLSLS---EFARRRQPTDQNN 311
Query: 701 SFGHSGASGNQH--ANSHLSSFSIRD-----QWKPVSGTDSDRYSLIPVKDAS--GMLRH 751
+G + Q NSH ++ + + + P+ D + S+ P +S
Sbjct: 312 QSNLNGGNNTQQPGTNSHYNNTNTDNVSGLTRNAPLDSKDENFASVSPAGPSSVHNAKNG 371
Query: 752 TSQDDPKFSDGSRTIPVDNSVRNG--ISLTTEQDEEDKSLHTD--SPPAPKYTMSEKWIM 807
T + + G+ ++ IS + HT+ +PP P+ + +
Sbjct: 372 TLDKNSQTVSGTPITQTESKKEENETISNVAKTAPNSNKTHTEQNNPPKPQKPVPLNVLQ 431
Query: 808 DMQKRKLLV 816
D K + V
Sbjct: 432 DQYKEGIKV 440
Score = 41 (19.5 bits), Expect = 1.9e-140, Sum P(3) = 1.9e-140
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 249 LSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNS 286
L+GN + Q T+ PL+S +N +P+ +S
Sbjct: 102 LNGNETFSTSAHQSPIMQTQMPLNSNGGNNMLPQRQSS 139
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 1239 (441.2 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 266/601 (44%), Positives = 370/601 (61%)
Query: 1006 KETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESN 1065
++ E+ Q + +E K + ++ E ++E + V++E + A ++
Sbjct: 684 EDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEHAKQDVDDE-YGNSA--FIRGL 740
Query: 1066 EKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQ 1125
+ YY +AH++ E V +Q + L G+L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q
Sbjct: 741 QSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 800
Query: 1126 VIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185
IALI YLME K GPF W E + WAP + K+ Y G P RR F
Sbjct: 801 TIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRA-FLPI 859
Query: 1186 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSH 1244
+ KFNVL+TTYEY++ D+ L+K++W Y+I+DEGHR+KN CKL L HY +
Sbjct: 860 LRSGKFNVLVTTYEYIIK--DKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPR 917
Query: 1245 RLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXX 1304
R+LLTGTP IF S F QWFN PF G+
Sbjct: 918 RVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEET 973
Query: 1305 XXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--G 1359
II RLH+VLRPF+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L G
Sbjct: 974 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1033
Query: 1360 SIGNSKGR----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------R 1407
S + KG+ ++ N++M+LR ICNHPY+ Q H EE +H + IV R
Sbjct: 1034 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGSDLYR 1089
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GK E+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG
Sbjct: 1090 ASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGM 1149
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
L+ FN +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+
Sbjct: 1150 LLKNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1209
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE 1587
+V VLR TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++
Sbjct: 1210 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQD 1269
Query: 1588 E 1588
E
Sbjct: 1270 E 1270
Score = 117 (46.2 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 26/107 (24%), Positives = 56/107 (52%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 493 YLNSILQHAKDFKEYHRSITAKMQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 552
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENE 1032
EGY +++ K R+ LL++T++Y+ L ++L A A +++
Sbjct: 553 EEGYRKLIDQKKDKRLAYLLQQTDEYVANL-TELVRAHKAAQALKDK 598
Score = 69 (29.3 bits), Expect = 5.0e-142, Sum P(3) = 5.0e-142
Identities = 75/297 (25%), Positives = 105/297 (35%)
Query: 281 PRASNSKFPEEVEVSASGQQQGNSLSSANGVLA-SRGTWN-------QNRAGFPFERSQV 332
PR S P + G G S SA+G++ S G + Q +G+P +
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPSSGHPLPPQGPSGYPQDNMHQ 71
Query: 333 PRFPGNMMIET--PMQQP--TVSSLGANAFGKVHGAMPIGPS-------SYPTGELGSS- 380
P M E P Q + +G G H M PS YP+ LG S
Sbjct: 72 MHKPMEGMHEKGIPEDQRYGQMKGMGMRQGG--HSGMGPPPSPMDQHSQGYPS-PLGGSD 128
Query: 381 -ALSPVESQLFSTNRGDETSAMLSSGK--VLEHDGSSNTLSDANRAVQVGRQNSVPGTAM 437
A SPV + G + M+ SG + G ++ NR+ G V G
Sbjct: 129 HAPSPVPAN------GPPSGPMMPSGPGAMPMEGGDPQAMAQQNRS---GGAGGVAGPGP 179
Query: 438 LRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGN 497
+ + G + P PF + QL QLRAQ + + G P HL++A+
Sbjct: 180 --SGGPPNAGGPGGAGGPT----PFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAVQG 232
Query: 498 IFPREGGNVDGSRRELVDTMKVQSSNDPS-SAPGVTAP-YGRLGNARETDRIPPGGS 552
P G G + Q + P PG P Y R + PPG S
Sbjct: 233 KRPMPGMQ-QGMPN--MPPASGQGAGPPGPGVPGPGGPNYNRPHGMVGPNMPPPGPS 286
Score = 51 (23.0 bits), Expect = 3.9e-140, Sum P(3) = 3.9e-140
Identities = 13/70 (18%), Positives = 34/70 (48%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFS-VKGAEQSNFNMVPS-GGQMEHFSSLS 250
PQ ++P Q V++ ++ ++ + P G V+ ++ + + +++ +L
Sbjct: 348 PQTQSPGQPAQPPMVLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLP 407
Query: 251 GNMSSILRVK 260
G+++ LR K
Sbjct: 408 GSLAGDLRTK 417
Score = 48 (22.0 bits), Expect = 9.2e-135, Sum P(3) = 9.2e-135
Identities = 20/99 (20%), Positives = 48/99 (48%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL-RMVQDAKSDRVN 1002
K+E R + ++ E +R+ ID+ + +++ L + + Y+ + + ++ +
Sbjct: 534 KKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYL-LQQTDEYVANLTELVRAHKAA 592
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENE-MDETQTVS 1040
+ LK+ +K +K + E + A + E +DET +S
Sbjct: 593 QALKDKKKKKKKKKPENAEGGAPALGPDGEPLDETSQMS 631
Score = 47 (21.6 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 158 SLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRK 212
S D+ S + E + +A T+ K+ + +P +E+ ++D+R+ + + ++
Sbjct: 675 SEDSGSDEEEDDEEEPQPSQAPTEEKK----VIPDPDSEDVSEVDARHIIEHAKQ 725
Score = 43 (20.2 bits), Expect = 2.7e-139, Sum P(3) = 2.7e-139
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 348 PTVSSLGANAFGKVHGAM-----PIGPSSYPTGELGSSALSP 384
P V G + + HG + P GPS P G G P
Sbjct: 259 PGVPGPGGPNYNRPHGMVGPNMPPPGPSGVPPGLQGQPTNGP 300
Score = 39 (18.8 bits), Expect = 8.2e-134, Sum P(3) = 8.2e-134
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 653 VTGINKPMNSEINSWTGIGSQNEV-PR 678
+TG++ P ++++W + EV PR
Sbjct: 646 LTGMDAPKAGQLDTWLEMNPGYEVAPR 672
Score = 37 (18.1 bits), Expect = 1.3e-133, Sum P(3) = 1.3e-133
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 659 PMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDND 695
P + +S + +E +P APT + +++ D D
Sbjct: 671 PRSDSEDSGSDEEEDDEEEPQPSQAPTEEKKVIPDPD 707
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 1247 (444.0 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 267/583 (45%), Positives = 359/583 (61%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 664 EEKILLDPNSKEVSEKDARQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 720
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMG GKT+Q IALI YLME K
Sbjct: 721 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLN 780
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP KI Y G P RR L + + KFN LLTTYEY
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQ-LRSGKFNALLTTYEY 839
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 840 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 953
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 954 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1014 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1072
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
A+A++KL V + I AG FD +S+ +RR +L+++L ++ E
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENE 1235
Score = 121 (47.7 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 35/139 (25%), Positives = 68/139 (48%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + ++K V +H ER +++ +RI++E++ L D
Sbjct: 458 YLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAED 517
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
EGY +++ K R+ LL++T++Y+ L + + E K + E + + E
Sbjct: 518 EEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEENA 577
Query: 1046 E---PAV--ENE--DESDQ 1057
E PA+ + E DES Q
Sbjct: 578 EGGEPALGPDGEPIDESSQ 596
Score = 56 (24.8 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 461 PFKEQQLKQLRAQCLVFLAFRNGL-VPKKLHLEI 493
PF QL QLRAQ L + G +P+ L L +
Sbjct: 173 PFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Score = 42 (19.8 bits), Expect = 1.9e-140, Sum P(3) = 1.9e-140
Identities = 28/123 (22%), Positives = 41/123 (33%)
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE--VSASGQQQG 302
H S+ G +R G + P+D + P S PE V +S G
Sbjct: 90 HCGSMKGTS---MRPPHPGVGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISGGGPTPP 146
Query: 303 NSLSSANGVL--ASRGTWNQ-NRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANA 357
S G L NQ +R PF Q+ + ++ + QP +L
Sbjct: 147 QMPPSQPGTLIPGDLQAMNQPDRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 358 FGK 360
GK
Sbjct: 207 QGK 209
Score = 42 (19.8 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
S S+S ++D ++ S+ R+ + I +P ++ + D+R +
Sbjct: 642 SEESESDYEEEDEEEESS-RQETEEKILLDPNSKEVSEKDARQII 685
Score = 37 (18.1 bits), Expect = 6.3e-140, Sum P(3) = 6.3e-140
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ + ++ +PQ + QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQQQQ 255
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 1228 (437.3 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 267/588 (45%), Positives = 364/588 (61%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 676 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 733
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 734 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 793
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 852
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 853 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 910
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 911 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 966
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--L---GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1026
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1027 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPGSEYF 1141
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
I LLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1142 I-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1200
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1201 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1248
Score = 119 (46.9 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 467 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 526
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 527 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 586
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 587 QTPAIGPDGE 596
Score = 77 (32.2 bits), Expect = 6.3e-142, Sum P(3) = 6.3e-142
Identities = 40/145 (27%), Positives = 57/145 (39%)
Query: 409 EHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLK 468
EH S S + Q+ +S PG A L + G+ + TP F + QL
Sbjct: 128 EHASSPVPASGPSSGPQM---SSGPGGAPLDGADPQALGQQNRGPTP------FNQNQLH 178
Query: 469 QLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSA 528
QLRAQ + + G P HL++A+ P G + + V S+ P +
Sbjct: 179 QLRAQIMAYKMLARGQ-PLPDHLQMAVQGKRPMPGMQ---PQMPALPPPSV-SATGPGPS 233
Query: 529 PGVTAP-YGRLGNARETDRIPPGGS 552
PG P Y R + PPG S
Sbjct: 234 PGPAPPNYSRPHGMGGPNMPPPGPS 258
Score = 53 (23.7 bits), Expect = 5.7e-131, Sum P(3) = 5.7e-131
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 569 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 626
Score = 52 (23.4 bits), Expect = 2.7e-139, Sum P(3) = 2.7e-139
Identities = 30/120 (25%), Positives = 40/120 (33%)
Query: 263 GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGT----- 317
G P+D S P V ASG G +SS G G
Sbjct: 105 GMGPPPSPMDQH--SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQAL 162
Query: 318 WNQNRAGFPFERSQVPRFPGNMMIETPMQ--QPTVSSLGANAFGK--VHGAMPIGPSSYP 373
QNR PF ++Q+ + +M + QP L GK + G P P+ P
Sbjct: 163 GQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQPQMPALPP 222
Score = 39 (18.8 bits), Expect = 3.1e-136, Sum P(4) = 3.1e-136
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 636 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 675
Score = 38 (18.4 bits), Expect = 8.1e-138, Sum P(3) = 8.1e-138
Identities = 19/70 (27%), Positives = 26/70 (37%)
Query: 320 QNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGA----MPI-GPSSYPT 374
Q + P + Q+P P + T P+ N + + HG MP GPS P
Sbjct: 205 QGKRPMPGMQPQMPALPPPSVSATG-PGPSPGPAPPN-YSRPHGMGGPNMPPPGPSGVPP 262
Query: 375 GELGSSALSP 384
G G P
Sbjct: 263 GMPGQPPGGP 272
Score = 37 (18.1 bits), Expect = 3.1e-136, Sum P(4) = 3.1e-136
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 560 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 617
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 618 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 646
Score = 37 (18.1 bits), Expect = 9.3e-131, Sum P(3) = 9.3e-131
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 622 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 679
Query: 590 KQL 592
K++
Sbjct: 680 KKI 682
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 1253 (446.1 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 262/577 (45%), Positives = 361/577 (62%)
Query: 1032 EMDETQTVSVVEKYEPAVENEDESD---QAK----HYLESNEKYYLMAHSIKESVSEQPT 1084
E T T +K + +ED D +AK Y + YY +AH+I E V EQ +
Sbjct: 707 EEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVEQAS 766
Query: 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFX 1144
+ G L+EYQ+ GL WLVSLYNN LNGILADEMGLGKT+Q I+L+ YLM+ K GP+
Sbjct: 767 IMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYL 826
Query: 1145 XXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204
W E WAP + + Y G P+ RR L + ++ KFNVLLTTYEY++
Sbjct: 827 IIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIK- 884
Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXXXXXX 1263
D+ L+KIQW Y+IIDEGHR+KN CKL L HY + +RLLLTGTP
Sbjct: 885 -DKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWAL 943
Query: 1264 XXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRL 1323
IF S F QWFN PF + G+ II RLH+VLRPF+LRRL
Sbjct: 944 LNFLLPSIFKSCSTFEQWFNAPFATTGEK----VELNEEETILIIRRLHKVLRPFLLRRL 999
Query: 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGNSKGR-------SVHNSVM 1374
K +VE++LP+K+E +++C+ SA Q++L K ++ L + G+ KG+ ++ N+++
Sbjct: 1000 KKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIV 1059
Query: 1375 ELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKATDHRVLF 1431
+LR +CNHP++ Q E+ H + P + R+ GK E+LDR+LPKLKAT+HRVL
Sbjct: 1060 QLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLL 1119
Query: 1432 FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491
F MT+ + ++EDYL ++Q+ YLRLDG T DRG L+ KFN + S F+FLLS RAGG+
Sbjct: 1120 FCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGL 1179
Query: 1492 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551
G+NLQ ADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++ A+A +K
Sbjct: 1180 GLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYK 1239
Query: 1552 LGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
L + + I AG FD ++ +R+++L+++L + EE
Sbjct: 1240 LNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEE 1276
Score = 126 (49.4 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
F + + H + L E + + + +NK V H ER +++ +RI++E++ L D
Sbjct: 516 FLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAED 575
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK 1023
EGY +++ K R+ LL +T++Y+ L +++ K
Sbjct: 576 EEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHK 613
Score = 60 (26.2 bits), Expect = 3.9e-134, Sum P(3) = 3.9e-134
Identities = 30/133 (22%), Positives = 62/133 (46%)
Query: 932 AHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL- 990
A +E+ E +I++ER R + + E E +R+ ID+ + +++ L ++ + Y+
Sbjct: 552 AEREQKKEQERIEKERMR---RLMAE----DEEGYRKLIDQKKDKRLAFL-LSQTDEYIS 603
Query: 991 ---RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEP 1047
+MV+ K D++ K +E ++ +Q L + + E + V VVE+
Sbjct: 604 NLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGID-EGSIVADMRVHVVEQCTG 662
Query: 1048 AVENEDESDQAKH 1060
D++ KH
Sbjct: 663 KKLTGDDAPMLKH 675
Score = 56 (24.8 bits), Expect = 1.0e-133, Sum P(3) = 1.0e-133
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 997 KSDRVNKLLKETEKYLQKLGSKLQEAKSMAS-HFENEMDETQTVSVVEKYEPAVENEDES 1055
K ++ K +K+L+ L + LQ K + H N+ + V + E E +
Sbjct: 499 KQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKK 558
Query: 1056 DQAKHYLESNEKYYLMA 1072
+Q + +E LMA
Sbjct: 559 EQER--IEKERMRRLMA 573
Score = 45 (20.9 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ 194
D + G++ + E P++ + + +Q+ +D K TK K D E Q
Sbjct: 691 DEEDSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQ 748
Score = 37 (18.1 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 659 PMNSEINSWTGIGSQNEVPRRPLPAP 684
P S++ G G Q +VP +P P
Sbjct: 364 PPGSQVPQ-PGGGPQRQVPPAGMPMP 388
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 1341 (477.1 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 280/657 (42%), Positives = 402/657 (61%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRM 992
H L E +R+R + + + + H+ ER + +++R ++++ LK ND E YL++
Sbjct: 387 HGAELRETASQQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKANDEETYLKL 446
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKL-QEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
+ AK R++ LL +T+ +L++L + + Q+ ++ A + E D + E
Sbjct: 447 LGQAKDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDD-----DDDEDIASG 501
Query: 1052 EDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLN 1111
DE + + ++ YY +AH IKE ++EQP+ L GG L+EYQM GL+W++SLYNN LN
Sbjct: 502 SDEEGEGRRKID----YYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLN 557
Query: 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVY 1171
GILADEMGLGKT+Q I+LI +++E K + GPF W E WAP + +IVY
Sbjct: 558 GILADEMGLGKTIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVY 617
Query: 1172 CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC 1231
GPP R++ ++ I F VLLTTYEY++ DRP LSKI+W ++I+DEGHR+KN
Sbjct: 618 KGPPNARKQQ-QQNIRWGNFQVLLTTYEYIIK--DRPILSKIKWTHMIVDEGHRMKNTQS 674
Query: 1232 KLNADL-KHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNG 1290
KL++ L ++Y S +RL+LTGTP IF S + F +WFN PF + G
Sbjct: 675 KLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTG 734
Query: 1291 DNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL 1350
D +I RLH+VLRPF+LRRLK VE +LP+K ER+++C SA Q L
Sbjct: 735 GQ--DRMDLTEEEQLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKL 792
Query: 1351 MKRVE-ENLGSIGNSKG-----RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404
K++ N + + KG R + N +M+LR +CNHP++ + ++V+ + L
Sbjct: 793 NKQLATHNKMVVSDGKGGKVGMRGLSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDL-- 850
Query: 1405 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGD 1464
I R GK E+LDR+LPK KAT HRVL F MT+++++MED+L + +YLRLDG T D
Sbjct: 851 IWRTAGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 910
Query: 1465 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524
R L+ FN DS +F FLLS RAGG+G+NLQ ADTVIIFD+DWNP DLQAQ RAHRIG
Sbjct: 911 RSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 970
Query: 1525 QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
QK +V +LR T +VEE++ A+ KL + + I AG FDN ++ E+R L +LL
Sbjct: 971 QKNEVRILRLITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLL 1027
Score = 57 (25.1 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 29/137 (21%), Positives = 51/137 (37%)
Query: 545 DRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQ 604
+ + P S L + ++ K M + G D + + L+ + + Q Q
Sbjct: 9 NNVAPANMSLPANLTPQHIQETLQKFKQMQEQGVRQDDPEYLKAHNLLSAVQRQQAFQKQ 68
Query: 605 -ETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSE 663
+ A+ Q + QQ ++ S+ N VN+ RAN S T N +
Sbjct: 69 RQLAQQQQQLQAQRQQQQNGSSTQEAVAPNGVNN---------RAN-PSATSNNAVQ--D 116
Query: 664 INSWTGIGSQNEVPRRP 680
+ S + +G QN P
Sbjct: 117 VGSASALGQQNHQKGAP 133
Score = 51 (23.0 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
Identities = 32/153 (20%), Positives = 60/153 (39%)
Query: 149 QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN-SV 207
Q+F + + + +Q Q++Q G ++ ++ N D + S
Sbjct: 63 QAFQKQRQLAQQQQQLQAQRQQQQNGSSTQEAVAPNGVNNRANPSATSNNAVQDVGSASA 122
Query: 208 VNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQE---GQ 264
+ + + A G FS A+Q + Q+ F L+ N+ RV+Q+ +
Sbjct: 123 LGQQNHQKGAPAASGSFS---ADQ----LQTLRNQIMAFKMLTKNLQIPPRVQQQLFMSK 175
Query: 265 NVTEK-PLDSANVSNSVPRASNSKFPEEVEVSA 296
VT P D+ V+ SV + PE+ +A
Sbjct: 176 KVTTPAPSDNVAVAESVLEKFSQGKPEQAAATA 208
Score = 45 (20.9 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 413 SSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRA 472
S+N + D A +G+QN G S D ++ +Q F M K Q+ R
Sbjct: 110 SNNAVQDVGSASALGQQNHQKGAPAASGSFSADQLQTLRNQIMAFK-MLTKNLQIPP-RV 167
Query: 473 QCLVFLA 479
Q +F++
Sbjct: 168 QQQLFMS 174
Score = 38 (18.4 bits), Expect = 9.2e-139, Sum P(2) = 9.2e-139
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSAN--SQSQERQKDGKKASTKRKR 184
H+ + ++ H R A + +++Q+D +++ KRK+
Sbjct: 327 HEMFHYDNLGMTANRATHRRMKKQSLREARITEKLEKQQRDARESREKRKQ 377
Score = 37 (18.1 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 797 PKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQ 829
P+Y + + +Q+++ +Q + +QQ+ Q
Sbjct: 47 PEYLKAHNLLSAVQRQQAFQKQRQLAQQQQQLQ 79
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 1251 (445.4 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 483 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 540
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 541 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 600
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 601 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 659
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 660 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 717
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 718 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 773
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 774 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 833
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 834 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 889
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 890 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 949
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 950 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1009
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1010 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1057
Score = 119 (46.9 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 28/130 (21%), Positives = 64/130 (49%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + I H + E + + + + K V +H ER +++ +RI++E++ L D
Sbjct: 274 YLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 333
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSVVEK 1044
EGY +++ K R+ LL++T++Y+ L +++ K+ + + + + + E
Sbjct: 334 EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEG 393
Query: 1045 YEPAVENEDE 1054
PA+ + E
Sbjct: 394 QTPAIGPDGE 403
Score = 53 (23.7 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 168 SQERQKDGKKASTKRKRGDSSI---SHEPQNENPQQLDSRNSVVNPRKGK-MNKVDAP 221
++E++K KK + G + EP +E Q D V++ GK + DAP
Sbjct: 376 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAP 433
Score = 39 (18.8 bits), Expect = 2.2e-133, Sum P(3) = 2.2e-133
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 758 KFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAP 797
+ + G P +S +G E++EE++ P P
Sbjct: 443 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLP 482
Score = 37 (18.1 bits), Expect = 3.5e-133, Sum P(3) = 3.5e-133
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 530 GVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEER 589
G AP + G + PG + +S S+E E + ++ P ++ EE+
Sbjct: 429 GTDAP--KAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEK 486
Query: 590 KQL 592
K++
Sbjct: 487 KKI 489
Score = 37 (18.1 bits), Expect = 1.0e-131, Sum P(3) = 1.0e-131
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 584 IHAEERKQLATGKLEAEMQSQ-ETAESQA-FFTSASQQLESASTRGTLAITNPVNDVENG 641
+ + Q+A K + + + + E AE Q + L+ S L + V VE+G
Sbjct: 367 VRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVK--VIHVESG 424
Query: 642 HLFIGRANVASVTGINKPMNSEINSWTGIGSQNEV-PR 678
+ +TG + P ++ +W + EV PR
Sbjct: 425 KI---------LTGTDAPKAGQLEAWLEMNPGYEVAPR 453
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 1291 (459.5 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 276/637 (43%), Positives = 388/637 (60%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYL 1012
K + FH E+ +++I+R R+++ L+ +D YL+++ AK R+ LLK+T++YL
Sbjct: 746 KDIINFHAHLEKEEKKRIERSARQRLQALRADDEAAYLQLLDKAKDTRITHLLKQTDQYL 805
Query: 1013 QKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMA 1072
+ L ++ +S H N + + +E P + ED+ N Y+ +A
Sbjct: 806 ENLTRAVRIQQSNI-HSGNTSGKGSNSAELEA--P-ISEEDK----------NLDYFKVA 851
Query: 1073 HSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY 1132
H I E V EQP GG L++YQ+ GL W++SLYNN LNGILADEMGLGKT+Q IA I Y
Sbjct: 852 HRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITY 910
Query: 1133 LMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFN 1192
L+E KN +GPF W E WAP + KI Y GPP+ R+ L + +I FN
Sbjct: 911 LIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTL-QSQIRSSNFN 969
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGT 1251
VLLTT+EY++ DRP LS+I+W ++IIDEGHRIKN KL + L +Y S +RL+LTGT
Sbjct: 970 VLLTTFEYIIK--DRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGT 1027
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P IFNS + F +WFN PF + G D II RL
Sbjct: 1028 PLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQ--DKIGLNEEEALLIIKRL 1085
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ-KLLMKRVEENLGSIGNSKGRS-- 1368
H+VLRPF+ RRLK VE ELP+K+E++++C S Q KL + + + + KG++
Sbjct: 1086 HKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGI 1145
Query: 1369 --VHNSVMELRNICNHPYLSQLHAEEVDTLI-PKHYLPPIV-RLCGKLEMLDRLLPKLKA 1424
+ N+VM+L+ ICNHP++ E+V+ I P ++ R GK E+LDR+LPKL
Sbjct: 1146 KGLQNTVMQLKKICNHPFIF----EDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFL 1201
Query: 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484
T H+ L F MT+++ +MEDYL K ++YLRLDG T DR +L+ +FN S +IF+L
Sbjct: 1202 TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFML 1261
Query: 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544
S RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQ ++V +LR T +++EE +
Sbjct: 1262 STRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENI 1321
Query: 1545 RASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
+ A++KL + + I AG FDN ++ E+R +L SLL
Sbjct: 1322 LSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLL 1358
Score = 70 (29.7 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 68/301 (22%), Positives = 108/301 (35%)
Query: 149 QSFDHESPSSLDTRSANSQSQERQ--KDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
Q ++S D + N + Q+ G + K G ++ P + P + N
Sbjct: 61 QQMRNQSSEFPDAENTNLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPASNGPTPPNPGNG 120
Query: 207 VV---NPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRV--KQ 261
V NP MN +P ++ A VP M H + + S+ L+V Q
Sbjct: 121 NVGLNNP--SYMNSQASP---NIMNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKVYANQ 175
Query: 262 EGQNVTEKPL-----DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRG 316
Q T P D A++ + R +NS FP + NS S + +
Sbjct: 176 LSQQNTSNPTYHNAYDMASMMKNGSRMNNS-FPPTTPYPPANDTTVNS-SLPHSFASPSS 233
Query: 317 TWNQ-----NRAGFPFERSQVPRFPG-NMMIETPMQQPTVSSLGANAFGKVHGAMPIGPS 370
T+ Q +RA S F N+ MQQ G+ G++P+ PS
Sbjct: 234 TFEQPHTVQSRAPSVDTTSSSHSFSARNIPANVSMQQQ---------MGR-RGSIPVNPS 283
Query: 371 SYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQN 430
++ S++ P S L S G + A + L + NT ++ V VG
Sbjct: 284 TF------SASSPPSGSMLASPYNGYQNDAASFAHSKLPSSANPNTPFNSTATVDVGAAG 337
Query: 431 S 431
S
Sbjct: 338 S 338
Score = 65 (27.9 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 42/235 (17%), Positives = 81/235 (34%)
Query: 83 SQIGDSSTAQCAGSSS-QVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQA 141
+Q+ +T+ ++ +A ++K+ N P+ + S H +
Sbjct: 174 NQLSQQNTSNPTYHNAYDMASMMKNGSR--MNNSFPPTTPYPPANDTTVNSSLPHSFASP 231
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
S T + +PS +DT S++ R + ++ SI P +
Sbjct: 232 SSTFEQPHTVQSRAPS-VDTTSSSHSFSARNIPANVSMQQQMGRRGSIPVNPSTFSASSP 290
Query: 202 DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSN--FNM---VPSGGQMEHFSSLSGNMSSI 256
S + + +P G N + + + N FN V G HF +
Sbjct: 291 PSGSMLASPYNGYQNDAASFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPYPQPSNLDA 350
Query: 257 LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGV 311
+ K Q+ + P N++P ++ S P S S N++ SA +
Sbjct: 351 INAKTYFQSSSNSPAPYV-YRNNLPPSATSFQPSS---SRSPSVDPNTVKSAQHI 401
Score = 61 (26.5 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 45/222 (20%), Positives = 81/222 (36%)
Query: 511 RELVDTMKVQSSND-PSSAPGVTAPYGRLGNARETDRIPPGGS---SSGGFLEADSSSKE 566
R+ DT+ N+ P G+ GR + T P G+ ++ ++ + +S
Sbjct: 79 RKQQDTLPTTGFNNLPEGKAGMQTLPGRPASNGPTPPNPGNGNVGLNNPSYMNSQASPNI 138
Query: 567 VENLKMMDKSGPPADHSIHAEERKQLATGKLE--AEMQSQETAESQAF---FTSASQQLE 621
+ D S PPA +H + L+ A SQ+ + + + AS
Sbjct: 139 MNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKVYANQLSQQNTSNPTYHNAYDMASMMKN 198
Query: 622 SASTRGTLAITNP---VNDVE-NGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVP 677
+ + T P ND N L A+ +S + S S S +
Sbjct: 199 GSRMNNSFPPTTPYPPANDTTVNSSLPHSFASPSSTFEQPHTVQSRAPSVDTTSSSHSFS 258
Query: 678 RRPLPAP-TVQHELVKDND-PTQFKSFGHSGA-SGNQHANSH 716
R +PA ++Q ++ + P +F S SG+ A+ +
Sbjct: 259 ARNIPANVSMQQQMGRRGSIPVNPSTFSASSPPSGSMLASPY 300
Score = 56 (24.8 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 48/240 (20%), Positives = 96/240 (40%)
Query: 238 PSGGQMEH-FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSA 296
PSG + ++ + +S K P +S + S+ +P+ + A
Sbjct: 291 PSGSMLASPYNGYQNDAASFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPYPQPSNLDA 350
Query: 297 -SGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVS-SLG 354
+ + S S++ R + F S+ P N +++ P +S S
Sbjct: 351 INAKTYFQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNT-VKSAQHIPRMSPSPS 409
Query: 355 ANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTN-----RGDETSAMLSS--GKV 407
A+A K +P PT +L + L+ ++SQ+ + N G A+ + G+V
Sbjct: 410 ASAL-KTQSHVPSAKVP-PTSKLNHAQLAMLKSQIVAYNCLNSPNGQVPPAVQQAIFGRV 467
Query: 408 LEHDGSSNTLSDANRAVQVGRQNSVPG-TAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQ 466
G+SN +S + + Q +VP +++ + +RD + S+ P +P + Q+
Sbjct: 468 Y---GASNEVSPS-----MPFQQNVPQMSSVKKDTPTRDANMRT-SKAPYIQNIPNQFQR 518
Score = 48 (22.0 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 622 SASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPL 681
S+ G++ + +P N +N + + S N P NS + +G+ P
Sbjct: 288 SSPPSGSM-LASPYNGYQNDAASFAHSKLPSSANPNTPFNS--TATVDVGAAGS--HFPY 342
Query: 682 PAPTVQHELVKDNDPTQFKSFGHSGA 707
P P+ L N T F+S +S A
Sbjct: 343 PQPS---NLDAINAKTYFQSSSNSPA 365
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1282 (456.3 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 276/646 (42%), Positives = 396/646 (61%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
+ FH + + ++K++++ ++++ LK ND E YL+++ K R+ LL++T ++L
Sbjct: 658 INNFHNQTAKEEQKKLEKMAKQRLQALKSNDEEAYLKLLDHTKDTRITHLLEQTNQFLDS 717
Query: 1015 LGSKLQEAKSMASHFENEMDETQTVSVVEKYEPA-VENEDESDQAKHYLESNEKYYLMAH 1073
L +Q + A +N + + EPA VE D D+ + ++ YY +AH
Sbjct: 718 LALAVQSQQKEAQ--DNLAYSGRAI------EPASVEPLD--DEKREKID----YYNVAH 763
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
IKE V++QP+ L GG L+EYQ+ GL+W+VSL+NN LNGILADEMGLGKT+Q I+L+ YL
Sbjct: 764 RIKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYL 823
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNV 1193
+E K GPF W E WAP I KI Y G P +R+ + + I F +
Sbjct: 824 VEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK-VMQHDIRTGNFQL 882
Query: 1194 LLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL-KHYQSSHRLLLTGTP 1252
+LTT+EY++ D+ L +I+W ++IIDEGHR+KNA+ KL+ L ++Y S +RL+LTGTP
Sbjct: 883 VLTTFEYVIK--DKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTP 940
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
IFNS + F +WFN PF + G D +I RLH
Sbjct: 941 LQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQ--DKIELTEEETLLVIRRLH 998
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ-KLLMKRVEENLGSIGNSKGRSV-- 1369
+VLRPF+LRRLK VE +LP K+E++V+C++SA Q KL + + N+ G+ SV
Sbjct: 999 KVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPV 1058
Query: 1370 -----HNSVMELRNICNHPYLSQLHAEEVDTLI-PK-HYLPPIVRLCGKLEMLDRLLPKL 1422
+N +M+L+ ICNHP++ EEV+ LI P I R+ GK E+LD++LPK
Sbjct: 1059 TIKNANNQIMQLKKICNHPFVY----EEVENLINPNIETNDQIWRVAGKFELLDKVLPKF 1114
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KAT H+VL F MT+++++MED+L F+ +Y+RLDG T DR L+ FN DS +F F
Sbjct: 1115 KATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCF 1174
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR T +VEE
Sbjct: 1175 LLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEE 1234
Query: 1543 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
+ A KL + + I AG FDN ++AE++ L +L+ K++E
Sbjct: 1235 MILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIE--KEDE 1278
Score = 64 (27.6 bits), Expect = 2.8e-135, Sum P(2) = 2.8e-135
Identities = 93/464 (20%), Positives = 151/464 (32%)
Query: 258 RVKQE-GQNVTEKP--LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLAS 314
++KQ+ G V P + N++ + +F ++ + QQQ
Sbjct: 19 QMKQQYGDQVQLNPEFVKLTKFLNTL-KMQQQRFQQQYQQQQQQQQQQQQQQQQQQQQQQ 77
Query: 315 RGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPT 374
+ Q ++ SQ N +TP Q PT +N F + + Y
Sbjct: 78 QQQQQQQQS---LNHSQQSPLLQNAQGQTPQQPPTPQQF-SN-FNQ---------NGYNG 123
Query: 375 GELGSSALSP-VESQLFSTNRGDE--TSAMLSSGK--VLEHDGSSNTLSDANRAVQVGRQ 429
+ S SP + L ++ G T+A L +GK + + A +Q +Q
Sbjct: 124 QQFSSQVHSPAIGGSLSTSGHGTPLVTNANLMTGKKNTRTPNAQFGNQTAAGTPLQQQQQ 183
Query: 430 NSVP----GTAMLRTMASRDTGKSSVSQT-PVFSGMPFKEQQLKQLRAQCLVFLAF-R-- 481
P ML A + Q P F QQ + L++Q F F R
Sbjct: 184 QPFPHGNNSNPMLNQTAQQPPQSQQRQQNQPPSPQSAFTNQQFQLLKSQLQAFKYFVRAP 243
Query: 482 ---NGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRL 538
G +P+ L ++ + + R + M ++ P S P Y L
Sbjct: 244 GQGQGQIPQNLIAYVSNPSSAMANDMYLPAVNRPQTNGMD-RTMQMPQSIPSQPQQYA-L 301
Query: 539 GNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLE 598
+ P S+GG E K K + P E+R L + E
Sbjct: 302 QQQNDLSNSNP--KSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQRLALEKQRQE 359
Query: 599 AEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINK 658
E +++ QAF A Q ++ P + + + AS + I
Sbjct: 360 LEQNRLKSSAPQAFPPQAGLQGQAPF---------PPQPPQQSQQHVPQPPPASTSSI-- 408
Query: 659 PMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKD-NDPTQFKS 701
P S Q + P RP+ P L D + P KS
Sbjct: 409 PPGGLPQSQPQPQQQQQQPSRPITKPATPQPLFPDPSPPVNIKS 452
Score = 52 (23.4 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 30/131 (22%), Positives = 54/131 (41%)
Query: 672 SQNEVPRRPLPAPTVQHELVKDN--DPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPV 729
+Q + P++P P P Q N + QF S HS A G + S + + + +
Sbjct: 99 AQGQTPQQP-PTPQ-QFSNFNQNGYNGQQFSSQVHSPAIGGSLSTSGHGTPLVTNA-NLM 155
Query: 730 SGTDSDRY--SLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDK 787
+G + R + + A+G Q P F G+ + P+ N T +Q + +
Sbjct: 156 TGKKNTRTPNAQFGNQTAAGTPLQQQQQQP-FPHGNNSNPMLNQ-------TAQQPPQSQ 207
Query: 788 SLHTDSPPAPK 798
+ PP+P+
Sbjct: 208 QRQQNQPPSPQ 218
Score = 39 (18.8 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQN 195
Q Q++Q+ ++ ++++ S++H Q+
Sbjct: 65 QQQQQQQQQQQQQQQQQQQQQSLNHSQQS 93
Score = 39 (18.8 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ S + S + Q + PQQ
Sbjct: 74 QQQQQQQQQQQQSLNHSQ-QSPLLQNAQGQTPQQ 106
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1282 (456.3 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 276/646 (42%), Positives = 396/646 (61%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
+ FH + + ++K++++ ++++ LK ND E YL+++ K R+ LL++T ++L
Sbjct: 658 INNFHNQTAKEEQKKLEKMAKQRLQALKSNDEEAYLKLLDHTKDTRITHLLEQTNQFLDS 717
Query: 1015 LGSKLQEAKSMASHFENEMDETQTVSVVEKYEPA-VENEDESDQAKHYLESNEKYYLMAH 1073
L +Q + A +N + + EPA VE D D+ + ++ YY +AH
Sbjct: 718 LALAVQSQQKEAQ--DNLAYSGRAI------EPASVEPLD--DEKREKID----YYNVAH 763
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
IKE V++QP+ L GG L+EYQ+ GL+W+VSL+NN LNGILADEMGLGKT+Q I+L+ YL
Sbjct: 764 RIKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYL 823
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNV 1193
+E K GPF W E WAP I KI Y G P +R+ + + I F +
Sbjct: 824 VEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK-VMQHDIRTGNFQL 882
Query: 1194 LLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL-KHYQSSHRLLLTGTP 1252
+LTT+EY++ D+ L +I+W ++IIDEGHR+KNA+ KL+ L ++Y S +RL+LTGTP
Sbjct: 883 VLTTFEYVIK--DKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTP 940
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
IFNS + F +WFN PF + G D +I RLH
Sbjct: 941 LQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQ--DKIELTEEETLLVIRRLH 998
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ-KLLMKRVEENLGSIGNSKGRSV-- 1369
+VLRPF+LRRLK VE +LP K+E++V+C++SA Q KL + + N+ G+ SV
Sbjct: 999 KVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPV 1058
Query: 1370 -----HNSVMELRNICNHPYLSQLHAEEVDTLI-PK-HYLPPIVRLCGKLEMLDRLLPKL 1422
+N +M+L+ ICNHP++ EEV+ LI P I R+ GK E+LD++LPK
Sbjct: 1059 TIKNANNQIMQLKKICNHPFVY----EEVENLINPNIETNDQIWRVAGKFELLDKVLPKF 1114
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KAT H+VL F MT+++++MED+L F+ +Y+RLDG T DR L+ FN DS +F F
Sbjct: 1115 KATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCF 1174
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR T +VEE
Sbjct: 1175 LLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEE 1234
Query: 1543 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
+ A KL + + I AG FDN ++AE++ L +L+ K++E
Sbjct: 1235 MILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIE--KEDE 1278
Score = 64 (27.6 bits), Expect = 2.8e-135, Sum P(2) = 2.8e-135
Identities = 93/464 (20%), Positives = 151/464 (32%)
Query: 258 RVKQE-GQNVTEKP--LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLAS 314
++KQ+ G V P + N++ + +F ++ + QQQ
Sbjct: 19 QMKQQYGDQVQLNPEFVKLTKFLNTL-KMQQQRFQQQYQQQQQQQQQQQQQQQQQQQQQQ 77
Query: 315 RGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPT 374
+ Q ++ SQ N +TP Q PT +N F + + Y
Sbjct: 78 QQQQQQQQS---LNHSQQSPLLQNAQGQTPQQPPTPQQF-SN-FNQ---------NGYNG 123
Query: 375 GELGSSALSP-VESQLFSTNRGDE--TSAMLSSGK--VLEHDGSSNTLSDANRAVQVGRQ 429
+ S SP + L ++ G T+A L +GK + + A +Q +Q
Sbjct: 124 QQFSSQVHSPAIGGSLSTSGHGTPLVTNANLMTGKKNTRTPNAQFGNQTAAGTPLQQQQQ 183
Query: 430 NSVP----GTAMLRTMASRDTGKSSVSQT-PVFSGMPFKEQQLKQLRAQCLVFLAF-R-- 481
P ML A + Q P F QQ + L++Q F F R
Sbjct: 184 QPFPHGNNSNPMLNQTAQQPPQSQQRQQNQPPSPQSAFTNQQFQLLKSQLQAFKYFVRAP 243
Query: 482 ---NGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRL 538
G +P+ L ++ + + R + M ++ P S P Y L
Sbjct: 244 GQGQGQIPQNLIAYVSNPSSAMANDMYLPAVNRPQTNGMD-RTMQMPQSIPSQPQQYA-L 301
Query: 539 GNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLE 598
+ P S+GG E K K + P E+R L + E
Sbjct: 302 QQQNDLSNSNP--KSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQRLALEKQRQE 359
Query: 599 AEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINK 658
E +++ QAF A Q ++ P + + + AS + I
Sbjct: 360 LEQNRLKSSAPQAFPPQAGLQGQAPF---------PPQPPQQSQQHVPQPPPASTSSI-- 408
Query: 659 PMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKD-NDPTQFKS 701
P S Q + P RP+ P L D + P KS
Sbjct: 409 PPGGLPQSQPQPQQQQQQPSRPITKPATPQPLFPDPSPPVNIKS 452
Score = 52 (23.4 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 30/131 (22%), Positives = 54/131 (41%)
Query: 672 SQNEVPRRPLPAPTVQHELVKDN--DPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPV 729
+Q + P++P P P Q N + QF S HS A G + S + + + +
Sbjct: 99 AQGQTPQQP-PTPQ-QFSNFNQNGYNGQQFSSQVHSPAIGGSLSTSGHGTPLVTNA-NLM 155
Query: 730 SGTDSDRY--SLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDK 787
+G + R + + A+G Q P F G+ + P+ N T +Q + +
Sbjct: 156 TGKKNTRTPNAQFGNQTAAGTPLQQQQQQP-FPHGNNSNPMLNQ-------TAQQPPQSQ 207
Query: 788 SLHTDSPPAPK 798
+ PP+P+
Sbjct: 208 QRQQNQPPSPQ 218
Score = 39 (18.8 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQN 195
Q Q++Q+ ++ ++++ S++H Q+
Sbjct: 65 QQQQQQQQQQQQQQQQQQQQQSLNHSQQS 93
Score = 39 (18.8 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
Q Q++Q+ ++ S + S + Q + PQQ
Sbjct: 74 QQQQQQQQQQQQSLNHSQ-QSPLLQNAQGQTPQQ 106
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 1314 (467.6 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 283/652 (43%), Positives = 406/652 (62%)
Query: 942 KIKRERWRG--VNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSD 999
K R+ +R + + + FH+ E+ +K++R ++++ L+ ND E YL+++ K
Sbjct: 359 KYVRDHYRSHYLVRQINNFHQTTEKEESKKLERTAKQRLQALRSNDEEAYLKLLDKTKDH 418
Query: 1000 RVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAK 1059
R+ LLK+T ++L L K++ + AS M + S E AVEN+ + D+A+
Sbjct: 419 RITHLLKQTNQFLDSLTEKVRAQQEEASG--GSMGTPRHGSP----EVAVENKSD-DKAE 471
Query: 1060 HYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMG 1119
L YY +AH IKE ++EQPT L GGKL+EYQM GL W+VSLYNN LNGILADEMG
Sbjct: 472 --LREKTDYYEVAHRIKEKITEQPTILVGGKLKEYQMKGLEWMVSLYNNHLNGILADEMG 529
Query: 1120 LGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR 1179
LGKT+Q I+L+ YL+E K++ F W E WAP I IVY G ++RR
Sbjct: 530 LGKTIQSISLVTYLIEKKHEN-KFLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRR 588
Query: 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK- 1238
L + I + F VLLTTYEY++ +RP L+K + ++IIDEGHR+KNA KL+ L+
Sbjct: 589 SL-QPDIRYGNFQVLLTTYEYVIR--ERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRT 645
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+Y++ +RL+LTGTP IFNS + F WFN PF + G + +
Sbjct: 646 YYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTG--AQEKIE 703
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EEN 1357
+I RLH+VLRPF+LRRLK VE +LP+K+E++++C S Q +L +++ + N
Sbjct: 704 LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHN 763
Query: 1358 ---LGS-IGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP--IVRLC 1409
+G+ +G +K + ++N +M+LR ICNHP++ EEV++++ L I R+
Sbjct: 764 ALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVF----EEVESVLNSSRLTNDLIWRVS 819
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK E+LDR+LPK K + HRVL F MT+++D+MED+L +K +YLRLDG T +R ++
Sbjct: 820 GKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDML 879
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
FN DS +F FLLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V
Sbjct: 880 KVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 939
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
+LR T +VEE + A KL + + I AG FDN ++AE++ +L+ LL
Sbjct: 940 RILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEEQEAFLKRLL 991
Score = 43 (20.2 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 18 LIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRL 77
++ +K+E +L +K Y +L KE E V Q LD+E++ + ++
Sbjct: 39 VVPKNKEELNELLSKYYKLLFDSNKLKKEFEKSEDKSEGKFEDVNAQAKLDIESVLA-QV 97
Query: 78 PLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEM 116
I D S S + G +K G +NE+
Sbjct: 98 SKEHEEYIKDESEFMQELFSENLKGTIKSE--GF-DNEL 133
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
Identities = 287/681 (42%), Positives = 405/681 (59%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEF-HKRKERIHREKIDRIQREKINLLKIN 984
F + H E K V K ++++ +RI RE++ ++ +I L
Sbjct: 191 FLQSLTKHAREFKEFHKRNMLNHTKVRKSMQQYITNENKRIAREEMKN-EKNRIQKLIQE 249
Query: 985 DVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQE-----AKSMA--SHFENEMDETQ 1037
D EGY M+ + K R+ LL++T+ Y++ L L++ A S+A S+ E D
Sbjct: 250 DEEGYRAMLDEKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAGSLATKSYIRKEYDGVA 309
Query: 1038 TVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG----KLRE 1093
V+ N+D+ + K + E YY AH ++E + EQ + GG KL+
Sbjct: 310 EEDKVKSILDKARNDDDEYENKTKMNI-EDYYTTAHGVREEIKEQHFMMGGGNPSLKLKP 368
Query: 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX 1153
YQ+ GL W+VSL+NN LNGILADEMGLGKT+Q IA I YLME K GPF
Sbjct: 369 YQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVP 428
Query: 1154 GWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKI 1213
W++E + WA +H I Y GP +E R++F+ I KFNVLLTT+EY++ ++ L K+
Sbjct: 429 NWQNEFDKWAANVHLIAYKGP-KETRKVFEPIIKSGKFNVLLTTFEYVIR--EKALLGKL 485
Query: 1214 QWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIF 1272
+W Y+IIDEGHR+KN CKL L +Q RLL+TGTP IF
Sbjct: 486 RWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIF 545
Query: 1273 NSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELP 1332
+S F QWFN PF + G+ II RLH+VLRPF+LRRLK +VE+ELP
Sbjct: 546 SSCSTFEQWFNAPFATTGEK----VELTQEETMLIIRRLHKVLRPFLLRRLKKEVESELP 601
Query: 1333 EKIERLVRCEASAYQKLLMKRVEENLGSIG--NSKGRSVHNSVMELRNICNHPYLSQLHA 1390
+K+E +VRC+ SA QK+L K +++ L G N+ +S+ N+++ LR +CNHP+L +
Sbjct: 602 DKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFLFENVE 661
Query: 1391 EEVDTLIPKHYLPPI--VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448
E ++ + R+ GKLE+L R+LPKL+AT HRVL F MT ++ ++ED+L
Sbjct: 662 ESCRNFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAG 721
Query: 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 1508
+YLRLDG T +RGAL+DKFN +S +F+F+LS RAGG+G+NLQ ADTVIIFD+DW
Sbjct: 722 GTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDW 781
Query: 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
NP D+QAQ RAHRIGQK +V V R T +VEE++ A+A +KL V + I AG FDN +
Sbjct: 782 NPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNRS 841
Query: 1569 SAEDRREYLESLLR-ECKKEE 1588
+ +RRE LE++++ E + EE
Sbjct: 842 TGAERREILENIIKTENESEE 862
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 286/671 (42%), Positives = 401/671 (59%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
FF+E+ + R + N V+ +H ++ R++ R ++ +I LK +D
Sbjct: 216 FFAEVLNAVREFQLQIQASHRRCKQRNDGVQAWHGKQ----RQRATRAEKLRIMALKSDD 271
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEM------DETQTV 1039
E Y+++ +++K++++ L+ET K LG+ +Q K A EN + V
Sbjct: 272 QEEYMKLAKESKNEKLTLFLEETNKIFVSLGAAVQRQKD-AKLSENTKLLKGSESDLSDV 330
Query: 1040 SVVEKYEPAVENE----DESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQ 1095
E PA + E D +D + LE ++ L HSI+E V++QP+ LQGG+LR YQ
Sbjct: 331 DAPEDVLPAQDIEIIDSDNNDDSNDLLEGERQFNLAIHSIQEKVTKQPSLLQGGELRSYQ 390
Query: 1096 MSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGW 1155
+ GL+W+VSLYNN NGILADEMGLGKT+Q IALI YL+E+K+ GP W
Sbjct: 391 LEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNW 450
Query: 1156 ESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQW 1215
E+E WAP I +Y G E+R + + +I KFNVL+T Y+ +M D+ L KI W
Sbjct: 451 ENEFALWAPSISAFLYDGSKEKRTEI-RARIAGGKFNVLITHYDLIMR--DKAFLKKIDW 507
Query: 1216 HYIIIDEGHRIKNASCKLNADL-KHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNS 1274
+Y+I+DEGHR+KN C L L Y+ RLLLTGTP IFNS
Sbjct: 508 NYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNS 567
Query: 1275 SEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEK 1334
+F +WFN PF G S IINRLH V+RPF+LRR K +VE LP K
Sbjct: 568 IHNFEEWFNTPFAECGSAS-----LTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGK 622
Query: 1335 IERLVRCEASAYQKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQLHA 1390
+ +++C+ SA+QKL K+V + +G +G N K +S+ N M+LR CNHPYL + A
Sbjct: 623 TQVILKCDMSAWQKLYYKQVTD-VGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLF-VGA 680
Query: 1391 EEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ 1450
+ + K P IVR GK E+LDRLLPKLK HR+L FS MTRL+D++E YL+
Sbjct: 681 DY--NMCKK---PEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLND 735
Query: 1451 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNP 1510
Y YLRLDG T RG L+ +FN+ DSP+F+FLLS RAGG+G+NLQ ADT+IIFD+DWNP
Sbjct: 736 YMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNP 795
Query: 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA 1570
Q+D QA+ RAHRIGQK++V V ++ ++EE + A+ K+G+ + I AG F+ ++A
Sbjct: 796 QMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTA 855
Query: 1571 EDRREYLESLL 1581
+DRRE LE ++
Sbjct: 856 QDRREMLEEIM 866
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 1246 (443.7 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 279/678 (41%), Positives = 405/678 (59%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKIN--LLKIN- 984
+E+ ++R D ++K+++ + H R+ + R K + + +K N +L +
Sbjct: 249 TEVLERQQRSDRERRLKQKQCDYLQTVCA--HGREINV-RTKNAQARAQKANRAVLAYHS 305
Query: 985 --DVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK--SMASHFENEMDETQTVS 1040
+ E R ++AK R+ L + E+ KL + ++ + + ++ +D
Sbjct: 306 HIEKEEQRRAERNAKQ-RLQALKENDEEAYLKLIDQAKDTRITHLLRQTDHYLDSLAAAV 364
Query: 1041 VVEKYEPAVENEDESDQAKHYLESNEK--YYLMAHSIKESVSEQPTCLQGGKLREYQMSG 1098
V++ + DE + E + K YY +AH+I+E V+EQP+ L GGKL+EYQ+ G
Sbjct: 365 KVQQSQFGESAYDEDMDRRMNPEDDRKIDYYNVAHNIREVVTEQPSILVGGKLKEYQLRG 424
Query: 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESE 1158
L+W++SLYNN LNGILADEMGLGKT+Q I+LI +L+E K GPF W E
Sbjct: 425 LQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTME 484
Query: 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218
WAP I KIVY GPP+ R+ L + + H F VLLTTYEY++ DRP LS+I+W Y+
Sbjct: 485 FERWAPSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIK--DRPLLSRIKWIYM 541
Query: 1219 IIDEGHRIKNASCKLNADLKHYQSS-HRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 1277
IIDEGHR+KN KL L Y SS +RL+LTGTP IFNS +
Sbjct: 542 IIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKS 601
Query: 1278 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337
F +WFN PF + G D +I RLH+VLRPF+LRRLK VE ELP+K+E+
Sbjct: 602 FDEWFNTPFANTGGQ--DKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEK 659
Query: 1338 LVRCEASAYQ-KLLMKRVEENLGSIGNSK-GRS----VHNSVMELRNICNHPYLSQLHAE 1391
++RC+ S Q KL + + + + ++K G++ + N+VM+L+ ICNHP++ +
Sbjct: 660 VIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVER 719
Query: 1392 EVDTLIPKHYLPPIV-RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ 1450
+D P + ++ R+ GK E+LDR+LPKL + HR+L F MT+++++MEDYL ++Q
Sbjct: 720 SID---PTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQ 776
Query: 1451 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNP 1510
+RYLRLDG T DR L+ FN + +FLLS RAGG+G+NLQ ADTVIIFD+DWNP
Sbjct: 777 WRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNP 836
Query: 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA 1570
DLQAQ RAHRIGQ ++V + R T ++VEE + A A++KL + + I AG FDN ++
Sbjct: 837 HQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTP 896
Query: 1571 EDRREYLESLLRECKKEE 1588
E+R +L SLL EE
Sbjct: 897 EEREAFLRSLLENENGEE 914
Score = 146 (56.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 30/111 (27%), Positives = 61/111 (54%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
+ + AH ++ K + R + N+ V +H E+ + + +R ++++ LK ND
Sbjct: 271 YLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKEND 330
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGS--KLQEAKSMASHFENEMD 1034
E YL+++ AK R+ LL++T+ YL L + K+Q+++ S ++ +MD
Sbjct: 331 EEAYLKLIDQAKDTRITHLLRQTDHYLDSLAAAVKVQQSQFGESAYDEDMD 381
Score = 48 (22.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1505 DTDWNPQVDLQAQARAHRIGQKRDV 1529
D W ++D++++AR R KR++
Sbjct: 1008 DAQWMAEMDMESEARPTRGRPKRNI 1032
Score = 41 (19.5 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 253 MSSILRVKQEGQ---NVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
+S +LR+ ++ Q ++ ++PL ++ V V R S +++ S +QQ
Sbjct: 97 LSVLLRLSKDEQLLQSIVKQPLQNSKVDGKVRRDFGS-----CQITPSAKQQ 143
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 1225 (436.3 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 261/616 (42%), Positives = 378/616 (61%)
Query: 982 KINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSV 1041
K ++E +L + + ++L + E+ ++ + +E K + +ET+ +
Sbjct: 427 KTEEIEFWLETHPEYEIVPRDQLSDDEEEEEEEAPVEPEEEKD--DQYAGMDEETKAKMI 484
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGK----LREYQMS 1097
+EK A EDE DQ + YY AH IKE V +Q T + GG L+ YQ+
Sbjct: 485 LEK---ARNEEDEYDQKTK--KQMADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIK 539
Query: 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWES 1157
GL W+VSLYNN LNGILADEMGLGKT+Q I+L+ YLME K + GP+ W++
Sbjct: 540 GLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLSTLSNWQN 599
Query: 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHY 1217
E WAP + I+Y G + RRR+ + +I FNVL+TTYEY++ ++ L KI+W Y
Sbjct: 600 EFAKWAPSVTTIIYKGTKDARRRV-EGQIRKGAFNVLMTTYEYVIK--EKALLGKIRWKY 656
Query: 1218 IIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
+IIDEGHR+KN +CKL L + + HRLLLTGTP IF+S
Sbjct: 657 MIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIFSSCG 716
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
F QWFN PF + G+ II RLH+VLRPF+LRRLK +VE++LP+K E
Sbjct: 717 TFEQWFNAPFATTGEK----VELNQEETMLIIRRLHKVLRPFLLRRLKKEVESQLPDKTE 772
Query: 1337 RLVRCEASAYQKLLMKRVEENL--GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394
+++C+ SA QK++ + +++ L + +S RS+ N+V+ LR +CNHP+L +
Sbjct: 773 YVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSLMNTVVHLRKLCNHPFLFPNIEDSCR 832
Query: 1395 TLIPKHYL--PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYR 1452
+ + ++R+ GKLE+LDR+LPKLKAT HR+L F MT ++++ ED+L F++Y
Sbjct: 833 AYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYT 892
Query: 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV 1512
YLRLDG T +RG L+ +FN +S F+F+LS RAGG+G+NLQ ADTVIIFD+DWNP
Sbjct: 893 YLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 952
Query: 1513 DLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
D+QAQ RAHRIGQK++V VLR T +VEE++ A+A +KL V + I AG FD ++ +
Sbjct: 953 DMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAE 1012
Query: 1573 RREYLESLLRECKKEE 1588
R++ LE +++ +EE
Sbjct: 1013 RKQMLEQIIQADGEEE 1028
Score = 51 (23.0 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 35/155 (22%), Positives = 58/155 (37%)
Query: 559 EADSSSKEVENLKM-MDKSGPPADHSIHA--EERK-QLATGKLEAEMQSQETAESQAFFT 614
E + E+ N K+ M K + A +E+K Q L+ Q+ E +S
Sbjct: 324 ERERKKDEIRNEKLRMQKLMQEDEEGYRALLDEKKDQRLVYLLQ---QTDEYVDSLCSLV 380
Query: 615 SASQQLESASTRGTLAIT--NPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGS 672
Q E + I N +++ H+ R+ ++TG P EI W
Sbjct: 381 RQHQNTEKKKKKEDKKIEKGNQMDEEARVHVR-ERSTGKALTGDQAPKTEEIEFWLETHP 439
Query: 673 QNE-VPRRPLPAPTVQHELVKDNDPTQFKSFGHSG 706
+ E VPR L + E +P + K ++G
Sbjct: 440 EYEIVPRDQLSDDEEEEEEEAPVEPEEEKDDQYAG 474
Score = 39 (18.8 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 14/69 (20%), Positives = 33/69 (47%)
Query: 780 TEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLK 839
TE+ E+ + + + K+T + I+ K +N +LK K+++ + T +++
Sbjct: 265 TEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKSRKAVMT-YHQNN 323
Query: 840 ESVSSSEDI 848
E ++I
Sbjct: 324 ERERKKDEI 332
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 268/588 (45%), Positives = 365/588 (62%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 17 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 74
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 75 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 134
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 135 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 193
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 194 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 251
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 252 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 307
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 308 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 367
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 368 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 423
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 424 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 483
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 484 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 543
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 544 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 591
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 271/672 (40%), Positives = 393/672 (58%)
Query: 935 ERLDEVFKIKRERWRGVNKY--VKEFHKRKERIHREKIDR-IQREKINLLKINDVEG--Y 989
ER + K K+ER + K + +F K ++ + +R Q ++ N +E
Sbjct: 308 ERQQLLEKRKKERNLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGASLHNQMEKDEQ 367
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLG-SKLQEAKSMASHFENEMDETQTVSVVEKYEPA 1048
R+ + AK + E YL+ L +K + + +D ++ E
Sbjct: 368 KRIERTAKQRLAALKSNDEEAYLKLLDQTKDTRITQLLRQTNSFLDSLSEAVRAQQNEAK 427
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
+ + +E YY +AH IKE + +QP+ L GG L+EYQ+ GL W+VSLYNN
Sbjct: 428 ILHGEEVQPITDEEREKTDYYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNN 487
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
LNGILADEMGLGKT+Q I+LI YL E K D GPF W E WAP ++
Sbjct: 488 HLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNT 547
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I+Y G P +R L + +I F+VLLTTYEY++ D+ LSK W ++IIDEGHR+KN
Sbjct: 548 IIYKGTPNQRHSL-QHQIRVGNFDVLLTTYEYIIK--DKSLLSKHDWAHMIIDEGHRMKN 604
Query: 1229 ASCKLNADLKHY-QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFE 1287
A KL+ + HY ++ +RL+LTGTP IFNS++ F WFN PF
Sbjct: 605 AQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFA 664
Query: 1288 SNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 1347
+ G + + II RLH+VLRPF+LRRLK +VE +LP+K+E++++C+ S Q
Sbjct: 665 NTG--TQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQ 722
Query: 1348 KLLMKRV-EENL-----GSIGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLI-P 1398
+ L +++ + N G+ G +KG + ++N +M+LR ICNHP++ +EV+ ++ P
Sbjct: 723 QQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVF----DEVEGVVNP 778
Query: 1399 KHYLPPIV-RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLD 1457
++ R+ GK E+LDR+LPK KA+ HRVL F MT+++D+MED+L K +Y+RLD
Sbjct: 779 SRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLD 838
Query: 1458 GHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ 1517
G T +R +++ FN DS +F FLLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ
Sbjct: 839 GSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQ 898
Query: 1518 ARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 1577
RAHRIGQK +V +LR T +VEE + A KL + + I AG FDN ++AE++ +L
Sbjct: 899 DRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFL 958
Query: 1578 ESLLR-ECKKEE 1588
L+ E +++
Sbjct: 959 RRLIESETNRDD 970
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 1176 (419.0 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 271/690 (39%), Positives = 389/690 (56%)
Query: 926 FFSEIEAHKERLDEVFKIKRERW--RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKI 983
F I H +VF E++ + V K + +HK KE+ RE I+R+ +E+I LLK
Sbjct: 441 FLEAIAIHARDF-KVFHSNNEKFLRQNVIKAIHRYHKEKEK--RE-IERLSKERIRLLKA 496
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ--EAKSMASHFENEMDE------ 1035
D EGY ++ K++R+ LL ET+ L + ++ + + A E E+ +
Sbjct: 497 RDTEGYRDLLAKTKNERLEMLLGETDSLLSSIHQLMEKEQTEKRARELEEELKQNEEQLN 556
Query: 1036 -------------TQTVSVVEKYEPAVENEDES-DQAKHYLESNEKYYLMAHSIKESVSE 1081
T T + ++ NE + L+S ++A V E
Sbjct: 557 DHNGTNTNNNNTTTTTTTTSTTTSTSLSNEGQPIANITSPLQSTTT--ILAKKSNNLVIE 614
Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
QP + GGKL+EYQ++GL WL+SLY LNGILADEMGLGKTVQ IA I +L E N R
Sbjct: 615 QPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVRE 674
Query: 1142 PFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
PF W SE W+P++H IVY G +ERR + I F V++T++EY+
Sbjct: 675 PFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERRETART-IPRNAFCVVITSFEYI 733
Query: 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXX 1261
+ DR L ++ W YIIIDEGHRIKN + KL+ L+ Y S +RLLLTGTP
Sbjct: 734 IK--DRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGELW 791
Query: 1262 XXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLR 1321
IFNS++ F WFN PF++ G N IINRLHQVLR F+LR
Sbjct: 792 ALLNFLLPTIFNSADTFQNWFNAPFQAKGKN---LINVNEEESLIIINRLHQVLRFFLLR 848
Query: 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEE----------NLGSIGNSKGRSVHN 1371
RLK VE++LP+K E++++C SA Q + + + E G G K + +N
Sbjct: 849 RLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNN 908
Query: 1372 SVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLF 1431
V +L+ ICNHPYL + +E D I + ++R GK + +D++L K+ A+ HRVL
Sbjct: 909 IVKQLQKICNHPYLFK---DEWD--INED----LIRTSGKFDTMDQILTKMHASKHRVLI 959
Query: 1432 FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491
F+ MT ++++ME+Y + K++ +LRLDG T +R L+ ++N+ DSPF+IF+LS AGG+
Sbjct: 960 FTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLSTHAGGL 1019
Query: 1492 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551
G+NLQ ADTVIIFD+DWNPQ+DLQAQ R HRIGQ V V R + ++EE++ A K
Sbjct: 1020 GMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEEKILGRATDK 1079
Query: 1552 LGVANQSITAGFFDNNTSAEDRREYLESLL 1581
L + + I AG F+ +++ ++RR LE L
Sbjct: 1080 LEIDAKIIQAGMFNTHSNDQERRAKLEQFL 1109
Score = 44 (20.5 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 169 QERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKG 228
QE+Q + +++ S+ N N ++ N+ N N A G ++
Sbjct: 192 QEKQLRQTETLNNTNNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNTSANGN-NINN 250
Query: 229 AEQSNFNMVPSGG 241
+N N + G
Sbjct: 251 NNNNNNNTTNTNG 263
Score = 43 (20.2 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 960 KRKERIHREKIDRIQREKINLL 981
++KERI +E+ Q+E+I +L
Sbjct: 169 QQKERIQQEQQQAQQQEQIRIL 190
Score = 38 (18.4 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN 321
N +N+ +N+ SA+G N+ ++ N + G N N
Sbjct: 222 NNNNNNNNNNNNNNNNNNNTSANGNNINNNNNNNNNTTNTNGNNNNN 268
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 253/518 (48%), Positives = 333/518 (64%)
Query: 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXX 1148
G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K GPF
Sbjct: 4 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 63
Query: 1149 XXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP 1208
W E + WAP + K+ Y G P RR F ++ KFNVLLTTYEY++ D+
Sbjct: 64 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTYEYIIK--DKH 120
Query: 1209 KLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXXXXXXXXXX 1267
L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 121 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 180
Query: 1268 XXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKV 1327
IF S F QWFN PF G+ II RLH+VLRPF+LRRLK +V
Sbjct: 181 LPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRPFLLRRLKKEV 236
Query: 1328 ENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVHNSVMELRN 1378
E +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ ++ N++M+LR
Sbjct: 237 EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRK 296
Query: 1379 ICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLPKLKATDHRVL 1430
ICNHPY+ Q H EE +H + IV R GK E+LDR+LPKL+AT+H+VL
Sbjct: 297 ICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVL 352
Query: 1431 FFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490
F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +FIFLLS RAGG
Sbjct: 353 LFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGG 412
Query: 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550
+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++ A+A++
Sbjct: 413 LGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 472
Query: 1551 KLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 473 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 510
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 1084 (386.6 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 254/618 (41%), Positives = 359/618 (58%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDR---VNKLLKETE 1009
K ++EF KRK+ ++++ ++ + + +E M DA ++R ++ L +TE
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDA-AERYAVLSSFLTQTE 886
Query: 1010 KYLQKLGSKL------QE------AKSMASHFEN-EMDETQTVSVVEKYEPAVENEDESD 1056
YL KLG K+ QE A ++A+ + +E + + + E + N
Sbjct: 887 DYLHKLGGKITATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEM 946
Query: 1057 QAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILAD 1116
A S KYY +AH++ E V QP+ LQ G LR+YQ+ GL+W++SLYNN+LNGILAD
Sbjct: 947 NAPKENSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILAD 1006
Query: 1117 EMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPE 1176
EMGLGKTVQV+ALI YLME K + GP W+SE++ W P + I Y G +
Sbjct: 1007 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKD 1066
Query: 1177 ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236
+R +LF +++ KFNVL+TTYE++M +DR KLSK+ W YIIIDE R+K+ L D
Sbjct: 1067 QRSKLFSQEVCAMKFNVLVTTYEFIM--YDRSKLSKVDWKYIIIDEAQRMKDRESVLARD 1124
Query: 1237 LKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGD-NSPD 1295
L Y+ RLLLTGTP +F++ + F WF +PF+ G ++ +
Sbjct: 1125 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIE 1184
Query: 1296 XXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL---MK 1352
+I+RLHQ+L PF+LRR VE LP K+ ++RC SA Q + +K
Sbjct: 1185 DDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIK 1244
Query: 1353 -----RVE---ENLGSIGN----SK-GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399
RV+ E L + N +K R+++N MELR CNHP L+ + + K
Sbjct: 1245 ATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFS----K 1300
Query: 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 1459
+L VR CGKL +LDR+L KL+ T HRVL FSTMT+LLD++E+YL +++ Y R+DG
Sbjct: 1301 DFL---VRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGT 1357
Query: 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 1519
TS DR + I FN D+ FIFLLSIRA G G+NLQ ADTV+I+D D NP+ + QA AR
Sbjct: 1358 TSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVAR 1417
Query: 1520 AHRIGQKRDVLVLRFETV 1537
AHRIGQ R+V V+ E V
Sbjct: 1418 AHRIGQTREVKVIYMEAV 1435
Score = 89 (36.4 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 947 RWRGVNKY----VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDR-- 1000
R RGV KY ++EF KRK+ ++++ ++ + + +E M DA ++R
Sbjct: 818 RNRGVAKYHEKMLREFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDA-AERYA 876
Query: 1001 -VNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVV 1042
++ L +TE YL KLG K+ K+ + E++E + V
Sbjct: 877 VLSSFLTQTEDYLHKLGGKITATKN-----QQEVEEAANAAAV 914
Score = 79 (32.9 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 1537 VQTVEEQVRASAE-HKLGVANQSITAGFFDNNTSAEDRREYLESLLRE 1583
+ ++E +R + + +K+ +A++ I AG FD T+ E+RR LE+LL +
Sbjct: 1467 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1514
Score = 66 (28.3 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 41/184 (22%), Positives = 72/184 (39%)
Query: 132 SGAGHDYYQASG-THRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
SG G A G R++ + SPSS + Q Q++Q+ ++ R++
Sbjct: 6 SGGGPARNPAMGPAGRTASTSSAASPSSSSSSVQQQQQQQQQQQQQQQLASRQQQQQ--- 62
Query: 191 HEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS-NFNMVPSGGQMEHFSSL 249
H + N + V G N +PG S++ +QS NF P Q +
Sbjct: 63 HRNSDTNENMFAYQPGGVQGMMGGGNFASSPG--SMQMPQQSRNFFESP---QQQQQQQQ 117
Query: 250 SGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ-GNSLSSA 308
G+ + QEGQ P+ A + ++ +A + K ++ + G G +
Sbjct: 118 QGSST------QEGQQ-NFNPMQQAYIQFAM-QAQHQKAQQQARMGMVGSSSVGKDQDAR 169
Query: 309 NGVL 312
G+L
Sbjct: 170 MGML 173
Score = 66 (28.3 bits), Expect = 8.1e-113, Sum P(4) = 8.1e-113
Identities = 56/240 (23%), Positives = 87/240 (36%)
Query: 235 NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNV-TEKPLDSA-NVSNSVPRASNSKFPEEV 292
N +PSG ++ S N + +L QN T+K L A ++ PR N+ P V
Sbjct: 386 NGMPSGNPLQ----TSANETPVL-----DQNASTKKSLGPAEHLQMQQPRQLNTPTPNLV 436
Query: 293 EVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFE-----RSQVPRFPGNMMIETPMQQ 347
S +G +SL S G + Q R+GF + ++Q+ F E +
Sbjct: 437 APSDTGPLSNSSLQSGQGTQQA-----QQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPP 491
Query: 348 PTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSS-GK 406
+ ++ ++ I P+ + S E Q S G E+ A SS G
Sbjct: 492 ELLQAISPPPL-ELQTQRQISPAIGKVQDRSSDKTG--EDQARSLECGKESQAAASSNGP 548
Query: 407 VLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQ 466
+ + + + D A+ G T S D QT VF P K Q
Sbjct: 549 IFSKE--EDNVGDTEVALTTGHSQLFQNLGKEAT--STDVATKEEQQTDVF---PVKSDQ 601
Score = 64 (27.6 bits), Expect = 1.3e-112, Sum P(4) = 1.3e-112
Identities = 78/338 (23%), Positives = 125/338 (36%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKA--STKRKRGDSSISHEPQNENPQQLDSRNSVVNPRK 212
+PSS S++ S ++ G++ S+ ++R ++ SH Q QL N ++ P +
Sbjct: 179 NPSSQPQASSSKPSGDQFARGERQTESSSQQRNETK-SHPQQQVGTGQLMPGN-MIRPMQ 236
Query: 213 GKMNK--VDAPGGFSVKGAEQSNFNMVPSGGQMEHFS-SLSGNMSSILRVKQEGQNVTEK 269
+ V+ G + A+Q + + + + + S N S + + Q +K
Sbjct: 237 APQAQQLVNNMGNNQLAFAQQ--WQAMQAWARERNIDLSHPANASQMAHILQARMAAQQK 294
Query: 270 PLDSANVSNSVPRASNSKFPEEVEV-SASGQQQGNSLSSANGVLASRGTWNQNRAGFPFE 328
NV++ P S P V NS S +G S + G F
Sbjct: 295 A-GEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTG-SFA 352
Query: 329 RSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGE-LGSSAL-SPVE 386
+ PR M+ P P N H P + P+G L +SA +PV
Sbjct: 353 STSSPR-----MVN-PAMNPFSGQGRENPMYPRHLVQPT--NGMPSGNPLQTSANETPVL 404
Query: 387 SQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSV-PGTAMLRTMASRD 445
Q ST + S G EH R + N V P + +S
Sbjct: 405 DQNASTKK--------SLGPA-EH-----LQMQQPRQLNTPTPNLVAPSDTGPLSNSSLQ 450
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNG 483
+G+ + Q SG F +QQL L+AQ L F + G
Sbjct: 451 SGQGT-QQAQQRSG--FTKQQLHVLKAQILAFRRLKKG 485
Score = 59 (25.8 bits), Expect = 1.3e-114, Sum P(4) = 1.3e-114
Identities = 56/267 (20%), Positives = 102/267 (38%)
Query: 598 EAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGIN 657
+A+ +Q F Q +++ + + +++P N + H+ R G
Sbjct: 239 QAQQLVNNMGNNQLAFAQQWQAMQAWARERNIDLSHPANASQMAHILQARMAAQQKAG-- 296
Query: 658 KPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVK-DNDPTQFKSFGHSGASGNQHANSH 716
E N + SQ+ P P+ + +V +N P + SG SG+ A
Sbjct: 297 -----EGN----VASQS--PSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHA 345
Query: 717 LS--SFS-------IRDQWKPVSGT--DSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRT 765
LS SF+ + P SG ++ Y V+ +GM +P + + T
Sbjct: 346 LSTGSFASTSSPRMVNPAMNPFSGQGRENPMYPRHLVQPTNGM----PSGNPLQTSANET 401
Query: 766 IPVDNSVRNGISL-TTE--QDEEDKSLHTDSPP--APKYT--MSEKWIMDMQKRKLLVEQ 818
+D + SL E Q ++ + L+T +P AP T +S + Q + ++
Sbjct: 402 PVLDQNASTKKSLGPAEHLQMQQPRQLNTPTPNLVAPSDTGPLSNSSLQSGQGTQQAQQR 461
Query: 819 NWILKQQ-KTKQRMSTCFNKLKESVSS 844
+ KQQ + F +LK+ S
Sbjct: 462 SGFTKQQLHVLKAQILAFRRLKKGEGS 488
Score = 53 (23.7 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 26/113 (23%), Positives = 48/113 (42%)
Query: 582 HSIHAEERKQLATGKLEAEMQSQE--TAESQAFFTSASQQLESASTRGTLAI-TNPVNDV 638
H +A + + ++ A+ ++ E A +SQ S+ G + N +D+
Sbjct: 274 HPANASQMAHILQARMAAQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDI 333
Query: 639 ENGHLFIGRANVASVTG----INKP--MNSEINSWTGIGSQNEVPRRPLPAPT 685
+G +A A TG + P +N +N ++G G +N + R L PT
Sbjct: 334 -SGQSGSAKARHALSTGSFASTSSPRMVNPAMNPFSGQGRENPMYPRHLVQPT 385
Score = 51 (23.0 bits), Expect = 3.0e-111, Sum P(4) = 3.0e-111
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 70 EALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPV 129
E ++ P+ S Q DSST + S S KA ++ SK+ P +S P
Sbjct: 588 EEQQTDVFPVKS-DQGADSSTQKNPRSDS----TADKGKAVASDGSQSKVPPQANSPQPP 642
Query: 130 APSGAGHDYY 139
+ + YY
Sbjct: 643 KDTASARKYY 652
Score = 45 (20.9 bits), Expect = 9.6e-113, Sum P(5) = 9.6e-113
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
A++ R+ GSSS G + + + N++ ++ S P S Q A G+ + E
Sbjct: 148 AQQQARMGMVGSSSVG--KDQDARMGMLNMQDLNPSSQPQASS-SKPSGDQFARGERQTE 204
Query: 601 MQSQETAESQA 611
SQ+ E+++
Sbjct: 205 SSSQQRNETKS 215
Score = 42 (19.8 bits), Expect = 1.3e-114, Sum P(5) = 1.3e-114
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 796 APKYTMSEKWIMDM-QKRKLLVEQNWILKQQKTKQRMSTC--FNKLKESVSSSED 847
A + + EK + + Q RK L+E +W ++ +T + K+ S +D
Sbjct: 784 ANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKD 838
Score = 39 (18.8 bits), Expect = 9.6e-113, Sum P(5) = 9.6e-113
Identities = 22/86 (25%), Positives = 34/86 (39%)
Query: 424 VQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNG 483
+Q G P A R T +S + +P S ++QQ +Q + Q LA R
Sbjct: 1 MQSGGSGGGPARNPAMGPAGR-TASTSSAASPSSSSSSVQQQQQQQQQQQQQQQLASRQ- 58
Query: 484 LVPKKLHLEIALG-NIFPREGGNVDG 508
++ H N+F + G V G
Sbjct: 59 --QQQQHRNSDTNENMFAYQPGGVQG 82
Score = 37 (18.1 bits), Expect = 5.9e-113, Sum P(5) = 5.9e-113
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 391 STNRGDETSAMLSSGKVLEHDGSSN 415
ST + + + GK + DGS +
Sbjct: 606 STQKNPRSDSTADKGKAVASDGSQS 630
Score = 37 (18.1 bits), Expect = 1.6e-112, Sum P(5) = 1.6e-112
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 284 SNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNR 322
S++ P S QQQ LASR Q+R
Sbjct: 26 SSAASPSSSSSSVQQQQQQQQQQQQQQQLASRQQQQQHR 64
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 921 (329.3 bits), Expect = 8.1e-97, Sum P(3) = 8.1e-97
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 288
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 289 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 346
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 347 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 392
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 393 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 451
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 452 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 507
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 508 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL 567
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 568 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 627
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 628 SIVIQQGRLVDQNLNKIGKDEMLQMI 653
Score = 478 (173.3 bits), Expect = 5.0e-41, Sum P(2) = 5.0e-41
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 79 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVG 138
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 139 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 191
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 192 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWV 251
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 252 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 309
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 310 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 369
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 370 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 420
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 421 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 461
Score = 50 (22.7 bits), Expect = 8.1e-97, Sum P(3) = 8.1e-97
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 72 IQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 114
Score = 50 (22.7 bits), Expect = 8.1e-97, Sum P(3) = 8.1e-97
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 525 PSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGP 578
P SAP + G G++ P GG++ A S + E ++ D P
Sbjct: 13 PESAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPCAAGSGPADTEMEEVFDHGSP 66
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 783 (280.7 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 190/545 (34%), Positives = 287/545 (52%)
Query: 942 KIKRERWR-----GVNKYVKEFHKRKERIHREKIDRIQREKINLLKI---NDVEGYLRMV 993
K +RER + + Y+K K + +E +D ++ N+ K E Y
Sbjct: 728 KEERERMKLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESS 787
Query: 994 QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
+ +N ++ EK + SK + H + + + Y+ E+ +
Sbjct: 788 EQNFHGLINHKNEDNEKCHKNYNSKDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNE 847
Query: 1054 ESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGI 1113
+ + +Y + E YY ++H +KE V +QP+ L GG+L +YQ+ GL WLVSLYNN L+GI
Sbjct: 848 NNTKICNYKNARENYYNISHVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGI 906
Query: 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX-GWESEINFWAPRIHKIVYC 1172
LADEMGLGKT+Q I+L YL E KN+ W SE N W P ++ I Y
Sbjct: 907 LADEMGLGKTIQTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYR 966
Query: 1173 GPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232
G ER+ + K K++ Q F++ +TT++ ++ ++ L KI W+YI++DEGHR+KN +
Sbjct: 967 GNKLERKHIAK-KLLEQTFDICITTFDLVIK--EKSFLMKISWNYIVVDEGHRMKNNKSR 1023
Query: 1233 LNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDN 1292
+ L ++S +R+LLTGTP IF+S DF +WF K + D
Sbjct: 1024 FHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDV 1083
Query: 1293 SPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK 1352
IINRLH VL PF+LRR+K V LP+K E + E S YQK+L K
Sbjct: 1084 ---YEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYK 1140
Query: 1353 RVE----ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL 1408
+++ + + G+ + N VM+LR I NHPYL L+ +D I++
Sbjct: 1141 QIQTKGFKQVNHNGSITTKIFQNIVMQLRKIVNHPYLF-LYDYNIDE--------NIIKC 1191
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
GK E+LDR+LPKL H+VL FS MT+L++++ DYL F+ Y+Y RLDG+ +R +
Sbjct: 1192 SGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKI 1251
Query: 1469 IDKFN 1473
ID+FN
Sbjct: 1252 IDQFN 1256
Score = 263 (97.6 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 55/114 (48%), Positives = 77/114 (67%)
Query: 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 1534
QD+ IF+LS R+G +G+NLQ ADTVIIFD+D+NP D+QA R HRIGQK V V RF
Sbjct: 1401 QDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRF 1458
Query: 1535 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
T+ VEE V A+HKL + ++ I AG F+ + EDR+ L+ +++ +K +
Sbjct: 1459 ITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKND 1512
Score = 107 (42.7 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 970 IDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHF 1029
+++ +RE++ LLK ND+E Y+++++ AK+ R+ +LL TE++L + + K A
Sbjct: 726 LEKEERERMKLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQE 785
Query: 1030 ENEMD 1034
+E +
Sbjct: 786 SSEQN 790
Score = 69 (29.3 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 953 KYVK--EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEK 1010
KY++ E+ KRK++ +E + ++EK N + +D E + ++ K+++ +++ + EK
Sbjct: 108 KYLRHLEYLKRKKKKDKENKSKSKKEKNNKNEKDD-EMENKKEKNNKNEKDDEMENKKEK 166
Query: 1011 YLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+ E K ++ +NE D+ + + EK E +DE + K NEK
Sbjct: 167 NNKNEKDDEMENKKEKNN-KNEKDD-EMENKKEKNNKN-EKDDEMENKKEKNNKNEK 220
Score = 68 (29.0 bits), Expect = 5.4e-17, Sum P(4) = 5.4e-17
Identities = 31/139 (22%), Positives = 68/139 (48%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQREKI-NLLKINDVEGYL 990
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +K N D E
Sbjct: 152 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMEN 210
Query: 991 RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK-SMASHFENEMDETQTVSVVEKYEPAV 1049
+ ++ K+++ +++ + EK K E K +M EN+++++ + ++
Sbjct: 211 KKEKNNKNEKDDEMENKKEK--NNKNEKDDEIKENMDKVMENQLNQSNILYNKDRIRKNR 268
Query: 1050 EN-EDESDQA-KHYLESNE 1066
N +DE D + K+ L+ N+
Sbjct: 269 NNLKDEKDVSNKNILDDNK 287
Score = 66 (28.3 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 25/133 (18%), Positives = 53/133 (39%)
Query: 165 NSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF 224
N ++ + + KK + D + ++ + N + D + +K K NK +
Sbjct: 152 NKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE---MENKKEKNNKNEKDDEM 208
Query: 225 SVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANV--SNSVPR 282
K E++N N +ME+ + +K+ V E L+ +N+ + R
Sbjct: 209 ENK-KEKNNKN--EKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQSNILYNKDRIR 265
Query: 283 ASNSKFPEEVEVS 295
+ + +E +VS
Sbjct: 266 KNRNNLKDEKDVS 278
Score = 63 (27.2 bits), Expect = 5.7e-96, Sum P(4) = 5.7e-96
Identities = 31/165 (18%), Positives = 68/165 (41%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ-LDSRNSVVNPRKGKMNKVDAPGGFS 225
+ +++ K+ K S K K + E +N+ + + ++ + +K K NK +
Sbjct: 118 RKKKKDKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEME 177
Query: 226 VKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASN 285
K E++N N + + + + K+E N EK + N + N
Sbjct: 178 NK-KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMEN-----KKEKN 231
Query: 286 SKFPEEVEVSASGQQ-QGNSLSSANGVLASRGTWNQNRAGFPFER 329
+K ++ E+ + + N L+ +N +L ++ +NR E+
Sbjct: 232 NKNEKDDEIKENMDKVMENQLNQSN-ILYNKDRIRKNRNNLKDEK 275
Score = 60 (26.2 bits), Expect = 8.2e-19, Sum P(4) = 8.2e-19
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKI--NLLKIND 985
+E+ H D++ KI+ + + +Y+K+ H K +IH I +++ + N ++
Sbjct: 633 NEVSIHFN--DDIKKIEHVAKKELQEYIKQIHN-KSKIHNN-ISSLKQYMLISNWKELTK 688
Query: 986 VEGYLRMVQDAKSDRVNKLL 1005
Y+ ++ + K R +K+L
Sbjct: 689 HNNYMTLLSEEKK-RNSKIL 707
Score = 58 (25.5 bits), Expect = 1.9e-95, Sum P(4) = 1.9e-95
Identities = 22/118 (18%), Positives = 43/118 (36%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
D E+ S N ++ + + KK + D + ++ + N + D + +
Sbjct: 123 DKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE---MENK 179
Query: 212 KGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEK 269
K K NK + K E++N N + + + + K+E N EK
Sbjct: 180 KEKNNKNEKDDEMENK-KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEK 236
Score = 56 (24.8 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 29/126 (23%), Positives = 59/126 (46%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKI-NLLKINDVEGYLRMVQDAKSDRV 1001
+KR++ + +K K K+++ EK D ++ +K N D E + ++ K+++
Sbjct: 116 LKRKKKK--DKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKD 173
Query: 1002 NKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHY 1061
+++ + EK + E K ++ +NE D+ + + EK E +DE + K
Sbjct: 174 DEMENKKEKNNKNEKDDEMENKKEKNN-KNEKDD-EMENKKEKNNKN-EKDDEMENKKEK 230
Query: 1062 LESNEK 1067
NEK
Sbjct: 231 NNKNEK 236
Score = 56 (24.8 bits), Expect = 8.6e-16, Sum P(4) = 8.6e-16
Identities = 26/122 (21%), Positives = 56/122 (45%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQREKINLLKINDVEGYLR 991
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +K K N+ + +
Sbjct: 136 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNK-NEKDDEM- 192
Query: 992 MVQDAKSDRVNKLLKETEKYLQK-LGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050
+ K ++ NK K+ E +K +K ++ M + E + + E + +E
Sbjct: 193 ---ENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVME 249
Query: 1051 NE 1052
N+
Sbjct: 250 NQ 251
Score = 54 (24.1 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 23/111 (20%), Positives = 59/111 (53%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQ--REKINLLKIND-VEG 988
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +EK N + +D ++
Sbjct: 184 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKE 242
Query: 989 YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTV 1039
+ V + + ++ N L + ++K + L++ K +++ +N +D+ + +
Sbjct: 243 NMDKVMENQLNQSNILYNKDR--IRKNRNNLKDEKDVSN--KNILDDNKDI 289
Score = 52 (23.4 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 28/121 (23%), Positives = 49/121 (40%)
Query: 196 ENPQQLDSRNSVVNPRK--GKMNKVDAPGGFSVKGAEQSNFNM-VPSGGQME--HFSSLS 250
E + +D N+ V +K GK + PG ++ + N NM V M ++S
Sbjct: 1247 ERKKIIDQFNNNVEYKKDEGKQPNCEMPGNENMNMSGNENMNMSVNENMNMSVNENMNMS 1306
Query: 251 GNMSSILRVKQEGQNVT--EKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
GN + + E N++ E S N + ++ N ++ SG + +SS
Sbjct: 1307 GNENMNMS-GNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMISSQ 1365
Query: 309 N 309
N
Sbjct: 1366 N 1366
Score = 46 (21.3 bits), Expect = 1.3e-73, Sum P(4) = 1.3e-73
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 1557 QSITAGFFD--NNTSAEDRREYLESLLRECKKEE 1588
+++ +G F + E+ YL S++++ KKEE
Sbjct: 1559 ENVDSGQFTYMSEDEKEENETYLSSIIKKEKKEE 1592
Score = 45 (20.9 bits), Expect = 4.3e-94, Sum P(4) = 4.3e-94
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKV 218
+ + ++ + +KD + + K K + + + EN ++ +++N + K M+KV
Sbjct: 191 EMENKKEKNNKNEKDDEMENKKEKNNKNE--KDDEMENKKEKNNKNEKDDEIKENMDKV 247
Score = 44 (20.5 bits), Expect = 1.5e-94, Sum P(3) = 1.5e-94
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 139 YQASGTHRSSQSFDHESPSSLDTR-SANSQSQERQKDG---KKASTKRK-RGDSSISHEP 193
Y S + ++ + +E + +D + S S E+ K G KK +TK+ D+ ++
Sbjct: 516 YMNSENNINNMNILNEWTNFMDQNINIESISPEQHKKGNRKKKINTKKLYHHDNYNNNNN 575
Query: 194 QNENPQQLDSRNSVVNPRKGKMN 216
N N D+ N N N
Sbjct: 576 NNNNDNNNDNNNDNNNDNNNDNN 598
Score = 43 (20.2 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 770 NSVRNGISLTTEQDEEDKS-LHTDSPPAPKYTMSEK 804
NS+ NG S +T ++D S L + S + T E+
Sbjct: 310 NSIENGNSSSTSSCDDDSSFLFSCSSDCDEETSDEE 345
Score = 43 (20.2 bits), Expect = 7.0e-94, Sum P(4) = 7.0e-94
Identities = 10/66 (15%), Positives = 28/66 (42%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
D E + + + N + E + +K + K + E N+N + + + ++
Sbjct: 189 DDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVM 248
Query: 212 KGKMNK 217
+ ++N+
Sbjct: 249 ENQLNQ 254
Score = 43 (20.2 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1329 NELPEKIERLVRCEASAYQKLL--MKRVEENLGS------IGNSKGRSVHNSVMEL 1376
N+ +KIE + + E Y K + ++ N+ S I N K + HN+ M L
Sbjct: 640 NDDIKKIEHVAKKELQEYIKQIHNKSKIHNNISSLKQYMLISNWKELTKHNNYMTL 695
Score = 42 (19.8 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 16/92 (17%), Positives = 39/92 (42%)
Query: 689 ELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGM 748
+L+KDND + + + ++ + + K V + Y ++ G+
Sbjct: 735 KLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGL 794
Query: 749 LRHTSQDDPKFSDGSRTIPVDNSVRNGISLTT 780
+ H ++D+ K + +N +++ +LTT
Sbjct: 795 INHKNEDNEKCHKNYNSKDNNNILQSVHNLTT 826
Score = 40 (19.1 bits), Expect = 4.0e-94, Sum P(3) = 4.0e-94
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 789 LHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDI 848
LH + PK M + +I K K L + LK++K K + + +K +++ + +D
Sbjct: 84 LHFKNFKRPKTHMKKVFIDLTLKLKYLRHLEY-LKRKKKKDKENKSKSKKEKNNKNEKDD 142
Query: 849 SAKTK 853
+ K
Sbjct: 143 EMENK 147
Score = 39 (18.8 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSK--LQEAKSMASHFENEMDETQTVS 1040
M++ K +R NK++KE Y++ + + L ++ + +NE+ +Q ++
Sbjct: 25 MIEGEK-ERKNKIIKE---YIKNMNEEDFLYLSEHLKIRIDNEIFMSQELN 71
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 783 (280.7 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 190/545 (34%), Positives = 287/545 (52%)
Query: 942 KIKRERWR-----GVNKYVKEFHKRKERIHREKIDRIQREKINLLKI---NDVEGYLRMV 993
K +RER + + Y+K K + +E +D ++ N+ K E Y
Sbjct: 728 KEERERMKLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESS 787
Query: 994 QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
+ +N ++ EK + SK + H + + + Y+ E+ +
Sbjct: 788 EQNFHGLINHKNEDNEKCHKNYNSKDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNE 847
Query: 1054 ESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGI 1113
+ + +Y + E YY ++H +KE V +QP+ L GG+L +YQ+ GL WLVSLYNN L+GI
Sbjct: 848 NNTKICNYKNARENYYNISHVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGI 906
Query: 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX-GWESEINFWAPRIHKIVYC 1172
LADEMGLGKT+Q I+L YL E KN+ W SE N W P ++ I Y
Sbjct: 907 LADEMGLGKTIQTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYR 966
Query: 1173 GPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232
G ER+ + K K++ Q F++ +TT++ ++ ++ L KI W+YI++DEGHR+KN +
Sbjct: 967 GNKLERKHIAK-KLLEQTFDICITTFDLVIK--EKSFLMKISWNYIVVDEGHRMKNNKSR 1023
Query: 1233 LNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDN 1292
+ L ++S +R+LLTGTP IF+S DF +WF K + D
Sbjct: 1024 FHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDV 1083
Query: 1293 SPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK 1352
IINRLH VL PF+LRR+K V LP+K E + E S YQK+L K
Sbjct: 1084 ---YEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYK 1140
Query: 1353 RVE----ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL 1408
+++ + + G+ + N VM+LR I NHPYL L+ +D I++
Sbjct: 1141 QIQTKGFKQVNHNGSITTKIFQNIVMQLRKIVNHPYLF-LYDYNIDE--------NIIKC 1191
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
GK E+LDR+LPKL H+VL FS MT+L++++ DYL F+ Y+Y RLDG+ +R +
Sbjct: 1192 SGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKI 1251
Query: 1469 IDKFN 1473
ID+FN
Sbjct: 1252 IDQFN 1256
Score = 263 (97.6 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 55/114 (48%), Positives = 77/114 (67%)
Query: 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 1534
QD+ IF+LS R+G +G+NLQ ADTVIIFD+D+NP D+QA R HRIGQK V V RF
Sbjct: 1401 QDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRF 1458
Query: 1535 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
T+ VEE V A+HKL + ++ I AG F+ + EDR+ L+ +++ +K +
Sbjct: 1459 ITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKND 1512
Score = 107 (42.7 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 970 IDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHF 1029
+++ +RE++ LLK ND+E Y+++++ AK+ R+ +LL TE++L + + K A
Sbjct: 726 LEKEERERMKLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQE 785
Query: 1030 ENEMD 1034
+E +
Sbjct: 786 SSEQN 790
Score = 69 (29.3 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 953 KYVK--EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEK 1010
KY++ E+ KRK++ +E + ++EK N + +D E + ++ K+++ +++ + EK
Sbjct: 108 KYLRHLEYLKRKKKKDKENKSKSKKEKNNKNEKDD-EMENKKEKNNKNEKDDEMENKKEK 166
Query: 1011 YLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+ E K ++ +NE D+ + + EK E +DE + K NEK
Sbjct: 167 NNKNEKDDEMENKKEKNN-KNEKDD-EMENKKEKNNKN-EKDDEMENKKEKNNKNEK 220
Score = 68 (29.0 bits), Expect = 5.4e-17, Sum P(4) = 5.4e-17
Identities = 31/139 (22%), Positives = 68/139 (48%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQREKI-NLLKINDVEGYL 990
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +K N D E
Sbjct: 152 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMEN 210
Query: 991 RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK-SMASHFENEMDETQTVSVVEKYEPAV 1049
+ ++ K+++ +++ + EK K E K +M EN+++++ + ++
Sbjct: 211 KKEKNNKNEKDDEMENKKEK--NNKNEKDDEIKENMDKVMENQLNQSNILYNKDRIRKNR 268
Query: 1050 EN-EDESDQA-KHYLESNE 1066
N +DE D + K+ L+ N+
Sbjct: 269 NNLKDEKDVSNKNILDDNK 287
Score = 66 (28.3 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 25/133 (18%), Positives = 53/133 (39%)
Query: 165 NSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF 224
N ++ + + KK + D + ++ + N + D + +K K NK +
Sbjct: 152 NKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE---MENKKEKNNKNEKDDEM 208
Query: 225 SVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANV--SNSVPR 282
K E++N N +ME+ + +K+ V E L+ +N+ + R
Sbjct: 209 ENK-KEKNNKN--EKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQSNILYNKDRIR 265
Query: 283 ASNSKFPEEVEVS 295
+ + +E +VS
Sbjct: 266 KNRNNLKDEKDVS 278
Score = 63 (27.2 bits), Expect = 5.7e-96, Sum P(4) = 5.7e-96
Identities = 31/165 (18%), Positives = 68/165 (41%)
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ-LDSRNSVVNPRKGKMNKVDAPGGFS 225
+ +++ K+ K S K K + E +N+ + + ++ + +K K NK +
Sbjct: 118 RKKKKDKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEME 177
Query: 226 VKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASN 285
K E++N N + + + + K+E N EK + N + N
Sbjct: 178 NK-KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMEN-----KKEKN 231
Query: 286 SKFPEEVEVSASGQQ-QGNSLSSANGVLASRGTWNQNRAGFPFER 329
+K ++ E+ + + N L+ +N +L ++ +NR E+
Sbjct: 232 NKNEKDDEIKENMDKVMENQLNQSN-ILYNKDRIRKNRNNLKDEK 275
Score = 60 (26.2 bits), Expect = 8.2e-19, Sum P(4) = 8.2e-19
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKI--NLLKIND 985
+E+ H D++ KI+ + + +Y+K+ H K +IH I +++ + N ++
Sbjct: 633 NEVSIHFN--DDIKKIEHVAKKELQEYIKQIHN-KSKIHNN-ISSLKQYMLISNWKELTK 688
Query: 986 VEGYLRMVQDAKSDRVNKLL 1005
Y+ ++ + K R +K+L
Sbjct: 689 HNNYMTLLSEEKK-RNSKIL 707
Score = 58 (25.5 bits), Expect = 1.9e-95, Sum P(4) = 1.9e-95
Identities = 22/118 (18%), Positives = 43/118 (36%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
D E+ S N ++ + + KK + D + ++ + N + D + +
Sbjct: 123 DKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE---MENK 179
Query: 212 KGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEK 269
K K NK + K E++N N + + + + K+E N EK
Sbjct: 180 KEKNNKNEKDDEMENK-KEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEK 236
Score = 56 (24.8 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 29/126 (23%), Positives = 59/126 (46%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKI-NLLKINDVEGYLRMVQDAKSDRV 1001
+KR++ + +K K K+++ EK D ++ +K N D E + ++ K+++
Sbjct: 116 LKRKKKK--DKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKD 173
Query: 1002 NKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHY 1061
+++ + EK + E K ++ +NE D+ + + EK E +DE + K
Sbjct: 174 DEMENKKEKNNKNEKDDEMENKKEKNN-KNEKDD-EMENKKEKNNKN-EKDDEMENKKEK 230
Query: 1062 LESNEK 1067
NEK
Sbjct: 231 NNKNEK 236
Score = 56 (24.8 bits), Expect = 8.6e-16, Sum P(4) = 8.6e-16
Identities = 26/122 (21%), Positives = 56/122 (45%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQREKINLLKINDVEGYLR 991
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +K K N+ + +
Sbjct: 136 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNK-NEKDDEM- 192
Query: 992 MVQDAKSDRVNKLLKETEKYLQK-LGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050
+ K ++ NK K+ E +K +K ++ M + E + + E + +E
Sbjct: 193 ---ENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVME 249
Query: 1051 NE 1052
N+
Sbjct: 250 NQ 251
Score = 54 (24.1 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 23/111 (20%), Positives = 59/111 (53%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR-EKIDRIQ--REKINLLKIND-VEG 988
+K D+ + K+E+ N+ E +KE+ ++ EK D ++ +EK N + +D ++
Sbjct: 184 NKNEKDDEMENKKEK-NNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKE 242
Query: 989 YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTV 1039
+ V + + ++ N L + ++K + L++ K +++ +N +D+ + +
Sbjct: 243 NMDKVMENQLNQSNILYNKDR--IRKNRNNLKDEKDVSN--KNILDDNKDI 289
Score = 52 (23.4 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 28/121 (23%), Positives = 49/121 (40%)
Query: 196 ENPQQLDSRNSVVNPRK--GKMNKVDAPGGFSVKGAEQSNFNM-VPSGGQME--HFSSLS 250
E + +D N+ V +K GK + PG ++ + N NM V M ++S
Sbjct: 1247 ERKKIIDQFNNNVEYKKDEGKQPNCEMPGNENMNMSGNENMNMSVNENMNMSVNENMNMS 1306
Query: 251 GNMSSILRVKQEGQNVT--EKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
GN + + E N++ E S N + ++ N ++ SG + +SS
Sbjct: 1307 GNENMNMS-GNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMISSQ 1365
Query: 309 N 309
N
Sbjct: 1366 N 1366
Score = 46 (21.3 bits), Expect = 1.3e-73, Sum P(4) = 1.3e-73
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 1557 QSITAGFFD--NNTSAEDRREYLESLLRECKKEE 1588
+++ +G F + E+ YL S++++ KKEE
Sbjct: 1559 ENVDSGQFTYMSEDEKEENETYLSSIIKKEKKEE 1592
Score = 45 (20.9 bits), Expect = 4.3e-94, Sum P(4) = 4.3e-94
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKV 218
+ + ++ + +KD + + K K + + + EN ++ +++N + K M+KV
Sbjct: 191 EMENKKEKNNKNEKDDEMENKKEKNNKNE--KDDEMENKKEKNNKNEKDDEIKENMDKV 247
Score = 44 (20.5 bits), Expect = 1.5e-94, Sum P(3) = 1.5e-94
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 139 YQASGTHRSSQSFDHESPSSLDTR-SANSQSQERQKDG---KKASTKRK-RGDSSISHEP 193
Y S + ++ + +E + +D + S S E+ K G KK +TK+ D+ ++
Sbjct: 516 YMNSENNINNMNILNEWTNFMDQNINIESISPEQHKKGNRKKKINTKKLYHHDNYNNNNN 575
Query: 194 QNENPQQLDSRNSVVNPRKGKMN 216
N N D+ N N N
Sbjct: 576 NNNNDNNNDNNNDNNNDNNNDNN 598
Score = 43 (20.2 bits), Expect = 2.7e-96, Sum P(4) = 2.7e-96
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 770 NSVRNGISLTTEQDEEDKS-LHTDSPPAPKYTMSEK 804
NS+ NG S +T ++D S L + S + T E+
Sbjct: 310 NSIENGNSSSTSSCDDDSSFLFSCSSDCDEETSDEE 345
Score = 43 (20.2 bits), Expect = 7.0e-94, Sum P(4) = 7.0e-94
Identities = 10/66 (15%), Positives = 28/66 (42%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
D E + + + N + E + +K + K + E N+N + + + ++
Sbjct: 189 DDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVM 248
Query: 212 KGKMNK 217
+ ++N+
Sbjct: 249 ENQLNQ 254
Score = 43 (20.2 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1329 NELPEKIERLVRCEASAYQKLL--MKRVEENLGS------IGNSKGRSVHNSVMEL 1376
N+ +KIE + + E Y K + ++ N+ S I N K + HN+ M L
Sbjct: 640 NDDIKKIEHVAKKELQEYIKQIHNKSKIHNNISSLKQYMLISNWKELTKHNNYMTL 695
Score = 42 (19.8 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 16/92 (17%), Positives = 39/92 (42%)
Query: 689 ELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGM 748
+L+KDND + + + ++ + + K V + Y ++ G+
Sbjct: 735 KLLKDNDIEAYMKLIKTAKNKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGL 794
Query: 749 LRHTSQDDPKFSDGSRTIPVDNSVRNGISLTT 780
+ H ++D+ K + +N +++ +LTT
Sbjct: 795 INHKNEDNEKCHKNYNSKDNNNILQSVHNLTT 826
Score = 40 (19.1 bits), Expect = 4.0e-94, Sum P(3) = 4.0e-94
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 789 LHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDI 848
LH + PK M + +I K K L + LK++K K + + +K +++ + +D
Sbjct: 84 LHFKNFKRPKTHMKKVFIDLTLKLKYLRHLEY-LKRKKKKDKENKSKSKKEKNNKNEKDD 142
Query: 849 SAKTK 853
+ K
Sbjct: 143 EMENK 147
Score = 39 (18.8 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSK--LQEAKSMASHFENEMDETQTVS 1040
M++ K +R NK++KE Y++ + + L ++ + +NE+ +Q ++
Sbjct: 25 MIEGEK-ERKNKIIKE---YIKNMNEEDFLYLSEHLKIRIDNEIFMSQELN 71
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 937 (334.9 bits), Expect = 3.6e-96, Sum P(2) = 3.6e-96
Identities = 234/666 (35%), Positives = 357/666 (53%)
Query: 950 GVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETE 1009
G+N+ + R ER+ E I R+++E++ ++ E + +Q+ + ++ +L ++ E
Sbjct: 116 GINRKDETEEARNERL--ESI-RLEKERLKQIR----EQQRKQLQELEKNQRQQLQEDKE 168
Query: 1010 KYLQKLGSKLQEAKSMASHF------ENEMDETQTVS-VVEKYEPAVENEDESDQAK--- 1059
K L E + +HF N +T+T S V+ + N + ++
Sbjct: 169 KSANARLKYLLERTEIFTHFVSNSNNNNNTKKTKTKSPVLSSSSASSSNNNNNNNNNGSI 228
Query: 1060 ---------HYLESNEKYYLMAHSIKES-------VSEQPTCLQGGKLREYQMSGLRWLV 1103
H E E +M +++E + P ++ G +R+YQ+ GL WL+
Sbjct: 229 VSSTPTKRGHITEEAEDEAIMNETMEEEEPHSFNFFTSSPPYIKSGTMRDYQVYGLNWLI 288
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
LY +NGILADEMGLGKT+Q I+L+ YL E K RGP GW E W
Sbjct: 289 QLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAPKSTLSGWAKEFTRWC 348
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + + G EER + K +++ +KF+V +TTYE + ++ K W YIIIDE
Sbjct: 349 PFLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIR--EKSTFKKFSWRYIIIDEA 406
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN + L+ ++ + S RLL+TGTP +F+SS+DF +WF+
Sbjct: 407 HRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFD 466
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RL 1338
+N +N + +I++LH+VLRPF+LRR+K +VE LP K E L
Sbjct: 467 --LANNTENQQE-----------VIDKLHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGL 513
Query: 1339 VRCEASAYQKLLMKRVEENL-GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397
+ Y++LL K ++ + G+ GN+ + N M+LR CNHPYL AEE
Sbjct: 514 STMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICMQLRKACNHPYLFD-GAEEEPYTT 572
Query: 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLD 1457
+H ++ GK+ +LD+LL KLK RVL FS M+R+LD++EDY+ ++ Y+Y R+D
Sbjct: 573 GEH----LIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARID 628
Query: 1458 GHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ 1517
G T R I+ +N+ S F FLL+ RAGG+G+ L AD VI+FD+DWNPQ+DLQAQ
Sbjct: 629 GSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQ 688
Query: 1518 ARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREY 1576
RAHRIGQ + V V RF T ++EE++ AE KL + I G + N +A+ E
Sbjct: 689 DRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGRLVEANKNAKP--EE 746
Query: 1577 LESLLR 1582
L ++LR
Sbjct: 747 LLAMLR 752
Score = 453 (164.5 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 112/368 (30%), Positives = 181/368 (49%)
Query: 931 EAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINL-LK--INDVE 987
EA ERL+ + ++++ER + + + ++ + E+ R+++ + + N LK + E
Sbjct: 125 EARNERLESI-RLEKERLKQIREQQRKQLQELEKNQRQQLQEDKEKSANARLKYLLERTE 183
Query: 988 GYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEP 1047
+ V ++ + N K+T+ L S A S ++ N + + S K
Sbjct: 184 IFTHFVSNSNN---NNNTKKTKTKSPVLSSS--SASSSNNNNNNNNNGSIVSSTPTKRGH 238
Query: 1048 AVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
E ++ +E E HS S P ++ G +R+YQ+ GL WL+ LY
Sbjct: 239 ITEEAEDEAIMNETMEEEEP-----HSFNFFTSSPPY-IKSGTMRDYQVYGLNWLIQLYE 292
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIH 1167
+NGILADEMGLGKT+Q I+L+ YL E K RGP GW E W P +
Sbjct: 293 RGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAPKSTLSGWAKEFTRWCPFLR 352
Query: 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227
+ + G EER + K +++ +KF+V +TTYE + ++ K W YIIIDE HRIK
Sbjct: 353 VVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIR--EKSTFKKFSWRYIIIDEAHRIK 410
Query: 1228 NASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFE 1287
N + L+ ++ + S RLL+TGTP +F+SS+DF +WF+
Sbjct: 411 NENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFD--LA 468
Query: 1288 SNGDNSPD 1295
+N +N +
Sbjct: 469 NNTENQQE 476
Score = 55 (24.4 bits), Expect = 3.6e-96, Sum P(2) = 3.6e-96
Identities = 20/90 (22%), Positives = 33/90 (36%)
Query: 135 GHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ 194
G + +G QS + ++ T +++S S K + + S S E
Sbjct: 7 GRNEVSTNGKTSPPQSTTPTTTTTTTTTTSSSSSSVGNKRNESPTISSSGNQSPKSMEND 66
Query: 195 NENPQQLDSRNSVVNPRKGKMNKVDAPGGF 224
NEN + V+ + N DAP F
Sbjct: 67 NENEEDEVMEEEEVDDNEENGNDEDAPHPF 96
Score = 41 (19.5 bits), Expect = 1.1e-94, Sum P(2) = 1.1e-94
Identities = 25/124 (20%), Positives = 52/124 (41%)
Query: 106 DSKAGLAENEMS---KIEPFTSSRPPVAPSGAGHDYYQAS--GTHRSSQ----SFDHESP 156
DSK NE+S K P S+ P + +S G R+ S ++SP
Sbjct: 2 DSK-NKGRNEVSTNGKTSPPQSTTPTTTTTTTTTTSSSSSSVGNKRNESPTISSSGNQSP 60
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR-KGKM 215
S++ + N + + +++ + + G+ + P ++ Q+D + +P + +
Sbjct: 61 KSMENDNENEEDEVMEEE--EVDDNEENGNDEDAPHPFFDD-DQVDDDEDLNDPTIQNGI 117
Query: 216 NKVD 219
N+ D
Sbjct: 118 NRKD 121
Score = 39 (18.8 bits), Expect = 1.8e-94, Sum P(2) = 1.8e-94
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 264 QNVTEKPLDSANVSNSVPRAS-NSKFPEEVEVSASGQQQGNSLSSAN 309
Q+ T + + S +S +K E +S+SG Q S+ + N
Sbjct: 21 QSTTPTTTTTTTTTTSSSSSSVGNKRNESPTISSSGNQSPKSMENDN 67
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 922 (329.6 bits), Expect = 4.3e-96, Sum P(3) = 4.3e-96
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 289
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 290 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 347
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 348 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 393
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 394 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 452
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 453 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 508
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 509 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL 568
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 569 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 628
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 629 SIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 478 (173.3 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVG 139
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 140 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 192
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 193 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWV 252
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 253 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 310
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 371 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 421
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 422 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 462
Score = 50 (22.7 bits), Expect = 4.3e-96, Sum P(3) = 4.3e-96
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 73 IQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 115
Score = 42 (19.8 bits), Expect = 4.3e-96, Sum P(3) = 4.3e-96
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 264 QNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGN 303
++ KP +A ++SV +SN PE V A+ G+
Sbjct: 14 ESALSKP--AAPAASSVSNSSNKGGPEGVAAQATPSAAGS 51
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 921 (329.3 bits), Expect = 5.6e-96, Sum P(3) = 5.6e-96
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 288
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 289 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 346
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 347 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 392
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 393 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 451
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 452 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 507
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 508 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL 567
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 568 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 627
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 628 SIVIQQGRLVDQNLNKIGKDEMLQMI 653
Score = 478 (173.3 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 79 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVG 138
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 139 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 191
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 192 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWV 251
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 252 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 309
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 310 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 369
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 370 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 420
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 421 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 461
Score = 50 (22.7 bits), Expect = 5.6e-96, Sum P(3) = 5.6e-96
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 72 IQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 114
Score = 42 (19.8 bits), Expect = 5.6e-96, Sum P(3) = 5.6e-96
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 525 PSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGP 578
P SAP + G G++ P GG++ + + E ++ D P
Sbjct: 13 PESAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPSATGAGPADTEMEEVFDDGSP 66
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 922 (329.6 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 289
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 290 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 347
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 348 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 393
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 394 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 452
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 453 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 508
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 509 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL 568
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 569 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 628
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 629 SIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 478 (173.3 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVG 139
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 140 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 192
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 193 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWV 252
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 253 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 310
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 371 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 421
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 422 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 462
Score = 51 (23.0 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
M F+N Q +++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 58 MEEVFDNASPGKQ--KEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 115
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 929 (332.1 bits), Expect = 5.1e-94, Sum P(2) = 5.1e-94
Identities = 203/516 (39%), Positives = 298/516 (57%)
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
++E P+ ++ GKLREYQ+ GL WL+SLY N+L+GILADEMGLGKT+Q I+ + YL K+
Sbjct: 127 MTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKH 186
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E W P ++ +V G E+R + K+++ KF+VL+T++
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSF 246
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXX 1258
E ++ ++ L K +W YI++DE HRIKN L+ ++ + S +RLL+TGTP
Sbjct: 247 EMILR--EKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLH 304
Query: 1259 XXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPF 1318
+F S+ F + F+ N + + ++ LHQ+L PF
Sbjct: 305 ELWALLNFLLPDVFGDSDQFDEAFDN---QNSEELDEEEKQRRQDKA--VSELHQLLSPF 359
Query: 1319 VLRRLKHKVENELPEKIER-----LVRCEASAYQKLLMKRVEENLGSIGNSKGRS-VHNS 1372
+LRR+K VE L KIE + + Y++LL K ++ G +G +G++ + N
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNI 419
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFF 1432
VM+LR CNHPYL AE +L V GK+ +LD++L K KA RVL F
Sbjct: 420 VMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNSGKMIILDKMLKKFKAEGSRVLIF 475
Query: 1433 STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
S M+R+LD++EDY F+ Y Y R+DG TS DR ID++N DS FIFLL+ RAGG+G
Sbjct: 476 SQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLG 535
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+NL +AD VI++D+DWNPQ DLQA RAHRIGQK+ V V RF T + +EE+V A KL
Sbjct: 536 INLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKL 595
Query: 1553 GVANQSITAGF-FDNNTSAEDRREYLESLLRECKKE 1587
+ I G ++N + + ++ L +++ KE
Sbjct: 596 RLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKE 631
Score = 43 (20.2 bits), Expect = 5.1e-94, Sum P(2) = 5.1e-94
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SS +++ + E+++D + + + D H E+P +
Sbjct: 90 SSKKAKNSRRRKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYI 134
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 929 (332.1 bits), Expect = 5.1e-94, Sum P(2) = 5.1e-94
Identities = 203/516 (39%), Positives = 298/516 (57%)
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
++E P+ ++ GKLREYQ+ GL WL+SLY N+L+GILADEMGLGKT+Q I+ + YL K+
Sbjct: 127 MTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKH 186
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E W P ++ +V G E+R + K+++ KF+VL+T++
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSF 246
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXX 1258
E ++ ++ L K +W YI++DE HRIKN L+ ++ + S +RLL+TGTP
Sbjct: 247 EMILR--EKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLH 304
Query: 1259 XXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPF 1318
+F S+ F + F+ N + + ++ LHQ+L PF
Sbjct: 305 ELWALLNFLLPDVFGDSDQFDEAFDN---QNSEELDEEEKQRRQDKA--VSELHQLLSPF 359
Query: 1319 VLRRLKHKVENELPEKIER-----LVRCEASAYQKLLMKRVEENLGSIGNSKGRS-VHNS 1372
+LRR+K VE L KIE + + Y++LL K ++ G +G +G++ + N
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNI 419
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFF 1432
VM+LR CNHPYL AE +L V GK+ +LD++L K KA RVL F
Sbjct: 420 VMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNSGKMIILDKMLKKFKAEGSRVLIF 475
Query: 1433 STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
S M+R+LD++EDY F+ Y Y R+DG TS DR ID++N DS FIFLL+ RAGG+G
Sbjct: 476 SQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLG 535
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+NL +AD VI++D+DWNPQ DLQA RAHRIGQK+ V V RF T + +EE+V A KL
Sbjct: 536 INLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKL 595
Query: 1553 GVANQSITAGF-FDNNTSAEDRREYLESLLRECKKE 1587
+ I G ++N + + ++ L +++ KE
Sbjct: 596 RLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKE 631
Score = 43 (20.2 bits), Expect = 5.1e-94, Sum P(2) = 5.1e-94
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SS +++ + E+++D + + + D H E+P +
Sbjct: 90 SSKKAKNSRRRKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYI 134
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 922 (329.6 bits), Expect = 5.5e-94, Sum P(2) = 5.5e-94
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 289
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 290 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 347
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 348 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 393
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 394 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 452
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 453 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 508
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 509 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL 568
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 569 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 628
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 629 SIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 478 (173.3 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVG 139
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 140 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 192
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 193 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWV 252
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 253 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 310
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 371 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 421
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 422 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 462
Score = 50 (22.7 bits), Expect = 5.5e-94, Sum P(2) = 5.5e-94
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 73 IQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 115
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 921 (329.3 bits), Expect = 7.0e-94, Sum P(2) = 7.0e-94
Identities = 204/506 (40%), Positives = 289/506 (57%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+ P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W SE W P + + G E+R ++ ++ +++V +T+YE
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEM 289
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 290 LIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 347
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+FNS++DF WF+ GD ++ RLH VLRPF+L
Sbjct: 348 WSLLNFLLPDVFNSADDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLL 393
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375
RR+K VE LP K E L + + Y ++LMK ++ L S G + N +M+
Sbjct: 394 RRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILMQ 452
Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
LR CNHPYL AE +L V GK+ +LD+LLPKLK RVL FS M
Sbjct: 453 LRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 508
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS RAGG+G+NL
Sbjct: 509 TRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL 568
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL +
Sbjct: 569 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLD 628
Query: 1556 NQSITAG-FFDNNTSAEDRREYLESL 1580
+ I G D N + + E L+ +
Sbjct: 629 SIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 478 (173.3 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 123/402 (30%), Positives = 196/402 (48%)
Query: 989 YLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTVSVVE 1043
Y +Q +++R LLK+TE ++Q K + K + DE Q + V
Sbjct: 80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVG 139
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
Y E E D+ L + K A ++ + P+ ++ GKLR+YQ+ GL WL+
Sbjct: 140 DYRHR-RTEQEEDE--ELLTESSK----ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLI 192
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W SE W
Sbjct: 193 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWV 252
Query: 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223
P + + G E+R ++ ++ +++V +T+YE L+ ++ K W Y++IDE
Sbjct: 253 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEA 310
Query: 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN 1283
HRIKN KL+ ++ +++++RLLLTGTP +FNS++DF WF+
Sbjct: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
Query: 1284 KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
GD ++ R+ + V + L K E ++ + ++ R
Sbjct: 371 TN-NCLGDQKL-VERLHMVLRPFLLRRI----KADVEKSLPPKKEVKIYVGLSKMQR--- 421
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 422 EWYTRILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 462
Score = 50 (22.7 bits), Expect = 7.0e-94, Sum P(2) = 7.0e-94
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+++ +P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 73 IQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPT 115
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 925 (330.7 bits), Expect = 4.7e-93, Sum P(2) = 4.7e-93
Identities = 210/549 (38%), Positives = 305/549 (55%)
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAH--SIKE--SVSEQPTCLQGGKLREYQMSG 1098
+K + + +D +D E E L+A + KE P ++ G++R+YQ+ G
Sbjct: 76 KKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRG 135
Query: 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESE 1158
L W++SLY N +NGILADEMGLGKT+Q I+L+ YL KN GP W +E
Sbjct: 136 LNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNE 195
Query: 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218
W P + + G + R ++ ++ +++V +T+YE + ++ K W Y+
Sbjct: 196 FKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIR--EKSVFKKFNWRYL 253
Query: 1219 IIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDF 1278
+IDE HRIKN KL+ L+ +++++RLL+TGTP +FNSSEDF
Sbjct: 254 VIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDF 313
Query: 1279 SQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER- 1337
+WFN GD++ +I RLH VL+PF+LRRLK +VE L K E
Sbjct: 314 DEWFNTN-TCLGDDA-------------LITRLHAVLKPFLLRRLKAEVEKRLKPKKEMK 359
Query: 1338 ----LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393
L + + Y K+L+K ++ G+ G + + N +M+LR NHPYL AE
Sbjct: 360 IFVGLSKMQRDWYTKVLLKDIDVVNGA-GKVEKMRLQNILMQLRKCTNHPYLFD-GAEPG 417
Query: 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRY 1453
+L V GK+ +LD+LLPKL+ RVL FS MTR+LD++EDY ++ Y Y
Sbjct: 418 PPYTTDTHL---VYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNY 474
Query: 1454 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVD 1513
RLDG T DR I +FN +S F+F+LS RAGG+G+NL AD VII+D+DWNPQ+D
Sbjct: 475 CRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMD 534
Query: 1514 LQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR 1573
LQA RAHRIGQK+ V V R T TVEE++ AE KL + I G +N S +
Sbjct: 535 LQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLN 594
Query: 1574 REYLESLLR 1582
++ + +++R
Sbjct: 595 KDEMLNIIR 603
Score = 38 (18.4 bits), Expect = 4.7e-93, Sum P(2) = 4.7e-93
Identities = 13/67 (19%), Positives = 32/67 (47%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPR 211
++ + ++ D +++S +E + D K + + +R D + + + +S S P
Sbjct: 14 ENSNETTSDAATSSSGEKEAEFDNKIEADRSRRFDFLLK-QTEIFTHFMTNSAKSPTKP- 71
Query: 212 KGKMNKV 218
KG+ K+
Sbjct: 72 KGRPKKI 78
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 923 (330.0 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
Identities = 213/517 (41%), Positives = 297/517 (57%)
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
A S+ + P+ ++ GKLR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+
Sbjct: 144 ATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG 203
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191
Y+ +N GP W +E W P + + G EER ++ ++ ++
Sbjct: 204 YMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIGDREERTAFIRDTLLPGEW 263
Query: 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
+V +T+YE L+ +R K W Y++IDE HRIKN KL+ ++ +++++RLLLTGT
Sbjct: 264 DVCVTSYEMLII--ERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 321
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P +FNSSEDF WF+ GD ++ RL
Sbjct: 322 PLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTN-NCLGDTK-------------LVERL 367
Query: 1312 HQVLRPFVLRRLKHKVENEL-PEKIER----LVRCEASAYQKLLMKRVEENLGSIGNSKG 1366
H VLRPF+LRR+K VE L P+K + L + + Y K+LMK ++ L S G
Sbjct: 368 HTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDIDI-LNSAGKMDK 426
Query: 1367 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
+ N +M+LR CNHPYL AE +L +V GK+ +LD+LLPKLK
Sbjct: 427 MRLLNVLMQLRKCCNHPYLFD-GAEPGPPYTTDLHL--VVN-SGKMVVLDKLLPKLKEQG 482
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+ FN+ +S F+F+LS
Sbjct: 483 SRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLST 542
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL AD VII+D+DWNPQVDLQA RAHRIGQK+ V V RF T TVEE++
Sbjct: 543 RAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVE 602
Query: 1547 SAEHKLGVANQSITAG-FFDNNTSAEDRREYLESLLR 1582
AE KL + + I G D + + + E L S++R
Sbjct: 603 RAEMKLRLDSIVIQQGRLVDPSMNKLGKDEML-SIIR 638
Score = 496 (179.7 bits), Expect = 5.6e-42, Sum P(2) = 5.6e-42
Identities = 129/404 (31%), Positives = 198/404 (49%)
Query: 988 GYLRMVQDAKSDRVNKLLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTV-SV 1041
GY VQ +++R LLK+TE ++Q K + K + DE Q + S
Sbjct: 62 GYEEKVQTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSA 121
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRW 1101
+ E E++ + L N K A S+ + P+ ++ GKLR+YQ+ GL W
Sbjct: 122 GDNRHRRTEQEEDEE----LLSENSK----ATSVCTRFDDSPSYVKTGKLRDYQVRGLNW 173
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP W +E
Sbjct: 174 LISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKR 233
Query: 1162 WAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIID 1221
W P + + G EER ++ ++ +++V +T+YE L+ +R K W Y++ID
Sbjct: 234 WVPSLKAVCLIGDREERTAFIRDTLLPGEWDVCVTSYEMLII--ERAVFKKFNWRYLVID 291
Query: 1222 EGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQW 1281
E HRIKN KL+ ++ +++++RLLLTGTP +FNSSEDF W
Sbjct: 292 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAW 351
Query: 1282 FNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRC 1341
F+ GD ++ R+ + +L + + K+ L K++R
Sbjct: 352 FDTN-NCLGDTKL-VERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGL-SKMQR---- 404
Query: 1342 EASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
Y K+LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 405 --EWYTKILMKDIDI-LNSAGKMDKMRLLNVLMQLRKCCNHPYL 445
Score = 40 (19.1 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
Identities = 14/69 (20%), Positives = 31/69 (44%)
Query: 161 TRSANSQSQERQKDGKKASTKRKRGD--SSISHEPQNENPQQLDSRNSVVNPRKGKMNKV 218
+++ +S Q+R+++ + D S H+ ++ ++++S KGK
Sbjct: 2 SQTESSMEQQREEEPSQLDPAGPAEDDTSENGHDEASDTAMDSEAQSSSPPSAKGK---- 57
Query: 219 DAPGGFSVK 227
D GG+ K
Sbjct: 58 DLLGGYEEK 66
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 907 (324.3 bits), Expect = 1.9e-92, Sum P(2) = 1.9e-92
Identities = 208/529 (39%), Positives = 295/529 (55%)
Query: 1063 ESNEKYYLMAHSIKES-----VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADE 1117
E E L++ S K S E P+ ++GG LR+YQ+ GL W++SLY N +NGILADE
Sbjct: 74 EQEEDEELLSESRKTSNVCIRFEESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILADE 133
Query: 1118 MGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEE 1177
MGLGKT+Q IAL+ YL +N GP W +E W P + + G +
Sbjct: 134 MGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDKDA 193
Query: 1178 RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237
R ++ ++ +++V +T+YE ++ ++ K W Y++IDE HRIKN KL+ +
Sbjct: 194 RAAFIRDVMMPGEWDVCVTSYEMVIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIV 251
Query: 1238 KHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXX 1297
+ +++++RLLLTGTP +FNS++DF WF+ GD
Sbjct: 252 REFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NCLGDQK---- 306
Query: 1298 XXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMK 1352
++ RLH VL+PF+LRR+K +VE LP K E L + + Y ++LMK
Sbjct: 307 ---------LVERLHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMK 357
Query: 1353 RVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKL 1412
++ L S G + N +M+LR CNHPYL AE +L + GK+
Sbjct: 358 DIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDTHL---ITNSGKM 412
Query: 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472
+LD+LL KL+ RVL FS MTRLLD++EDY ++ Y Y RLDG T +R ID F
Sbjct: 413 LVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTF 472
Query: 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532
N +S FIF+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQK+ V V
Sbjct: 473 NAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 532
Query: 1533 RFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 533 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMI 581
Score = 51 (23.0 bits), Expect = 1.9e-92, Sum P(2) = 1.9e-92
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
++ +P E + ++D+AK + ++ L AH I+ + + PT
Sbjct: 1 KEVDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPAAQKSPT 42
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 929 (332.1 bits), Expect = 2.0e-92, P = 2.0e-92
Identities = 225/616 (36%), Positives = 327/616 (53%)
Query: 984 NDVE-GYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVV 1042
ND G + +Q+A K+ + + L L++ + A + +T T +
Sbjct: 48 NDASPGKPKEIQEADPTYEEKMQTDRANRFEYL---LKQTELFAHFIQPAAQKTPTSPLK 104
Query: 1043 EKY-EPAVENEDES------DQAKHYLESNEKYYLMAHSIKES-----VSEQPTCLQGGK 1090
K P ++ +++ D E E L+ S K + E P+ ++ GK
Sbjct: 105 MKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKTTNVCTRFEESPSYVKWGK 164
Query: 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXX 1150
LR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q I+L+ Y+ +N GP
Sbjct: 165 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 224
Query: 1151 XXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210
W +E W P + + G ++R ++ ++ +++V +T+YE L+ ++
Sbjct: 225 TLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK--EKSVF 282
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXX 1270
K W Y++IDE HRIKN KL+ ++ +++++RLLLTGTP
Sbjct: 283 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPD 342
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENE 1330
+FNSSEDF WF+ GD ++ RLH VLRPF+LRR+K VE
Sbjct: 343 VFNSSEDFDSWFDTN-NCLGDQK-------------LVERLHMVLRPFLLRRIKADVEKS 388
Query: 1331 LPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
LP K E L + + Y ++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 389 LPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKLDKMRLLNILMQLRKCCNHPYL 447
Query: 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 1445
AE +L V GK+ +LD+LLPKLK RVL FS MTR+LD++EDY
Sbjct: 448 FD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 503
Query: 1446 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 1505
++ Y Y RLDG T +R A I+ +N+ S F+F+LS RAGG+G+NL AD VI++D
Sbjct: 504 CMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYD 563
Query: 1506 TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FF 1564
+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++ AE KL + + I G
Sbjct: 564 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 623
Query: 1565 DNNTSAEDRREYLESL 1580
D N + + E L+ +
Sbjct: 624 DQNLNKLGKDEMLQMI 639
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 934 (333.8 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 208/527 (39%), Positives = 304/527 (57%)
Query: 1063 ESNEKYYLMAHSIKES---VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMG 1119
E E + L+ + +E + +QP + G ++ YQ+ GL WL LY ++NGILADEMG
Sbjct: 292 EKEEDFMLLKDANEEDEAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMG 350
Query: 1120 LGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR 1179
LGKT+Q I+L+CYL KN + W EI W + Y G ++R+
Sbjct: 351 LGKTLQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRK 410
Query: 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239
L ++H F+VLLTTYE ++ D+ L I W +++IDE HRIKN L++ ++
Sbjct: 411 EL-NRNLLHSDFDVLLTTYEIVIK--DKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF 467
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
+S +RLL+TGTP IF++SE+F FN S DN
Sbjct: 468 LRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSE--- 524
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV-----RCEASAYQKLLMKRV 1354
II +LH +L+PF+LRRLK +VE LP K E + + + Y +L K +
Sbjct: 525 -------IITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI 577
Query: 1355 EENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEM 1414
+ L ++ SK + + N +M+LR CNHPYL EE + H ++ GK+ +
Sbjct: 578 DV-LNAMTGSKNQML-NILMQLRKCCNHPYLFD-GIEEPPYIEGNH----LIETSGKMSL 630
Query: 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474
LD+LLP+LK + RVL FS MTRLLD+++DY +K Y YLR+DG T G +R I++FN+
Sbjct: 631 LDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNE 690
Query: 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 1534
+S +FIFLLS RAGG+G+NL AD VI+FD+D+NPQ+D+QA RAHRIGQK+ V+V RF
Sbjct: 691 PNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRF 750
Query: 1535 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
T +VEE++ A KL + + I G + N++ E+ ++ L +L
Sbjct: 751 VTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDIL 797
Score = 58 (25.5 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 23/87 (26%), Positives = 35/87 (40%)
Query: 135 GHDYYQASGTHRS-----SQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSI 189
G+D HR+ S+D + S LD NS E+ D K KRK + S
Sbjct: 96 GNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEENS---EQMNDNMK---KRKLNEISY 149
Query: 190 SHEPQNENPQQLDSRNSVVNPRKGKMN 216
+ ++E + D + + KG N
Sbjct: 150 DNNEEDEFRNKKDDSMEMNDKEKGSTN 176
Score = 48 (22.0 bits), Expect = 3.4e-91, Sum P(3) = 3.4e-91
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 139 YQASGTHRSSQSFDHESPSSLDTRSA-NSQSQE--RQKDGKKASTKRKRGDSSISHEPQN 195
Y + S Q D+ L+ S N++ E +KD +++G +++S N
Sbjct: 124 YLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDN 183
Query: 196 ENPQQLDSRN 205
N DS N
Sbjct: 184 NNNHNDDSNN 193
Score = 47 (21.6 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 999 DRVNKLLKETEKYLQKL-GSKLQEAKSMAS 1027
+++ +LL +T++Y +KL G +L+ M S
Sbjct: 253 EKLEQLLAQTKRYTEKLAGQRLKMNAQMKS 282
Score = 46 (21.3 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 23/120 (19%), Positives = 44/120 (36%)
Query: 159 LDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN-K 217
LD + N S + K+G + + S E N+N + ++ N + K
Sbjct: 61 LDLKKLNVSSNDITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDK 120
Query: 218 VDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVS 277
+ + + +EQ N NM ++ S + K + + +K S N+S
Sbjct: 121 RKSYLDNNEENSEQMNDNMKKR--KLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMS 178
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 934 (333.8 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 208/527 (39%), Positives = 304/527 (57%)
Query: 1063 ESNEKYYLMAHSIKES---VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMG 1119
E E + L+ + +E + +QP + G ++ YQ+ GL WL LY ++NGILADEMG
Sbjct: 292 EKEEDFMLLKDANEEDEAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMG 350
Query: 1120 LGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR 1179
LGKT+Q I+L+CYL KN + W EI W + Y G ++R+
Sbjct: 351 LGKTLQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRK 410
Query: 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239
L ++H F+VLLTTYE ++ D+ L I W +++IDE HRIKN L++ ++
Sbjct: 411 EL-NRNLLHSDFDVLLTTYEIVIK--DKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF 467
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
+S +RLL+TGTP IF++SE+F FN S DN
Sbjct: 468 LRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSE--- 524
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV-----RCEASAYQKLLMKRV 1354
II +LH +L+PF+LRRLK +VE LP K E + + + Y +L K +
Sbjct: 525 -------IITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI 577
Query: 1355 EENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEM 1414
+ L ++ SK + + N +M+LR CNHPYL EE + H ++ GK+ +
Sbjct: 578 DV-LNAMTGSKNQML-NILMQLRKCCNHPYLFD-GIEEPPYIEGNH----LIETSGKMSL 630
Query: 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474
LD+LLP+LK + RVL FS MTRLLD+++DY +K Y YLR+DG T G +R I++FN+
Sbjct: 631 LDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNE 690
Query: 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 1534
+S +FIFLLS RAGG+G+NL AD VI+FD+D+NPQ+D+QA RAHRIGQK+ V+V RF
Sbjct: 691 PNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRF 750
Query: 1535 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 1581
T +VEE++ A KL + + I G + N++ E+ ++ L +L
Sbjct: 751 VTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDIL 797
Score = 58 (25.5 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 23/87 (26%), Positives = 35/87 (40%)
Query: 135 GHDYYQASGTHRS-----SQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSI 189
G+D HR+ S+D + S LD NS E+ D K KRK + S
Sbjct: 96 GNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEENS---EQMNDNMK---KRKLNEISY 149
Query: 190 SHEPQNENPQQLDSRNSVVNPRKGKMN 216
+ ++E + D + + KG N
Sbjct: 150 DNNEEDEFRNKKDDSMEMNDKEKGSTN 176
Score = 48 (22.0 bits), Expect = 3.4e-91, Sum P(3) = 3.4e-91
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 139 YQASGTHRSSQSFDHESPSSLDTRSA-NSQSQE--RQKDGKKASTKRKRGDSSISHEPQN 195
Y + S Q D+ L+ S N++ E +KD +++G +++S N
Sbjct: 124 YLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDN 183
Query: 196 ENPQQLDSRN 205
N DS N
Sbjct: 184 NNNHNDDSNN 193
Score = 47 (21.6 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 999 DRVNKLLKETEKYLQKL-GSKLQEAKSMAS 1027
+++ +LL +T++Y +KL G +L+ M S
Sbjct: 253 EKLEQLLAQTKRYTEKLAGQRLKMNAQMKS 282
Score = 46 (21.3 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 23/120 (19%), Positives = 44/120 (36%)
Query: 159 LDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN-K 217
LD + N S + K+G + + S E N+N + ++ N + K
Sbjct: 61 LDLKKLNVSSNDITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDK 120
Query: 218 VDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVS 277
+ + + +EQ N NM ++ S + K + + +K S N+S
Sbjct: 121 RKSYLDNNEENSEQMNDNMKKR--KLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMS 178
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 922 (329.6 bits), Expect = 1.2e-91, P = 1.2e-91
Identities = 222/622 (35%), Positives = 339/622 (54%)
Query: 974 QREKINLLKINDVEGYLRMVQDAKSD---RVNKLLKETEKYLQKLGSKLQEAKS---MAS 1027
QR+K +L ++ Y + Q KSD R LL T+ + +G K + K+ +
Sbjct: 65 QRKKKFVLDVDPK--YAK--QKDKSDTYKRFKYLLGVTDLFRHFIGIKAKHDKNIQKLLK 120
Query: 1028 HFENEMDE-TQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCL 1086
+++ ++ +++ S V + E ++ + E+ + + VSE P+ +
Sbjct: 121 QLDSDANKLSKSHSTVSS-SSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFV 179
Query: 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXX 1146
+ GKLR+YQ+ GL WL+SL+ N+L+GILADEMGLGKT+Q I+ + YL K GPF
Sbjct: 180 KSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLII 239
Query: 1147 XXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD 1206
W E W P ++ +V G + R + + I+ +F+VL+T+YE ++ +
Sbjct: 240 VPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIR--E 297
Query: 1207 RPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXX 1266
+ L ++ W YI+IDE HRIKN L+ ++ + S +RLL+TGTP
Sbjct: 298 KNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNF 357
Query: 1267 XXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHK 1326
IF SE F +WF ++N + + +I +LH VL PF+LRR+K
Sbjct: 358 LLPDIFGDSELFDEWFE---QNNSEQDQEI----------VIQQLHSVLNPFLLRRVKAD 404
Query: 1327 VENELPEKIER-----LVRCEASAYQKLLMKRVEENLGSIGNSKGRS-VHNSVMELRNIC 1380
VE L KIE + + Y+ LL K ++ G++G +G++ + N VM+LR C
Sbjct: 405 VEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCC 464
Query: 1381 NHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD 1440
NHPYL + AE +L + GK+ +LD+LL +LK RVL FS M+RLLD
Sbjct: 465 NHPYLFE-GAEPGPPYTTDEHL---IFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLD 520
Query: 1441 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 1500
++EDY F+ + Y R+DG TS +R ID++N+ +S F+FLL+ RAGG+G+NL ADT
Sbjct: 521 ILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADT 580
Query: 1501 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560
VI+FD+DWNPQ DLQA RAHRIGQK+ V V RF T +EE+V A KL + I
Sbjct: 581 VILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640
Query: 1561 AGFFDNNTSAEDRREYLESLLR 1582
G S + ++ L +++
Sbjct: 641 QGTGKKTASLGNSKDDLLDMIQ 662
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 921 (329.3 bits), Expect = 1.5e-91, P = 1.5e-91
Identities = 219/580 (37%), Positives = 316/580 (54%)
Query: 1019 LQEAKSMASHFENEMDETQTVSV-VEKYEPAVENEDESD--QAKHY----LESNEKYYLM 1071
L++ + A + ++ T + ++ P ++ +D+ A Y E E L+
Sbjct: 102 LKQTELFAHFIQPSAQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELL 161
Query: 1072 AHSIKES-----VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV 1126
+ S K S P+ ++GG LR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q
Sbjct: 162 SESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQT 221
Query: 1127 IALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186
IAL+ YL +N GP W +E W P + I + G + R ++++
Sbjct: 222 IALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEM 281
Query: 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL 1246
+ +++V +T+YE ++ ++ K W Y++IDE HRIKN KL+ ++ ++S++RL
Sbjct: 282 MPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRL 339
Query: 1247 LLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXX 1306
LLTGTP +FNS++DF WF+ GD
Sbjct: 340 LLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NCLGDQK------------- 385
Query: 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSI 1361
++ RLH VL+PF+LRR+K VE LP K E L + + Y K+LMK ++ L S
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDV-LNSA 444
Query: 1362 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 1421
G + N +M+LR CNHPYL AE + IV GK+ +LD+LL K
Sbjct: 445 GKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSGKMVVLDKLLAK 500
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
LK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R I+ FN +S FI
Sbjct: 501 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFI 560
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V V R T TVE
Sbjct: 561 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Query: 1542 EQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
E++ AE KL + + I G D ++ + E L+ +
Sbjct: 621 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMI 660
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 921 (329.3 bits), Expect = 1.5e-91, P = 1.5e-91
Identities = 219/580 (37%), Positives = 316/580 (54%)
Query: 1019 LQEAKSMASHFENEMDETQTVSV-VEKYEPAVENEDESD--QAKHY----LESNEKYYLM 1071
L++ + A + ++ T + ++ P ++ +D+ A Y E E L+
Sbjct: 102 LKQTELFAHFIQPSAQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEELL 161
Query: 1072 AHSIKES-----VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV 1126
+ S K S P+ ++GG LR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q
Sbjct: 162 SESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQT 221
Query: 1127 IALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186
IAL+ YL +N GP W +E W P + I + G + R ++++
Sbjct: 222 IALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEM 281
Query: 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL 1246
+ +++V +T+YE ++ ++ K W Y++IDE HRIKN KL+ ++ ++S++RL
Sbjct: 282 MPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRL 339
Query: 1247 LLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXX 1306
LLTGTP +FNS++DF WF+ GD
Sbjct: 340 LLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NCLGDQK------------- 385
Query: 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSI 1361
++ RLH VL+PF+LRR+K VE LP K E L + + Y K+LMK ++ L S
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDV-LNSA 444
Query: 1362 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 1421
G + N +M+LR CNHPYL AE + IV GK+ +LD+LL K
Sbjct: 445 GKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSGKMVVLDKLLAK 500
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
LK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R I+ FN +S FI
Sbjct: 501 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFI 560
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V V R T TVE
Sbjct: 561 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Query: 1542 EQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
E++ AE KL + + I G D ++ + E L+ +
Sbjct: 621 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMI 660
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 915 (327.2 bits), Expect = 6.7e-91, P = 6.7e-91
Identities = 219/580 (37%), Positives = 313/580 (53%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKY-EPAVENEDES------DQAKHYLESNEKYYLM 1071
L++ + A + ++ T + K P V+ +D+ D E E L+
Sbjct: 103 LKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELL 162
Query: 1072 AHSIKES-----VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV 1126
+ S K S P+ ++GG LR+YQ+ GL WL+SLY N +NGILADEMGLGKT+Q
Sbjct: 163 SESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQT 222
Query: 1127 IALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186
IAL+ YL +N GP W +E W P + I + G + R ++++
Sbjct: 223 IALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEM 282
Query: 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL 1246
+ +++V +T+YE ++ ++ K W Y++IDE HRIKN KL+ ++ ++S++RL
Sbjct: 283 MPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRL 340
Query: 1247 LLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXX 1306
LLTGTP +FNS++DF WF+ GD
Sbjct: 341 LLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NCLGDQK------------- 386
Query: 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSI 1361
++ RLH VL+PF+LRR+K VE LP K E L + + Y K+LMK ++ L S
Sbjct: 387 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDV-LNSS 445
Query: 1362 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 1421
G + N +M+LR CNHPYL AE + IV GK+ LD+LL +
Sbjct: 446 GKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVGNSGKMVALDKLLAR 501
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
+K RVL FS MTRLLD++EDY ++ Y Y RLDG T +R ID FN +S FI
Sbjct: 502 IKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFI 561
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V V R T TVE
Sbjct: 562 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Query: 1542 EQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
E++ AE KL + + I G D ++ + E L+ +
Sbjct: 622 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 661
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 912 (326.1 bits), Expect = 1.4e-90, P = 1.4e-90
Identities = 227/602 (37%), Positives = 324/602 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
K+DR + LLK+TE + + Q KS S ++ + + + + ++ +
Sbjct: 97 KADRAKRFEFLLKQTELFAHFIQPSAQ--KSPTSPLNMKLGRPR---IKKDDKQSLISAG 151
Query: 1054 ESDQAKHY-LESNEKYYLMAHSIKES-----VSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
E +H E E L++ S K S P+ ++GG LR+YQ+ GL WL+SLY
Sbjct: 152 EYFSYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYE 211
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIH 1167
N +NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 212 NGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLR 271
Query: 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIK
Sbjct: 272 VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIK 329
Query: 1228 NASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFE 1287
N KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 330 NEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-N 388
Query: 1288 SNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA-- 1345
GD ++ RLH VL+PF+LRR+K VE LP K E V S
Sbjct: 389 CLGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQ 435
Query: 1346 ----YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 436 REWWYTKILMKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH 493
Query: 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 1461
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 494 ---IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTP 550
Query: 1462 GGDRGA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 1519
+R I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA R
Sbjct: 551 HEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 610
Query: 1520 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLE 1578
AHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L+
Sbjct: 611 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQ 670
Query: 1579 SL 1580
+
Sbjct: 671 MI 672
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 906 (324.0 bits), Expect = 6.3e-90, P = 6.3e-90
Identities = 203/508 (39%), Positives = 289/508 (56%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
E P +QG +R+YQ++GL WL+SL+ N ++GILADEMGLGKT+Q I+ + YL
Sbjct: 177 ESPAFIQG-TMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMGIT 235
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP W+ E W P ++ +V G EER L E++V + F+V +T+YE
Sbjct: 236 GPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERLVDESFDVCITSYEM 295
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXX 1260
++ ++ L K W YIIIDE HRIKN L ++ + S +RLL+TGTP
Sbjct: 296 ILR--EKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHEL 353
Query: 1261 XXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+F SE F QWF+ G +S ++ +LH+VLRPF+L
Sbjct: 354 WALLNFLLPDVFGDSEAFDQWFS----GEGQDSD-----------TVVQQLHRVLRPFLL 398
Query: 1321 RRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRS-VHNSVM 1374
RR+K VE L K E ++ + + YQK+L K ++ G+ G + ++ + N VM
Sbjct: 399 RRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIVM 458
Query: 1375 ELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFST 1434
+LR CNHPYL + AE +L V GK+ +LD+LL +LKA RVL FS
Sbjct: 459 QLRKCCNHPYLFE-GAEPGPPYTTDEHL---VYNSGKMVVLDKLLKRLKAQGSRVLIFSQ 514
Query: 1435 MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN 1494
M+R+LD++EDY F++Y+Y R+DG T+ DR A ID++N+ S F+FLL+ RAGG+G+N
Sbjct: 515 MSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGIN 574
Query: 1495 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554
L AD VI+FD+DWNPQ DLQA RAHRIGQ + V V RF T+EE+V A KL +
Sbjct: 575 LTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHL 634
Query: 1555 ANQSITAGFFDNNTSAEDRREYLESLLR 1582
I G A ++ L S+++
Sbjct: 635 DRLVIQQGRAQVAAKAAANKDELLSMIQ 662
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 906 (324.0 bits), Expect = 6.3e-90, P = 6.3e-90
Identities = 214/563 (38%), Positives = 302/563 (53%)
Query: 1010 KYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYY 1069
K ++L K + S + ++ V ++ P+ +N + D E E
Sbjct: 47 KRFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDGDHRHRKTEQEEDEE 106
Query: 1070 LMAHSIKES----VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQ 1125
++A +IK + P ++ G++R+YQ+ GL WL SL +N++NGILADEMGLGKT+Q
Sbjct: 107 MVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQ 166
Query: 1126 VIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185
I++I Y+ KN P W +E W P I+ +V G R ++ ++
Sbjct: 167 TISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDV 226
Query: 1186 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHR 1245
I+ QKF+V TTYE ++ + +L K+ W YIIIDE HRIKN KL+ ++ S +R
Sbjct: 227 ILPQKFDVCCTTYEMMLKV--KTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENR 284
Query: 1246 LLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWF-NKPFESNGDNSPDXXXXXXXXX 1304
LL+TGTP IF SS+DF WF N N D
Sbjct: 285 LLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTD------------- 331
Query: 1305 XXIINRLHQVLRPFVLRRLKHKVENEL-PEKIER----LVRCEASAYQKLLMKRVEENLG 1359
++ RLH+VL+PF+LRR+K VE L P+K + L + + Y K+LMK ++ G
Sbjct: 332 --LVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDIDIING 389
Query: 1360 SIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLL 1419
+ K R + N +M LR NHPYL AE +L V GK+ +LD+LL
Sbjct: 390 AGKVEKARLM-NILMHLRKCVNHPYLFD-GAEPGPPFTTDQHL---VDNSGKMVVLDKLL 444
Query: 1420 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479
K K RVL FS +R+LD++ED+ ++ Y Y RLDG T DR I+ +N DS
Sbjct: 445 MKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKK 504
Query: 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539
FIF+L+ RAGG+G+NL AD VII+D+DWNPQ DLQA RAHRIGQK+ V V R T T
Sbjct: 505 FIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENT 564
Query: 1540 VEEQVRASAEHKLGVANQSITAG 1562
V+E++ AE KL + N I G
Sbjct: 565 VDERIIEKAEAKLRLDNIVIQQG 587
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 891 (318.7 bits), Expect = 7.5e-90, Sum P(2) = 7.5e-90
Identities = 205/512 (40%), Positives = 289/512 (56%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
SI+ E P + G +LR YQ+ G+ WLVSL+ N++ GILADEMGLGKT+Q I+ + YL
Sbjct: 180 SIEFQFRESPAYVNG-QLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYL 238
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNV 1193
+ GPF W EIN W P ++ + G EER L ++K++ F+V
Sbjct: 239 RYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDV 298
Query: 1194 LLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPX 1253
++ +YE ++ ++ L KI W YIIIDE HRIKN L+ L+ + S +RLL+TGTP
Sbjct: 299 VIASYEIIIR--EKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPL 356
Query: 1254 XXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQ 1313
IF+ ++DF WF+ ES ++ I+ +LH
Sbjct: 357 QNNLHELWALLNFLLPDIFSDAQDFDDWFSS--ESTEEDQDK-----------IVKQLHT 403
Query: 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS---- 1368
VL+PF+LRR+K VE L K E + S+ QK K++ E++L ++ S G
Sbjct: 404 VLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKT 463
Query: 1369 -VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 1427
+ N +M+LR CNHPYL AE +L V KL++LD+LL KLK
Sbjct: 464 RLLNIMMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNAAKLQVLDKLLKKLKEEGS 519
Query: 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487
RVL FS M+RLLD++EDY F+ Y Y R+DG T+ DR ID +N DS F+FLL+ R
Sbjct: 520 RVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTR 579
Query: 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547
AGG+G+NL +AD V+++D+DWNPQ DLQA RAHRIGQK+ V V R T +VEE++
Sbjct: 580 AGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILER 639
Query: 1548 AEHKLGVANQSITAGFFDNNTSAEDRREYLES 1579
A KL + +Q + N TS + + +S
Sbjct: 640 ATQKLRL-DQLVIQ---QNRTSLKKKENKADS 667
Score = 43 (20.2 bits), Expect = 7.5e-90, Sum P(2) = 7.5e-90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 553 SSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQL---ATGK 596
SSG + A S + +ENLK PP H + +++ L A GK
Sbjct: 56 SSGSIMTA--SEEYLENLKPFQVGLPP--HDPESNKKRYLLKDANGK 98
Score = 41 (19.5 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 224 FSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVK 260
+ +K A F++ + + EH SLSG + K
Sbjct: 90 YLLKDANGKKFDLEGTTKRFEHLLSLSGLFKHFIESK 126
Score = 37 (18.1 bits), Expect = 3.2e-89, Sum P(2) = 3.2e-89
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 989 YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPA 1048
Y RM + +++ N+ K+ + L LQE K + D + S++ E
Sbjct: 16 YTRMRKKHENNSCNEKDKDENLFKIILAIFLQEKK--------KYDCISSGSIMTASEEY 67
Query: 1049 VENED--ESDQAKHYLESNEKYYLM 1071
+EN + H ESN+K YL+
Sbjct: 68 LENLKPFQVGLPPHDPESNKKRYLL 92
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 904 (323.3 bits), Expect = 1.0e-89, P = 1.0e-89
Identities = 227/610 (37%), Positives = 328/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ Y
Sbjct: 91 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHR 150
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 151 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 203
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 204 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 263
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 264 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 321
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 322 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 380
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 381 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 427
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 428 EWYTKILMKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 483
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 484 -IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 542
Query: 1464 DR--GAL----------IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R G L I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 543 ERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 602
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 603 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 662
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 663 MAKEEMLQMI 672
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 903 (322.9 bits), Expect = 1.3e-89, P = 1.3e-89
Identities = 228/610 (37%), Positives = 327/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + DE Q++ Y
Sbjct: 67 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHR 126
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + I+ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 127 -RTEQEEDE--ELLSESRKTSNVC--IRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 179
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 180 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 239
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 240 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 297
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 298 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 356
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 357 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 403
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 404 EWYTKILMKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 459
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 460 -IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 518
Query: 1464 DR----------GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 519 EREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 578
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 579 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 638
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 639 LAKEEMLQMI 648
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 903 (322.9 bits), Expect = 1.3e-89, P = 1.3e-89
Identities = 228/610 (37%), Positives = 327/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + DE Q++ Y
Sbjct: 88 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHR 147
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + I+ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 148 -RTEQEEDE--ELLSESRKTSNVC--IRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 200
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 201 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 260
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 261 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 318
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 319 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 377
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 378 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 424
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 425 EWYTKILMKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 480
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 481 -IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 539
Query: 1464 DR----------GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 540 EREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 599
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 600 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 659
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 660 LAKEEMLQMI 669
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 879 (314.5 bits), Expect = 2.2e-89, Sum P(2) = 2.2e-89
Identities = 221/622 (35%), Positives = 331/622 (53%)
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE-N 1051
+ + + ++++LL +T+ Y + L K+++ E++ E + K + A + N
Sbjct: 95 LNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEPEKTGRGRKRKAASQYN 154
Query: 1052 EDESDQAKHYLESNEKYYLMAHSIKESVSEQPT--------C--LQGGKLREYQMSGLRW 1101
++ +A + S K +I ++E+ T C L GG+L+ YQ+ G++W
Sbjct: 155 NTKAKRAVAAMISRSKED--GETINSDLTEEETVIKLQNELCPLLTGGQLKSYQLKGVKW 212
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L+SL+ N LNGILAD+MGLGKT+Q I + +L D GP+ W +EI
Sbjct: 213 LISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLD-GPYLVIAPLSTLSNWFNEIAR 271
Query: 1162 WAPRIHKIVYCGPPEER---RRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218
+ P I+ I+Y G +R RR K V KF +++T+YE MN R L W Y+
Sbjct: 272 FTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRI-LRHYPWKYV 330
Query: 1219 IIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDF 1278
+IDEGHR+KN CKL +LKH + ++LLLTGTP IF S ++F
Sbjct: 331 VIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEF 390
Query: 1279 SQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERL 1338
WF+ F N ++++LH +LRPF+LRR+K VE LP K E +
Sbjct: 391 ESWFD--FSEKNKNEA-TKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEII 447
Query: 1339 VRCEASAYQK-----LLMKRVEENLG--SI-GNS-KGRSVHNSVMELRNICNHPYLSQLH 1389
+ + +QK L+ +E +LG +I G KG+ ++N V++LR CNHP L Q
Sbjct: 448 MYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGK-LNNLVIQLRKNCNHPDLLQ-- 504
Query: 1390 AEEVDTLIPKHYLPP---IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
++D + PP IV CGK +L+RLL +L A +H+VL FS T+LLD+M+ Y
Sbjct: 505 -GQIDG---SYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYF 560
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
+ K + R+DG +R I F+ + S IFLLS RAGG+G+NL AADT I++D+
Sbjct: 561 SEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDS 620
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 1566
DWNPQ+DLQA R HRIGQ + V V R T Q++E +V A KL + + I G F
Sbjct: 621 DWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQ 680
Query: 1567 NTSAEDRREYLESLLRECKKEE 1588
+ E +L K++E
Sbjct: 681 ERAKSSTPLEEEDILALLKEDE 702
Score = 51 (23.0 bits), Expect = 2.2e-89, Sum P(2) = 2.2e-89
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 974 QREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEM 1033
+ E + VE + + ++ S +++ + + E+ L KL ++A + S +
Sbjct: 36 EEENCEEKSVTVVEEEILLAKNGDSSLISEAMAQEEEQLLKLREDEEKANNAGSAVAPNL 95
Query: 1034 DETQTVSVVE 1043
+ETQ + E
Sbjct: 96 NETQFTKLDE 105
Score = 38 (18.4 bits), Expect = 5.1e-88, Sum P(2) = 5.1e-88
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 183 KRGDSSISHEPQNENPQQL 201
K GDSS+ E + +QL
Sbjct: 56 KNGDSSLISEAMAQEEEQL 74
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 900 (321.9 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 226/610 (37%), Positives = 327/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ Y
Sbjct: 91 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHR 150
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 151 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 203
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 204 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 263
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 264 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 321
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 322 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 380
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 381 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 427
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 428 EWYTKILMKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 483
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 484 -IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 542
Query: 1464 DR----------GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 543 EREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 602
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 603 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 662
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 663 MAKEEMLQMI 672
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 900 (321.9 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 226/610 (37%), Positives = 327/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ Y
Sbjct: 91 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHR 150
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 151 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 203
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 204 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 263
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 264 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 321
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 322 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 380
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 381 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 427
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 428 EWYTKILMKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 483
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 484 -IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 542
Query: 1464 DR----------GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 543 EREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 602
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 603 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 662
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 663 MAKEEMLQMI 672
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 898 (321.2 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 225/610 (36%), Positives = 327/610 (53%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ V Y
Sbjct: 68 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHR 127
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 128 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 180
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 181 GVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 240
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 241 ICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 298
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 299 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 357
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEA 1343
GD ++ RLH VL+PF+LRR+K VE LP K E L + +
Sbjct: 358 LGDQK-------------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR 404
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
Y K+LMK ++ L S G + N +M+LR CNHPYL AE +
Sbjct: 405 EWYTKILMKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH-- 460
Query: 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463
IV GK+ LD+LL ++K RVL FS MTRLLD++EDY ++ Y Y RLDG T
Sbjct: 461 -IVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHE 519
Query: 1464 DRGAL------------IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 1511
+R L I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQ
Sbjct: 520 ERENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 579
Query: 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSA 1570
VDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 580 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 639
Query: 1571 EDRREYLESL 1580
+ E L+ +
Sbjct: 640 LAKEEMLQMI 649
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 799 (286.3 bits), Expect = 9.2e-87, Sum P(4) = 9.2e-87
Identities = 195/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QP L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 471 ALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 530
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 531 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 590
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGT
Sbjct: 591 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 649
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 650 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 691
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 692 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 751
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 752 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRER 808
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 809 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 868
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 869 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 928
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 929 ERAKKKM 935
Score = 63 (27.2 bits), Expect = 9.2e-87, Sum P(4) = 9.2e-87
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 22 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 80
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 81 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 135
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 136 PKRRGQRQLKKQEKW-KREPSEDEQEQGTSAESEPEQKKVKARR 178
Score = 49 (22.3 bits), Expect = 5.8e-83, Sum P(3) = 5.8e-83
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ DSS + +E P++ R + N
Sbjct: 191 KKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKN 228
Score = 48 (22.0 bits), Expect = 9.2e-87, Sum P(4) = 9.2e-87
Identities = 39/176 (22%), Positives = 65/176 (36%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 177 RRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 236
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPA 796
+ D+ ++ T + + D S TI R G T ++ + P+
Sbjct: 237 FET----DSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPS 292
Query: 797 PKYTMSEKWIMDMQ---KRK--LLVEQNWILKQQKTKQRMSTCFNKLKESVSSSED 847
+ SEK ++Q K K + W ++ +Q++ KL E+ ED
Sbjct: 293 GDFD-SEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKG-LKKL-ENFKKKED 345
Score = 47 (21.6 bits), Expect = 4.3e-85, Sum P(4) = 4.3e-85
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ-E 170
++ E S + SS + Q+ S H S S+ + S+ SQS+ E
Sbjct: 7 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 66
Query: 171 RQKDGKKA 178
+ G K+
Sbjct: 67 SESAGSKS 74
Score = 47 (21.6 bits), Expect = 4.3e-85, Sum P(4) = 4.3e-85
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 12 SSLHSNASS--HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 69
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 70 AGSKSQPVLP 79
Score = 42 (19.8 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S S + S P + H + + + + E+E
Sbjct: 7 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 66
Query: 601 MQSQETAESQAFFTSASQQLESASTR 626
+S + +SQ A ++ S R
Sbjct: 67 SESAGS-KSQPVLPEAKEKPASKKER 91
Score = 41 (19.5 bits), Expect = 9.2e-87, Sum P(4) = 9.2e-87
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 174 VKARRPVPRRTVPKPRVKKQ 193
Score = 39 (18.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 56 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 106
Score = 38 (18.4 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 6 KSQEEDSSLHSN---ASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 63 SESESESAGSKSQPVL 78
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 870 (311.3 bits), Expect = 2.6e-85, Sum P(3) = 2.6e-85
Identities = 195/508 (38%), Positives = 289/508 (56%)
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
+ +QP+ ++GG++R++Q++G+ W+ L++ NGILADEMGLGKTVQ + + YL+ +
Sbjct: 378 LEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLK 437
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ------KFN 1192
GPF W+ + W P ++ I Y G E R + + + KFN
Sbjct: 438 QHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFN 497
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
+LLTTYEY++ D+ +L+ I+W Y+ IDE HR+KN+ L L +++++RLL+TGTP
Sbjct: 498 ILLTTYEYILK--DKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTP 555
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F ++ + F++P N + D I L
Sbjct: 556 LQNNLKELASLVNFLMPGKFYIRDELN--FDQP---NAEQERD------------IRDLQ 598
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI-GNSKGR--- 1367
+ L+PF+LRRLK VE LP K ER++R E S Q K + +N ++ G++ GR
Sbjct: 599 ERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQL 658
Query: 1368 SVHNSVMELRNICNHPYLSQLHAEEV---DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA 1424
S+ N V+EL+ + NHPYL AE+ + + L I+ GK+ +LD+LL +LK
Sbjct: 659 SLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKH 718
Query: 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484
HRVL FS M R+L+++ +Y++ + Y Y RLDG R ID FN DSP F+FLL
Sbjct: 719 DGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLL 778
Query: 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544
S RAGG+G+NL ADTVIIFD+DWNPQ DLQA ARAHRIGQK V V RF + TVEE +
Sbjct: 779 STRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDI 838
Query: 1545 RASAEHKLGVANQSITAGFFDNNTSAED 1572
A K+ + I+ G + + ++++
Sbjct: 839 LERARRKMILEYAIISLGVTEKSKNSKN 866
Score = 66 (28.3 bits), Expect = 2.6e-85, Sum P(3) = 2.6e-85
Identities = 32/129 (24%), Positives = 57/129 (44%)
Query: 598 EAEMQSQETAESQAFFTSASQQLESASTRGTLAITNP-VNDVENGHLFIGRANVASVTGI 656
E SQ++ S AF S + ST + A++ P ++D +N + +
Sbjct: 49 ENSFASQQSLSSSAFDDSEIVTSTANSTVVSSALSTPKIDDAQNSD-DVRVDGTRRSSRA 107
Query: 657 NKPMNSEINSWTGIGSQNEVP----RRPLPAPTVQHELVKDNDPTQFKS--FGHSGASGN 710
+P+ + S+T I ++E+P R+ PAP + + D++ K F + ASG
Sbjct: 108 KRPVYRDF-SYTEI-DEHEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGT 165
Query: 711 QHANSHLSS 719
+ S SS
Sbjct: 166 EIRTSLRSS 174
Score = 45 (20.9 bits), Expect = 3.3e-83, Sum P(3) = 3.3e-83
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESV 1079
++ KS+AS E+ D+ S+ + S + K + +++Y +E V
Sbjct: 138 KQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSSKGKSVNYNEQEFYDDFEDEEEEV 197
Query: 1080 SEQ 1082
EQ
Sbjct: 198 EEQ 200
Score = 44 (20.5 bits), Expect = 3.3e-83, Sum P(3) = 3.3e-83
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 741 PVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDS 793
P L ++ DP+F + + ++P N + N + Q S DS
Sbjct: 14 PTSVQESTLNGSAVTDPQFGNTTNSLPSMNGLLNHENSFASQQSLSSSAFDDS 66
Score = 43 (20.2 bits), Expect = 2.6e-85, Sum P(3) = 2.6e-85
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
++ + + VN +EF+ E E ++++ E + I+ V + R DA+ D
Sbjct: 171 LRSSKGKSVNYNEQEFYDDFEDEEEEVEEQVEEEYEPI--IDFVLNH-RKRADAQDDDP- 226
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
K + +YL K QE SH N ++ T+S V Y+ V+N
Sbjct: 227 ---KSSYQYL----IKWQEV----SHLHNTWEDYSTLSSVRGYKK-VDN 263
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 490 (177.5 bits), Expect = 1.5e-84, Sum P(3) = 1.5e-84
Identities = 124/415 (29%), Positives = 210/415 (50%)
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
+D EG + + + ++ LK+T+K ++ K + + +N E ++ E
Sbjct: 1061 SDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFDRDVNKIKNSATEGGGETIPE 1120
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLV 1103
AV ++ D ++ N S +++ +QPT L L+ YQ+ G+ W+V
Sbjct: 1121 SL--AVSDKMMVDGLP-MIDMNSSIP-PGFSTADTL-KQPTILNAD-LKPYQLKGMTWIV 1174
Query: 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWA 1163
+LY+ +NGILADEMGLGKT+Q IA++ +L E KN GPF W++E +
Sbjct: 1175 NLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKSTLHNWKNEFAKFV 1234
Query: 1164 PRIHKIVYCGPPEERRRLFK----EKIVHQK--FNVLLTTYEYLMNKHDRPKLSKIQWHY 1217
P I Y G ++R + K +K+ H+ F+VL+T+Y ++ D +++W Y
Sbjct: 1235 PAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVR--DEKYFHRLRWQY 1292
Query: 1218 IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 1277
+++DE H IK+++ L + +RLLLTGTP F+S ++
Sbjct: 1293 MVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDE 1352
Query: 1278 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337
F++WF+K E++ + +NRLH +L+PF+LRR+K VENE+P K E
Sbjct: 1353 FAEWFSKDIENHAMSQGGLNEHQ-------LNRLHMILKPFMLRRIKRDVENEMPSKTEV 1405
Query: 1338 LVRCEASAYQKLLMKRVEENL-------GSIGNSKG--RSVHNSVMELRNICNHP 1383
V C + QK L + + N+ G+ + +G +++ N VM+ R +CNHP
Sbjct: 1406 EVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGSMKALMNFVMQFRKVCNHP 1460
Score = 404 (147.3 bits), Expect = 1.5e-84, Sum P(3) = 1.5e-84
Identities = 83/182 (45%), Positives = 119/182 (65%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL++LD+LL LK HRVL +S T++++++ED++ F++Y+YLRLDG + DR ++
Sbjct: 1767 GKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMV 1826
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D F Q D F FLLS RA G+G+NL +ADTVI +D+DWNP VD QAQ RAHR+GQ R V
Sbjct: 1827 DDF-QSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPV 1885
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR---REYLESLLRECKK 1586
V R T T+EE++ A+ K + + I G F++N D+ E + LL + +
Sbjct: 1886 TVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEELDQVGENEAISFLLDDDEL 1945
Query: 1587 EE 1588
EE
Sbjct: 1946 EE 1947
Score = 114 (45.2 bits), Expect = 1.5e-84, Sum P(3) = 1.5e-84
Identities = 86/387 (22%), Positives = 156/387 (40%)
Query: 89 STAQCAGSSSQVAGVVKDSKAGLAENEMSKIE-PFTSSRPPV---APSGAGHDYYQASGT 144
ST + S+S + + SK+ + + S P S + + G+ ++S +
Sbjct: 186 STTTSSSSNSTSSSSSRSSKSHSSSSSSSSSSYPIKSIFGNIGGGSSKGSSSSSSRSSKS 245
Query: 145 HRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
SS S S D+RS +R + + S++ R DS S + +++ + S
Sbjct: 246 SGSSSSRSDRDKSDRDSRSDRESRSDRDRSDRDRSSRSDR-DSRSSRDSRSDRDRTSSSS 304
Query: 205 NSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQ 264
N+ N N S + +N N S + ++ + S ++ G+
Sbjct: 305 NNNNNNNNNNNNNNSGNNNNSNNNSNNNNNNSNNSNNINNNSNNSRSDRDSRSDRERSGR 364
Query: 265 NVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAG 324
+ E DS SN R+S+S S+ N+ ++ N L+S + + NR
Sbjct: 365 SDRESRGDSK--SN---RSSSSSS------SSLNNNNNNNNNNNNNPLSSSSS-SSNRQ- 411
Query: 325 FPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSP 384
P S P P N + T L +++ G PI SS +L SS+LS
Sbjct: 412 -PSTTS--PIMPSNTLFNIKPIGTTSPHLSSSSN---QGLPPISLSSSSKHKL-SSSLSS 464
Query: 385 VESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASR 444
S STN+G +SA+ SS VL S ++ + + ++P A L ++S
Sbjct: 465 SSSLSSSTNQG-ASSAISSSISVLSSPKQSPSMKSMSSS-----NPALPTLAPLTQLSSS 518
Query: 445 DTGKSSVSQTPVFSGMPFKE-QQLKQL 470
+ + ++ + + K+ +QL +L
Sbjct: 519 SSNQKNLPNLVLKKAISKKDREQLMEL 545
Score = 105 (42.0 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 82/373 (21%), Positives = 136/373 (36%)
Query: 74 SSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
SS TS S S + + SSS + +K S G SK +SSR + SG
Sbjct: 190 SSSSNSTSSSSSRSSKSHSSSSSSSSSSYPIK-SIFGNIGGGSSKGSSSSSSRSSKS-SG 247
Query: 134 AGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEP 193
+ + R S+S D ES S D RS +S +D + + R D + S
Sbjct: 248 SSSSRSDRDKSDRDSRS-DRESRSDRD-RSDRDRSSRSDRDSRSSRDSRSDRDRTSSSSN 305
Query: 194 QNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNM 253
N N ++ N+ N N + + +N N S SG
Sbjct: 306 NNNNNNNNNNNNNSGNNNNSNNNSNNNNNNSNNSNNINNNSNNSRSDRDSRSDRERSGRS 365
Query: 254 SSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLA 313
R + + S N +N+ +N+ P S+S +Q S+ + ++
Sbjct: 366 DRESRGDSKSNRSSSSSSSSLNNNNNNNNNNNNN-PLSSSSSSSNRQP----STTSPIMP 420
Query: 314 SRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPS-SY 372
S +N G + P + P P SL +++ K+ ++ S S
Sbjct: 421 SNTLFNIKPIG-----TTSPHLSSSSNQGLP---PI--SLSSSSKHKLSSSLSSSSSLSS 470
Query: 373 PTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSV 432
T + SSA+S S L S + +M SS L LS ++ Q ++
Sbjct: 471 STNQGASSAISSSISVLSSPKQSPSMKSMSSSNPALPTLAPLTQLSSSS-----SNQKNL 525
Query: 433 PGTAMLRTMASRD 445
P + + ++ +D
Sbjct: 526 PNLVLKKAISKKD 538
Score = 73 (30.8 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 39/167 (23%), Positives = 77/167 (46%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEG 988
E++ ++ + K + R + + K + + ++ ++ RE R ++E+ N K + E
Sbjct: 925 ELKIKNQKPPKATKDNQIRAKKLVKEMGAYWRKFDKDEREAKRRAEKEEANQRK-REEE- 982
Query: 989 YLRMVQDAKSD--RVNKLLKETEKYLQKLGSKLQEAKS-------MASHFE-NEMDETQT 1038
VQ+AK ++N L+ +TE Y + KL + S + S ++M Q
Sbjct: 983 ----VQEAKRQQRKLNFLISQTELYSHFMSKKLDDPSSGDATPATIGSLMNGSQMPTEQN 1038
Query: 1039 VSVVEKY-----EPAVENEDES--DQAKHYLESNEKYYLMAHSIKES 1078
+ EK E + E E+ES D+ K E E+ L + ++K++
Sbjct: 1039 KKIKEKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKKT 1085
Score = 62 (26.9 bits), Expect = 1.7e-79, Sum P(4) = 1.7e-79
Identities = 43/239 (17%), Positives = 97/239 (40%)
Query: 195 NENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMS 254
N + ++ SR+ +P +G+ + +P + + + + SG + SS S + S
Sbjct: 40 NNSYRRSRSRSRSPSPTRGRSPVMYSPN----RDSSDDDSSSSRSGLYLSSSSSRSRSRS 95
Query: 255 SI--LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVL 312
+ L G + +++ N +N+ +N+ + +G NS +S+N
Sbjct: 96 PLPPLNNINNGNQQSNNFINNKNNNNNFNNINNNYN------NNNGINSSNSNNSSNSSN 149
Query: 313 ASRGTWNQNRAGFPF-ERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSS 371
S+ + N P+ + + P + T +S +N+ + S
Sbjct: 150 KSKNSNNNIPNILPYISLNGSGSSSSSKQFSLPPLKSTTTSSSSNS---TSSSSSRSSKS 206
Query: 372 YPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQN 430
+ + SS+ P++S + G + SS + + GSS++ SD +++ + R +
Sbjct: 207 HSSSSSSSSSSYPIKSIFGNIGGGSSKGSSSSSSRSSKSSGSSSSRSDRDKSDRDSRSD 265
Score = 59 (25.8 bits), Expect = 3.6e-79, Sum P(4) = 3.6e-79
Identities = 35/180 (19%), Positives = 70/180 (38%)
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
SR P G Y + S S L + S+ S+S+ + ++
Sbjct: 50 SRSPSPTRGRSPVMYSPNRDSSDDDSSSSRSGLYLSSSSSRSRSRSPLPPLNNINNGNQQ 109
Query: 185 GDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQME 244
++ I+++ N N ++ N+ N G +N ++ + +++ N +P+ +
Sbjct: 110 SNNFINNKNNNNN---FNNINNNYNNNNG-INSSNSNNSSNSSNKSKNSNNNIPN---IL 162
Query: 245 HFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNS 304
+ SL+G+ SS + + PL S S+S S+S S+S +S
Sbjct: 163 PYISLNGSGSS-----SSSKQFSLPPLKSTTTSSSSNSTSSSSSRSSKSHSSSSSSSSSS 217
Score = 59 (25.8 bits), Expect = 1.4e-38, Sum P(5) = 1.4e-38
Identities = 32/149 (21%), Positives = 59/149 (39%)
Query: 556 GFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT-GKLEAEMQSQETAESQAFF- 613
G L S +N K+ +K+ + S EE + GK E E + +E +S+A
Sbjct: 1025 GSLMNGSQMPTEQNKKIKEKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKK 1084
Query: 614 TSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQ 673
T + +L+ T+ VN ++N G + ++ M ++ I
Sbjct: 1085 TQKAIELQLLKTK---TFDRDVNKIKNSATEGGGETIPESLAVSDKMM--VDGLPMIDMN 1139
Query: 674 NEVPRRPLPAPTVQHELVKDND--PTQFK 700
+ +P A T++ + + D P Q K
Sbjct: 1140 SSIPPGFSTADTLKQPTILNADLKPYQLK 1168
Score = 56 (24.8 bits), Expect = 1.7e-79, Sum P(4) = 1.7e-79
Identities = 37/167 (22%), Positives = 68/167 (40%)
Query: 693 DNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHT 752
+N+ + G++ S N N++ +S + + + + SDR S ++ SG
Sbjct: 310 NNNNNNNNNSGNNNNSNNNSNNNNNNSNNSNNINNNSNNSRSDRDSRSD-RERSGRSDRE 368
Query: 753 SQDDPKF--SDGSRTIPVDNSVRNGIS-----LTTEQDEEDKSLHTDSPPAPKYTMSEKW 805
S+ D K S S + ++N+ N + L++ ++ T SP P T+
Sbjct: 369 SRGDSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTSPIMPSNTLFNIK 428
Query: 806 IMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKT 852
+ L N L S+ +KL S+SSS +S+ T
Sbjct: 429 PIGTTSPHLSSSSNQGLPPISLS---SSSKHKLSSSLSSSSSLSSST 472
Score = 55 (24.4 bits), Expect = 9.1e-39, Sum P(3) = 9.1e-39
Identities = 23/103 (22%), Positives = 41/103 (39%)
Query: 755 DDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKL 814
DDP S G T S+ NG + TEQ+++ K + E+ D K +
Sbjct: 1012 DDP--SSGDATPATIGSLMNGSQMPTEQNKKIKEKNDQDDNESSSEEEEESSDDEGKTEQ 1069
Query: 815 LVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIE 857
++ LK + K+ +L ++ + D++ S E
Sbjct: 1070 EKKEEEELKSEALKKTQKAIELQLLKTKTFDRDVNKIKNSATE 1112
Score = 55 (24.4 bits), Expect = 3.7e-38, Sum P(5) = 3.7e-38
Identities = 26/119 (21%), Positives = 46/119 (38%)
Query: 509 SRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVE 568
S+ EL + +DPSS A G L N + + + SS E E
Sbjct: 998 SQTELYSHFMSKKLDDPSSGDATPATIGSLMNGSQMPTEQNKKIKEKNDQDDNESSSEEE 1057
Query: 569 NLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
+ D G EE K A K + ++ Q +++ F ++ +++++T G
Sbjct: 1058 E-ESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQ-LLKTKTFDRDVNK-IKNSATEG 1113
Score = 52 (23.4 bits), Expect = 4.9e-78, Sum P(3) = 4.9e-78
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 142 SGTHRSSQSFDHESPS-SLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
S + RS + S S S S++S S R KD K D S + +E ++
Sbjct: 750 SSSSRSKDRYGSSSSSKSSKYNSSSSSSSSRSKDNKYIRPSIFSSDDDFSKDEDDEEFER 809
Query: 201 L 201
L
Sbjct: 810 L 810
Score = 51 (23.0 bits), Expect = 6.3e-78, Sum P(3) = 6.3e-78
Identities = 39/169 (23%), Positives = 64/169 (37%)
Query: 633 NPVNDVENGHLFIGRANVA-SVTGINKPMNSEIN--------SWTGIGSQNEVPRRPLPA 683
N +N+ N + I +N S NK NS N S G GS + + LP
Sbjct: 124 NNINNNYNNNNGINSSNSNNSSNSSNKSKNSNNNIPNILPYISLNGSGSSSSSKQFSLP- 182
Query: 684 PTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVK 743
P ++ T S S S + ++S SS+ I+ + + G S S +
Sbjct: 183 PLKSTTTSSSSNSTSSSS-SRSSKSHSSSSSSSSSSYPIKSIFGNIGGGSSKGSSSSSSR 241
Query: 744 DASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTD 792
+ +S+ D SD R D R+ ++ + D+S +D
Sbjct: 242 SSKSSGSSSSRSDRDKSD--RDSRSDRESRSD----RDRSDRDRSSRSD 284
Score = 49 (22.3 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 82/434 (18%), Positives = 151/434 (34%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
S RS +S D ES D++S S S + ++ +S + N Q
Sbjct: 357 SDRERSGRS-DRESRG--DSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQP- 412
Query: 202 DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
S S + P N + G S + SN + P LS ++SS +
Sbjct: 413 -STTSPIMPSNTLFN-IKPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSS 470
Query: 262 E-GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQ 320
Q + S +V +S ++ + K + LSS++ +
Sbjct: 471 STNQGASSAISSSISVLSSPKQSPSMKSMSSSNPALPTLAPLTQLSSSSSNQKNLPNLVL 530
Query: 321 NRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPS--SYPTGELG 378
+A +R Q+ ++ + T +L ++ K A PS S P L
Sbjct: 531 KKAISKKDREQLMELLNEHESDSDVDFSTTPTLSSH-ISKYSPAQSPLPSIKSIPPMPLS 589
Query: 379 SSALSPVE--SQLFSTNRGDETSAMLSSGKVLEHDGSSNTLS--DANRAVQVGRQNSVPG 434
++ P+ +Q ST+ + S ++ ++ ++N L D N N +
Sbjct: 590 GNSFEPLSIGNQRNSTDNLYDNSNNKNNNN--NYNNNNNMLKNLDFNSNDHSKLDNILLS 647
Query: 435 TAMLRTMASRDTGKSSVSQTPV---F-SGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLH 490
+ R+ SS+S P F S E+ K++ A +
Sbjct: 648 EKSIER--HRNPLSSSISSAPKPLDFDSDEDITEEYYKKMLANHARSKKSKKETDKIFRE 705
Query: 491 LEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPG 550
LE++ ++F + D + +++ + + ND + P ++R DR
Sbjct: 706 LELSDDDVFDEKN---DRKQLKMMKRLMDREDNDRRVKKKMVDPKYNSSSSRSKDRYGSS 762
Query: 551 GSSSGGFLEADSSS 564
SS + SSS
Sbjct: 763 SSSKSSKYNSSSSS 776
Score = 48 (22.0 bits), Expect = 2.4e-78, Sum P(4) = 2.4e-78
Identities = 61/301 (20%), Positives = 117/301 (38%)
Query: 521 SSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEV-ENLKMMDKSGPP 579
SS+ SS P + + +G +G GGSS G + SSK + D+
Sbjct: 211 SSSSSSSYP-IKSIFGNIG----------GGSSKGSSSSSSRSSKSSGSSSSRSDRDKSD 259
Query: 580 ADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVE 639
D E R + + + S+ +S++ S S + ++S+ N N+
Sbjct: 260 RDSRSDRESRSD--RDRSDRDRSSRSDRDSRSSRDSRSDRDRTSSSSNNNNNNNNNNNNN 317
Query: 640 NGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQF 699
N N ++ N ++ IN+ + S+++ R + + + D
Sbjct: 318 NSGNNNNSNNNSNNNNNNSNNSNNINNNSN-NSRSDRDSRSDRERSGRSDRESRGDSKSN 376
Query: 700 KSFGHSGAS-------GNQHANSHLSSFSIRDQWKPVSGT----DSDRYSLIPVKDASGM 748
+S S +S N + N+ LSS S +P + + + +++ P+ S
Sbjct: 377 RSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTSPIMPSNTLFNIKPIGTTSPH 436
Query: 749 LRHTS-QDDPKFS-DGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPP---APKYTMSE 803
L +S Q P S S + +S+ + SL++ ++ S + S +PK + S
Sbjct: 437 LSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQGASSAISSSISVLSSPKQSPSM 496
Query: 804 K 804
K
Sbjct: 497 K 497
Score = 48 (22.0 bits), Expect = 1.4e-38, Sum P(5) = 1.4e-38
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 723 RDQWKPVSGTDSDR 736
R+ W P++ TDSD+
Sbjct: 1514 REAWNPLNSTDSDQ 1527
Score = 44 (20.5 bits), Expect = 1.4e-38, Sum P(5) = 1.4e-38
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 819 NWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVI 856
++ L Q T+ + FN L +S S + +S KS++
Sbjct: 1578 DFYLLNQATENEVYPVFNHLLDSDSFDQPLSNNMKSML 1615
Score = 37 (18.1 bits), Expect = 2.5e-36, Sum P(5) = 2.5e-36
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 448 KSSVSQTPVFSGMPFKEQ-QLKQL 470
+S++S T + G F EQ +K L
Sbjct: 1423 RSNISITELLGGASFSEQGSMKAL 1446
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 859 (307.4 bits), Expect = 4.4e-81, Sum P(3) = 4.4e-81
Identities = 202/517 (39%), Positives = 287/517 (55%)
Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
QP+ + G LR+YQM GL WLV + N N ILADEMGLGKT+Q I+ + YL ++ +G
Sbjct: 746 QPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQDIKG 805
Query: 1142 PFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR--RLFK----EKIVHQKFNVLL 1195
PF W+ E WAP ++ IVY G + R RL++ ++ +K N +
Sbjct: 806 PFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFNV 865
Query: 1196 TTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXX 1255
Y D+ L I+W ++ +DE HR+KN+ L+ LK Y +++RLL+TGTP
Sbjct: 866 LLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQN 925
Query: 1256 XXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVL 1315
F S +DF ++ E++ I +LH VL
Sbjct: 926 SLKELWNLLNFLMPNKFTSLKDFQDQYSDLKENDQ-----------------IAQLHSVL 968
Query: 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGR--SVHNS 1372
+P +LRR+K VE LP K ER++R + S QK K + +N + KG ++ N
Sbjct: 969 KPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGEKTTLLNI 1028
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFF 1432
+ EL+ CNHPYL Q +E + L K L ++R GKL +LD+LL +LK T HRVL F
Sbjct: 1029 MTELKKTCNHPYLYQNARDECE-LGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVLIF 1087
Query: 1433 STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
S M R+LD++ DYL + +++ RLDG S R +D+FN DSP F FLLS +AGG+G
Sbjct: 1088 SQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLG 1147
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+NL ADTVIIFD+DWNPQ DLQA+ARAHRIGQK V + R + +VEE + A+ K+
Sbjct: 1148 INLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKM 1207
Query: 1553 GVAN-------QSITAGFFDNNTSAEDRREYLESLLR 1582
+ + +S TA N S +E LE++L+
Sbjct: 1208 VLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILK 1244
Score = 56 (24.8 bits), Expect = 4.4e-81, Sum P(3) = 4.4e-81
Identities = 36/195 (18%), Positives = 67/195 (34%)
Query: 769 DNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQ---Q 825
+N ++ IS + ++S + + + S++ + Q+ K+L +Q + Q
Sbjct: 207 NNGLKKDISNFKGNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQ 266
Query: 826 KTKQRMSTCFNKLKESVSSSEDISAKTKSVIEXXXXXXXXXXXXXXNDFLNDFFKPITTD 885
++ ST K+ S ED+ + D+ +D TD
Sbjct: 267 PVNKKKSTMVKKVDSDFESEEDVEEEQSGKDNDSDYEPSESEEQSEEDYESD------TD 320
Query: 886 MDRLKSYKKHRHGRRIKQLXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKR 945
D + + KK G R KQ SE E+ + E K K+
Sbjct: 321 DDDVYTKKKRGGGGR-KQTASTTTTTTRSGRQAKRITYSESDSE-ESESDSDYEPNKKKK 378
Query: 946 ERWRGVNKYVKEFHK 960
++ G + F K
Sbjct: 379 KQTNGRKRKGNNFQK 393
Score = 55 (24.4 bits), Expect = 3.7e-80, Sum P(4) = 3.7e-80
Identities = 16/78 (20%), Positives = 35/78 (44%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQ-Q 200
+ + ++ F+ P++ + N+ + +G K +G+ S S E +E+ +
Sbjct: 176 NNNNNNNNIFNQTIPNNNSNNNNNNNNINNNNNGLKKDISNFKGNESSSSESSSESSSSE 235
Query: 201 LDSRNSVVNPRKGKMNKV 218
+S + P K + NKV
Sbjct: 236 EESESQEDTPNKQR-NKV 252
Score = 52 (23.4 bits), Expect = 7.6e-80, Sum P(4) = 7.6e-80
Identities = 25/108 (23%), Positives = 39/108 (36%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
+G D G SS ES SS + + SQ K K T++ +S
Sbjct: 208 NGLKKDISNFKGNESSSSESSSESSSSEE--ESESQEDTPNKQRNKVLTQQLASESEEEL 265
Query: 192 EPQNENPQQL--------DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQ 231
+P N+ + +S V + GK N D S + +E+
Sbjct: 266 QPVNKKKSTMVKKVDSDFESEEDVEEEQSGKDNDSDYEPSESEEQSEE 313
Score = 52 (23.4 bits), Expect = 7.6e-80, Sum P(4) = 7.6e-80
Identities = 25/129 (19%), Positives = 46/129 (35%)
Query: 63 NQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKA---GLAENEMSKI 119
N NGL + +S +SS+++ S + + +K LA ++
Sbjct: 206 NNNGLKKDISNFKGNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEEL 265
Query: 120 EPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHES---PSSLDTRSANSQSQERQKDGK 176
+P + + D+ D++S PS + +S + E D
Sbjct: 266 QPVNKKKSTMVKK-VDSDFESEEDVEEEQSGKDNDSDYEPSESEEQS--EEDYESDTDDD 322
Query: 177 KASTKRKRG 185
TK+KRG
Sbjct: 323 DVYTKKKRG 331
Score = 50 (22.7 bits), Expect = 1.2e-79, Sum P(4) = 1.2e-79
Identities = 45/224 (20%), Positives = 84/224 (37%)
Query: 390 FSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKS 449
FST G ++ML SG + S+N ++ N + N+ M+ T+ T
Sbjct: 51 FSTTPGMGINSMLGSG--FGNSNSNNNNNNNNNNNNINNNNN--NNNMVNTI----TSPL 102
Query: 450 SVSQTPVFSGMPFKEQQLKQLRA-QCLVFLAFRNGLVPKKLH--LEIALGNI--FPREGG 504
P S F + L+ L++ Q L L L ++LH +I NI F
Sbjct: 103 FNPLPPTQSNSMFSQPTLQPLQSFQPLQTLQTLQPL-QQQLHQTTQIPNNNINNFNNNNS 161
Query: 505 NVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSS----GGFLEA 560
N++ + ++N+ ++ T P N + I + F
Sbjct: 162 NINYNNNSNSGNNN-NNNNNNNNIFNQTIPNNNSNNNNNNNNINNNNNGLKKDISNFKGN 220
Query: 561 DSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQ 604
+SSS E + + + ++R ++ T +L +E + +
Sbjct: 221 ESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEE 264
Score = 45 (20.9 bits), Expect = 4.1e-79, Sum P(4) = 4.1e-79
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 144 THRSSQSFDHESPSSLDTRSANSQSQ-ERQKDGKKASTKRKRGDSSISHE 192
T RS + + S D+ + S S E K KK + RKR ++ E
Sbjct: 345 TTRSGRQAKRITYSESDSEESESDSDYEPNKKKKKQTNGRKRKGNNFQKE 394
Score = 42 (19.8 bits), Expect = 1.3e-79, Sum P(3) = 1.3e-79
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKAST 180
P T +R A + + + G + F S S D S N + ++ K K+ +
Sbjct: 399 PATRARRGKAAIDSEEESNGSDGDQFVNNVFSSSSSSDEDY-SDNDKKNKKSKRTKRKNK 457
Query: 181 KRKRGDSSISH 191
+S+I+H
Sbjct: 458 TESDEESTITH 468
Score = 42 (19.8 bits), Expect = 1.3e-79, Sum P(3) = 1.3e-79
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 140 QASGTHRSSQSFDHES---PSSLDTRSANSQSQERQKDGKKAS--TKRKRGDSSISHEPQ 194
Q +G R +F E+ P++ R + E + +G SS S E
Sbjct: 380 QTNGRKRKGNNFQKENWTIPATRARRGKAAIDSEEESNGSDGDQFVNNVFSSSSSSDEDY 439
Query: 195 NENPQQLDSRNSVVNPRKGK 214
++N ++ ++ S RK K
Sbjct: 440 SDNDKK--NKKSKRTKRKNK 457
Score = 41 (19.5 bits), Expect = 4.4e-81, Sum P(3) = 4.4e-81
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 1565 DNNTSAEDRREYLESLLRECKK 1586
++ + ED + Y ++LLR+C++
Sbjct: 1767 NHESDEEDDKYYDKNLLRKCQQ 1788
Score = 38 (18.4 bits), Expect = 3.7e-80, Sum P(4) = 3.7e-80
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 705 SGASGNQHANSHLSSFSIRDQ 725
+G+ G+Q N+ SS S D+
Sbjct: 417 NGSDGDQFVNNVFSSSSSSDE 437
Score = 38 (18.4 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 12/74 (16%), Positives = 31/74 (41%)
Query: 539 GNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKS-GPPADHSIH-AEERKQLATGK 596
GN + SSS E+ + + K++ + ++ + ++K K
Sbjct: 219 GNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVKK 278
Query: 597 LEAEMQSQETAESQ 610
++++ +S+E E +
Sbjct: 279 VDSDFESEEDVEEE 292
Score = 37 (18.1 bits), Expect = 2.8e-78, Sum P(4) = 2.8e-78
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+S T + S Q ++ ++ ++ DS +EP + +Q + R
Sbjct: 339 ASTTTTTTRSGRQAKRITYSESDSEESESDSD--YEPNKKKKKQTNGR 384
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 821 (294.1 bits), Expect = 8.9e-81, P = 8.9e-81
Identities = 206/524 (39%), Positives = 288/524 (54%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 36 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 92
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 93 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 151
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 152 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 209
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 210 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 252
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 253 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 312
Query: 1372 SVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL E++ T +IP + L +VR GKL ++D+LLPKLK
Sbjct: 313 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 372
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 373 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 432
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
L RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E +
Sbjct: 433 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 492
Query: 1544 VRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
+ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 493 MFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 535
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 843 (301.8 bits), Expect = 1.3e-80, Sum P(2) = 1.3e-80
Identities = 199/554 (35%), Positives = 293/554 (52%)
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRW 1101
++ ++ E+ + +Y S KY + +QP+ + GG+LR++Q++G+ W
Sbjct: 334 IQAFQEREESALSPSRGTNYGNSRPKY--------RKLEQQPSYITGGELRDFQLTGVNW 385
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
+ L++ NGILADEMGLGKTVQ +A + YL + GPF W+ +
Sbjct: 386 MAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLAL 445
Query: 1162 WAPRIHKIVYCGPPEERR-----RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWH 1216
WA ++ I Y G R+ + + KFN+LLTTYEY++ DR LS I+W
Sbjct: 446 WASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLK--DRSVLSNIKWQ 503
Query: 1217 YIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
Y+ IDE HR+KN+ L L +++S+RLL+TGTP F E
Sbjct: 504 YMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIRE 563
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
+ + +PD I L + L+P++LRRLK VE LP K E
Sbjct: 564 EINL-----------EAPDEEQEAY------IRSLQEHLQPYILRRLKKDVEKSLPSKSE 606
Query: 1337 RLVRCEASA-----YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL----SQ 1387
R++R E S Y+ +L + SI + S+ N V+EL+ NHPYL +
Sbjct: 607 RILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEE 666
Query: 1388 LHAEEVDTLIPK-HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+++++ + L ++ GK+ +LD+LL +L+ HRVL FS M R+LD++ DYL
Sbjct: 667 SWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYL 726
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
+ + Y + RLDG R ID FN +SP F+FLLS RAGG+G+NL ADTVIIFD+
Sbjct: 727 SLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDS 786
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 1566
DWNPQ DLQA ARAHRIGQK V+V R + T+EE V A K+ + I+ G D
Sbjct: 787 DWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDK 846
Query: 1567 NTSAEDRREYLESL 1580
++++ + E L
Sbjct: 847 QKNSKNDKFSAEEL 860
Score = 50 (22.7 bits), Expect = 1.3e-80, Sum P(2) = 1.3e-80
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 143 GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKK-ASTKRKRGDSSISHEPQNENPQQL 201
GT S H + LD + + S+E + D T +KR S+ ++ +
Sbjct: 91 GTRNGSSFSRHRTIRDLDDEAESVTSEESESDDSSYGGTPKKRSRQKKSNT-YVQDEIRF 149
Query: 202 DSRNS 206
SRNS
Sbjct: 150 SSRNS 154
Score = 41 (19.5 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 732 TDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTI-PVDNSVRNGISLTTEQDEEDKSLH 790
TD D+ + P K G +++ FS RTI +D+ S+T+E+ E D S +
Sbjct: 77 TD-DQEDVFPSKHRKG-----TRNGSSFSR-HRTIRDLDDEAE---SVTSEESESDDSSY 126
Query: 791 TDSPPA-PKYTMSEKWIMD 808
+P + S ++ D
Sbjct: 127 GGTPKKRSRQKKSNTYVQD 145
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 459 (166.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 131/434 (30%), Positives = 213/434 (49%)
Query: 952 NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY 1011
+K++ ++++ ++K ++++R+K LK+ + + ++ K +E E Y
Sbjct: 79 SKFLLTKMEQQQLEEQKKKEKLERKK-ETLKVTKGKNSIGASEENPVVTRKKRGREDESY 137
Query: 1012 -LQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDES----DQAKHYLESNE 1066
+ ++ SK +E S+A + E ++ ++ S E +N+D + D+ + N
Sbjct: 138 NIAEVMSK-EEILSVAKKNKKENEQKESSSSNLCVEDLQKNKDSNSIIKDRLSQTVRQNT 196
Query: 1067 KYYL--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKT 1123
K++ + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMGLGKT
Sbjct: 197 KFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKT 256
Query: 1124 VQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFK 1183
VQ IA I LM + GPF W +E + P I ++Y G +ERR+L K
Sbjct: 257 VQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVK 315
Query: 1184 E----KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239
K Q V++T++E M DR L W Y+I+DEGHRIKN C+L +LK
Sbjct: 316 NIHKRKGTLQIHPVVITSFEIAMR--DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR 373
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
+ + ++LLLTGTP +F+ + F WF+ S + + D
Sbjct: 374 FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFD--ITSLSETAEDIIAK 431
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 1359
+++ LHQ+L PF+LRRLK V E+P K E +V S Q++ +
Sbjct: 432 EREQN--VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR-- 487
Query: 1360 SIGNSKGRSVHNSV 1373
+I N G S +V
Sbjct: 488 TIANMFGCSEKETV 501
Score = 440 (159.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 96/228 (42%), Positives = 144/228 (63%)
Query: 1329 NELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
++ P ++E+L+ + + ++ + VE N+ + + + N +M LR CNHPYL +
Sbjct: 523 DDFPNELEKLISQMQPEVDRERAV--VETNI-PVESEVNLKLQNIMMLLRKCCNHPYLIE 579
Query: 1388 LHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+D + + + +V GK +LDR+LP+LKA H+VL FS MTR+LD++ DY
Sbjct: 580 Y---PIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYC 636
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
F+ + + RLDG S +R + FN D FIFL+S RAGG+G+NL AADTVII+D+
Sbjct: 637 HFRNFNFSRLDGSMSYSEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADTVIIYDS 695
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+ KL
Sbjct: 696 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 743
Score = 45 (20.9 bits), Expect = 6.7e-37, Sum P(2) = 6.7e-37
Identities = 28/148 (18%), Positives = 59/148 (39%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENP- 198
+A+G R + + ++ S D S + + + Q +K++ K + + + E
Sbjct: 38 EAAGLERERKMIE-KARMSWDRESVDIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKK 96
Query: 199 -QQLDSRNSVVNPRKGKMNKVDAPGGFSV-----KGAEQSNFNMVPSGGQMEHFSSLSGN 252
++L+ + + KGK N + A V +G E ++N+ + E S N
Sbjct: 97 KEKLERKKETLKVTKGK-NSIGASEENPVVTRKKRGREDESYNIAEVMSKEEILSVAKKN 155
Query: 253 MSSILRVKQEGQNVTEKPLDSANVSNSV 280
+ + N+ + L SNS+
Sbjct: 156 KKENEQKESSSSNLCVEDLQKNKDSNSI 183
Score = 37 (18.1 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 182 RKRGDSSISHEPQNENPQQLDSRNSVVNP 210
R+R SI++ ++ P +L+ S + P
Sbjct: 510 RRRARKSINYSKIDDFPNELEKLISQMQP 538
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 460 (167.0 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 131/435 (30%), Positives = 214/435 (49%)
Query: 952 NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY 1011
+K++ ++++ ++K ++++R+K +L D ++A + K +E E Y
Sbjct: 58 SKFLLTKMEQQQLEEQKKKEKLERKKESLKVTKDKNSIDASEENAVIKK--KRGREDESY 115
Query: 1012 -LQKLGSKLQEAKSMA--SHFENEMDETQTVSVVEKYEPAVENEDE-SDQAKHYLESNEK 1067
+ ++ SK +E S+A + ENE + + + VE + ++ + D+ + N K
Sbjct: 116 NISEVMSK-EEILSVAKKNKKENEDESSSSNMCVEDLQKNKDSNSKIKDRLSQTVRQNTK 174
Query: 1068 YYL--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTV 1124
++ + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMGLGKTV
Sbjct: 175 FFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTV 234
Query: 1125 QVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKE 1184
Q IA I LM + GPF W +E + P I ++Y G +ERR L K
Sbjct: 235 QCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRILVKH 293
Query: 1185 KIVHQKFN------VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+H++ V++T++E M DR L W Y+I+DEGHRIKN C+L +LK
Sbjct: 294 --IHERKGTLQIHPVVITSFEIAMR--DRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELK 349
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+ + ++LLLTGTP +F+ + F WF+ S + + D
Sbjct: 350 RFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFD--ITSLSETAEDIIA 407
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL 1358
+++ LHQ+L PF+LRRLK V E+P K E +V S Q++ +
Sbjct: 408 KEREQN--VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR- 464
Query: 1359 GSIGNSKGRSVHNSV 1373
+I N G S +V
Sbjct: 465 -TIANMFGSSEKETV 478
Score = 438 (159.2 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 99/239 (41%), Positives = 143/239 (59%)
Query: 1321 RRLKHKVE----NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMEL 1376
RR + V+ ++ P ++E+L+ + + + E I + + N +M L
Sbjct: 488 RRTRKSVDYSKIDDFPNELEKLISQIQPEVDR--ERTIVETSVPIESEVNLKLQNIMMLL 545
Query: 1377 RNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
R CNHPYL + +D + + + +V GK +LDR+LP+LK H+VL FS M
Sbjct: 546 RKCCNHPYLIEY---PIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQM 602
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
TR+LD++ DY F+ + + RLDG S +R I FN D FIFL+S RAGG+G+NL
Sbjct: 603 TRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNT-DPDVFIFLVSTRAGGLGINL 661
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
AADTVII+D+DWNPQ DLQAQ R HRIGQ R V+V R T T+++++ RA+A+ KL
Sbjct: 662 TAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAAAKRKL 720
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 797 (285.6 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 193/505 (38%), Positives = 275/505 (54%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
+I + + + G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + +
Sbjct: 845 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 904
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE--- 1184
+ T RGPF WE E W I+ +VY G R+ + F++
Sbjct: 905 LLT-GIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQG 962
Query: 1185 KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+I+ +F ++TT+E ++ +L+ I+W +IIDE HR+KN +CKL LK
Sbjct: 963 RIIRGAYRFQAIITTFEMILGGCG--ELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 1020
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
H++LLTGTP F S F Q F GD +
Sbjct: 1021 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLKTEEQ----- 1068
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
+ +L +L+P +LRRLK VE +L K E ++ E + QK + + E+N +
Sbjct: 1069 -----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1123
Query: 1362 GNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLC 1409
G++ + N++MELR CNHPYL + E++ DT P +L +++
Sbjct: 1124 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSA 1183
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG G R A I
Sbjct: 1184 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 1243
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 1244 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1303
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGV 1554
V R T + E ++ A KLG+
Sbjct: 1304 KVYRLVTRNSYEREMFDRASLKLGL 1328
Score = 113 (44.8 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 78/291 (26%), Positives = 115/291 (39%)
Query: 112 AENEMSKIEPFTSS--RPPVAPSGAGHDYYQASGT--HRSSQSFDHESPSSLDTRSANSQ 167
AE+ +S F S P P+G D S H+++ S +++ S + +S
Sbjct: 90 AEHVLSPHSQFNCSPIHPQNQPNGLFPDVADGSPMWGHQTATSISNQNGSPFH-QQGHSH 148
Query: 168 SQERQKDGK--------KASTKRKRGDSSISHEPQNE-NPQQLDSRNSVVNPRKGKMNKV 218
S + K +AS ++ + S S + +N NP Q NS+ + V
Sbjct: 149 SMHQNKSFVVHHDFALFQASEQQTQCTSLRSQQNRNNLNPGQ----NSLSQSKNFMDVNV 204
Query: 219 DAPGGFSVKGAEQ-SNFNMVPSGGQMEHFSSLSGNMSSILRVK--QEGQ-NVTEKPLDSA 274
P SV Q +N + M+ FS S L+ QEG N + S
Sbjct: 205 SGPHRVSVNHPSQITNASTSQQSLSMQQFSQTSNPSVHFLKCSNHQEGNFNGPSPNMTSC 264
Query: 275 NVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPR 334
+VSNS +S+ F +S N+L A+ VLA T NQ + F S P
Sbjct: 265 SVSNSQQFSSHYSF-------SSNHVSPNNLLQASAVLAPNHT-NQTLSDFTGSNSFSPH 316
Query: 335 FPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
G T T +SL +N F +H SS+P G +S LSPV
Sbjct: 317 -RGIKQESTQHLLNTNTSLNSNNFQMLH-------SSHPQGNYSNSKLSPV 359
Score = 69 (29.3 bits), Expect = 6.8e-76, Sum P(3) = 6.8e-76
Identities = 46/191 (24%), Positives = 77/191 (40%)
Query: 63 NQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPF 122
++N +D+ R+ + SQI ++ST+Q + S Q + S L + + F
Sbjct: 196 SKNFMDVNVSGPHRVSVNHPSQITNASTSQQSLSMQQFSQTSNPSVHFLKCSNHQEGN-F 254
Query: 123 TSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR 182
P + + Q +H S S +H SP++L SA + +
Sbjct: 255 NGPSPNMTSCSVSNS--QQFSSHYSFSS-NHVSPNNLLQASAVLAPNHTNQ-----TLSD 306
Query: 183 KRGDSSIS-HEP-QNENPQQLDSRNSVVNPRKGKMNKVDAP-GGFSVKGAEQSNFNM--- 236
G +S S H + E+ Q L + N+ +N +M P G +S + N
Sbjct: 307 FTGSNSFSPHRGIKQESTQHLLNTNTSLNSNNFQMLHSSHPQGNYSNSKLSPVHMNFPDP 366
Query: 237 VPSGGQMEHFS 247
V SG QM HF+
Sbjct: 367 VDSGTQMGHFN 377
Score = 54 (24.1 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N S + E EE K S P K + K ++++ + +
Sbjct: 543 GERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKESKKTKTCSKLKEKTKIGKLIIT 602
Query: 822 L-KQQKTKQRMS 832
L K+QK K S
Sbjct: 603 LGKKQKRKNESS 614
Score = 44 (20.5 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 176 KKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
K+ ++++R + I + E+ + S V K K N PG
Sbjct: 629 KEEDSQKRRSNRQIKRKKYAEDAEGKQSEEEVQGSVKIKKNSAPLPG 675
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 804 (288.1 bits), Expect = 3.1e-80, Sum P(3) = 3.1e-80
Identities = 202/538 (37%), Positives = 290/538 (53%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
+I + + + G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + +
Sbjct: 842 NIWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 901
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE--- 1184
+ T RGPF WE E W I+ +VY G R+ + F++
Sbjct: 902 LLT-GIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQG 959
Query: 1185 KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+I+ +F ++TT+E ++ +L+ I W +IIDE HR+KN +CKL LK
Sbjct: 960 RIIRGAYRFQAIITTFEMILGGCG--ELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNL 1017
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
H++LLTGTP F S F Q F GD +
Sbjct: 1018 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLKTEEQ----- 1065
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
+ +L +L+P +LRRLK VE +L K E ++ E + QK + + E+N +
Sbjct: 1066 -----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1120
Query: 1362 GNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLC 1409
G++ + N++MELR CNHPYL + E++ DT P +L +++
Sbjct: 1121 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSA 1180
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG G R A I
Sbjct: 1181 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 1240
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 1241 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1300
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDR--REYLESLLR 1582
V R T + E ++ A KLG+ QS++ D+N S + ++ +E LLR
Sbjct: 1301 KVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR--DSNVSGIQQLSKKEIEDLLR 1356
Score = 108 (43.1 bits), Expect = 3.1e-80, Sum P(3) = 3.1e-80
Identities = 80/297 (26%), Positives = 119/297 (40%)
Query: 104 VKDSKAGLAENEMSKIEPFTSS--RPPVAPSGAGHDYYQASGT--HRSSQSFDHESPSSL 159
V S E+ +S F S PP P+G D S H+++ +++ S
Sbjct: 82 VNQSFGSPVEHVLSPHSQFNCSPIHPPNQPNGLFQDVADGSPMWGHQTATGLANQNGSPF 141
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVD 219
+ +S S + K A +S H+ Q + SR+++ NP + + +
Sbjct: 142 H-QPGHSHSLHQNKSFV-AHPDFALFQAS-EHQTQCSSLHSQQSRSNL-NPGQNSLGQAK 197
Query: 220 APGGFSVKGAEQSNFNMV---PSGGQM--EHFSSLSGNMSSILRVK--QEGQNVTEKP-L 271
+V GA + N N + PS Q FS + + L+ QEG P +
Sbjct: 198 NFLDANVSGAHRVNVNHLATAPSSQQTLPVQFSPTANPPAHFLKCSSHQEGNYNRPSPSM 257
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQ 331
S +VSNS +FP S SG +SL ++ LA G NQ + F S
Sbjct: 258 TSCSVSNS------QQFPSHYSFS-SGHVSPSSLLQSSAGLAP-GHTNQALSDFAGSNSF 309
Query: 332 VPRFPGNMMIETPMQQ---PTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
P G M + P Q PT SL +N F +H SS+P G +S LSPV
Sbjct: 310 SPH-RG--MKQEPTQHLLNPT-PSLNSNNFQILH-------SSHPQGNYSNSKLSPV 355
Score = 49 (22.3 bits), Expect = 3.1e-80, Sum P(3) = 3.1e-80
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N S + E EE + S P + K + K K + + I
Sbjct: 540 GERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKPKTYSKL-KEKTKIGKLII 598
Query: 822 LKQQKTKQRMSTCFNKLKESVSSSEDISAKT 852
+K K+R N+ + +S +E S T
Sbjct: 599 TLGKKHKRR-----NESSDELSDAEQRSQHT 624
Score = 47 (21.6 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 166 SQSQER-QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
S +++R Q K+ ++++R + I + E+ + S V + K N PG
Sbjct: 615 SDAEQRSQHTFKEQHSQKRRSNRQIKRKKYAEDAEGKQSEEEVKGSLRVKRNSAPPPG 672
Score = 46 (21.3 bits), Expect = 9.8e-74, Sum P(3) = 9.8e-74
Identities = 30/113 (26%), Positives = 45/113 (39%)
Query: 117 SKIEPFTSSRPP-VAPSGAGHDYYQAS-GTHRSSQSFDHESPSSLDTRSANSQSQERQKD 174
S EPF P + G + ++ G S+ DH+ LD R S R D
Sbjct: 394 SHAEPFAGLDPEDLLQEGLLPQFDESPFGQDNSNHVLDHD----LD-RQFTSHLVSRPSD 448
Query: 175 GKKASTK-RKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKV-DAPGGFS 225
+ + + RG S P + N Q L SRN + R+ +K D G ++
Sbjct: 449 MAQTQLQYQARGWPS----PLSTNHQHLHSRNHLCLQRQPPSSKKSDGSGTYT 497
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 495 (179.3 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 142/488 (29%), Positives = 234/488 (47%)
Query: 927 FSEIEAHKERLDEVFKIKRER---WRGVNKYVKEFHKRKER--IHREKID------RIQR 975
F I+ +K+ + + RE W+ + ++ K+ ER + R K + R Q
Sbjct: 669 FRTIKNNKDMQTKAKRAMRETMVFWKRNERVERDLRKKAEREALDRAKKEEELRESRRQA 728
Query: 976 EKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY-LQKLGSKLQEAKSMAS-HFENEM 1033
K++ L I E Y V K DR L T + ++ E + + E+
Sbjct: 729 RKLDFL-ITQTELYSHFV-GRKMDREQDLPSATNTASVSEINFDSDEEEDIRRLAVESAQ 786
Query: 1034 DETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLRE 1093
+ Q + A + ++ + + E + + +QP L KL+E
Sbjct: 787 EAVQKAREHSQLFDANRQQSPNNSSSD-MNEGEMNFQNPTLVNAFEVKQPKMLMC-KLKE 844
Query: 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX 1153
YQ+ GL WL +LY +NGILADEMGLGKTVQ I+++ YL ET N GPF
Sbjct: 845 YQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLH 904
Query: 1154 GWESEINFWAPRIHKIVYCGPPEERR--RLF--KEKIVHQK---FNVLLTTYEYLMNKHD 1206
W+ EI + P++ I Y G ++R+ R F ++ + + + F+V++T+Y+ ++ D
Sbjct: 905 NWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVL--D 962
Query: 1207 RPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXX 1266
++W Y+I+DE IK++S L ++ +RLLLTGTP
Sbjct: 963 AQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022
Query: 1267 XXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHK 1326
+F+S +FS+WF+K ES+ ++ + RLH +L+PF+LRR+K
Sbjct: 1023 IMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQ-------LKRLHMILKPFMLRRVKKN 1075
Query: 1327 VENELPEKIERLVRCEASAYQKLLMKRVEENLG-------SI--GNSKGRSVHNSVMELR 1377
V++EL EKIE+ V C+ + QK+L + + + +I G+ S+ N VM+ R
Sbjct: 1076 VQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTVASIMNLVMQFR 1135
Query: 1378 NICNHPYL 1385
+CNHP L
Sbjct: 1136 KVCNHPDL 1143
Score = 409 (149.0 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 83/164 (50%), Positives = 113/164 (68%)
Query: 1402 LPPIVRLC---GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458
+P ++R GKL LD+LL +LKA DHRVL + MTR++D+ME+YLTF+QY+YLRLDG
Sbjct: 1418 IPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDG 1477
Query: 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 1518
+ R ++ ++ Q F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA
Sbjct: 1478 SSKISQRRDMVTEW-QTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMD 1536
Query: 1519 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
RAHRIGQ++ V V RF T T+EE++ A+ K V I+ G
Sbjct: 1537 RAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGG 1580
Score = 56 (24.8 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 560 ADSSSKEVENLKMMDKSGPPADHSIHAEE--RKQLATGKLEAEMQSQETAESQAFFTS-A 616
AD SSK+ N + + + P+ + AE R + + K A++ S +S+ + A
Sbjct: 450 ADLSSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDA 509
Query: 617 SQQLESASTRGTLAITNPV 635
S Q ++ G + P+
Sbjct: 510 SLQSAGVASDGESSPETPL 528
Score = 55 (24.4 bits), Expect = 5.5e-80, Sum P(3) = 5.5e-80
Identities = 32/149 (21%), Positives = 59/149 (39%)
Query: 66 GLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSS 125
G+ + S PLT S+ + ++ A +S+ A G ++ K + TS
Sbjct: 515 GVASDGESSPETPLTKASKSKKAKASKLANDTSKNAN-------GETKSTPKKSKKKTSK 567
Query: 126 RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG 185
A S + SG + + ++ S+ DT+ AN+ + K K T +++
Sbjct: 568 AQQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTK-ANATASAPNKKKKTVETLQQQV 626
Query: 186 DSSISHE--PQNENPQQLDSRNSVVNPRK 212
I+ + P+ Q + N N RK
Sbjct: 627 IKEIARKEIPRVYKIIQQNQYNRSTNARK 655
Score = 53 (23.7 bits), Expect = 8.8e-80, Sum P(3) = 8.8e-80
Identities = 41/219 (18%), Positives = 95/219 (43%)
Query: 9 LEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLD 68
+EAAK I+ +++ K + +LQ +S+ K+ M + + E ++ L
Sbjct: 397 VEAAK-----IRADEEKKKKEREEQVRLLQ--ESADKDAEMN-EASTATSENEDLKDDLS 448
Query: 69 MEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKD--SKAGLAENEMSKIEPFTSSR 126
+ L S + + ++ ++ + + S+V K S+A L+ + E ++
Sbjct: 449 LADLSSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNND 508
Query: 127 PPVAPSGAGHDYYQASGTHRSSQSFDHESPSSL---DT-RSANSQSQERQKDGKKASTKR 182
+ +G D + T + S ++ +S DT ++AN +++ K KK ++K
Sbjct: 509 ASLQSAGVASDGESSPETPLTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKA 568
Query: 183 KRGDSSISHEPQNE-NPQQLDSRNSVVNPRKGKMNKVDA 220
++ +S + E + + + ++ NS + K +A
Sbjct: 569 QQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANA 607
Score = 47 (21.6 bits), Expect = 3.8e-79, Sum P(3) = 3.8e-79
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 379 SSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAML 438
S A ES++ S + D++ A LSS + + + N + A S P T +
Sbjct: 470 SKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLT 529
Query: 439 RTMASRDTGKSSVS 452
+ S+ S ++
Sbjct: 530 KASKSKKAKASKLA 543
Score = 45 (20.9 bits), Expect = 6.1e-79, Sum P(3) = 6.1e-79
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 548 PPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETA 607
P S S L +DS E ++ + + P SI A + + G A+ S ++
Sbjct: 218 PMHSSISISTLLSDSDRYE-PHVSLTENISPVMAPSIDARLSQTILRGLPPAQKLSPNSS 276
Query: 608 ESQAFFTSASQQLE-SASTRGTLAIT 632
+SQ +L +A+T ++ +T
Sbjct: 277 QSQITHNRRKHKLPLNATTNNSVVLT 302
Score = 43 (20.2 bits), Expect = 9.9e-79, Sum P(3) = 9.9e-79
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 574 DKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQA 611
DK + S E + L A++ S++TA SQA
Sbjct: 425 DKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQA 462
Score = 37 (18.1 bits), Expect = 4.2e-78, Sum P(3) = 4.2e-78
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 581 DHSIHAEERKQL 592
D ++HAE+R+ L
Sbjct: 341 DEAVHAEKRRLL 352
Score = 37 (18.1 bits), Expect = 4.2e-78, Sum P(3) = 4.2e-78
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 718 SSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQ 754
SS+ Q + D Y+++P DA+ + H ++
Sbjct: 150 SSYPHAAQARVDPSISKDLYNMVPRPDANTVSPHAAR 186
Score = 37 (18.1 bits), Expect = 3.5e-41, Sum P(3) = 3.5e-41
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ-ARAHRIGQKR 1527
++DSPF+ + ++L D+V++ P +D+ +R + Q R
Sbjct: 1311 KEDSPFYHLTHVLEESDSQLDLTLLDSVLVQRAS-APPIDIYCPGSRQFTVLQSR 1364
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 848 (303.6 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 221/659 (33%), Positives = 335/659 (50%)
Query: 931 EAHKERLDEVFK-IKRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEG 988
E+H E ++ I + R + ++ Y K+F +++ + + E I ++ D+E
Sbjct: 220 ESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPY--VTAEDIEIM---DMER 274
Query: 989 YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQE-AKSMASHFENEMDETQTVSVVEKYEP 1047
R+ + + +++ L+ S+LQ K +++ E T +V+
Sbjct: 275 ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENAT-DIVKLAPE 333
Query: 1048 AVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
V++ + +K L Y E +S QP ++GG+LR++Q++G+ W+ L++
Sbjct: 334 QVKHFQNRENSK-ILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWS 392
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIH 1167
NGILADEMGLGKTVQ +A I +L+ + GP W WAP ++
Sbjct: 393 KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLN 452
Query: 1168 KIVYCGPPEERRRLFKEKIVHQ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218
I Y G + R + + + KFNVLLTTYEY++ DR +L I+W ++
Sbjct: 453 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK--DRAELGSIKWQFM 510
Query: 1219 IIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDF 1278
+DE HR+KNA L L ++ ++R+L+TGTP F ++
Sbjct: 511 AVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEI 570
Query: 1279 SQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERL 1338
FE+ + + I+ LH+ ++PF+LRRLK VE LP K ER+
Sbjct: 571 D------FENQDEEQEEY-----------IHDLHRRIQPFILRRLKKDVEKSLPSKTERI 613
Query: 1339 VRCEASAYQKLLMKRV-EENLGSI-GNSKGR--SVHNSVMELRNICNHPYLSQLHAEEV- 1393
+R E S Q K + +N ++ +KG S+ N + EL+ NHPYL E V
Sbjct: 614 LRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVL 673
Query: 1394 ----D-TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448
D + ++ L ++ GK+ +LD+LL +LK HRVL FS M R+LD++ DYL+
Sbjct: 674 QKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI 733
Query: 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 1508
K + RLDG R ID FN DS F+FLLS RAGG+G+NL ADTV+IFD+DW
Sbjct: 734 KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW 793
Query: 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN 1567
NPQ DLQA ARAHRIGQK V+V R + TVEE+V A K+ + I+ G D N
Sbjct: 794 NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGN 852
Score = 50 (22.7 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 28/144 (19%), Positives = 51/144 (35%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
++ G S + D E D + Q R K + +K K S S +
Sbjct: 62 EFEDEEGEEDSGEDEDEEDFEEDDDYYGSPIKQNRSKPKSRTKSKSKSKPKSQSEKQSTV 121
Query: 197 N-PQQLDSR-NSVVNPRKGKMNK--VDAPGGF-SVKGAEQSNFNMVPSGGQMEHFSSLSG 251
P + +R N VN + +++ + S + + N + + Q E F +
Sbjct: 122 KIPTRFSNRQNKTVNYNIDYSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDI 181
Query: 252 NMSSILRVKQEGQNVTEKPLDSAN 275
++ L+ E V EK + N
Sbjct: 182 VINHRLKTSLEEGKVLEKTVPDLN 205
Score = 37 (18.1 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 785 EDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVE 817
ED+ + D P T + IMDM++ + L E
Sbjct: 252 EDQQVRLD----PYVTAEDIEIMDMERERRLDE 280
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 849 (303.9 bits), Expect = 7.7e-80, Sum P(2) = 7.7e-80
Identities = 219/652 (33%), Positives = 333/652 (51%)
Query: 948 WRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKE 1007
+R ++ Y+K+F + I + + +E + + D+E + + + V +++ +
Sbjct: 224 FRKLDNYIKQFIIYDDEIRNDPLTT--KEDLEAM---DIERERKRDEQDEYTHVERIV-D 277
Query: 1008 TEKYLQKLG-SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNE 1066
+E+ G +KLQ + +E + + V + +K +
Sbjct: 278 SERVETDDGETKLQYFVKWKRLYYDECSWEDAEEIAKIAPEQVTKYQQRLNSKILPSLSA 337
Query: 1067 KYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV 1126
Y L E + +QP ++ G+LR++Q++GL W+ L++ NGILADEMGLGKTVQ
Sbjct: 338 NYPLSQRPRFEKLFKQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQT 397
Query: 1127 IALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186
+A + +L+ + GP W+ WAP ++ + Y G E R+ + + ++
Sbjct: 398 VAFLSWLIYARRQNGPHLVVVPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIREYEL 457
Query: 1187 VHQ----KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+Q KFNVLLTTYEY++ D+ +L +W ++ +DE HR+KNA L LK ++
Sbjct: 458 YNQNRKPKFNVLLTTYEYILK--DKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKV 515
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
S+RLL+TGTP F ++ FE+ D+ +
Sbjct: 516 SNRLLITGTPLQNNVKELAALCNFLMPGKFTIDQEID------FETI-DSEQEQY----- 563
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
I L + + PF+LRRLK VE LP K ER++R E S Q K + +N ++
Sbjct: 564 -----IKDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAAL 618
Query: 1362 --GNSKGR-SVHNSVMELRNICNHPYLSQLHAEEV-DTL-IP--KHYLPPIVRLCGKLEM 1414
GN + S+ N + EL+ NHPYL ++V D P ++ L IV GK+ +
Sbjct: 619 NAGNRGSQISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVL 678
Query: 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474
L++LL +L+ HRVL FS M R+LD++ DY+ K Y++ RLDG R ID FN
Sbjct: 679 LEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNA 738
Query: 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 1534
S F FLLS RAGG+G+NL ADTVIIFD+DWNPQ DLQA ARAHRIGQK V V RF
Sbjct: 739 PGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRF 798
Query: 1535 ETVQTVEEQVRASAEHKLGVANQSITAGFFD----NNTSAEDRREYLESLLR 1582
+ TVEEQ+ A K+ + I+ G D N + E L +L+
Sbjct: 799 VSKDTVEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILK 850
Score = 37 (18.1 bits), Expect = 7.7e-80, Sum P(2) = 7.7e-80
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQ---LDSRNS 206
++ K K S K+K ++ Q+ +P Q SRN+
Sbjct: 87 KKMKSKPKTSKKQKGKNTKARKTKQSPSPPQELRFSSRNN 126
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 520 (188.1 bits), Expect = 1.6e-79, Sum P(3) = 1.6e-79
Identities = 125/354 (35%), Positives = 192/354 (54%)
Query: 1066 EKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTV 1124
E Y L SI+ QPT G KL+ YQ+ G+ WL +LY +NGILADEMGLGKTV
Sbjct: 496 ESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTV 554
Query: 1125 QVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER---RRL 1181
Q IAL+ +L E +N GPF W E + P+ + Y G P +R RR
Sbjct: 555 QSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF 614
Query: 1182 FKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+ +K ++ + F+V++T+Y+ ++ D +++W Y+++DE +K++S L
Sbjct: 615 WSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILL 672
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+Q +RLLLTGTP +F+S E+F++WF+K ES+ +N
Sbjct: 673 QFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK----- 727
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE--- 1355
++RLH +L+PF+LRR+K VENEL +KIE L+ C+ ++ QKLL + ++
Sbjct: 728 --SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKI 785
Query: 1356 --ENL--GSIGNSKGR-----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400
E+L S+G+++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 786 SIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 835
Score = 372 (136.0 bits), Expect = 1.6e-79, Sum P(3) = 1.6e-79
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1105 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1164
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1165 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1223
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1224 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1262
Score = 61 (26.5 bits), Expect = 1.6e-79, Sum P(3) = 1.6e-79
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 333 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 391
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
I E Y + K D + ++E + L+KL
Sbjct: 392 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKL 421
Score = 40 (19.1 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 1050 ENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
+NE+E ++ H S E+ + M K Q + +L++YQ L+S Y+
Sbjct: 144 DNEEEEEEELHL--SREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAG-LLSTYD 198
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 797 (285.6 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 193/505 (38%), Positives = 275/505 (54%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
+I + + + G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + +
Sbjct: 844 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 903
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE--- 1184
+ T RGPF WE E W I+ +VY G R+ + F++
Sbjct: 904 LLT-GIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQG 961
Query: 1185 KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+I+ +F ++TT+E ++ +L+ I+W +IIDE HR+KN +CKL LK
Sbjct: 962 RIIRGAYRFQAIITTFEMILGGCG--ELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 1019
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
H++LLTGTP F S F Q F GD +
Sbjct: 1020 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLKTEEQ----- 1067
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
+ +L +L+P +LRRLK VE +L K E ++ E + QK + + E+N +
Sbjct: 1068 -----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1122
Query: 1362 GNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLC 1409
G++ + N++MELR CNHPYL + E++ DT P +L +++
Sbjct: 1123 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSA 1182
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG G R A I
Sbjct: 1183 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 1242
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 1243 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1302
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGV 1554
V R T + E ++ A KLG+
Sbjct: 1303 KVYRLVTRNSYEREMFDRASLKLGL 1327
Score = 101 (40.6 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 80/330 (24%), Positives = 122/330 (36%)
Query: 104 VKDSKAGLAENEMSKIEPFTSS--RPPVAPSGAGHDYYQASGT--HRSSQSFDHESPSSL 159
V S AE+ +S F S P P+G D S H+++ S +++ S
Sbjct: 82 VNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVADGSPMWGHQTATSISNQNGSPF 141
Query: 160 DTRSANSQSQERQK------DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
+ +S S + K D ++ + QN N L+ + ++ K
Sbjct: 142 H-QPGHSHSMHQTKSFVAHHDFALFQANEQQTQCTSLRSQQNRN--NLNPGQNSLSQSKT 198
Query: 214 KMN-KVDAPGGFSVKGAEQ-SNFNMVPSGGQMEHFSSLSGNMSSILRVK--QEGQ-NVTE 268
M+ V P SV Q +N + M+ FS S L+ QEG N
Sbjct: 199 FMDVNVSGPHRVSVNHPPQMNNASTSQQSLSMQQFSQTSNPSVHFLKCSSHQEGNFNGPS 258
Query: 269 KPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFE 328
+ S +VSNS +S+ F +S NSL + VLA T NQ + F
Sbjct: 259 PNMTSCSVSNSQQFSSHYSF-------SSNHVSPNSLLQPSAVLAPNHT-NQTLSDFTGS 310
Query: 329 RSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQ 388
S P M P +SL +N F +H + P G + + + PV+S
Sbjct: 311 NSFSPHRGIKQESTQHMLNPN-TSLNSNNFQMLHSSHPQGNYNSKLSPVHMNFPDPVDSG 369
Query: 389 LFSTNRGD--ETSAMLSSGKVLEHDGSSNT 416
+ D ET+ S + L H S T
Sbjct: 370 TQMGHFSDHVETNGFSSLEENLLHQVESQT 399
Score = 56 (24.8 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N S + E EE K S P K + K ++++ + +
Sbjct: 542 GERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKESKKTKTCSKLKEKTKIGKLIIT 601
Query: 822 L-KQQKTKQRMSTCFNKLKESVSSS--EDISAKTKS 854
L K+QK K S + ++ + E+ S K +S
Sbjct: 602 LGKKQKRKNESSDEISDAEQMTQHAFKEEDSQKRRS 637
Score = 47 (21.6 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 169 QERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
Q Q K+ ++++R + I + E+ + S V K K N PG
Sbjct: 621 QMTQHAFKEEDSQKRRSNRQIKRKKYAEDAEGKQSEEEVKGSMKIKKNSAPLPG 674
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 824 (295.1 bits), Expect = 1.9e-79, Sum P(2) = 1.9e-79
Identities = 208/525 (39%), Positives = 289/525 (55%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 763 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 819
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 820 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 878
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 879 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 936
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 937 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 979
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 980 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1039
Query: 1372 SVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKL 1422
++MELR CNHPYL AEE + T +IP + L +VR GKL ++D+LLPKL
Sbjct: 1040 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1099
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+F
Sbjct: 1100 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1159
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E
Sbjct: 1160 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 1219
Query: 1543 QVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1220 EMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1263
Score = 73 (30.8 bits), Expect = 1.9e-79, Sum P(2) = 1.9e-79
Identities = 45/178 (25%), Positives = 76/178 (42%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G + N+ D +PP ++ L +S++ E+L + D + P A+ Q T
Sbjct: 56 GDVANSSANDLVPPPEETAPTELPKESTAPAPESLTLHDYTTQPVSQEQPAQPVLQTPTP 115
Query: 595 --GKLEAEMQSQETAESQAF-FTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVA 651
G L+ +SQE + QA TS +Q L + + G +T V G R V+
Sbjct: 116 TSGLLQVS-KSQEIXQIQAQGITSTAQPLVAGTANGG-KVT--FTKVLTGTPL--RPGVS 169
Query: 652 SVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASG 709
V+G N + +++ + P RP+ +Q VK + P G+ GA+G
Sbjct: 170 IVSG-NTVLAAKVPGNQATVQRIVQPSRPVKQLVLQP--VKGSAPA-----GNPGATG 219
Score = 55 (24.4 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 39/228 (17%), Positives = 81/228 (35%)
Query: 79 LTSGSQIGDSSTAQCAGSSSQVA-GVVKDSKAGL---AENEMSKIEPFTSSRPPVAPSGA 134
L+S Q Q G V VV +AG A + +S ++ +++ S A
Sbjct: 328 LSSVQQAQIMGPGQAPGQRLSVPLKVVLQPQAGSSQGASSGLSVVKVLSATEVAALSSPA 387
Query: 135 GHDYYQASGTH-RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEP 193
+ T ++ +H+ R + G++ + D S P
Sbjct: 388 SSAPHTGGKTGIEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRP 447
Query: 194 QNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNM 253
+ E ++ ++S ++ K K G KG + N + P G+ ++ S N
Sbjct: 448 EEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLN-TITPVVGKKRKRNTSSDNS 506
Query: 254 SSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
+ Q + E + + V R K+ E++++ + ++
Sbjct: 507 DVEVMPAQSPREDEESSIQKRRSNRQVKR---KKYTEDLDIKITDDEE 551
Score = 48 (22.0 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 78/386 (20%), Positives = 145/386 (37%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
S +S Q Q DG + + P+ P +L ++ P ++
Sbjct: 42 SLDSLDQMNQ-DGGGGDVANSSANDLVP-PPEETAPTELPKESTAPAPESLTLHDYTTQP 99
Query: 223 GFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPR 282
+ A+ P+ G ++ S I +++ +G T +PL V+ +
Sbjct: 100 VSQEQPAQPVLQTPTPTSGLLQVSKS-----QEIXQIQAQGITSTAQPL----VAGT--- 147
Query: 283 ASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIE 342
A+ K ++ + + G S+ S N VLA++ NQ +R P P ++
Sbjct: 148 ANGGKVTFTKVLTGTPLRPGVSIVSGNTVLAAKVPGNQATV----QRIVQPSRPVKQLVL 203
Query: 343 TPMQ-QPTVSSLGANAFGKVHGAMPIGPSSYPT-GELGSSALSPVESQLFSTNRGDETSA 400
P++ + GA + A+ + +S PT GE S ++ V Q S
Sbjct: 204 QPVKGSAPAGNPGATG-PPLKPAVTL--TSTPTQGE--SKRITLVLQQPQSGGPQGHRHV 258
Query: 401 MLSS--GKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFS 458
+L S GK++ L+ A A G+ V T L+ + + V Q P
Sbjct: 259 VLGSLPGKIVLQGNQLAALTQAKNAQ--GQPAKVV-TIQLQVQQPQQKIQI-VPQPPSSQ 314
Query: 459 GMPFKEQQLKQLRAQCLVFLAFRN-GLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTM 517
P + + + + G P + L + L + + G+ G+ L +
Sbjct: 315 PQPQQPPSTQPVTLSSVQQAQIMGPGQAPGQ-RLSVPLKVVLQPQAGSSQGASSGL-SVV 372
Query: 518 KVQSSNDPS--SAPGVTAPY--GRLG 539
KV S+ + + S+P +AP+ G+ G
Sbjct: 373 KVLSATEVAALSSPASSAPHTGGKTG 398
Score = 41 (19.5 bits), Expect = 4.5e-76, Sum P(2) = 4.5e-76
Identities = 30/139 (21%), Positives = 52/139 (37%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 405 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 461
Query: 97 SSQVAGVVKDSK-AGLAENE-MSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDH 153
K SK +G ++ + SK+ T P V + S +QS
Sbjct: 462 ERLKEEKPKKSKTSGTSKTKGKSKLNTIT---PVVGKKRKRNTSSDNSDVEVMPAQSPRE 518
Query: 154 ESPSSLDTRSANSQSQERQ 172
+ SS+ R +N Q + ++
Sbjct: 519 DEESSIQKRRSNRQVKRKK 537
Score = 41 (19.5 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
G+SSG + S+ EV L S P EE ++L K + E ++ AE+
Sbjct: 364 GASSGLSVVKVLSATEVAALSSPASSAPHTGGKTGIEENRRLEHQKKQ-EKANRIVAEAI 422
Query: 611 AFFTSASQQ 619
A + +Q
Sbjct: 423 ARARARGEQ 431
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 797 (285.6 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 193/505 (38%), Positives = 275/505 (54%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
+I + + + G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + +
Sbjct: 843 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 902
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE--- 1184
+ T RGPF WE E W I+ +VY G R+ + F++
Sbjct: 903 LLT-GIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQG 960
Query: 1185 KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+I+ +F ++TT+E ++ +L+ I+W +IIDE HR+KN +CKL LK
Sbjct: 961 RIIRGAYRFQAIITTFEMILGGCG--ELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 1018
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
H++LLTGTP F S F Q F GD +
Sbjct: 1019 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLKTEEQ----- 1066
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
+ +L +L+P +LRRLK VE +L K E ++ E + QK + + E+N +
Sbjct: 1067 -----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1121
Query: 1362 GNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLC 1409
G++ + N++MELR CNHPYL + E++ DT P +L +++
Sbjct: 1122 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSA 1181
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG G R A I
Sbjct: 1182 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 1241
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 1242 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1301
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGV 1554
V R T + E ++ A KLG+
Sbjct: 1302 KVYRLVTRNSYEREMFDRASLKLGL 1326
Score = 104 (41.7 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 74/296 (25%), Positives = 114/296 (38%)
Query: 104 VKDSKAGLAENEMSKIEPFTSS--RPPVAPSGAGHDYYQASGT--HRSSQSFDHESPSSL 159
V S AE+ +S F S P P+G D S H+++ + +++ S
Sbjct: 82 VNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVSDGSPMWGHQTATTISNQNGSPF 141
Query: 160 DTRSANSQSQERQK------DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
+ +S S + K D ++ + QN N L+ + ++ K
Sbjct: 142 H-QQGHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQQNRN--NLNPGQNSLSQSKN 198
Query: 214 KMNKVDAPGGFSVKGAEQ-SNFNMVPSGGQMEHFSSLSGNMSSILRVK--QEGQ-NVTEK 269
MN V P +V Q +N + M+ FS S + + QEG N
Sbjct: 199 FMN-VSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSP 257
Query: 270 PLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFER 329
+ S +VSNS +S+ F +S NSL ++ VLAS T NQ + F
Sbjct: 258 NMTSCSVSNSQQFSSHYSF-------SSNHISPNSLLQSSAVLASNHT-NQTLSDFTGSN 309
Query: 330 SQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
S P + P +SL +N F +H SS+P G +S LSPV
Sbjct: 310 SFSPHRGIKQESTQHILNPN-TSLNSNNFQILH-------SSHPQGNYSNSKLSPV 357
Score = 52 (23.4 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 23/91 (25%), Positives = 37/91 (40%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N + + E EE K S P K + K + K K + + I
Sbjct: 541 GERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKL-KEKTKIGKLII 599
Query: 822 LKQQKTKQRMSTCFNKLKESVSSSEDISAKT 852
+K K++ N+ + +S +E + T
Sbjct: 600 TLGKKQKRK-----NESSDEISDAEQMPQHT 625
Score = 52 (23.4 bits), Expect = 6.7e-74, Sum P(3) = 6.7e-74
Identities = 31/114 (27%), Positives = 48/114 (42%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS-HEP-QNEN 197
Q +H S S +H SP+SL SA S + + G +S S H + E+
Sbjct: 268 QQFSSHYSFSS-NHISPNSLLQSSAVLASNHTNQ-----TLSDFTGSNSFSPHRGIKQES 321
Query: 198 PQQLDSRNSVVNPRKGKMNKVDAP-GGFSVKGAEQSNFNM---VPSGGQMEHFS 247
Q + + N+ +N ++ P G +S + N V SG QM HF+
Sbjct: 322 TQHILNPNTSLNSNNFQILHSSHPQGNYSNSKLSPVHMNFPDPVDSGTQMGHFN 375
Score = 47 (21.6 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 19/93 (20%), Positives = 40/93 (43%)
Query: 705 SGASGNQHANSHLSSFSIRDQWKPVSGT--DSDRYSLIP---VKDASGMLRHTSQDDPKF 759
S + H N LS F+ + + P G +S ++ L P + + + H+S +
Sbjct: 290 SAVLASNHTNQTLSDFTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNY 349
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTD 792
S+ S+ PV + + + T+ + + T+
Sbjct: 350 SN-SKLSPVHMNFPDPVDSGTQMGHFNDHVETN 381
Score = 46 (21.3 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
++ SS + A Q KD ++++R + I + E+ + S V K
Sbjct: 608 KNESSDEISDAEQMPQHTLKD---QDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKI 664
Query: 214 KMNKVDAPG 222
K N PG
Sbjct: 665 KKNSAPLPG 673
Score = 44 (20.5 bits), Expect = 4.6e-73, Sum P(3) = 4.6e-73
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 368 GPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSD 419
GPS T S++ FS+N S +L S VL + ++ TLSD
Sbjct: 254 GPSPNMTSCSVSNSQQFSSHYSFSSNHISPNS-LLQSSAVLASNHTNQTLSD 304
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 805 (288.4 bits), Expect = 3.4e-79, Sum P(3) = 3.4e-79
Identities = 231/684 (33%), Positives = 340/684 (49%)
Query: 943 IKRERWRGVNKYVKEF---HKRKERIHRE--------KIDRIQREKINLLKINDVEGYLR 991
+K+E GV ++EF +K +H E K RIQ +KI K+ +
Sbjct: 700 VKKEVSPGVMLDIEEFFVKYKNYSYLHCEWATEQQLLKDKRIQ-QKIKRFKLRQAQR-AH 757
Query: 992 MVQDAKSDRVNKLLKETEKYLQ-KLGSKLQEAKSMASHFENEMD---ETQTVSVVEKYEP 1047
+ D + + N E ++ L+ +S+ + E T + E +
Sbjct: 758 FLADMEEEPFNPDYVEVDRILEVSFCEDKDTGESVVYYLVKWCSLPYEDSTWELKEDVDL 817
Query: 1048 AVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
A E E QA + +I + + + G +LREYQ+ GL WL+ +
Sbjct: 818 AKIEEFEQLQASR--PDTRQLDRPPSNIWKKIDQSREYKNGNQLREYQLEGLNWLLFNWY 875
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIH 1167
N+ N ILADEMGLGKT+Q I + ++ T RGPF WE E W I+
Sbjct: 876 NRRNCILADEMGLGKTIQSITFLYEVLLT-GIRGPFLIIAPLSTIANWEREFRTWTD-IN 933
Query: 1168 KIVYCGPPEERRRL------FKE---KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWH 1216
+VY G R+ + F++ +I+ +F ++TT+E ++ +L+ I+W
Sbjct: 934 VVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCG--ELNAIEWR 991
Query: 1217 YIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
+IIDE HR+KN +CKL LK H++LLTGTP F S
Sbjct: 992 CVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSES 1051
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
F Q F GD + + +L +L+P +LRRLK VE L K E
Sbjct: 1052 TFMQEF-------GDLKTEEQ----------VQKLQAILKPMMLRRLKEDVEKRLAPKEE 1094
Query: 1337 RLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAE 1391
++ E + QK + + E+N + G++ + N++MELR CNHPYL + E
Sbjct: 1095 TIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEE 1154
Query: 1392 EV-----DTLIPK---HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443
++ DT P +L +++ GKL ++D+LLPK+KA H+VL FS M R LD++E
Sbjct: 1155 KIIGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILE 1214
Query: 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503
DYL K+Y Y R+DG G R A ID+F++ DS F+FLL RAGG+G+NL AADT II
Sbjct: 1215 DYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCII 1274
Query: 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSIT 1560
FD+DWNPQ DLQAQAR HRIGQ + V V R T + E ++ A KLG+ QS++
Sbjct: 1275 FDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMS 1334
Query: 1561 AGFFDNNTSAEDR--REYLESLLR 1582
D+N S + ++ +E LLR
Sbjct: 1335 GR--DSNVSGIQQLSKKEIEDLLR 1356
Score = 105 (42.0 bits), Expect = 3.4e-79, Sum P(3) = 3.4e-79
Identities = 72/296 (24%), Positives = 117/296 (39%)
Query: 104 VKDSKAGLAENEMSKIEPFTSS--RPPVAPSGAGHDYYQASGT--HRSSQSFDHESPSSL 159
V S E+ +S F S PP P+G D S H+++ +++ S
Sbjct: 82 VNQSFGSPVEHVLSPHSQFNCSPIHPPNQPNGLFQDVADGSPMWGHQTATGLSNQNGSPF 141
Query: 160 DTRS-ANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKV 218
+ ++S Q + + G+ H+ Q + + +R ++ NP + + +
Sbjct: 142 HQQGHSHSLHQNKSFVTHHDFALFQAGE----HQTQCSSLRSQQNRTNL-NPGQNSLGQA 196
Query: 219 DAPGGFSVKGAEQSNFNMV---PSGGQM--EHFSSLSGNMSSILRV--KQEGQNVTEKP- 270
+ +V GA + N N + PS Q FS + + L+ +Q+G P
Sbjct: 197 KSFIDTNVSGAHRVNVNHLTSAPSSQQTLPVQFSPTANPPAHFLKCSSQQDGSYNRPSPS 256
Query: 271 LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERS 330
+ S +VSNS P FP S+ + L S G+ S NQ + F S
Sbjct: 257 MTSCSVSNSQP------FPAHYSFSSGHVSPSSLLQSPAGLTPSHS--NQALSDFAGSNS 308
Query: 331 QVPRFPGNMMIETP-MQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPV 385
P G TP + PT SL +N F +H SS+P G +S LSP+
Sbjct: 309 FSPH-RGMKQEPTPHILNPT-PSLNSNNFQILH-------SSHPQGNYSNSKLSPM 355
Score = 41 (19.5 bits), Expect = 3.4e-79, Sum P(3) = 3.4e-79
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N S + + EE ++ S P + K + K K + + I
Sbjct: 540 GERNIPRVMSPENFPSSSVDGKEEKRAQRVKSKPKDRDNRKPKACSKL-KEKTKIGK-LI 597
Query: 822 LKQQKTKQRMSTCFNKLKES 841
+ K +R S ++L ++
Sbjct: 598 ITLGKNHKRRSESSDELSDA 617
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 453 (164.5 bits), Expect = 3.5e-79, Sum P(2) = 3.5e-79
Identities = 131/434 (30%), Positives = 212/434 (48%)
Query: 952 NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY 1011
+K++ ++++ ++K ++++R+K +L K+ + + ++ K +E E Y
Sbjct: 79 SKFLLTKMEQQQLEEQKKKEKLERKKESL-KVTKGKNSIDASEENTVVMRKKRGREDESY 137
Query: 1012 -LQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDES----DQAKHYLESNE 1066
+ ++ SK +E S+A + E + + S + E +N D + D+ + N
Sbjct: 138 NISEVMSK-EEILSVAKKNKKETENESSCSNL-CVEDLQKNRDSNSIIKDRLSQTVRQNT 195
Query: 1067 KYYL--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKT 1123
K++ + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMGLGKT
Sbjct: 196 KFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKT 255
Query: 1124 VQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLF- 1182
VQ IA I LM + GPF W +E + P I ++Y G +ERR+L
Sbjct: 256 VQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKLVN 314
Query: 1183 ---KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239
K K Q V++T++E M DR L W Y+I+DEGHRIKN C+L +LK
Sbjct: 315 HIHKRKGTLQIHPVVITSFEIAMR--DRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKR 372
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
+ + ++LLLTGTP +F+ + F WF+ S + + D
Sbjct: 373 FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFD--ITSLSETAEDIIAK 430
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 1359
+++ LHQ+L PF+LRRLK V E+P K E +V S Q++ +
Sbjct: 431 EREQN--VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNR-- 486
Query: 1360 SIGNSKGRSVHNSV 1373
+I N G S +V
Sbjct: 487 TITNMFGSSEKETV 500
Score = 433 (157.5 bits), Expect = 3.5e-79, Sum P(2) = 3.5e-79
Identities = 95/228 (41%), Positives = 143/228 (62%)
Query: 1329 NELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
++ P ++E+L+ + + ++ + VE N+ + + + N +M LR CNHPYL +
Sbjct: 522 DDFPNELEKLISQIQPEVDRERAV--VETNI-PVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Query: 1388 LHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+D + + + +V GK +LDR+LP+LK H+VL FS MTR+LD++ DY
Sbjct: 579 Y---PIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYC 635
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
F+ + + RLDG S +R + FN D FIFL+S RAGG+G+NL AADTVII+D+
Sbjct: 636 HFRNFNFSRLDGSMSYTEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+ KL
Sbjct: 695 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
Score = 40 (19.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 17/72 (23%), Positives = 27/72 (37%)
Query: 242 QMEHFSSLSGNMSSILRVKQEGQNVTEKP----LDSANVSNSVPRASNSKFPEEVEVSAS 297
+++H S S L K E Q + E+ L+ S V + NS E
Sbjct: 67 RLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVTKGKNSIDASEENTVVM 126
Query: 298 GQQQGNSLSSAN 309
+++G S N
Sbjct: 127 RKKRGREDESYN 138
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 832 (297.9 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 223/622 (35%), Positives = 327/622 (52%)
Query: 950 GVNKYVKEFHKRKERI-HREKIDRIQREKINLLKINDVEGYLR--MVQDAKSDRVNK--L 1004
G K + K E I +R + R + E ++ K D++ + V+ +DR++K L
Sbjct: 489 GFKKVLNYTKKVTEEIRYRTALSREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDGL 548
Query: 1005 LKETEKYLQKL-GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
+YL K G EA +E ++D +++Y+ + Q K +
Sbjct: 549 GDVVPEYLVKWQGLSYAEAT-----WEKDVDIAFAQVAIDEYK--AREVSIAVQGKMVEQ 601
Query: 1064 SNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKT 1123
K S+++ + EQP L GG LR+YQ+ GL +LV+ + N N ILADEMGLGKT
Sbjct: 602 QRTKGKA---SLRK-LDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKT 657
Query: 1124 VQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR---- 1179
VQ ++++ +L T+ GPF W E W P ++ IVY G R
Sbjct: 658 VQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQ 717
Query: 1180 -RLFKEKIVHQ--KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236
+ EK V + KFN LLTTYE ++ D+ LSKI+W Y+++DE HR+KN+ +L
Sbjct: 718 YEFYNEKKVGRPIKFNALLTTYEVVLK--DKAVLSKIKWIYLMVDEAHRLKNSEAQLYTA 775
Query: 1237 LKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDX 1296
L + + ++LL+TGTP F + ++F + + K S ++
Sbjct: 776 LLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENY-KNLSSFNESE--- 831
Query: 1297 XXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-E 1355
+ LH LRP +LRR+ VE LP KIER++R E S QK K + E
Sbjct: 832 -----------LANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILE 880
Query: 1356 ENLGSIGNS-KGRSVH--NSVMELRNICNHPYL--SQLHAEEVDTLIPKHYLPPIVRLCG 1410
N + +G V N V+EL+ CNHP+L S H D + L I+ G
Sbjct: 881 RNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD-INDNSKLDKIILSSG 939
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
KL +LD+LL +L+ T HRVL FS M R+LD++ +YL+ + +++ RLDG T R +D
Sbjct: 940 KLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMD 999
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
FN S F FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA +RAHRIGQ+ V
Sbjct: 1000 HFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVN 1059
Query: 1531 VLRFETVQTVEEQVRASAEHKL 1552
+ RF T ++VEE++ A+ K+
Sbjct: 1060 IYRFVTSKSVEEEILERAKRKM 1081
Score = 55 (24.4 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 20/100 (20%), Positives = 38/100 (38%)
Query: 138 YYQASGTHRSSQSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
Y ++ H D+E D A+ + + DG AS K +G +P+++
Sbjct: 228 YSDSNHDHNGDADMDYEEEEDEDDPEDADFEPYDAADDGG-ASKKHGQGWDVSDEDPESD 286
Query: 197 NPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNM 236
L +K K+ + S G E+ +F++
Sbjct: 287 EEIDLSDYEDDYGTKKPKVRQQSKGFRKSSAGLERKSFHV 326
Score = 44 (20.5 bits), Expect = 5.2e-78, Sum P(2) = 5.2e-78
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 162 RSANSQSQERQKDGKKA--STKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVD 219
R + +++ Q K+A S D S + +NEN + + ++ +N K + + D
Sbjct: 111 REGSDPAKDSQSGYKEAYHSEDNHSNDRSEKLDSENENDNENEEEDNEMN--KHQSGQAD 168
Query: 220 AP 221
P
Sbjct: 169 VP 170
Score = 40 (19.1 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 182 RKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS 232
R + ++SH +EN + R + + +N+ D G +S +G + +
Sbjct: 5 RNYSNDTVSHNVLDEN----EERQNAATFQSSPLNE-DVDGTYSERGFDMN 50
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 464 (168.4 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 131/434 (30%), Positives = 215/434 (49%)
Query: 952 NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY 1011
+K++ ++++ ++K ++++R+K +L K+ + + ++ R K +E E Y
Sbjct: 79 SKFLLTKMEQQQLEEQKKKEKLERKKESL-KVKKGKNSIDASEEKPVMR-KKRGREDESY 136
Query: 1012 -LQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDES----DQAKHYLESNE 1066
+ ++ SK +E S+A + E ++ + S E +N+D + D+ + N
Sbjct: 137 NISEVMSK-EEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNT 195
Query: 1067 KYYL--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKT 1123
K++ + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMGLGKT
Sbjct: 196 KFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKT 255
Query: 1124 VQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL-- 1181
VQ IA I LM + GPF W +E + P I ++Y G EER++L
Sbjct: 256 VQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR 314
Query: 1182 --FKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239
+K K Q V++T++E M DR L W Y+I+DEGHRIKN C+L +LK
Sbjct: 315 NIYKRKGTLQIHPVVITSFEIAMR--DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR 372
Query: 1240 YQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXX 1299
+ + ++LLLTGTP +F+ + F WF+ S + + D
Sbjct: 373 FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFD--ITSLSETAEDIIAK 430
Query: 1300 XXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 1359
+++ LHQ+L PF+LRRLK V E+P K E +V S Q++ +
Sbjct: 431 EREQN--VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR-- 486
Query: 1360 SIGNSKGRSVHNSV 1373
+I N G S ++
Sbjct: 487 TIANMFGSSEKETI 500
Score = 422 (153.6 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 93/228 (40%), Positives = 141/228 (61%)
Query: 1329 NELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
++ P ++E+L+ + + ++ + VE N+ + + + N +M LR CNHPYL +
Sbjct: 522 DDFPNELEKLISQIQPEVDRERAV--VEVNI-PVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Query: 1388 LHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+D + + + +V GK +LDR+LP+LK H+VL FS MT +LD++ DY
Sbjct: 579 Y---PIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYC 635
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
+ + + RLDG S +R + FN D FIFL+S RAGG+G+NL AADTVII+D+
Sbjct: 636 HLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+ KL
Sbjct: 695 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
Score = 47 (21.6 bits), Expect = 4.0e-79, Sum P(3) = 4.0e-79
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENP 198
+ ++ + Q ++ + + KK S K K+G +SI + E P
Sbjct: 84 TKMEQQQLEEQKKKEKLERKKESLKVKKGKNSI--DASEEKP 123
Score = 40 (19.1 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 369 PSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDG 412
P+ P G GS A + VE QL + T AML + LE G
Sbjct: 2 PAERPAGSGGSEAPAMVE-QL---DTAVITPAMLEEEEQLEAAG 41
Score = 37 (18.1 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 242 QMEHFSSLSGNMSSILRVKQEGQNVTEKP----LDSANVSNSVPRASNSKFPEEVEVSAS 297
+++H S S L K E Q + E+ L+ S V + NS E E
Sbjct: 67 RLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASE-EKPVM 125
Query: 298 GQQQGNSLSSAN 309
+++G S N
Sbjct: 126 RKKRGREDESYN 137
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 797 (285.6 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 235/685 (34%), Positives = 351/685 (51%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+++++ +G+ K ++ F K++E I ++ + ++ E DVE Y Q+ S+ +N
Sbjct: 330 LQQQKVKGLKK-LENFKKKEEEI-KQWLAKVSPE--------DVE-YFNCQQELASE-LN 377
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYE------PAVEN--EDE 1054
K + E+ + ++ +KS A H + + +T S +Y P E EDE
Sbjct: 378 KQYQIVERVIA-----VKTSKSAAGHADFPANSRKTSSNDPEYLCKWMGLPYAECSWEDE 432
Query: 1055 ---SDQAKHYLES----NEKYYLMAHSIKE--------SVSEQPTCL--QGGKLREYQMS 1097
S + +H ++S N + K ++ +QP+ + + +LR+YQ+
Sbjct: 433 ALISKKFQHCIDSFNNRNNSKTIPTRDCKVLKQRPRFVALKKQPSYIGSENLELRDYQLE 492
Query: 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWES 1157
GL WL + + ILADEMGLGKT+Q I+ + YL GPF W+
Sbjct: 493 GLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLSTLTSWQR 552
Query: 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL----LTTYEYLMNKHDRPKLSKI 1213
E WAP I+ +VY G R + + + +H + L L T ++ K D+ L I
Sbjct: 553 EFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNALITTYEILLK-DKAVLGSI 611
Query: 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFN 1273
W ++ +DE HR+KN L L ++S+HRLL+TGTP F
Sbjct: 612 SWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFE 671
Query: 1274 SSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPE 1333
EDF + K E NG S LH+VL PF+LRR+K VE LP
Sbjct: 672 FWEDFEEDHGKGRE-NGYQS-----------------LHKVLEPFLLRRVKKDVEKSLPA 713
Query: 1334 KIERLVRCEASA----YQKLLMKRVEENL--GSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
K+E+++R E SA Y K ++ R + L G+ G++ G N VMEL+ CNH YL +
Sbjct: 714 KVEQILRVEMSALQKQYYKWILTRNYKALSKGTRGSTSG--FLNIVMELKKCCNHCYLIK 771
Query: 1388 LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1447
EE + L ++R GKL +LD+LL +L+ +RVL FS M R+LD++ +YLT
Sbjct: 772 -PPEENERENGIETLQSLIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLT 830
Query: 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507
K Y + RLDG G R +D FN S F FLLS RAGG+G+NL +ADTV+IFD+D
Sbjct: 831 IKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 890
Query: 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI----TAG- 1562
WNPQ DLQAQARAHRIGQK+ V + R T TVEE++ A+ K+ + + I T G
Sbjct: 891 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 950
Query: 1563 -FFDNNTSAED----RREYLESLLR 1582
DNN+ + +E L ++L+
Sbjct: 951 TVLDNNSGRSNSNPFNKEELTAILK 975
Score = 90 (36.7 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 42/180 (23%), Positives = 80/180 (44%)
Query: 41 KSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQV 100
KS G+E S+ S + +G D + S GS+ +S+++ + S S+
Sbjct: 6 KSQGEEGSVHSNASSHSASE--EASGSDSASQSESEQGSEQGSE--SNSSSESSESQSES 61
Query: 101 AGVVKDSKAGLAENEMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSL 159
SK+ E +K +P S + +A +Y G RS++S S ++
Sbjct: 62 ESESTGSKSQQTPPE-TKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNI 119
Query: 160 -DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENP-QQLDSRNSVVNPRKGKMNK 217
D S+ S+++ ++ G+K ++K+ IS E ++E+ Q S S P++ K +
Sbjct: 120 KDEASSESENESPKRRGQKQVKRKKKWKREISGEEEDEDGGDQGTSAESEPEPKRIKAKR 179
Score = 59 (25.8 bits), Expect = 9.8e-76, Sum P(2) = 9.8e-76
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKAST--KRKRGDSSISHEPQNEN 197
+ASG+ +SQS + +++S+S E Q + + ST K ++ +P ++
Sbjct: 26 EASGSDSASQSESEQGSEQGSESNSSSESSESQSESESESTGSKSQQTPPETKEKPASKK 85
Query: 198 PQQLDSRN------SVVNPRKGKMNKVDAPGGFSVKG-AEQSNFNMVPSG-GQME 244
+ D + V R+ ++ + P F++K A + N P GQ +
Sbjct: 86 ERIADVKKMWEEYPDVYGVRRSNRSRQE-PSRFNIKDEASSESENESPKRRGQKQ 139
Score = 48 (22.0 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 580 ADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESAS 624
+ HS E + + E+E S++ +ES + S+ Q ES S
Sbjct: 19 SSHSASEEASGSDSASQSESEQGSEQGSESNSSSESSESQSESES 63
Score = 48 (22.0 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 20/91 (21%), Positives = 41/91 (45%)
Query: 742 VKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEE--DKSLHTDSPPAPKY 799
+KD + + + PK G + + + IS E+DE+ D+ +S P PK
Sbjct: 119 IKDEASS--ESENESPK-RRGQKQVKRKKKWKREIS-GEEEDEDGGDQGTSAESEPEPKR 174
Query: 800 TMSEKWIMDMQKRKLLVEQNWILKQQKTKQR 830
+++ + K V++ L++ K ++R
Sbjct: 175 IKAKRPVQRRTMAKTSVKKPPKLQRGKKRKR 205
Score = 45 (20.9 bits), Expect = 4.4e-74, Sum P(3) = 4.4e-74
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 264 QNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
Q+ +E+ + + SNS +S S+ E E + S QQ
Sbjct: 35 QSESEQGSEQGSESNSSSESSESQSESESESTGSKSQQ 72
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 824 (295.1 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 208/525 (39%), Positives = 289/525 (55%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 866
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 867 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 925
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 926 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 983
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 984 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 1026
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 1027 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1086
Query: 1372 SVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKL 1422
++MELR CNHPYL AEE + T +IP + L +VR GKL ++D+LLPKL
Sbjct: 1087 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1146
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+F
Sbjct: 1147 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1206
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E
Sbjct: 1207 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 1266
Query: 1543 QVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1267 EMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1310
Score = 69 (29.3 bits), Expect = 5.3e-79, Sum P(2) = 5.3e-79
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G +GN+ +D +PP ++ L +S++ E+L + D + P A+ Q T
Sbjct: 56 GDVGNSSASDLVPPPDETAPTELPKESAAPAPESLTLHDYTTQPVSQEQPAQPVLQTPTP 115
Query: 595 --GKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
G L+ +SQE F S S+S+ G
Sbjct: 116 TSGLLQVS-KSQEILSQGNPFMGVSATAVSSSSAG 149
Score = 52 (23.4 bits), Expect = 3.3e-77, Sum P(2) = 3.3e-77
Identities = 21/116 (18%), Positives = 45/116 (38%)
Query: 186 DSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEH 245
D S P+ E ++ ++S ++ K K G KG + N + P G+
Sbjct: 487 DELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLN-TITPVVGKKRK 545
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
++ S N + Q + E + + V R K+ E++++ + ++
Sbjct: 546 RNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKR---KKYTEDLDIKITDDEE 598
Score = 52 (23.4 bits), Expect = 3.3e-77, Sum P(2) = 3.3e-77
Identities = 66/302 (21%), Positives = 124/302 (41%)
Query: 247 SSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
SS++G + + +++ +G T +PL V+ + A+ K ++ + + G S+
Sbjct: 168 SSVTG--AHVAQIQAQGITSTAQPL----VAGT---ANGGKVTFTKVLTGTPLRPGVSIV 218
Query: 307 SANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ-QPTVSSLGANAFGKVHGAM 365
S N VLA++ NQ +R P P ++ P++ + GA + A+
Sbjct: 219 SGNTVLAAKVPGNQATV----QRIVQPSRPVKQLVLQPVKGSAPAGNPGATG-PPLKPAV 273
Query: 366 PIGPSSYPT-GELGSSALSPVESQLFSTNRGDETSAMLSS--GKVLEHDGSSNTLSDANR 422
+ +S PT GE S ++ V Q S +L S GK++ L+ A
Sbjct: 274 TL--TSTPTQGE--SKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKN 329
Query: 423 AVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRN 482
A G+ V T L+ + + V Q P P + + +
Sbjct: 330 AQ--GQPAKVV-TIQLQVQQPQQKIQI-VPQPPASQPQPPPPPSTQPVTLSSVQQAQIMG 385
Query: 483 -GLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS--SAPGVTAPY--GR 537
G P + L + L + + G+ G+ L +KV S+++ + S+P +AP+ G+
Sbjct: 386 PGQSPGQ-RLSVPLKVVLQPQAGSSQGASSGL-SVVKVLSASEVAALSSPASSAPHTGGK 443
Query: 538 LG 539
+G
Sbjct: 444 IG 445
Score = 47 (21.6 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
G+SSG + S+ EV L S P I EE ++L K + E ++ AE+
Sbjct: 411 GASSGLSVVKVLSASEVAALSSPASSAPHTGGKIGMEENRRLEHQKKQ-EKANRIVAEAI 469
Query: 611 AFFTSASQQ 619
A + +Q
Sbjct: 470 ARARARGEQ 478
Score = 41 (19.5 bits), Expect = 4.8e-76, Sum P(2) = 4.8e-76
Identities = 17/85 (20%), Positives = 35/85 (41%)
Query: 181 KRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVK---GAEQSNFNMV 237
++KR S + E P++ + + K K+N + G K ++ S+ ++
Sbjct: 499 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVM 558
Query: 238 PSGGQMEHFSSLSGNMSSILRVKQE 262
P+ E S S +VK++
Sbjct: 559 PAQSPREDEESSIQKRRSNRQVKRK 583
Score = 41 (19.5 bits), Expect = 4.8e-76, Sum P(2) = 4.8e-76
Identities = 30/139 (21%), Positives = 52/139 (37%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 452 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 508
Query: 97 SSQVAGVVKDSK-AGLAENE-MSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDH 153
K SK +G ++ + SK+ T P V + S +QS
Sbjct: 509 ERLKEEKPKKSKTSGTSKTKGKSKLNTIT---PVVGKKRKRNTSSDNSDVEVMPAQSPRE 565
Query: 154 ESPSSLDTRSANSQSQERQ 172
+ SS+ R +N Q + ++
Sbjct: 566 DEESSIQKRRSNRQVKRKK 584
Score = 39 (18.8 bits), Expect = 7.8e-76, Sum P(2) = 7.8e-76
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
S + + +K KK+S +R + + + + + S+ + + P GK K
Sbjct: 491 SVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLNTITPVVGKKRK 545
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 520 (188.1 bits), Expect = 6.2e-79, Sum P(4) = 6.2e-79
Identities = 125/354 (35%), Positives = 192/354 (54%)
Query: 1066 EKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTV 1124
E Y L SI+ QPT G KL+ YQ+ G+ WL +LY +NGILADEMGLGKTV
Sbjct: 493 ESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTV 551
Query: 1125 QVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER---RRL 1181
Q IAL+ +L E +N GPF W E + P+ + Y G P +R RR
Sbjct: 552 QSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF 611
Query: 1182 FKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+ +K ++ + F+V++T+Y+ ++ D +++W Y+++DE +K++S L
Sbjct: 612 WSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILL 669
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+Q +RLLLTGTP +F+S E+F++WF+K ES+ +N
Sbjct: 670 QFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK----- 724
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE--- 1355
++RLH +L+PF+LRR+K VENEL +KIE L+ C+ ++ QKLL + ++
Sbjct: 725 --SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKI 782
Query: 1356 --ENL--GSIGNSKGR-----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400
E+L S+G+++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 783 SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 832
Score = 372 (136.0 bits), Expect = 6.2e-79, Sum P(4) = 6.2e-79
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1101 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1160
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1161 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1219
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1220 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1258
Score = 61 (26.5 bits), Expect = 6.2e-79, Sum P(4) = 6.2e-79
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 330 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 388
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
I E Y + K D + ++E + L+KL
Sbjct: 389 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKL 418
Score = 44 (20.5 bits), Expect = 6.2e-79, Sum P(4) = 6.2e-79
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE--P 193
+ YY A G + F + L + + +++ K K K++R D +S E P
Sbjct: 183 YQYYSA-GLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESP 241
Query: 194 QNENPQ 199
+ + Q
Sbjct: 242 RRHHHQ 247
Score = 41 (19.5 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 940 VFKIKRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDV 986
VF R+RW R ++ + ++ +R HR+ I+ + + L+ D+
Sbjct: 852 VFNHSRDRWLRVLSPFAPDYIQRS-LFHRKGIN--EESCFSFLRFIDI 896
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 824 (295.1 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 208/525 (39%), Positives = 289/525 (55%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 866
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 867 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 925
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 926 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 983
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 984 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 1026
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 1027 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1086
Query: 1372 SVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKL 1422
++MELR CNHPYL AEE + T +IP + L +VR GKL ++D+LLPKL
Sbjct: 1087 TMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 1146
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+F
Sbjct: 1147 KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF 1206
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E
Sbjct: 1207 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 1266
Query: 1543 QVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1267 EMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1310
Score = 68 (29.0 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G +GN+ +D +PP ++ L +S++ E+L + D + P A+ Q T
Sbjct: 56 GDVGNSSASDLVPPPEETTPTELPKESAAPAPESLTLHDYTTQPVSQEQPAQPVLQTPTP 115
Query: 595 --GKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
G L+ +SQE F S S+S+ G
Sbjct: 116 TSGLLQVS-KSQEILSQGNPFMGVSATAVSSSSAG 149
Score = 57 (25.1 bits), Expect = 9.6e-78, Sum P(2) = 9.6e-78
Identities = 34/203 (16%), Positives = 74/203 (36%)
Query: 103 VVKDSKAGL---AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDHESPSS 158
VV +AG A + +S ++ ++S S A + T ++ +H+
Sbjct: 400 VVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSTPHTGGKTGIEENRRLEHQKKQE 459
Query: 159 LDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKV 218
R + G++ + D S P+ E ++ ++S ++ K K
Sbjct: 460 KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKS 519
Query: 219 DAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSN 278
G KG + N + P G+ ++ S N + Q + E + +
Sbjct: 520 KTSGTSKTKGKSKLN-TITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNR 578
Query: 279 SVPRASNSKFPEEVEVSASGQQQ 301
V R K+ E++++ + ++
Sbjct: 579 QVKR---KKYTEDLDIKITDDEE 598
Score = 45 (20.9 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 65/302 (21%), Positives = 123/302 (40%)
Query: 247 SSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
SS++G + + +++ +G T +PL V+ + A+ K ++ + + G S+
Sbjct: 168 SSVTG--AHVAQIQAQGITSTAQPL----VAGT---ANGGKVTFTKVLTGTPLRPGVSIV 218
Query: 307 SANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ-QPTVSSLGANAFGKVHGAM 365
S N VLA++ NQ +R P P ++ P++ + GA + A+
Sbjct: 219 SGNTVLAAKVPGNQATV----QRIVQPSRPVKQLVLQPVKGSAPAGNPGATG-PPLKPAV 273
Query: 366 PIGPSSYPT-GELGSSALSPVESQLFSTNRGDETSAMLSS--GKVLEHDGSSNTLSDANR 422
+ +S PT GE S ++ V Q S +L S GK++ L+ A
Sbjct: 274 TL--TSTPTQGE--SKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKN 329
Query: 423 AVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRN 482
A G+ V T L+ + + V Q P P + + + +
Sbjct: 330 AQ--GQPAKVV-TIQLQVQQPQQKIQI-VPQPPSSQPQPQQPPSTQPVALSSVQQAQIMG 385
Query: 483 -GLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS--SAPGVTAPY--GR 537
G P + L + L + + G+ G+ L +KV S+++ + S+P + P+ G+
Sbjct: 386 PGQGPGQ-RLSVPLKVVLQPQAGSSQGASSGL-SVVKVLSASEVAALSSPASSTPHTGGK 443
Query: 538 LG 539
G
Sbjct: 444 TG 445
Score = 41 (19.5 bits), Expect = 4.7e-76, Sum P(2) = 4.7e-76
Identities = 30/139 (21%), Positives = 52/139 (37%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 452 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 508
Query: 97 SSQVAGVVKDSK-AGLAENE-MSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDH 153
K SK +G ++ + SK+ T P V + S +QS
Sbjct: 509 ERLKEEKPKKSKTSGTSKTKGKSKLNTIT---PVVGKKRKRNTSSDNSDVEVMPAQSPRE 565
Query: 154 ESPSSLDTRSANSQSQERQ 172
+ SS+ R +N Q + ++
Sbjct: 566 DEESSIQKRRSNRQVKRKK 584
Score = 40 (19.1 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
G+SSG + S+ EV L S P EE ++L K + E ++ AE+
Sbjct: 411 GASSGLSVVKVLSASEVAALSSPASSTPHTGGKTGIEENRRLEHQKKQ-EKANRIVAEAI 469
Query: 611 AFFTSASQQ 619
A + +Q
Sbjct: 470 ARARARGEQ 478
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 521 (188.5 bits), Expect = 7.5e-79, Sum P(2) = 7.5e-79
Identities = 151/496 (30%), Positives = 246/496 (49%)
Query: 928 SEIEAHKER-LDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI---DRIQREKINLLKI 983
+E EA ++R LDE + + + R +N + + + R++ D IQ E + L+
Sbjct: 370 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED 429
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
+ ++ R + VN ++ + K L+ A++ A H + E
Sbjct: 430 SSMQ---RQIDIGGGVVVNITQEDYDSNHFK-AQALKNAEN-AYHIHQARTRSFDEDAKE 484
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWL 1102
A+ ++S E Y L SI+ QPT G KL+ YQ+ G+ WL
Sbjct: 485 SRAAALRAANKSGTG-----FGESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWL 538
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
+LY +NGILADEMGLGKTVQ IAL+ +L E +N GPF W E +
Sbjct: 539 ANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRF 598
Query: 1163 APRIHKIVYCGPPEER---RRLFKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWH 1216
P+ + Y G P +R RR + +K ++ + F+V++T+Y+ ++ D +++W
Sbjct: 599 VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQ 656
Query: 1217 YIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
Y+++DE +K++S L +Q +RLLLTGTP +F+S E
Sbjct: 657 YMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHE 716
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
+F++WF+K ES+ +N ++RLH +L+PF+LRR+K VENEL +KIE
Sbjct: 717 EFNEWFSKDIESHAENK-------SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIE 769
Query: 1337 RLVRCEASAYQKLLMKRVE-----ENL--GSIGNSKGR-----SVHNSVMELRNICNHPY 1384
L+ C+ ++ QKLL + ++ E+L S+G+++ S+ N VM+ R +CNHP
Sbjct: 770 ILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPE 829
Query: 1385 LSQLHAEEVDTLIPKH 1400
L E +T P H
Sbjct: 830 LF----ERQETWSPFH 841
Score = 372 (136.0 bits), Expect = 7.5e-79, Sum P(2) = 7.5e-79
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1111 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1170
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1171 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1230 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1268
Score = 62 (26.9 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 30/99 (30%), Positives = 45/99 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 339 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 397
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL-GSKLQ 1020
I E Y + K D + ++E + L+KL S +Q
Sbjct: 398 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKLEDSSMQ 433
Score = 40 (19.1 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 20/91 (21%), Positives = 39/91 (42%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIK 1076
SKL++++ + ++ S E E E ED+ ++ + S E+ + M K
Sbjct: 117 SKLKKSRRWLKSILLSDESSEADSQSEDNEE--EEEDDEEEEEELNLSREELHNMLRLHK 174
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
Q + +L++YQ L+S Y+
Sbjct: 175 YKKLHQNKYSKDKELQQYQYYSAG-LLSTYD 204
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 830 (297.2 bits), Expect = 8.0e-79, Sum P(4) = 8.0e-79
Identities = 199/523 (38%), Positives = 282/523 (53%)
Query: 1041 VVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES-VSEQPTCLQGG-KLREYQMSG 1098
V+ K++ E ++ + +K + ++ + K S + QP L G LR+YQM G
Sbjct: 478 VLRKWQRCAEQFNDRESSK--CTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDG 535
Query: 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESE 1158
L WL+ + + + ILADEMGLGKT+Q I + L + + GPF W+ E
Sbjct: 536 LNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQRE 595
Query: 1159 INFWAPRIHKIVYCGPPEERRRLFK-----EKIVHQKFNVLLTTYEYLMNKHDRPKLSKI 1213
+ WAP ++ + Y G + R + + E KFN +LTTYE ++ D+ L +
Sbjct: 596 FDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLK--DKQFLGTL 653
Query: 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFN 1273
QW +++DE HR+KN L LK + ++HRLL+TGTP F
Sbjct: 654 QWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLH------FI 707
Query: 1274 SSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPE 1333
+ F W N FE N+ D RLHQ L P++LRR+K VE LP
Sbjct: 708 MPDKFDTWEN--FEVQHGNAEDKGYT----------RLHQQLEPYILRRVKKDVEKSLPA 755
Query: 1334 KIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVH---NSVMELRNICNHPYLSQLH 1389
K+E+++R E ++ QK K + +N ++ K S N V+EL+ CNH L +
Sbjct: 756 KVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPS 815
Query: 1390 AEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK 1449
E+ L L +++ GKL +LD+LL +LK T HRVL FS M R+LDV+ DYL +
Sbjct: 816 EFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKR 875
Query: 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWN 1509
+ + RLDG G R +D FN + S F FLLS RAGG+G+NL ADTVIIFD+DWN
Sbjct: 876 HFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWN 935
Query: 1510 PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
PQ DLQAQARAHRIGQK V + R T ++VEEQ+ A+ K+
Sbjct: 936 PQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKM 978
Score = 63 (27.2 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 39/191 (20%), Positives = 72/191 (37%)
Query: 132 SGAGHDYYQASGTH---RSSQSFDHES------PSSLDTRSANSQSQERQKDGKKASTKR 182
SG+ D +SG RSS + +S P + A+S++ D + +S+
Sbjct: 39 SGSDSDSDSSSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQEDSSSDG 98
Query: 183 KRG-DSSISHE-PQNENPQQLDSRN---SVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMV 237
G DS E P ++ Q +++ N S+ P + + + G ++ S
Sbjct: 99 SSGSDSDSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETEAGQQQPASDASADESS 158
Query: 238 PSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSAS 297
S + SS S + + + KP +A S P N K + + S
Sbjct: 159 DSSANVSPTSSSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWDSDESDE 218
Query: 298 GQQQGNSLSSA 308
+ + +S+A
Sbjct: 219 SEDSDDEVSTA 229
Score = 62 (26.9 bits), Expect = 4.1e-78, Sum P(3) = 4.1e-78
Identities = 31/136 (22%), Positives = 50/136 (36%)
Query: 80 TSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY 139
T Q +S A SS A V S + +E E P +R P A
Sbjct: 141 TEAGQQQPASDASADESSDSSANVSPTSSSSSSEEEEEDYRP-KRTRQARKPPTAAEKSK 199
Query: 140 QASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEP-QNEN 197
+A +++D ES S D+ S +Q+R+ + +K + +P +E+
Sbjct: 200 KAPAPKNKKKTWDSDESDESEDSDDEVSTAQKRKPAATTSRSKLAQQQQRRRVKPFSSED 259
Query: 198 PQQLDSRNSVVNPRKG 213
D+ RKG
Sbjct: 260 SDDDDASKRCATRRKG 275
Score = 59 (25.8 bits), Expect = 8.0e-79, Sum P(4) = 8.0e-79
Identities = 34/148 (22%), Positives = 51/148 (34%)
Query: 54 ISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAE 113
+S+A+ N G D + +R G S + +GS S DS +G +
Sbjct: 1 MSQALNESANSIGSDEQ--DDTREEANGTDHSGSGSGSGSSGSDSD-----SDSSSGNSS 53
Query: 114 NEMSKIEPFTSSR-----PPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQS 168
+ S EP S PP A + + S D S S D+ A S
Sbjct: 54 DGRSSPEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQEDSSSDGSSGSDSDS-DAEGPS 112
Query: 169 QERQKDGKKASTKRKRGDSSISHEPQNE 196
+R + A+T + E NE
Sbjct: 113 DQRNQSINNANTSSSLPKPEQNEEEDNE 140
Score = 59 (25.8 bits), Expect = 1.1e-77, Sum P(4) = 1.1e-77
Identities = 37/159 (23%), Positives = 58/159 (36%)
Query: 135 GHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ 194
G D+ SG+ S D +S SS S++ +S +D K S ++ +
Sbjct: 26 GTDH-SGSGSGSGSSGSDSDSDSS-SGNSSDGRSSPEPED-KSLSVAGFPPTAAAAQADS 82
Query: 195 NENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMS 254
N D +S + G + DA G + +N N S + E
Sbjct: 83 KTNGFTDDQEDSSSDGSSGSDSDSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETE 142
Query: 255 SILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE 293
+ + + E SANVS P +S+S EE E
Sbjct: 143 AGQQQPASDASADESSDSSANVS---PTSSSSSSEEEEE 178
Score = 58 (25.5 bits), Expect = 1.0e-78, Sum P(4) = 1.0e-78
Identities = 31/128 (24%), Positives = 51/128 (39%)
Query: 80 TSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGA-GHDY 138
+SG+ S+ + S VAG + A A+ SK FT + + G+ G D
Sbjct: 48 SSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQAD---SKTNGFTDDQEDSSSDGSSGSDS 104
Query: 139 -YQASG-THRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN 195
A G + + +QS ++ + SSL N + + G++ D S S N
Sbjct: 105 DSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETEAGQQQPASDASADES-SDSSAN 163
Query: 196 ENPQQLDS 203
+P S
Sbjct: 164 VSPTSSSS 171
Score = 56 (24.8 bits), Expect = 8.0e-79, Sum P(4) = 8.0e-79
Identities = 30/121 (24%), Positives = 46/121 (38%)
Query: 507 DGSRRELVDTM-KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK 565
D S E D+ V ++ SS+ Y R R+ R PP + A + K
Sbjct: 151 DASADESSDSSANVSPTSSSSSSEEEEEDY-RPKRTRQA-RKPPTAAEKSKKAPAPKNKK 208
Query: 566 EVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESAST 625
+ + D+S D A++RK AT Q Q+ + F + S + AS
Sbjct: 209 KTWDSDESDESEDSDDEVSTAQKRKPAATTSRSKLAQQQQRRRVKPFSSEDSDD-DDASK 267
Query: 626 R 626
R
Sbjct: 268 R 268
Score = 53 (23.7 bits), Expect = 1.7e-78, Sum P(4) = 1.7e-78
Identities = 26/120 (21%), Positives = 45/120 (37%)
Query: 696 PTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQD 755
P Q + + +G Q S S+ D VS T S S +D ++
Sbjct: 131 PEQNEEEDNETEAGQQQPASDASADESSDSSANVSPTSSSSSSEEEEEDYRPKRTRQARK 190
Query: 756 DPKFSDGSRTIPVD-NSVRNGISLTTEQDEE-DKSLHTDSPPAPKYTMSEKWIMDMQKRK 813
P ++ S+ P N + S +++ E+ D + T P T S + Q+R+
Sbjct: 191 PPTAAEKSKKAPAPKNKKKTWDSDESDESEDSDDEVSTAQKRKPAATTSRSKLAQQQQRR 250
Score = 53 (23.7 bits), Expect = 4.8e-77, Sum P(4) = 4.8e-77
Identities = 34/131 (25%), Positives = 57/131 (43%)
Query: 552 SSSGGFLEADSSSKEVENLKMMDKSG-PPADHSIHAEERKQLATGKLE---AEMQSQETA 607
SSSG + SS E E+ K + +G PP + A+ + T E ++ S +
Sbjct: 47 SSSGNSSDG-RSSPEPED-KSLSVAGFPPTAAAAQADSKTNGFTDDQEDSSSDGSSGSDS 104
Query: 608 ESQAFFTS--ASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEIN 665
+S A S +Q + +A+T +L N+ E+ G+ AS ++ +S N
Sbjct: 105 DSDAEGPSDQRNQSINNANTSSSLPKPEQ-NEEEDNETEAGQQQPASDASADESSDSSAN 163
Query: 666 -SWTGIGSQNE 675
S T S +E
Sbjct: 164 VSPTSSSSSSE 174
Score = 51 (23.0 bits), Expect = 5.5e-78, Sum P(4) = 5.5e-78
Identities = 43/169 (25%), Positives = 70/169 (41%)
Query: 140 QASGT-HRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENP 198
+A+GT H S S S S D+ S++ S DG+ +S + + S++ P
Sbjct: 23 EANGTDHSGSGSGSGSSGSDSDSDSSSGNSS----DGR-SSPEPEDKSLSVAGFPPTAAA 77
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
Q DS+ + + + + G S AE PS + + ++ N SS L
Sbjct: 78 AQADSKTNGFTDDQEDSSSDGSSGSDSDSDAEG------PSDQRNQSINN--ANTSSSLP 129
Query: 259 VKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
K E QN E D+ + AS++ E + SA+ +S SS
Sbjct: 130 -KPE-QNEEE---DNETEAGQQQPASDASADESSDSSANVSPTSSSSSS 173
Score = 45 (20.9 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 713 ANSHLSSFSIRDQWKPVSGTDSD-----RYSLIPVKDASGMLRHTSQDDPKFSDGSRTIP 767
+ S L+ R + KP S DSD + K A+ + S+D+ S+
Sbjct: 239 SRSKLAQQQQRRRVKPFSSEDSDDDDASKRCATRRKGAAVSYKEASEDEATDSEDLLEFE 298
Query: 768 VDNSVRNGISLTTEQDEEDKSL 789
D S + T E++E+ +++
Sbjct: 299 YDESQAATTAATAEEEEKCETI 320
Score = 37 (18.1 bits), Expect = 8.0e-79, Sum P(4) = 8.0e-79
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 1503 IFDTDWNPQVDLQAQARAHRIG 1524
+FD DW + D + ++ G
Sbjct: 1319 VFDVDWGIEEDTKLLCGIYQYG 1340
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 823 (294.8 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 226/659 (34%), Positives = 336/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V++ K K RI ++KI R + ++ ++++E L + DR+ + T+ +
Sbjct: 833 VEDLEKDK-RI-QQKIKRFKSKQGQSKFLSEIEDDLFNPDYVEVDRIMDFARSTDDRGEP 890
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E + D QT +E++E + E E+++ + + K
Sbjct: 891 VIHYLVKWCSLPYEDSTWELKQDIDQTK--IEEFEKLMSREPETERVERPPADDWKK--- 945
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 946 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 997
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 998 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1056
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1057 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1114
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1115 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF-------GDLKTEEQ--- 1164
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1165 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1217
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ + P L +++
Sbjct: 1218 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQ 1277
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1278 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1337
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1338 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1397
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1398 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1456
Score = 70 (29.7 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 78/361 (21%), Positives = 127/361 (35%)
Query: 121 PFTSSRPPVAPSGA---GH-DYYQASGTHRSSQSFDHESPSSLDTRSAN-SQSQERQKDG 175
P+ +P APSG GH + Q G++ + F + R SQ QE G
Sbjct: 158 PYQQQQPQPAPSGPPAQGHPQHMQQMGSYLARGDFSMQQHGQPQQRMGQFSQGQEGLSQG 217
Query: 176 KKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFN 235
G +SH PQ ++P S V + + A G SV + + + N
Sbjct: 218 SPFIATS--GPGHLSHMPQ-QSPSMAPSLRHPVQQQFH--HHPAALHGESVAHSPRFSPN 272
Query: 236 MVPSGG---QMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSAN--VSNSVPRASNSKFPE 290
G Q +FSS + + S V GQ + P + N + NS N
Sbjct: 273 PPQQGAVRPQTLNFSSRNQTVPSPT-VNNSGQ-YSRYPYSNLNQGLVNSTGMNQNLGLTN 330
Query: 291 EVEVSASGQQQGNSL----SSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ 346
++ S + N++ +S G++ + + ++ P P P
Sbjct: 331 STPMNQSVPRYPNAVGFPSNSGQGLVHQQPIHSSGSLNQMNTQTMHPSQPQGTYASPPPM 390
Query: 347 QPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSG- 405
P + +N G + G + P E+GS P Q G + G
Sbjct: 391 SPMKAM--SNPAGTPPPQVRPGSAGMPM-EVGSYPNMP-HPQPSHQPPGAMGIGQRNMGP 446
Query: 406 KVLEHDGSSNTLSDANRAVQVG--RQNSVPGTAMLRTMASRDT---GKSSVSQTPVFSGM 460
+ ++ S +S A R + G R N PG + A ++ G+ Q P F +
Sbjct: 447 RNMQQPRSFMGMSSAPREL-TGHMRPNGCPGVGLADPQAIQERLIPGQQHPGQQPSFQQL 505
Query: 461 P 461
P
Sbjct: 506 P 506
Score = 53 (23.7 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 31/152 (20%), Positives = 61/152 (40%)
Query: 750 RHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
R+T + K SD D + R+ S T Q E+ +S+ + P K MS + +
Sbjct: 748 RYTEDLEFKISD-EEADDADAAGRDSPS-NTSQSEQQESVDAEGPVVEKI-MSSRLVKKQ 804
Query: 810 QK--RKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIEXXXXXXXXXX 867
++ ++ VE+ ++ K K F+ L +S ED+ + +
Sbjct: 805 KESGEEVEVEEFYV----KYKN-----FSYLHCQWASVEDLEKDKRIQQKIKRFKSKQGQ 855
Query: 868 XXXXNDFLNDFFKPITTDMDRLKSYKKHRHGR 899
++ +D F P ++DR+ + + R
Sbjct: 856 SKFLSEIEDDLFNPDYVEVDRIMDFARSTDDR 887
Score = 47 (21.6 bits), Expect = 7.1e-76, Sum P(4) = 7.1e-76
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 147 SSQSFDHES-PSSLDTRSANSQSQE-RQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
SS+ F + P ++ + S + Q++ KK + + D S EP+ + +
Sbjct: 604 SSKGFGKDDFPGGVENQELRRNSLDVSQEEKKKKKRPKVKKDPKESKEPKEKKEPKTPKA 663
Query: 205 NSVVNPRKGKMNKVDAP 221
+ K K K P
Sbjct: 664 PKIPKEPKEKKAKTVTP 680
Score = 46 (21.3 bits), Expect = 3.6e-76, Sum P(3) = 3.6e-76
Identities = 62/271 (22%), Positives = 93/271 (34%)
Query: 120 EPFTSSRPPVAPSGAGHDYY--QASGT------HRSSQSFDHESPSSLDTRS-ANS---Q 167
E + P +A SG GH + Q S + H Q F H P++L S A+S
Sbjct: 212 EGLSQGSPFIATSGPGHLSHMPQQSPSMAPSLRHPVQQQFHHH-PAALHGESVAHSPRFS 270
Query: 168 SQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVK 227
Q+ + T + P N Q SR N +G +N +
Sbjct: 271 PNPPQQGAVRPQTLNFSSRNQTVPSPTVNNSGQY-SRYPYSNLNQGLVNSTGMNQNLGLT 329
Query: 228 GAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSV-PRASNS 286
+ N VP F S SG +G V ++P+ S+ N + + +
Sbjct: 330 NSTPMN-QSVPRYPNAVGFPSNSG----------QGL-VHQQPIHSSGSLNQMNTQTMHP 377
Query: 287 KFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ 346
P+ S ++S+ G + AG P E V +P NM P
Sbjct: 378 SQPQGTYASPPPMSPMKAMSNPAGTPPPQV--RPGSAGMPME---VGSYP-NMPHPQPSH 431
Query: 347 QPT-VSSLGANAFGKVHGAMP---IGPSSYP 373
QP +G G + P +G SS P
Sbjct: 432 QPPGAMGIGQRNMGPRNMQQPRSFMGMSSAP 462
Score = 46 (21.3 bits), Expect = 7.1e-76, Sum P(4) = 7.1e-76
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+++ + VT KP S SN P + S ++V G+ +G+ S
Sbjct: 672 EKKAKTVTPKPKSSKKSSNKKPDSEASALKKKVN---KGKTEGSENS 715
Score = 37 (18.1 bits), Expect = 2.6e-75, Sum P(2) = 2.6e-75
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
R ++ E + ++A G S S+ Q+E + +D+ VV
Sbjct: 746 RKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVV 792
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 821 (294.1 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 206/524 (39%), Positives = 288/524 (54%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 866
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 867 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 925
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 926 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 983
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 984 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 1026
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 1027 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1086
Query: 1372 SVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL E++ T +IP + L +VR GKL ++D+LLPKLK
Sbjct: 1087 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 1146
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 1147 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1206
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
L RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E +
Sbjct: 1207 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 1266
Query: 1544 VRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
+ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1267 MFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1309
Score = 69 (29.3 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G +GN+ ++ +PP ++ L +S++ E++ + D + PA A+ Q +T
Sbjct: 56 GDVGNSSASELVPPPEETAPTELSKESTAPAPESITLHDYTTQPASQEQPAQPVLQTSTP 115
Query: 595 --GKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
G L+ +SQE F S S+S+ G
Sbjct: 116 TSGLLQVS-KSQEILSQGNPFMGVSATAVSSSSAG 149
Score = 47 (21.6 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 65/302 (21%), Positives = 124/302 (41%)
Query: 247 SSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
SS++G + + +++ +G T +PL V+ + A+ K ++ + + G S+
Sbjct: 168 SSVTG--AHVAQIQAQGITSTAQPL----VAGT---ANGGKVTFTKVLTGTPLRPGVSIV 218
Query: 307 SANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ-QPTVSSLGANAFGKVHGAM 365
S N VLA++ NQ +R P P ++ P++ + GA + A+
Sbjct: 219 SGNTVLAAKVPGNQAAV----QRIVQPSRPVKQLVLQPVKGSAPAGNPGATG-PPLKPAV 273
Query: 366 PIGPSSYPT-GELGSSALSPVESQLFSTNRGDETSAMLSS--GKVLEHDGSSNTLSDANR 422
+ +S PT GE S ++ V Q S +L S GK++ L+ A
Sbjct: 274 TL--TSTPTQGE--SKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKN 329
Query: 423 AVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRN 482
A G+ V T L+ + + V Q P P + + + +
Sbjct: 330 AQ--GQPAKVV-TIQLQVQQPQQKIQI-VPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMG 385
Query: 483 -GLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS--SAPGVTAPY--GR 537
G P + L + + + + G+ G+ L +KV S+++ + S+P +AP+ G+
Sbjct: 386 PGQSPGQ-RLSVPVKVVLQPQAGSSQGASSGL-SVVKVLSASEVAALSSPASSAPHSGGK 443
Query: 538 LG 539
G
Sbjct: 444 TG 445
Score = 44 (20.5 bits), Expect = 4.9e-76, Sum P(2) = 4.9e-76
Identities = 30/139 (21%), Positives = 52/139 (37%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQ-CAG 95
L+H K K + + + I+RA QN L LP + G+ + AG
Sbjct: 452 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSAG 508
Query: 96 SSSQVAGVVKDSKAGLAENE-MSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDH 153
+ K +G ++ + SK+ T P V + S +QS
Sbjct: 509 ERLKEEKPKKSKTSGASKTKGKSKLNTIT---PVVGKKRKRNTSSDNSDVEVMPAQSPRE 565
Query: 154 ESPSSLDTRSANSQSQERQ 172
+ SS+ R +N Q + ++
Sbjct: 566 DEESSIQKRRSNRQVKRKK 584
Score = 43 (20.2 bits), Expect = 6.2e-76, Sum P(2) = 6.2e-76
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
G+SSG + S+ EV L S P + EE ++L K + E ++ AE+
Sbjct: 411 GASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQ-EKANRIVAEAI 469
Query: 611 AFFTSASQQ 619
A + +Q
Sbjct: 470 ARARARGEQ 478
Score = 42 (19.8 bits), Expect = 7.9e-76, Sum P(2) = 7.9e-76
Identities = 17/85 (20%), Positives = 35/85 (41%)
Query: 181 KRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVK---GAEQSNFNMV 237
++KR S + E P++ + + K K+N + G K ++ S+ ++
Sbjct: 499 EKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVM 558
Query: 238 PSGGQMEHFSSLSGNMSSILRVKQE 262
P+ E S S +VK++
Sbjct: 559 PAQSPREDEESSIQKRRSNRQVKRK 583
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 801 (287.0 bits), Expect = 1.3e-78, P = 1.3e-78
Identities = 205/592 (34%), Positives = 308/592 (52%)
Query: 1018 KLQEAKSMASHFENEMDE----TQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAH 1073
K +E S +E E D Q +++ +K + + + D+ ++ N+KY
Sbjct: 200 KWRELSYNDSSWERESDSIPGLNQAIALYKKLRSSNKGR-QRDRPAPTIDLNKKY----- 253
Query: 1074 SIKESVSEQPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
+QP L+ G KL +Q+ G+ WL + + ILADEMGLGKT+Q + +
Sbjct: 254 ------EDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLY 307
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-- 1189
L + + RGPF WE E+ WAP ++ + Y G R + K +I +
Sbjct: 308 SLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEV 367
Query: 1190 ------------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237
KFNV+LT+YE++ D L I W +++DE HR+++ K L
Sbjct: 368 TTKTMRENQTQYKFNVMLTSYEFI--SVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRIL 425
Query: 1238 KHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXX 1297
Y+ ++LLLTGTP FN + F F D S +
Sbjct: 426 SKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFT-------DVSKEEQ 478
Query: 1298 XXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EE 1356
+ RLH++L P +LRRLK V +P K E +VR E S+ QK K + +
Sbjct: 479 ----------VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTK 528
Query: 1357 NLGSIGNSKGR----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPK--HYLPPIVRLCG 1410
N ++ N KG S+ N +M+LR CNHPYL AEE T+ P + + + + G
Sbjct: 529 NFKAL-NQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEA-TISPSGLYEMSSLTKASG 586
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
KL++L ++L +LKA +HRVL FS MT++L+V+E +L + Y+Y R+DG G R ID
Sbjct: 587 KLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAID 646
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
+FN S F+FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHR+GQK+ V+
Sbjct: 647 RFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVM 706
Query: 1531 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ RF T +VEE++ A+HK+ + + + G T+ ++ LE +LR
Sbjct: 707 IYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFS--KDELEDILR 756
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 829 (296.9 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 199/510 (39%), Positives = 279/510 (54%)
Query: 1077 ESVSEQPTCL-QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
+ + + P +G KLR YQ+ GL WL ++ Q N IL DEMGLGKTVQ ++++ L +
Sbjct: 494 KKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRK 553
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVY----CGPPEERRRLF--KEKIVH- 1188
RGPF W+ E W ++ +VY G P R F K+K
Sbjct: 554 VHGIRGPFLVVAPLTTIPHWKREFENWTD-MNALVYHDSGAGRPICRNYEFYLKDKDGGG 612
Query: 1189 -----------QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237
KFNVL+TTYE + DR LS+I W Y++IDE HR+KN SCKL +L
Sbjct: 613 GGASGGASGKITKFNVLITTYEMAIT--DRTHLSRIPWKYLVIDEAHRLKNKSCKLTIEL 670
Query: 1238 KHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXX 1297
+ Y H LLLTGTP F++ + F + ES+
Sbjct: 671 RSYSFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFSNLDQFLLEYGDLKESSQ------- 723
Query: 1298 XXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EE 1356
+ L +L+P++LRR+K +VE + K E +V E + QK + + E+
Sbjct: 724 ----------VESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEK 773
Query: 1357 NLGSI---GNS-KGRSVHNSVMELRNICNHPYLSQ-LHAEEVDTLIPKHYL-PPIVRLCG 1410
N + G S +G S+ N +MELR CNHPYL++ + E ++ K + +++ G
Sbjct: 774 NFSFLRKGGKSNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQASG 833
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
KL ++D+LLPKLK +H+VL FS M +LD+++DYLT++ Y + R+DG G DR A ID
Sbjct: 834 KLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAID 893
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
+F++ DS F+FLL RAGG+G+NL AADTVIIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 894 RFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVK 953
Query: 1531 VLRFETVQTVEEQVRASAEHKLGVANQSIT 1560
V R T T E + A KLG+ +T
Sbjct: 954 VYRLVTKNTYERLMFDKASKKLGLDRAVLT 983
Score = 69 (29.3 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 18/99 (18%), Positives = 48/99 (48%)
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKD-GKKAS 179
P S+P P G+ +A+ + + ES S ++ S + + +E +++ G +
Sbjct: 199 PKPVSKPVGKPKGSVSK--KAAALAKKKNNVQSESEESEESESESEEDEEEEEEKGANKN 256
Query: 180 TKRKRGDSSISHEPQNE-NPQQLDSRNSVVNPRKGKMNK 217
K+ ++ + E +++ N ++ D N+ ++ +++K
Sbjct: 257 KKKNEKENQVKGEGEDDDNEKEEDGENNTIDESDDEIDK 295
Score = 58 (25.5 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
Identities = 31/115 (26%), Positives = 46/115 (40%)
Query: 973 IQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENE 1032
+ R I LK ++ L D+ SD N K++ K S L S + E
Sbjct: 35 LSRRSIAALKNKEI---LENNNDSDSDNNNNKNKKSTKSKNSKKSNLSGEDSENDDNDVE 91
Query: 1033 MDETQTVSVVEKYEPAVENEDES-DQAKHYLESNEKYYLMAHSI---KESVSEQP 1083
DE + V K E E E+E ++ + +S + L S K SVS+ P
Sbjct: 92 KDENENNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDDLSKKSRGRPKASVSKPP 146
Score = 50 (22.7 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
S + + ++K+ ++ ++ S S E + E ++ ++N N ++ ++ K +
Sbjct: 214 SKKAAALAKKKNNVQSESEESEESESESEEDEEEEEEKGANKNKKKNEKENQV-KGEGED 272
Query: 223 GFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLD 272
+ K + N + S +++ F M I R+K+E EK LD
Sbjct: 273 DDNEKEEDGENNTIDESDDEIDKFKQ----MDPIERIKKEYS--IEKILD 316
Score = 47 (21.6 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
GS ++A ++A N E++ E E E+E A + NEK
Sbjct: 211 GSVSKKAAALAKKKNNVQSESEESEESESESEEDEEEEEEKGANKNKKKNEK 262
Score = 44 (20.5 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKA--STKRKRGDSSISHEPQNEN 197
++ + ++ + S D + ++ + K+ KK+ S + D + + +NEN
Sbjct: 44 KNKEILENNNDSDSDNNNNKNKKSTKSKNSKKSNLSGEDSENDDNDVEKDENEN 97
Score = 42 (19.8 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 20/90 (22%), Positives = 44/90 (48%)
Query: 743 KDASGMLRHTSQDD-PKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTM 801
+D S +L ++Q +F++ + + VR +S+T+ + + DK + + Y++
Sbjct: 399 EDNSDLLVSSTQPSWEEFTEVEKVL----DVRT-VSVTSNKFKADKQ-YLIKWKSISYSL 452
Query: 802 SEKWIMDMQKRKLLVEQNWILKQQKTKQRM 831
S D K L +EQ + L + +K+ +
Sbjct: 453 STWEYQDDFKDDLKIEQYYKLNEMPSKEEL 482
Score = 38 (18.4 bits), Expect = 3.4e-78, Sum P(3) = 3.4e-78
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 1033 MDETQTVSV-VEKY-EPAVENEDESD 1056
M++T++ + ++++ + +ENED SD
Sbjct: 378 MNQTRSSKMRLQRFIQKNIENEDNSD 403
Score = 38 (18.4 bits), Expect = 7.0e-76, Sum P(3) = 7.0e-76
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 743 KDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDK 787
K + + S +D + D + D + N + + E++EE++
Sbjct: 69 KSKNSKKSNLSGEDSENDDND--VEKDENENNDVEMKDEEEEEEE 111
Score = 37 (18.1 bits), Expect = 8.0e-75, Sum P(4) = 8.0e-75
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 409 EHDGSSNTLSDANRAVQVGRQ 429
E DG +NT+ +++ + +Q
Sbjct: 278 EEDGENNTIDESDDEIDKFKQ 298
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 513 (185.6 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 122/354 (34%), Positives = 189/354 (53%)
Query: 1066 EKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTV 1124
E Y L SI+ QPT G KL+ YQ+ G+ WL +LY +NGILADEMGLGKTV
Sbjct: 498 ESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTV 556
Query: 1125 QVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER---RRL 1181
Q IAL+ +L E +N GPF W E + P+ + Y G P +R R+
Sbjct: 557 QSIALLAHLAERENIWGPFLIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKF 616
Query: 1182 FKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+ +K ++ + F+V++T+Y+ ++ D +++W Y+++DE +K++S L
Sbjct: 617 WSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILL 674
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+Q +RLLLTGTP +F+S E+F++WF+K ES+ +N
Sbjct: 675 QFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK----- 729
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL 1358
++RLH +L+PF+LRR+K VENEL +KIE L+ C+ ++ QKLL + ++ +
Sbjct: 730 --SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNKI 787
Query: 1359 G-------SIGNSKGR-----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400
S+G ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 788 SIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 837
Score = 375 (137.1 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1109 GKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1168
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1169 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1227
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1228 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1266
Score = 60 (26.2 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 335 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 393
Query: 983 INDVEGYLRMV---QDAKSDRVNK-LLKETE 1009
I E Y + +D D + + +L++ E
Sbjct: 394 ITQTELYAHFMSRKRDIGHDGIQEEILRKLE 424
Score = 46 (21.3 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 18/85 (21%), Positives = 37/85 (43%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE--P 193
+ YY A G + + + L + + +++ K K K++R D +S E P
Sbjct: 188 YQYYSA-GLLSTYDPYYEQQRHLLGPKKKKFKEEKKLKGKLKKVKKKRRRDEDLSSEESP 246
Query: 194 QNENPQ-QLDSRNSVVNPRKGKMNK 217
++ + Q ++ ++ S P G K
Sbjct: 247 EHHHHQTKVFAKFSHDTPPPGSKKK 271
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 820 (293.7 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 205/524 (39%), Positives = 287/524 (54%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 866
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 867 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 925
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 926 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 983
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 984 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 1026
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 1027 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1086
Query: 1372 SVMELRNICNHPYLSQ-------LHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL + E +IP+ + L +VR GKL ++D+LLPKLK
Sbjct: 1087 TMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLK 1146
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 1147 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1206
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
L RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E +
Sbjct: 1207 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 1266
Query: 1544 VRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
+ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1267 MFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1309
Score = 69 (29.3 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 25/95 (26%), Positives = 41/95 (43%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G +GN+ +D +PP ++ L +S++ E+L + D + P A+ Q +T
Sbjct: 56 GDVGNSSASDLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTP 115
Query: 595 --GKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
G L+ +SQE F S S S G
Sbjct: 116 TSGLLQVS-KSQEILSQGNPFMGVSATAVSPSNTG 149
Score = 43 (20.2 bits), Expect = 7.9e-76, Sum P(2) = 7.9e-76
Identities = 29/137 (21%), Positives = 48/137 (35%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 452 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 508
Query: 97 SSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDHES 155
K SK A K + T + P V + S +QS +
Sbjct: 509 ERLKEEKPKKSKTAAASKTKGKSKLNTIT-PVVGKKRKRNTSSDNSDVEVMPAQSPREDE 567
Query: 156 PSSLDTRSANSQSQERQ 172
SS+ R +N Q + ++
Sbjct: 568 ESSIQKRRSNRQVKRKK 584
Score = 43 (20.2 bits), Expect = 7.9e-76, Sum P(2) = 7.9e-76
Identities = 66/302 (21%), Positives = 121/302 (40%)
Query: 247 SSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
SS++G + + +++ +G T +PL V+ + A+ K ++ + + G S+
Sbjct: 168 SSVTG--AHVAQIQAQGITSTAQPL----VAGT---ANGGKVTFTKVLTGTPLRPGVSIV 218
Query: 307 SANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQ-QPTVSSLGANAFGKVHGAM 365
S N VLA++ NQ +R P P ++ P++ + GA + A+
Sbjct: 219 SGNTVLATKVPGNQAAV----QRIVQPSRPVKQLVLQPVKGSAPAGNPGATG-PPLKPAV 273
Query: 366 PIGPSSYPT-GELGSSALSPVESQLFSTNRGDETSAMLSS--GKVLEHDGSSNTLSDANR 422
+ +S P GE S ++ V Q S +L S GK++ L+ A
Sbjct: 274 TL--TSTPAQGE--SKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKS 329
Query: 423 AVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRN 482
A G+ V T L+ + + V Q P P + L +
Sbjct: 330 AQ--GQPAKVV-TIQLQVQQPQQKIQI-VPQPPSSQPQPQPPPSAQPLTLSSVQQAQIMG 385
Query: 483 -GLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS--SAPGVTAPY--GR 537
G P + L + L + + G+ G+ L +KV S+++ + S+P AP+ G+
Sbjct: 386 PGQNPGQ-RLSVPLKMVLQPQAGSSQGASSGL-SVVKVLSASEVAALSSPASCAPHTAGK 443
Query: 538 LG 539
G
Sbjct: 444 TG 445
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 833 (298.3 bits), Expect = 1.5e-78, Sum P(4) = 1.5e-78
Identities = 207/539 (38%), Positives = 295/539 (54%)
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
A S + + E G +LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IAL+
Sbjct: 828 AASAWKKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLS 887
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEK 1185
+ + PF WE E + W ++ IVY G R+ + K+
Sbjct: 888 EMFSA-GVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQYEMYCKDD 945
Query: 1186 IVH-----QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
H KF+ L+TT+E +++ D P+L +I W ++IDE HR+KN +CKL LK
Sbjct: 946 KGHLIPGAYKFDALITTFEMILS--DCPELREISWRCVVIDEAHRLKNRNCKLLDSLKML 1003
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
+ H++LLTGTP F S +F + F GD +
Sbjct: 1004 EIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREF-------GDLKTEEQ--- 1053
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EEN-- 1357
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E N
Sbjct: 1054 -------VQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFS 1106
Query: 1358 ---LGSIGNSKGRSVHNSVMELRNICNHPYL-----SQLHAE--EV-DTLIPKHYLPPIV 1406
+G+ NS ++ N++MELR CNHPYL ++ +E EV D L P +L +V
Sbjct: 1107 FLSMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALV 1166
Query: 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466
R GKL +LD+LLP+LKA H+VL FS M R LD++EDYL K+Y Y R+DG G R
Sbjct: 1167 RSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQ 1226
Query: 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526
A ID+F++ DS F+FLL RAGG+G+NL AADT +IFD+DWNPQ DLQAQAR HRIGQ
Sbjct: 1227 AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQS 1286
Query: 1527 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR--REYLESLLRE 1583
+ V V R T + E ++ A KLG+ ++++ N S+ + ++ +E LLR+
Sbjct: 1287 KAVKVYRLITRNSYEREMLDKASLKLGL-DRAVLQSMSGNKESSIQQFSKKEIEDLLRK 1344
Score = 62 (26.9 bits), Expect = 7.2e-78, Sum P(3) = 7.2e-78
Identities = 54/205 (26%), Positives = 81/205 (39%)
Query: 286 SKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPM 345
S+ P EV V+++ SLS A+ + + G P +QV I
Sbjct: 86 SQIPHEVSVASAPISIQPSLSVASNSSGAATVLLSSSLGVPVSGAQVTPQQQTQQITAVT 145
Query: 346 QQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETS---AML 402
QQ + G +A V P G + G G++ SP + L G A++
Sbjct: 146 QQ----AAGQHAPKIVILKGPQGQTQVLQGVTGATG-SPGKVTLARVLTGTPLRPGMAVV 200
Query: 403 SSGKVLEH----DGSSNTLSDANRAVQV--GRQNSVPGTAMLRTMASRDTGKSSVSQTPV 456
S G VL G + R VQ G V T++ +T + T V Q PV
Sbjct: 201 SGGTVLNATSPAQGQVKVGTGVQRLVQTANGPMKQVLLTSVPQTQSQVQTQPVQV-QIPV 259
Query: 457 FSGM--PFKEQQLK-QLRAQCLVFL 478
+ + P + QQL+ Q++AQ V L
Sbjct: 260 QTQLQSPSQPQQLQAQIQAQTQVAL 284
Score = 61 (26.5 bits), Expect = 1.5e-78, Sum P(4) = 1.5e-78
Identities = 49/209 (23%), Positives = 85/209 (40%)
Query: 414 SNTLSDANRAVQVGR--QNSVPGTAMLRTMASRDTG-KSSVSQTPVFSGMPF-KEQQLKQ 469
SNT+S A AV V + S G+ T + +G + + Q PV K+++ +
Sbjct: 407 SNTVSSAGGAVSVVKVINTSAAGSTSGTTTTAASSGVRLAKIQEPVRRVETLCKQEKANR 466
Query: 470 LRAQCLVFLAFRNGL-VPKKLHL-EIALGNIFPR-EG-GNVDGSRREL---VDTMKVQSS 522
+ A+ + R +P+ L+ E+ G EG G G++++ V S
Sbjct: 467 IVAEAIARAKARGERNIPRVLNQDELPAGQTSADLEGAGGATGAKKKGGGGVGGGGGGSK 526
Query: 523 NDPSSAPGVTAPYGRLGNAR-ETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPAD 581
SA G G ++ +T IP GGS S ++ + + + K P +D
Sbjct: 527 KKSPSAGGAKMVVGGDKKSKAKTPVIPGGGSKS----KSKTKLNTITLVGKKRKRNPSSD 582
Query: 582 HSIHAEERKQLATGKLEAEMQSQETAESQ 610
HS + ++ LE EM + + Q
Sbjct: 583 HS-DVDLSPPVSPRTLEEEMSQKRRSNRQ 610
Score = 56 (24.8 bits), Expect = 1.5e-78, Sum P(4) = 1.5e-78
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 18 LIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQV--------ISRAMETVINQNGLDM 69
++ D +PA + T + V LQ++++ + +P++V I ++ N +G
Sbjct: 58 ILSDVVTDPALIPTPVSVPLQNLQTQ-QLSQIPHEVSVASAPISIQPSLSVASNSSGAAT 116
Query: 70 EALKSSRLPLTSGSQIG-DSSTAQCAGSSSQVAG 102
L SS SG+Q+ T Q + Q AG
Sbjct: 117 VLLSSSLGVPVSGAQVTPQQQTQQITAVTQQAAG 150
Score = 42 (19.8 bits), Expect = 1.5e-76, Sum P(4) = 1.5e-76
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 299 QQQGNSLSSANGVLASRGTWNQNRAG 324
Q Q N++SSA G ++ N + AG
Sbjct: 404 QPQSNTVSSAGGAVSVVKVINTSAAG 429
Score = 39 (18.8 bits), Expect = 1.5e-78, Sum P(4) = 1.5e-78
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 776 ISLTTEQDEEDKSLHTDSPPAP 797
I +T ++DE D + + P P
Sbjct: 622 IKITDDEDELDADVDVTTTPMP 643
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 495 (179.3 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 147/486 (30%), Positives = 237/486 (48%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL----RMVQDAKSD 999
+R+ R K E KR E RE +R Q+ K+N L I+ E Y R + A +
Sbjct: 644 ERDLRRLAEKQELESAKRAEA-EREA-NR-QKRKLNFL-ISQTELYSHFIGRKIPGAGGE 699
Query: 1000 RVNKLLKETEKY--LQKLGSKLQEAKSMASHFENEMDETQTV-----SVVEK-YEPAVEN 1051
+ ++ TE G+K+ + + E++ Q S V+K E A
Sbjct: 700 SGDAGVQGTEAMDLTPGAGAKVTNFEDLDFDAEDDTALRQAAMANAQSAVQKAQERARAF 759
Query: 1052 EDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLN 1111
+D + ++ +E + S+ + QPT L KL+EYQ+ GL WLV+LY +N
Sbjct: 760 DDPNKSTMDTMDDSELNFQNPTSLGDIEISQPTMLTA-KLKEYQLKGLNWLVNLYEQGIN 818
Query: 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVY 1171
GILADEMGLGKT+Q I+++ YL E N GPF W+ EI + P I + Y
Sbjct: 819 GILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPY 878
Query: 1172 CGPPEERR--RLF--KEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224
G ++R+ R F ++ I + K F+VL+T+Y+ ++ D K++W Y+I+DE
Sbjct: 879 WGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVL--DAQYFQKVKWQYMILDEAQ 936
Query: 1225 RIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNK 1284
IK++ L + +RLLLTGTP +F+S ++FS+WF+K
Sbjct: 937 AIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSK 996
Query: 1285 PFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEAS 1344
ES+ ++ + RLH +L+PF+LRR+K V+ EL +K+E+ V C+ +
Sbjct: 997 DIESHAQSNTKLNEDQ-------LRRLHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLT 1049
Query: 1345 AYQKLLMKRVEENLG--------SIGN-SKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395
Q+ L + + ++G+ + ++ N VM+ R +CNHP L + AE
Sbjct: 1050 YRQRALYTNLRNRVSIMDLIEKAAVGDETDSTTLMNLVMQFRKVCNHPDLFE-RAETKSP 1108
Query: 1396 LIPKHY 1401
H+
Sbjct: 1109 FSLAHF 1114
Score = 399 (145.5 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 86/168 (51%), Positives = 108/168 (64%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LKA HRVL + MTR++D+ME+YLT++ Y+Y RLDG T DR +
Sbjct: 1321 GKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTV 1380
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F QQ F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA RAHR+GQ R V
Sbjct: 1381 ADF-QQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1439
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSIT---AGFFDNNTSAEDRR 1574
V R T T+EE++R A K V I+ AG D NT D +
Sbjct: 1440 TVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSK 1487
Score = 63 (27.2 bits), Expect = 5.0e-33, Sum P(3) = 5.0e-33
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 947 RWRG-VNKYVKEFHKRKERIHREKID---RIQREKINLLKI---NDVEGYLRMVQDAKSD 999
+W+ NK +K+ R +R RE + R +RE+ +L ++ ++E R + +++
Sbjct: 610 KWQERTNKSMKDTQARAKRTMREMMSFWKRNEREERDLRRLAEKQELESAKRAEAEREAN 669
Query: 1000 R----VNKLLKETEKYLQKLGSKLQEA 1022
R +N L+ +TE Y +G K+ A
Sbjct: 670 RQKRKLNFLISQTELYSHFIGRKIPGA 696
Score = 63 (27.2 bits), Expect = 5.0e-33, Sum P(3) = 5.0e-33
Identities = 32/142 (22%), Positives = 67/142 (47%)
Query: 949 RGVNKYVKEFHK---RKE--RIHREKIDRIQREKINLLKINDVEGYLRMVQDAK-SDRVN 1002
+G N+ ++ + RK+ +++R K++ + + NL K L Q K +R N
Sbjct: 561 KGYNQIYEQIWRDIARKDIPKVYRTKVNSLSTRQENLRKT----AQLASKQSRKWQERTN 616
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPA--VENEDESDQAK- 1059
K +K+T+ ++ ++E S E E + + ++ ++ E A E E E+++ K
Sbjct: 617 KSMKDTQARAKRT---MREMMSFWKRNEREERDLRRLAEKQELESAKRAEAEREANRQKR 673
Query: 1060 --HYLESNEKYYLMAHSIKESV 1079
++L S + Y +H I +
Sbjct: 674 KLNFLISQTELY--SHFIGRKI 693
Score = 55 (24.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1033 MDETQTVSVVEKYEPAVENEDESD-QAKHYLESNEKYYL 1070
M E +T +V KY ++N ++SD +A + + E+Y L
Sbjct: 289 MSEKET-EMVNKYMVEIDNAEKSDVEAPGFEQERERYIL 326
Score = 55 (24.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 27/116 (23%), Positives = 51/116 (43%)
Query: 951 VNKYVKEF-HKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETE 1009
VNKY+ E + K + ++ +RE+ +LK G R + +++ + + + +
Sbjct: 297 VNKYMVEIDNAEKSDVEAPGFEQ-ERERY-ILK-----GKKRALDVERAESIRRKRRRHD 349
Query: 1010 KYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESD-QAKHYLES 1064
YL KLG ++ + +E +S V+ E E E + D Q K E+
Sbjct: 350 -YLLKLGKSFEKQANAGMDRFRYANEASVISEVQAKEIQDEKERKKDMQRKRRREN 404
Score = 51 (23.0 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 558 LEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSAS 617
++A E E K M + ++++ E +K+L +L+A ++Q++AE F A
Sbjct: 381 VQAKEIQDEKERKKDMQRKRR-RENTVRMEMQKKLEA-ELKAN-ETQDSAEKAKFLREAE 437
Query: 618 Q-QLESASTRGTL-AITNP 634
+ Q + +T+ L +T P
Sbjct: 438 RAQRKIKTTKRALEGVTEP 456
Score = 42 (19.8 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 956 KEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
KE KER + R + + + +E L+ + S K L+E E+ +K+
Sbjct: 384 KEIQDEKERKKDMQRKRRRENTVRMEMQKKLEAELKANETQDSAEKAKFLREAERAQRKI 443
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 820 (293.7 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 205/524 (39%), Positives = 287/524 (54%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 812 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 868
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 869 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 927
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 928 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 985
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 986 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 1028
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 1029 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 1088
Query: 1372 SVMELRNICNHPYLSQ-------LHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL + E +IP+ + L +VR GKL ++D+LLPKLK
Sbjct: 1089 TMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLK 1148
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 1149 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1208
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
L RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E +
Sbjct: 1209 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 1268
Query: 1544 VRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
+ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1269 MFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1311
Score = 68 (29.0 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 20/95 (21%), Positives = 43/95 (45%)
Query: 536 GRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT- 594
G +GN+ +D +PP ++ L +S++ E+L + D + P A+ Q +T
Sbjct: 56 GDVGNSSASDLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTP 115
Query: 595 --GKLEAEMQSQETAESQAFFTSASQQLESASTRG 627
G L+ + ++ F ++ + ++T G
Sbjct: 116 TAGLLQVSKSQEILSQGNPFMGVSATGVSPSNTGG 150
Score = 51 (23.0 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 69/305 (22%), Positives = 126/305 (41%)
Query: 247 SSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
SS++G + + +++ +G T +PL V+ + A+ K ++ + + G S+
Sbjct: 168 SSVTG--THVAQIQAQGITSTAQPL----VAGT---ANGGKVTFTKVLTGTPLRPGVSIV 218
Query: 307 SANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMP 366
S N VLA++ NQ +R P P ++ P++ + A + A+
Sbjct: 219 SGNTVLATKVPGNQAAV----QRIVQPSRPVKQLVLQPVKGSAPAGNPGAAGPPLKPAVT 274
Query: 367 IGPSSYPT-GELGSSALSPVESQLFSTNRGDETSAMLSS--GKVLEHDGSSNTLSDANRA 423
+ +S PT GE S ++ V Q S +L S GK++ L+ A A
Sbjct: 275 L--TSTPTQGE--SKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKNA 330
Query: 424 VQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNG 483
G+ V T L+ + + V Q P S P + Q AQ L + +
Sbjct: 331 Q--GQPAKVV-TIQLQVQQPQQKIQI-VPQPP--SSQPQPQPQPPP-SAQPLTLSSVQQA 383
Query: 484 LV--PKK---LHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPS--SAPGVTAPY- 535
+ P + L + L + + G+ G+ L +KV S+++ + S+P AP+
Sbjct: 384 QIMGPGQNPGQRLSVPLKMVLQPQAGSSQGASSGL-SVVKVLSASEVAALSSPASCAPHT 442
Query: 536 -GRLG 539
G+ G
Sbjct: 443 AGKTG 447
Score = 43 (20.2 bits), Expect = 8.0e-76, Sum P(2) = 8.0e-76
Identities = 29/137 (21%), Positives = 48/137 (35%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 454 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 510
Query: 97 SSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDHES 155
K SK A K + T + P V + S +QS +
Sbjct: 511 ERLKEEKPKKSKTAAASKTKGKSKLNTIT-PVVGKKRKRNTSSDNSDVEVMPAQSPREDE 569
Query: 156 PSSLDTRSANSQSQERQ 172
SS+ R +N Q + ++
Sbjct: 570 ESSIQKRRSNRQVKRKK 586
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 812 (290.9 bits), Expect = 2.0e-78, Sum P(2) = 2.0e-78
Identities = 210/631 (33%), Positives = 326/631 (51%)
Query: 938 DEVFKIKRERWRGVNKYVKEFHKRKERIHR--EKIDRIQREKINLLK--INDVEGYLRMV 993
+ V + +++ +G+ K ++ F K+ E ++ +K E N + ND+ +++
Sbjct: 331 ESVDSLTQQKVKGMKK-LENFKKKNEELNAWLKKASPEDLEYYNCQQELTNDLSKQFQII 389
Query: 994 QDAKSDRVNK--LLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
+ + R K +T + G K M + E + + +K++ +++
Sbjct: 390 ERVIATRTGKSQATSDTPSHKSSSGEPEYLCKWMGLPYA-ECTWEDSALIKKKFQACIDS 448
Query: 1052 EDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCL--QGGKLREYQMSGLRWLVSLYNNQ 1109
+ +K + S + L + +QP+ + + +LR+YQ+ G+ WL +
Sbjct: 449 FHNRNSSKT-VPSKDCKVLKQRPRFVPLKKQPSYIGDENLELRDYQLDGVNWLAHSWCRC 507
Query: 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKI 1169
+ ILADEMGLGKT+Q I+ + YL GPF W+ E + WAP ++ +
Sbjct: 508 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPLSTLTSWQREFDTWAPDMNVV 567
Query: 1170 VYCGPPEERRRLFKEKIVHQKFNVL----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHR 1225
VY G R+ + + ++ + + L T ++ K D+ L I W ++ +DE HR
Sbjct: 568 VYLGDVTSRKTIRDYEWINPQTKRIKFNALLTTYEILLK-DKGVLGNINWAFLGVDEAHR 626
Query: 1226 IKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKP 1285
+KN L L ++S+HRLL+TGTP F S EDF K
Sbjct: 627 LKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLMSDKFESWEDFEDEHGKG 686
Query: 1286 FESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA 1345
NG S LH+VL PF+LRR+K VE LP K+E+++R + SA
Sbjct: 687 -RDNGYQS-----------------LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSA 728
Query: 1346 YQKLLMKRV-EENLGSIGN-SKGRSVH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401
QK K + N ++ ++G S N VMEL+ CNH +L + E+ + P+ +
Sbjct: 729 QQKQFYKWILTRNFKALSKGTRGSSSGFLNIVMELKKCCNHAFLIK-QPEDGENDAPQEH 787
Query: 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 1461
L +VR GKL +LD+LL +LK +RVL FS M R+LD++ DYL+ K+Y++ RLDG
Sbjct: 788 LQSLVRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIK 847
Query: 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 1521
G R +D FN + S F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAH
Sbjct: 848 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 907
Query: 1522 RIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
RIGQK+ V + R T TVEE + A+ K+
Sbjct: 908 RIGQKKQVNIYRLVTKGTVEEDIIERAKKKM 938
Score = 70 (29.7 bits), Expect = 2.0e-78, Sum P(2) = 2.0e-78
Identities = 34/161 (21%), Positives = 68/161 (42%)
Query: 63 NQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSS-QVAGVVKDSKAGLAENEMSKIEP 121
++ G + + S TS S+ S ++ GS S Q + VKD +N ++ ++
Sbjct: 41 SEQGSEKAQSRHSESNSTSDSESHSESGSESNGSKSHQSSAQVKDKPVRKKDN-LADVKK 99
Query: 122 FTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTK 181
P D Y G RSS+S + P+ L+ + S E + +K+S +
Sbjct: 100 MWEEHP---------DVY---GVRRSSRS--RQEPARLNIGAEGSSDSEGESSKRKSSRQ 145
Query: 182 RKRGDSSISHEPQNENP--QQLDSRNSVVNPRKGKMNKVDA 220
+K+ ++ + +E ++ S S +K + ++ A
Sbjct: 146 KKKENTWKDDDSNDEEDVEEETSSSESEQEEKKVRSRRLPA 186
Score = 57 (25.1 bits), Expect = 4.6e-77, Sum P(2) = 4.6e-77
Identities = 36/178 (20%), Positives = 68/178 (38%)
Query: 117 SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
SK + S A S + + SG+ SQS + +R + S S D +
Sbjct: 6 SKKQEDEGSTQSNASSNSASEESNRSGSESGSQSESEQGSEKAQSRHSESNSTS---DSE 62
Query: 177 KASTKRKRGDSSISHEPQNE-NPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFN 235
S + S SH+ + + + ++++ + +K M + + P + V+ + +S
Sbjct: 63 SHSESGSESNGSKSHQSSAQVKDKPVRKKDNLADVKK--MWE-EHPDVYGVRRSSRSRQE 119
Query: 236 MVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE 293
E S G S +Q+ + T K D +N V ++S E+ E
Sbjct: 120 PARLNIGAEGSSDSEGESSKRKSSRQKKKENTWKD-DDSNDEEDVEEETSSSESEQEE 176
Score = 42 (19.8 bits), Expect = 1.8e-75, Sum P(2) = 1.8e-75
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 379 SSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNS 431
SS + ES + G ++ + S K SN+ SD+ + G +++
Sbjct: 20 SSNSASEESNRSGSESGSQSESEQGSEKAQSRHSESNSTSDSESHSESGSESN 72
Score = 40 (19.1 bits), Expect = 2.9e-75, Sum P(2) = 2.9e-75
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
SA+ QSQ+ +K K+ S+ D + + + P++ R +
Sbjct: 194 SASKQSQKGRKQRKQESSDEDDDDDD---DDEEDTPKRQTRRRA 234
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 508 (183.9 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 145/442 (32%), Positives = 219/442 (49%)
Query: 933 HKERLDEVF-KIKRERWRGVNKYVK-EFHKRKERIHREK-IDRIQREKINLLKINDVEGY 989
H EVF I E+ + + + E K++E+ +E+ D + + + + G
Sbjct: 47 HLLNTSEVFVAIMAEKMKKQQEEARLEAAKKQEQQQKEQQADTSEESRKASAQPTERRGT 106
Query: 990 ---LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ-EAKSMASHFEN---EMDETQTVSVV 1042
R A++ N+ +E K + G K + +++++F+ +DE + +V
Sbjct: 107 RASTRQAAAAEATDNNEKKEEPAKSKRGRGRKAPAKGNTISNYFKKADLNVDEAKNTTVQ 166
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWL 1102
E E A DE + L E L+A ++QP + GGK+R+YQ+ GL WL
Sbjct: 167 EALEHAA---DEFEAKPTVLGEQE---LVA-------TQQPAPVTGGKMRKYQLEGLEWL 213
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
SL+ N L GILADEMGLGKTVQ I+LI + E N GPF W E W
Sbjct: 214 KSLWMNGLCGILADEMGLGKTVQAISLIAFFKE-HNVSGPFLISAPLSTVSNWVDEFARW 272
Query: 1163 APRIHKIVYCGPPEERRRLFKE--KIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHY 1217
P I ++Y G +ER +L K+ + QK F V+ T+YE MN DR L++ QW Y
Sbjct: 273 TPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVVCTSYEICMN--DRKFLAQYQWRY 330
Query: 1218 IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 1277
II+DEGHR+KN +C+L +L Y S++RLL+TGTP IFN
Sbjct: 331 IIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIFNDLNS 390
Query: 1278 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337
F WF+ F S DN+ +++ +H +L+PF+LRR+K VE+ LP+K E
Sbjct: 391 FQNWFD--FSSVLDNNGQTDMIERRKRT-LVSTMHSILKPFLLRRVKTDVESALPKKREY 447
Query: 1338 LVRCEASAYQKLLMKRVEENLG 1359
++ + QK L + + G
Sbjct: 448 ILYAPLTLEQKDLYREILNGTG 469
Score = 373 (136.4 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 92/225 (40%), Positives = 126/225 (56%)
Query: 1367 RSVHNSVMELRNICNHPY-LSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
+ + N VM+ R CN P+ AE+ P +V GK+ +LDRL+P L
Sbjct: 587 KKMQNPVMQARLACNSPHNFYWPWAED-----PSSIDETLVTASGKMLLLDRLIPCLLNK 641
Query: 1426 DHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484
H++L FS LD+++D+ T + + R+DG S DR A I FN D + IFLL
Sbjct: 642 GHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNT-DKDYKIFLL 700
Query: 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544
S RAGG G+NL AADTVI+FD+DWNPQ DLQAQ RAHRIGQ + V+V R T TVE+ +
Sbjct: 701 STRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTL 760
Query: 1545 RASAEHKLGVANQSITAGFFDNNTSAEDR-REYLESLLRECKKEE 1588
A+ K + I G F + S R+ ++ L R ++E
Sbjct: 761 LEKADSKRRLERLVIQKGKFKSLLSESTMSRDDVDELKRALGEDE 805
Score = 62 (26.9 bits), Expect = 5.6e-32, Sum P(3) = 5.6e-32
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
+ Q + ++ +S ++R A++Q ER+ G +AST++ + + + E P +
Sbjct: 78 QEQQQKEQQADTSEESRKASAQPTERR--GTRASTRQAAAAEATDNNEKKEEPAKSKRGR 135
Query: 206 SVVNPRKG 213
P KG
Sbjct: 136 GRKAPAKG 143
Score = 60 (26.2 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 561 DSSSKEVENLKMMDKSGPPADHSIHAEE----------RKQLATGKLEA-EMQSQETAES 609
D S+ VEN + MD H ++ E +KQ +LEA + Q Q+ E
Sbjct: 26 DGQSEAVENEEDMDVKTKALMHLLNTSEVFVAIMAEKMKKQQEEARLEAAKKQEQQQKEQ 85
Query: 610 QAFFTSASQQLESAST--RGTLAIT 632
QA + S++ + T RGT A T
Sbjct: 86 QADTSEESRKASAQPTERRGTRAST 110
Score = 57 (25.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 1024 SMASHFENEMDETQTVSVVEKYEPAVENEDESD-QAK---HYLESNEKYY-LMAHSIKES 1078
S+A E+ ET+T + + AVENE++ D + K H L ++E + +MA +K+
Sbjct: 9 SVADVNEDVKMETETGN--DGQSEAVENEEDMDVKTKALMHLLNTSEVFVAIMAEKMKKQ 66
Query: 1079 VSEQPTCLQGGKLREYQ 1095
E L+ K +E Q
Sbjct: 67 QEEAR--LEAAKKQEQQ 81
Score = 55 (24.4 bits), Expect = 5.6e-32, Sum P(3) = 5.6e-32
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 391 STNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGT 435
+T R + M+S + L+ SS+ +S N++V+ R +S PG+
Sbjct: 477 ATERLMAKNGMISRPRSLKRSASSSVVSTPNKSVRSSR-DSTPGS 520
Score = 42 (19.8 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 825 QKTKQRMSTCFNKLKESVSSSEDISAKTKSVI 856
+ K T + E+V + ED+ KTK+++
Sbjct: 15 EDVKMETETGNDGQSEAVENEEDMDVKTKALM 46
Score = 39 (18.8 bits), Expect = 8.0e-29, Sum P(2) = 8.0e-29
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 132 SGAGHDYYQASGTHR-SSQSFDHESPSSLDTRSANS-------QSQERQKD---GKKAST 180
+G G Y + T R +++ P SL RSA+S +S +D G +AS+
Sbjct: 466 NGTGRQYLEEKATERLMAKNGMISRPRSLK-RSASSSVVSTPNKSVRSSRDSTPGSRASS 524
Query: 181 KRKR 184
R+R
Sbjct: 525 TRRR 528
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 797 (285.6 bits), Expect = 4.3e-78, Sum P(2) = 4.3e-78
Identities = 193/505 (38%), Positives = 275/505 (54%)
Query: 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133
+I + + + G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + +
Sbjct: 369 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 428
Query: 1134 METKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE--- 1184
+ T RGPF WE E W I+ +VY G R+ + F++
Sbjct: 429 LLT-GIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQG 486
Query: 1185 KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+I+ +F ++TT+E ++ +L+ I+W +IIDE HR+KN +CKL LK
Sbjct: 487 RIIRGAYRFQAIITTFEMILGGCG--ELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL 544
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
H++LLTGTP F S F Q F GD +
Sbjct: 545 EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLKTEEQ----- 592
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI 1361
+ +L +L+P +LRRLK VE +L K E ++ E + QK + + E+N +
Sbjct: 593 -----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 647
Query: 1362 GNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLC 1409
G++ + N++MELR CNHPYL + E++ DT P +L +++
Sbjct: 648 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSA 707
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG G R A I
Sbjct: 708 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 767
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 768 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 827
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGV 1554
V R T + E ++ A KLG+
Sbjct: 828 KVYRLVTRNSYEREMFDRASLKLGL 852
Score = 52 (23.4 bits), Expect = 4.3e-78, Sum P(2) = 4.3e-78
Identities = 23/91 (25%), Positives = 37/91 (40%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWI 821
G R IP S N + + E EE K S P K + K + K K + + I
Sbjct: 67 GERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKL-KEKTKIGKLII 125
Query: 822 LKQQKTKQRMSTCFNKLKESVSSSEDISAKT 852
+K K++ N+ + +S +E + T
Sbjct: 126 TLGKKQKRK-----NESSDEISDAEQMPQHT 151
Score = 46 (21.3 bits), Expect = 1.9e-77, Sum P(2) = 1.9e-77
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
++ SS + A Q KD ++++R + I + E+ + S V K
Sbjct: 134 KNESSDEISDAEQMPQHTLKD---QDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKI 190
Query: 214 KMNKVDAPG 222
K N PG
Sbjct: 191 KKNSAPLPG 199
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 457 (165.9 bits), Expect = 5.1e-78, Sum P(2) = 5.1e-78
Identities = 135/443 (30%), Positives = 220/443 (49%)
Query: 952 NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV---NKLLKET 1008
+K++ ++++ ++K ++++++K +L K+ EG + + D ++ K +E
Sbjct: 63 SKFLLTKMEQQQLEEQKKKEKLEKKKRSL-KLT--EG--KSLVDGNGEKPVMKKKRGRED 117
Query: 1009 EKY-LQKLGSKLQEAKSMAS-HFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLES-- 1064
E Y + ++ SK +E S+A H +NE + + T S+ E +N+D + K L
Sbjct: 118 ESYNISEVMSK-EEILSVAKKHKDNEDESSSTTSLC--VEDIQKNKDSNSMIKDRLSQTV 174
Query: 1065 --NEKYYL--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMG 1119
N K++ + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMG
Sbjct: 175 RQNSKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMG 234
Query: 1120 LGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERR 1179
LGKTVQ IA I LM + GPF W +E + P I ++Y G E+RR
Sbjct: 235 LGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRR 293
Query: 1180 RLFKEKIVHQKFN------VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233
+L K +H++ V++T++E M D+ L W Y+I+DEGHRIKN C+L
Sbjct: 294 KLVKN--IHKRQGTLQIHPVVVTSFEIAMR--DQNALQHCYWKYLIVDEGHRIKNMKCRL 349
Query: 1234 NADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNS 1293
+LK + + ++LLLTGTP +F+ + F WF+ S + +
Sbjct: 350 IRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFD--ITSLSETA 407
Query: 1294 PDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKR 1353
D +++ LHQ+L PF+LRRLK V E+P K E +V Q++
Sbjct: 408 EDIIAKEREQN--VLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTA 465
Query: 1354 VEENLGSIGNSKGRSVHNSVMEL 1376
+ +I N G S +EL
Sbjct: 466 IVNR--TIANMFG-SCEKETVEL 485
Score = 417 (151.9 bits), Expect = 5.1e-78, Sum P(2) = 5.1e-78
Identities = 93/228 (40%), Positives = 141/228 (61%)
Query: 1329 NELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
++ P ++E+L+ + + ++ + VE N+ I + + N +M LR CNHPY+ +
Sbjct: 505 DQFPSELEKLISQIQPEVNRERTV--VEGNI-PIESEVNLKLRNIMMLLRKCCNHPYMIE 561
Query: 1388 LHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+D + + + +V GK +LDR+LP+LK H+VL FS MT +LD++ DY
Sbjct: 562 Y---PIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYC 618
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
+ + + RLDG S +R I FN D F+FL+S RAGG+G+NL AADTVII+D+
Sbjct: 619 HLRNFIFSRLDGSMSYSEREKNIYSFNT-DPDVFLFLVSTRAGGLGINLTAADTVIIYDS 677
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+ KL
Sbjct: 678 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 725
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 525 (189.9 bits), Expect = 7.2e-78, Sum P(3) = 7.2e-78
Identities = 152/496 (30%), Positives = 244/496 (49%)
Query: 928 SEIEAHKER-LDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI---DRIQREKINLLKI 983
+E EA ++R LDE + + + R +N + + + R++ D IQ E + L+
Sbjct: 363 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED 422
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
+ + R + VN ++ + K L+ A++ A H + E
Sbjct: 423 SSTQ---RQIDIGGGVVVNITQEDYDSNHFK-AQALKNAEN-AYHIHQARTRSFDEDAKE 477
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWL 1102
A+ D+S E Y L SI+ QPT G KL+ YQ+ G+ WL
Sbjct: 478 SRAAALRAADKSGSG-----FGESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWL 531
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
+LY +NGILADEMGLGKTVQ IAL+ +L E +N GPF W E +
Sbjct: 532 ANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRF 591
Query: 1163 APRIHKIVYCGPPEER---RRLFKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWH 1216
P+ + Y G P +R RR + +K ++ + F+V++T+Y+ ++ D +++W
Sbjct: 592 VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQ 649
Query: 1217 YIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
Y+++DE +K++S L +Q +RLLLTGTP +F+S E
Sbjct: 650 YMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHE 709
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
+F++WF+K ES+ +N ++RLH +L+PF+LRR+K VENEL +KIE
Sbjct: 710 EFNEWFSKDIESHAENK-------SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIE 762
Query: 1337 RLVRCEASAYQKLLMKRVE-----ENL--GSIGNSKGR-----SVHNSVMELRNICNHPY 1384
L C+ ++ QKLL + ++ E+L S+G+++ S+ N VM+ R +CNHP
Sbjct: 763 ILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPE 822
Query: 1385 LSQLHAEEVDTLIPKH 1400
L E +T P H
Sbjct: 823 LF----ERQETWSPFH 834
Score = 371 (135.7 bits), Expect = 7.2e-78, Sum P(3) = 7.2e-78
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1104 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1163
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1164 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1222
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1223 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1261
Score = 61 (26.5 bits), Expect = 7.6e-29, Sum P(3) = 7.6e-29
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 332 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 390
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
I E Y + K D + ++E + L+KL
Sbjct: 391 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKL 420
Score = 42 (19.8 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWL 1102
E E ++ED D+ + S E+ + M K Q + +L++YQ L
Sbjct: 134 ESSEADSQSEDNDDEEEELSLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAG-L 192
Query: 1103 VSLYN 1107
+S Y+
Sbjct: 193 LSTYD 197
Score = 41 (19.5 bits), Expect = 7.2e-78, Sum P(3) = 7.2e-78
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE--P 193
+ YY A G + F + L + + ++ K K K++R D S E P
Sbjct: 185 YQYYSA-GLLSTYDPFYEQQRHLLGPKKKKFKEDKKLKAKLKKVKKKRRRDEEFSSEESP 243
Query: 194 QNENPQ 199
++ + Q
Sbjct: 244 RHHHHQ 249
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 802 (287.4 bits), Expect = 7.4e-78, Sum P(3) = 7.4e-78
Identities = 196/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QPT L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 469 ALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 528
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 529 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 588
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S HRLL+TGT
Sbjct: 589 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 647
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 648 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 689
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 690 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 749
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 750 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRER 806
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 807 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 866
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 926
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 927 ERAKKKM 933
Score = 65 (27.9 bits), Expect = 7.4e-78, Sum P(3) = 7.4e-78
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 23 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 81
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 82 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 136
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 137 PKRRGQRQLKKQEKW-KREPSEDEQEQGTSAESEAEQKKVKARR 179
Score = 52 (23.4 bits), Expect = 2.8e-76, Sum P(3) = 2.8e-76
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRKR DSS + +E P++ R + N
Sbjct: 192 KKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKN 229
Score = 50 (22.7 bits), Expect = 2.8e-76, Sum P(3) = 2.8e-76
Identities = 31/131 (23%), Positives = 51/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 27 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 86
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 87 ASKKERIADVK----KMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 136
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 137 PKRRGQRQLKK 147
Score = 49 (22.3 bits), Expect = 7.4e-78, Sum P(3) = 7.4e-78
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 178 RRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 237
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 238 FET----DSDDLIEMTGEGADEQQDNSETI 263
Score = 47 (21.6 bits), Expect = 2.8e-76, Sum P(3) = 2.8e-76
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ-E 170
++ E S + SS + Q+ S H S S+ + S+ SQS+ E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 171 RQKDGKKA 178
+ G K+
Sbjct: 68 SESAGSKS 75
Score = 47 (21.6 bits), Expect = 5.7e-76, Sum P(3) = 5.7e-76
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 13 SSLHSNASS--HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 70
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 71 AGSKSQPVLP 80
Score = 42 (19.8 bits), Expect = 1.9e-75, Sum P(3) = 1.9e-75
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S S + S P + H + + + + E+E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 601 MQSQETAESQAFFTSASQQLESASTR 626
+S + +SQ A ++ S R
Sbjct: 68 SESAGS-KSQPVLPEAKEKPASKKER 92
Score = 41 (19.5 bits), Expect = 5.1e-77, Sum P(3) = 5.1e-77
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 175 VKARRPVPRRTVPKPRVKKQ 194
Score = 39 (18.8 bits), Expect = 7.4e-75, Sum P(2) = 7.4e-75
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 57 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 107
Score = 38 (18.4 bits), Expect = 9.5e-75, Sum P(2) = 9.5e-75
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 7 KSQEEDSSLHSN---ASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 64 SESESESAGSKSQPVL 79
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 815 (292.0 bits), Expect = 8.7e-78, P = 8.7e-78
Identities = 226/659 (34%), Positives = 336/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V+E K K RI ++KI R + ++ +++++ L + DR+ + T+ +
Sbjct: 29 VEELDKDK-RI-QQKIKRFKAKQGQNKFLSEIDDELFNPDYVEIDRILDFSRSTDDNGEP 86
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E + D Q + +E++E + E E ++ + + K
Sbjct: 87 VTHYLVKWCSLPYEDSTWELKQDIDQ--AKIEEFEKLMSREPEMERVERPPADDWKK--- 141
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 142 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL- 193
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 194 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 252
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 253 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 310
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 311 DLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF-------GDLKTEEQ--- 360
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 361 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFA 413
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 414 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 473
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 474 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 533
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 534 AIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 593
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 594 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 652
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 521 (188.5 bits), Expect = 9.7e-78, Sum P(3) = 9.7e-78
Identities = 154/496 (31%), Positives = 246/496 (49%)
Query: 928 SEIEAHKER-LDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI---DRIQREKINLLKI 983
+E EA ++R LDE + + + R +N + + + R++ D IQ E+I L K+
Sbjct: 370 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQ-EEI-LRKL 427
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
D R + VN ++ + K L+ A++ A H + E
Sbjct: 428 EDSSAQ-RQIDIGGGVVVNITQEDYDSNHFK-AQALKNAEN-AYHIHQARTRSFDEDAKE 484
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWL 1102
A+ ++S E Y L SI+ QPT G KL+ YQ+ G+ WL
Sbjct: 485 SRAAALRAANKSGTG-----FGESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWL 538
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
+LY +NGILADEMGLGKTVQ IAL+ +L E +N GPF W E +
Sbjct: 539 ANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRF 598
Query: 1163 APRIHKIVYCGPPEER---RRLFKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWH 1216
P+ + Y G P +R RR + +K ++ + F+V++T+Y+ ++ D +++W
Sbjct: 599 VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQ 656
Query: 1217 YIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSE 1276
Y+++DE +K++S L +Q +RLLLTGTP +F+S E
Sbjct: 657 YMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHE 716
Query: 1277 DFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIE 1336
+F++WF+K ES+ +N ++RLH +L+PF+LRR+K VENEL +KIE
Sbjct: 717 EFNEWFSKDIESHAENK-------SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIE 769
Query: 1337 RLVRCEASAYQKLLMKRVE-----ENL--GSIGNSKGR-----SVHNSVMELRNICNHPY 1384
L+ C+ ++ QKLL + ++ E+L S+G+++ S+ N VM+ R +CNHP
Sbjct: 770 ILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPE 829
Query: 1385 LSQLHAEEVDTLIPKH 1400
L E +T P H
Sbjct: 830 LF----ERQETWSPFH 841
Score = 371 (135.7 bits), Expect = 9.7e-78, Sum P(3) = 9.7e-78
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1111 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1170
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1171 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1230 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1268
Score = 61 (26.5 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 339 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 397
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
I E Y + K D + ++E + L+KL
Sbjct: 398 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKL 427
Score = 44 (20.5 bits), Expect = 9.7e-78, Sum P(3) = 9.7e-78
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE--P 193
+ YY A G + F + L + + +++ K K K++R D +S E P
Sbjct: 192 YQYYSA-GLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESP 250
Query: 194 QNENPQ 199
+ + Q
Sbjct: 251 RRHHHQ 256
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 813 (291.2 bits), Expect = 9.8e-78, Sum P(3) = 9.8e-78
Identities = 219/651 (33%), Positives = 332/651 (50%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEG 988
+ + K+ + + IK W+G + Y+ + +E + ++K+ +++ + K ++++
Sbjct: 279 DFDTEKDESEVQYLIK---WKGWS-YIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQ 334
Query: 989 YLRMVQDAKSDRVN---KLLKETEKYLQKLGSKLQEAKSMASHFE------------NEM 1033
+L V + N +L E K Q + ++ ++ A E +E
Sbjct: 335 WLGKVSPEDVEYFNCQQELASELNKQYQIVEREIAHSRKPAPSNEPEYLCKWMGLPYSEC 394
Query: 1034 DETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG--KL 1091
+ +K++ +++ + +K + + E L ++ +QPT L G +L
Sbjct: 395 SWEDEALIGKKFQSCIDSFHSRNNSKT-IPTRECKALKQRPRFVALKKQPTYLGGENLEL 453
Query: 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXX 1151
R+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL GPF
Sbjct: 454 RDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLST 513
Query: 1152 XXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL----LTTYEYLMNKHDR 1207
W+ E WAP I+ +VY G R + + + +H + L L T ++ K D+
Sbjct: 514 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLK-DK 572
Query: 1208 PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXX 1267
L I W ++ +DE HR+KN L L ++S HRLL+TGTP
Sbjct: 573 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFI 632
Query: 1268 XXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKV 1327
F EDF + K E NG S LH+VL PF+LRR+K V
Sbjct: 633 MPEKFEFWEDFEEDHGKGRE-NGYQS-----------------LHKVLEPFLLRRVKKDV 674
Query: 1328 ENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSKGRSVHNSVMELRNICN 1381
E LP K+E+++R E SA Y K ++ R + L G+ G++ G N VMEL+ CN
Sbjct: 675 EKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSG--FLNIVMELKKCCN 732
Query: 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDV 1441
H YL + EE + + L ++R GKL +LD+LL +L+ +RVL FS M R+LD+
Sbjct: 733 HCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDI 791
Query: 1442 MEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501
+ +YLT K Y + RLDG G R +D FN S F FLLS RAGG+G+NL +ADTV
Sbjct: 792 LAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTV 851
Query: 1502 IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++ A+ K+
Sbjct: 852 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKM 902
Score = 61 (26.5 bits), Expect = 9.8e-78, Sum P(3) = 9.8e-78
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK-KASTKRKR 184
S G D G+ +S S ES S ++ SA S+SQ + K K ++K++R
Sbjct: 19 SEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKER 72
Score = 61 (26.5 bits), Expect = 9.8e-78, Sum P(3) = 9.8e-78
Identities = 31/131 (23%), Positives = 52/131 (39%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 7 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 66
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V + KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 67 ASKKERIADVKKIRKKMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 120
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 121 PKRRGQRQLKK 131
Score = 61 (26.5 bits), Expect = 9.8e-78, Sum P(3) = 9.8e-78
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 80 TSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY 139
+ S+ S ++ AGS SQ V+ ++K E SK E + +Y
Sbjct: 37 SESSESQSESESESAGSKSQP--VLPEAK----EKPASKKERIADVKK--IRKKMWEEYP 88
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQ 199
G RS++S + PS + + S E ++ + K+ + EP + +
Sbjct: 89 DVYGVRRSNRS--RQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW-KREPSEDEQE 145
Query: 200 QLDSRNSVVNPRKGKMNK 217
Q S S +K K +
Sbjct: 146 QGTSAESEAEQKKVKARR 163
Score = 52 (23.4 bits), Expect = 8.2e-77, Sum P(2) = 8.2e-77
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRKR DSS + +E P++ R + N
Sbjct: 176 KKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKN 213
Score = 49 (22.3 bits), Expect = 9.8e-78, Sum P(3) = 9.8e-78
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 162 RRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 221
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 222 FET----DSDDLIEMTGEGADEQQDNSETI 247
Score = 45 (20.9 bits), Expect = 4.7e-76, Sum P(3) = 4.7e-76
Identities = 32/156 (20%), Positives = 55/156 (35%)
Query: 153 HESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ-LDSRNSVVNPR 211
H + + SQS+ Q + + SS S E Q+E+ + S++ V P
Sbjct: 2 HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE 61
Query: 212 KGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPL 271
+ VK + + P + S+ S S +K+E + +E
Sbjct: 62 AKEKPASKKERIADVKKIRKKMWEEYPDVYGVRR-SNRSRQEPSRFNIKEEASSGSE--- 117
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
S + R + + E S Q+QG S S
Sbjct: 118 -SGSPKRRGQRQLKKQEKWKREPSEDEQEQGTSAES 152
Score = 44 (20.5 bits), Expect = 3.3e-77, Sum P(3) = 3.3e-77
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 934 KERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR 972
KER+ +V KI+++ W +Y + R+ R++ R
Sbjct: 70 KERIADVKKIRKKMWE---EYPDVYGVRRSNRSRQEPSR 105
Score = 41 (19.5 bits), Expect = 6.8e-77, Sum P(3) = 6.8e-77
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 159 VKARRPVPRRTVPKPRVKKQ 178
Score = 41 (19.5 bits), Expect = 1.2e-75, Sum P(3) = 1.2e-75
Identities = 25/107 (23%), Positives = 40/107 (37%)
Query: 574 DKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITN 633
+ SG + +E+ +G S E++ESQ S S+ ESA ++ +
Sbjct: 7 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ----SESES-ESAGSK-----SQ 56
Query: 634 PVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRP 680
PV + +A V I K M E G+ N + P
Sbjct: 57 PVLPEAKEKPASKKERIADVKKIRKKMWEEYPDVYGVRRSNRSRQEP 103
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 522 (188.8 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 151/492 (30%), Positives = 243/492 (49%)
Query: 928 SEIEAHKER-LDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI---DRIQREKINLLKI 983
+E EA ++R LDE + + + R +N + + + R++ D IQ E + L+
Sbjct: 363 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED 422
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
+ + R + VN ++ + K L+ A++ A H + E
Sbjct: 423 SSTQ---RQIDIGGGVVVNITQEDYDSNHFK-AQALKNAEN-AYHIHQARTRSFDEDAKE 477
Query: 1044 KYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWL 1102
A+ D+S E Y L SI+ QPT G KL+ YQ+ G+ WL
Sbjct: 478 SRAAALRAADKSGSG-----FGESYSLANPSIRAGEDIPQPTIFNG-KLKGYQLKGMNWL 531
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
+LY +NGILADEMGLGKTVQ IAL+ +L E +N GPF W E +
Sbjct: 532 ANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRF 591
Query: 1163 APRIHKIVYCGPPEERRRLFKEKIVHQK--FNVLLTTYEYLMNKHDRPKLSKIQWHYIII 1220
P+ + Y G P +R++ K+ + Q F+V++T+Y+ ++ D +++W Y+++
Sbjct: 592 VPKFKVLPYWGNPHDRKK--KKTLYTQDAPFHVVITSYQLVVQ--DVKYFQRVKWQYMVL 647
Query: 1221 DEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQ 1280
DE +K++S L +Q +RLLLTGTP +F+S E+F++
Sbjct: 648 DEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNE 707
Query: 1281 WFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVR 1340
WF+K ES+ +N ++RLH +L+PF+LRR+K VENEL +KIE L+
Sbjct: 708 WFSKDIESHAENK-------SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMY 760
Query: 1341 CEASAYQKLLMKRVE-----ENL--GSIGNSKGR-----SVHNSVMELRNICNHPYLSQL 1388
C+ ++ QKLL + ++ E+L S+G+++ S+ N VM+ R +CNHP L
Sbjct: 761 CQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF-- 818
Query: 1389 HAEEVDTLIPKH 1400
E +T P H
Sbjct: 819 --ERQETWSPFH 828
Score = 371 (135.7 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1098 GKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1157
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1158 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1216
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1217 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1255
Score = 61 (26.5 bits), Expect = 5.9e-29, Sum P(3) = 5.9e-29
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 934 KERLDEVFKIKRER---WRGVNKYVKEFHKR--KERIHREKIDRIQRE------KINLLK 982
KE L ++ +E W+ K KE KR KE + + K+D RE K+N L
Sbjct: 332 KETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL- 390
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
I E Y + K D + ++E + L+KL
Sbjct: 391 ITQTELYAHFMS-RKRDMGHDGIQE--EILRKL 420
Score = 42 (19.8 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE--P 193
+ YY A G + F + L + + ++ K K K++R D S E P
Sbjct: 185 YQYYSA-GLLSTCDPFYEQQRHLLGPKKKKFKEDKKLKAKLKKVKKKRRRDEEFSSEESP 243
Query: 194 QNENPQ 199
++ + Q
Sbjct: 244 RHHHHQ 249
Score = 41 (19.5 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQ 1095
E E ++ED D+ + S E+ + M K Q + +L++YQ
Sbjct: 134 ESSEADSQSEDNDDEEEELSLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQ 186
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 457 (165.9 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 129/410 (31%), Positives = 197/410 (48%)
Query: 974 QREKINLLKINDVEGYLRMV-QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENE 1032
Q EK+ ++ L+ D K+ +V + + E Y K+ + + + M+ + +
Sbjct: 110 QEEKLKKERLEKKAAVLKQKGSDKKTVKVERKKRGREDY--KIADVMTKEEIMSKAKKPK 167
Query: 1033 MDETQTVSV---VEKYEPAVE-NEDESDQAKHYLESNEKYYL-MAHSIK-ESV-SEQPTC 1085
M+E SV E E + N D + L N K L ++ + V ++QP
Sbjct: 168 MEEEAQASVKLEAEDIEKLSDTNSDIKGRLSETLRENSKQMLDPERTVNGQPVPAQQPQL 227
Query: 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXX 1145
GG +R YQ+ G+ WL L+ N +NGILADEMGLGKT+Q IA I ++E K GPF
Sbjct: 228 FTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVE-KKVLGPFLV 286
Query: 1146 XXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ----KFNVLLTTYEYL 1201
W SE + P + ++Y GP +ER L K+ HQ V++T++E
Sbjct: 287 VAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMCPVVVTSFEIA 346
Query: 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXX 1261
M DR L + W+Y+I+DEGHRIKN +C+L +LK + ++LLLTGTP
Sbjct: 347 MR--DRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELW 404
Query: 1262 XXXXXXXXXIFNSSEDFSQWFN-KPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
+F+ + F WF+ S+ +N I++ LH +L PF+L
Sbjct: 405 SLLNFLLPDVFDDLKSFESWFDISTITSDAEN-----IVANEREQNILHMLHLILTPFLL 459
Query: 1321 RRLKHKVENELPEKIERLVRCEASAYQKLL-MKRVEENLGSI-GNSKGRS 1368
RRLK V E+P K E +V + Q+ M V + + + G K S
Sbjct: 460 RRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNKTIAKLLGQEKDES 509
Score = 420 (152.9 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 91/188 (48%), Positives = 120/188 (63%)
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEV--DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
+ N +M L+ CNH YL + + D I + +V GK +LDR+LP+LK
Sbjct: 576 LQNILMLLKRCCNHAYLIEYPLDPTTGDFKIDEQ----LVEASGKFLILDRMLPELKKRG 631
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
H+VL FS MT +LD++ DY + Y Y RLDG S DR + KF+ D F+FLLS
Sbjct: 632 HKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSS-DPEVFLFLLST 690
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV-- 1544
RAGG+G+NL +ADTVIIFD+DWNPQ DLQAQ R HRIGQ + V+V R T T++E++
Sbjct: 691 RAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTIDEKILE 750
Query: 1545 RASAEHKL 1552
RASA+ KL
Sbjct: 751 RASAKRKL 758
Score = 51 (23.0 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 1001 VNKLLKETEKYLQKLGSK-----LQEAKSMASHFENEMDETQTVSVVEK---YEPAVENE 1052
+ K ++E EK L++ G K ++EA+ + EM + ++EK Y + +
Sbjct: 45 ITKEMEEEEKNLEEEGEKKEREMMEEARQSRGNDSQEMRFKRLQHLLEKSNIYSKFLLTK 104
Query: 1053 DESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
E Q + L+ E+ A +K+ S++ T
Sbjct: 105 MEQQQQEEKLKK-ERLEKKAAVLKQKGSDKKT 135
Score = 44 (20.5 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 1020 QEAKSMASHFE--NEMDETQTVSVVE------KYEPAVENEDESDQAKHYLESNEK 1067
+E +S++ H NE +E + ++ E K+E V ++ ++ K+ E EK
Sbjct: 7 EETRSISPHCPKPNESEEPEGTTIEETTMEKSKHEEMVITKEMEEEEKNLEEEGEK 62
Score = 43 (20.2 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 768 VDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSE 803
++ S + +T E +EE+K+L + + M E
Sbjct: 35 MEKSKHEEMVITKEMEEEEKNLEEEGEKKEREMMEE 70
Score = 42 (19.8 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1005 LKETEKYLQKLGSKLQEAKS 1024
+K+ EKYL+K+ +L S
Sbjct: 538 MKDLEKYLEKVQQELDSQAS 557
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 818 (293.0 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 225/659 (34%), Positives = 336/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
+++ K K RI ++KI R + ++ ++++E L + DR+ + T+ +
Sbjct: 793 IEDLEKDK-RI-QQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP 850
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E D Q + +E++E + E E+++ + + K
Sbjct: 851 VTHYLVKWCSLPYEDSTWELRQDIDQ--AKIEEFEKLMSREPETERVERPPADDWKK--- 905
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 906 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 957
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 958 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1016
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1017 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1074
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1075 DLEHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSETTFMQEF-------GDLKTEEQ--- 1124
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1125 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFA 1177
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 1178 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 1237
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1238 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1297
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1298 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1357
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1358 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRK 1416
Score = 62 (26.9 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 28/97 (28%), Positives = 39/97 (40%)
Query: 751 HTSQDDPKFSDGSRTIP--VDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
H +DP + G P VDN N SL Q+E+ K + PK K +
Sbjct: 554 HIVAEDPSKNFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKAKKDPKEPKEPKEKKE 613
Query: 809 MQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSS 845
++ K I K+ K K ++ T K K S SS
Sbjct: 614 PKEPKTPKAPK-IPKEPKEK-KVKTATPKPKSSKKSS 648
Score = 53 (23.7 bits), Expect = 3.5e-76, Sum P(3) = 3.5e-76
Identities = 32/152 (21%), Positives = 61/152 (40%)
Query: 750 RHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
R+T + K SD D + R+ S TT Q E +S+ D P K MS + +
Sbjct: 708 RYTEDLEFKISD-EEADDADAAGRDSPS-TTSQSEPQESVDADGPVVEKI-MSSRSVKKQ 764
Query: 810 QK--RKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIEXXXXXXXXXX 867
++ ++ VE+ ++ K K F+ L +S ED+ + +
Sbjct: 765 KESGEEVEVEEFYV----KYKN-----FSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQ 815
Query: 868 XXXXNDFLNDFFKPITTDMDRLKSYKKHRHGR 899
++ ++ F P ++DR+ + + R
Sbjct: 816 NKFLSEIEDELFNPDYVEVDRIMDFARSTDDR 847
Score = 51 (23.0 bits), Expect = 3.5e-76, Sum P(3) = 3.5e-76
Identities = 48/201 (23%), Positives = 77/201 (38%)
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFD--HESPSSLDTR---SANSQSQ---ER----- 171
S PP+ P H +Q+S H Q + H SP S + +S S+ E+
Sbjct: 462 SCPPLQPHPGLH--HQSSPPHPHHQPWAQLHPSPQSTPQKVPVPQHSPSEPFLEKPVPDM 519
Query: 172 -QKDGKKASTKRKRGD--SSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKG 228
Q G A K D SI +PQ + ++ ++ +P K K D PGG
Sbjct: 520 TQVSGPNAQLV-KSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKN-FGKDDFPGGVD--- 574
Query: 229 AEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKF 288
++ N N + G Q E + +E + EK + P+ K
Sbjct: 575 NQELNRNSL-DGSQEEKKKK---KRPKAKKDPKEPKEPKEKKEPKEPKTPKAPKIP--KE 628
Query: 289 PEEVEVSASGQQQGNSLSSAN 309
P+E +V + + +S S+N
Sbjct: 629 PKEKKVKTATPKPKSSKKSSN 649
Score = 47 (21.6 bits), Expect = 9.2e-76, Sum P(3) = 9.2e-76
Identities = 25/118 (21%), Positives = 47/118 (39%)
Query: 148 SQSFDHES-PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
S++F + P +D + N S + ++ KK K+KR + +P+ P++ +
Sbjct: 561 SKNFGKDDFPGGVDNQELNRNSLDGSQEEKK---KKKRPKAK--KDPKE--PKEPKEKKE 613
Query: 207 VVNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEG 263
P+ K K+ P VK A + S + + S + + K EG
Sbjct: 614 PKEPKTPKAPKIPKEPKEKKVKTATPKPKSSKKSSNKKRPDAEASALKKKVNKGKTEG 671
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 819 (293.4 bits), Expect = 2.1e-77, Sum P(4) = 2.1e-77
Identities = 225/659 (34%), Positives = 335/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V++ K K RI ++KI R + ++ ++++E L + DR+ + T+ +
Sbjct: 832 VEDLEKDK-RI-QQKIKRFKSKQGQSKFLSEIEDDLFNPDYVEVDRIMDFARSTDDRGEP 889
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E D Q + +E++E + E E+++ + + K
Sbjct: 890 VTHYLVKWCSLPYEDSTWELRQDLDQ--AKIEEFEKLMSREPETERVERPPADDWKK--- 944
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 945 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 996
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 997 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1055
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1056 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1113
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1114 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF-------GDLKTEEQ--- 1163
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1164 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1216
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ + P L +++
Sbjct: 1217 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQ 1276
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1277 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1336
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1337 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1396
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1397 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1455
Score = 66 (28.3 bits), Expect = 2.1e-77, Sum P(4) = 2.1e-77
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 121 PFTSSRPPVAPSGA---GH-DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
P+ +P APSG GH + Q G++ + F + P S SQ QE G
Sbjct: 159 PYQQQQPQPAPSGPPAQGHPQHMQQMGSYLARGDFSMQQPQQ--RMSQFSQGQEGLSQGS 216
Query: 177 KASTKRKRGDSSISHEPQNENP 198
G +SH PQ ++P
Sbjct: 217 PFIATSGPG-GHLSHMPQ-QSP 236
Score = 55 (24.4 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 41/167 (24%), Positives = 67/167 (40%)
Query: 127 PPV--APSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
PPV P G G Q G + Q+ D S +D S + D +A ++++
Sbjct: 107 PPVPQVPHGGGSGGGQM-GVYPGMQN-DRHGQSFVDGGSMWGPRAVQVPDQIRAPYQQQQ 164
Query: 185 GDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAP-GGFSV--KGAEQSNFNMVPSG- 240
+ S P +PQ + S + M + FS +G Q + + SG
Sbjct: 165 PQPAPSGPPAQGHPQHMQQMGSYLARGDFSMQQPQQRMSQFSQGQEGLSQGSPFIATSGP 224
Query: 241 -GQMEHFSSLSGNMSSILR--VKQEGQNVTEKPLDSANVSNSVPRAS 284
G + H S N++ LR V+Q+ + L +V++S PR S
Sbjct: 225 GGHLSHMPQQSPNIAPSLRHPVQQQFHH-HPAALHGESVAHS-PRFS 269
Score = 53 (23.7 bits), Expect = 2.1e-77, Sum P(4) = 2.1e-77
Identities = 31/152 (20%), Positives = 61/152 (40%)
Query: 750 RHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
R+T + K SD D + R+ S T Q E+ +S+ + P K MS + +
Sbjct: 747 RYTEDLEFKISD-EEADDADAAGRDSPS-NTSQSEQQESVDAEGPVVEKI-MSSRLVKKQ 803
Query: 810 QK--RKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIEXXXXXXXXXX 867
++ ++ VE+ ++ K K F+ L +S ED+ + +
Sbjct: 804 KESGEEVEVEEFYV----KYKN-----FSYLHCQWASVEDLEKDKRIQQKIKRFKSKQGQ 854
Query: 868 XXXXNDFLNDFFKPITTDMDRLKSYKKHRHGR 899
++ +D F P ++DR+ + + R
Sbjct: 855 SKFLSEIEDDLFNPDYVEVDRIMDFARSTDDR 886
Score = 53 (23.7 bits), Expect = 4.7e-76, Sum P(4) = 4.7e-76
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 188 SISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGG 223
SI +PQ + ++ ++ + +P KG K D PGG
Sbjct: 581 SIEQQPQQKKKKKKNNHIAAGDPSKG-FGKDDFPGG 615
Score = 46 (21.3 bits), Expect = 2.1e-77, Sum P(4) = 2.1e-77
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+++ + VT KP S SN P + S ++V G+ +G+ S
Sbjct: 671 ERKAKTVTPKPKSSKKSSNKKPDSEASALKKKVN---KGKTEGSENS 714
Score = 46 (21.3 bits), Expect = 9.8e-76, Sum P(3) = 9.8e-76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 527 SAPG--VTAPYGRLGNARETDRIPPGGSSSGG 556
SAPG + +P+ + + ++P GG S GG
Sbjct: 91 SAPGNGLASPHSQY-HTPPVPQVPHGGGSGGG 121
Score = 37 (18.1 bits), Expect = 7.1e-75, Sum P(2) = 7.1e-75
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
R ++ E + ++A G S S+ Q+E + +D+ VV
Sbjct: 745 RKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVV 791
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 816 (292.3 bits), Expect = 2.4e-77, Sum P(2) = 2.4e-77
Identities = 204/528 (38%), Positives = 294/528 (55%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXX 1145
G +LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I +L E N RGPF
Sbjct: 752 GNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIT---FLQEVYNVGIRGPFLV 808
Query: 1146 XXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL---------FKEKIVH--QKFNVL 1194
WE E W +++ IVY G R+ + K +++ KF+ L
Sbjct: 809 IAPLSTITNWEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDAL 867
Query: 1195 LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXX 1254
+TT+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 868 ITTFEMVLS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 925
Query: 1255 XXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQV 1314
F+S +F + F GD + + +L +
Sbjct: 926 NTVEELFSLLHFLEPTQFSSEAEFLKDF-------GDLKTEEQ----------VQKLQAI 968
Query: 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI--GNSKGRSVH- 1370
L+P +LRRLK VE L K E ++ E + QK + + E+N + G S+ + +
Sbjct: 969 LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGASQSNTPNL 1028
Query: 1371 -NSVMELRNICNHPYL-----SQLHAE--EVDTLIPKHY-LPPIVRLCGKLEMLDRLLPK 1421
N++MELR CNHPYL ++ +E E ++P + + +VR GKL ++D+LLPK
Sbjct: 1029 LNTMMELRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLPK 1088
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
L+A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+
Sbjct: 1089 LRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFV 1148
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R T + E
Sbjct: 1149 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYE 1208
Query: 1542 EQVRASAEHKLGVAN---QSITAGFFDNNTSA---EDRREYLESLLRE 1583
++ A KLG+ QS++ DN+ S + ++ +E LLR+
Sbjct: 1209 REMFDKASLKLGLDKAVLQSMSGR--DNHLSGPIQQFTKKEIEDLLRK 1254
Score = 59 (25.8 bits), Expect = 2.4e-77, Sum P(2) = 2.4e-77
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 141 ASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
A R+ + P L+ S + E DG + K+K+G++S ++E P++
Sbjct: 405 AEAIARARARGEQNIPRVLNEDELPSVNPE-DDDGSRRKRKKKKGETS--DRSKDEKPKK 461
Query: 201 LDSRNSVVNPRKGKMNKV 218
+ S+ + KGK + +
Sbjct: 462 VKGSGSLRSRSKGKPSTI 479
Score = 39 (18.8 bits), Expect = 3.1e-75, Sum P(2) = 3.1e-75
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 525 PSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSI 584
PS+ GV G + R+ P S++ G E+++ K L + G P ++
Sbjct: 177 PST--GVAGQVGAVRPVRQLLLQPVRASAAPGSSESNTGIKPAITLTSAPQQGDPKRITL 234
Query: 585 HAEERKQL-ATGK 596
++ Q+ AT +
Sbjct: 235 VLQQPSQVGATAQ 247
Score = 37 (18.1 bits), Expect = 5.0e-75, Sum P(2) = 5.0e-75
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 1075 IKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIAL 1129
+ + S+ Q G+ R + GL + L NQL + + G+ +V+ +
Sbjct: 235 VLQQPSQVGATAQQGQ-RHVVLGGLPGKIVLQGNQLAALTQAKTPQGQPAKVVTI 288
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 482 (174.7 bits), Expect = 2.7e-77, Sum P(3) = 2.7e-77
Identities = 110/321 (34%), Positives = 161/321 (50%)
Query: 1068 YYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVI 1127
Y L +K + P L+G +LREYQ GL WLV++Y +LNGILADEMGLGKT+Q I
Sbjct: 606 YTLATTQVKTPI---PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTI 661
Query: 1128 ALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187
+L+ +L K + GP WE E+ W P + Y G +ER+ +
Sbjct: 662 SLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTK 721
Query: 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
F+V +T+Y+ ++ H + W Y+I+DE IKN + L ++ S RLL
Sbjct: 722 PNAFHVCITSYKLVLQDHQA--FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLL 779
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
LTGTP +F S +F +WF+ P + S + +
Sbjct: 780 LTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEG-------L 832
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL---MKRVEENLGSIGNS 1364
+ RLH+VLRPF+LRR+K VE ++P+K E ++RC S Q+ L ++
Sbjct: 833 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATG 892
Query: 1365 KGRSVHNSVMELRNICNHPYL 1385
SV N +M+LR +CNHP L
Sbjct: 893 HFMSVINILMQLRKVCNHPNL 913
Score = 398 (145.2 bits), Expect = 2.7e-77, Sum P(3) = 2.7e-77
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2102 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 1580
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2209
Score = 66 (28.3 bits), Expect = 2.7e-77, Sum P(3) = 2.7e-77
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 541 ARETDRIPPGGSSSG----GFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGK 596
A +D PG SS +EADSS E E +++ P D S ++ ++ + +
Sbjct: 455 AYASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEA-PHEDSSSQSDSAEEQSEDE 513
Query: 597 LEAEMQSQETAESQAFFTSASQQLESASTR 626
+ + +ET+ S S S++ E + ++
Sbjct: 514 EDEHSEEEETSRSSESEESESEESEESQSQ 543
Score = 66 (28.3 bits), Expect = 2.7e-77, Sum P(3) = 2.7e-77
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 497 NIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSG- 555
N REGG + S EL+ ++D +SAPG + E D + S S
Sbjct: 434 NELAREGGEL--SVEELLQQYAGAYASD-ASAPGSGS-----SEEEEEDEVEADSSESEP 485
Query: 556 -GFLEADSSSKEVENLKMMDKSGPPAD--HSIHAEERKQLATGKLEAEMQSQETAESQA 611
G EA+ + E ++ D + ++ H+EE + + + E E +S+E+ ESQ+
Sbjct: 486 EGAAEAEEAPHE-DSSSQSDSAEEQSEDEEDEHSEEEETSRSSESE-ESESEESEESQS 542
Score = 61 (26.5 bits), Expect = 9.1e-77, Sum P(3) = 9.1e-77
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 944 KRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ RW RGV + V R R+K +R +RE+ + LR + + V
Sbjct: 153 QERRWKRGVARKVVRMVIRHHEEQRQKEERARREE---------QAKLRRIASTMAKDVR 203
Query: 1003 KLLKETEKYLQ-KLGSKLQEA--KSMASHFENEMDETQTVS 1040
+ EK +Q K S+L+E K++ H + + +T+ S
Sbjct: 204 QFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYS 244
Score = 59 (25.8 bits), Expect = 1.5e-76, Sum P(3) = 1.5e-76
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 81 SGSQIGDSSTAQCAGSSSQVAG--VVKDSKA----GLAENEMSKIEPFTSSRPPVAPSGA 134
+G+ D+S A +GSS + V DS G AE E + E +S
Sbjct: 453 AGAYASDAS-APGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSE 511
Query: 135 GHD--YYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKD 174
+ + + T RSS+S + ES S +++S SQ+ E ++D
Sbjct: 512 DEEDEHSEEEETSRSSESEESESEESEESQS-QSQADEEEED 552
Score = 54 (24.1 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 339 MMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALS-PVESQL 389
+ I +P+ P SSL G V MP+ P+S P SSA+S PV S L
Sbjct: 1403 LAISSPL--PVPSSLP----GPVSSPMPV-PNSSPLASPVSSAVSVPVSSSL 1447
Score = 53 (23.7 bits), Expect = 6.3e-76, Sum P(3) = 6.3e-76
Identities = 18/104 (17%), Positives = 42/104 (40%)
Query: 91 AQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQS 150
A + +S+ +G ++ + E + S+ EP ++ AP ++ +
Sbjct: 455 AYASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEE 514
Query: 151 FDH--ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
+H E +S + S S+S+E ++ ++ + D E
Sbjct: 515 DEHSEEEETSRSSESEESESEESEESQSQSQADEEEEDDDFGVE 558
Score = 49 (22.3 bits), Expect = 1.7e-75, Sum P(3) = 1.7e-75
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 153 HESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
HE SS + SA QS++ + + S + + SS S E ++E ++ S++
Sbjct: 496 HEDSSS-QSDSAEEQSEDEEDEH---SEEEETSRSSESEESESEESEESQSQS 544
Score = 46 (21.3 bits), Expect = 3.4e-75, Sum P(3) = 3.4e-75
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
A E + P SSS ++DS+ ++ E+ + S +EE + + + +++
Sbjct: 488 AAEAEEAPHEDSSS----QSDSAEEQSEDEEDEHSEEEETSRSSESEESESEESEESQSQ 543
Query: 601 MQSQETAESQAF 612
Q+ E E F
Sbjct: 544 SQADEEEEDDDF 555
Score = 45 (20.9 bits), Expect = 6.6e-74, Sum P(4) = 6.6e-74
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ R+ R V ++ +E +++ER RE+ +++R + K DV + V+ +
Sbjct: 161 VARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAK--DVRQFWSNVEKVVQFKQQ 218
Query: 1003 KLLKETEK 1010
L+E K
Sbjct: 219 SRLEEKRK 226
Score = 43 (20.2 bits), Expect = 7.1e-75, Sum P(3) = 7.1e-75
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 752 TSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEK 804
+S+ +P+ + + P ++S S EQ E+++ H++ + + SE+
Sbjct: 480 SSESEPEGAAEAEEAPHEDSSSQSDS-AEEQSEDEEDEHSEEEETSRSSESEE 531
Score = 43 (20.2 bits), Expect = 6.6e-74, Sum P(4) = 6.6e-74
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 1001 VNKLLKE-----TEKYLQKL-GSKLQEAKS--MASHFENEMDETQTVSVVEKYEPAVE-- 1050
+N+L +E E+ LQ+ G+ +A + S E E DE + S + E A E
Sbjct: 433 LNELAREGGELSVEELLQQYAGAYASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAE 492
Query: 1051 ---NEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
+ED S Q+ E +E HS +E S
Sbjct: 493 EAPHEDSSSQSDSAEEQSEDEE-DEHSEEEETS 524
Score = 42 (19.8 bits), Expect = 8.4e-74, Sum P(4) = 8.4e-74
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
S+ A+ + E+E E + S + E + E E Q++ + E+
Sbjct: 501 SQSDSAEEQSEDEEDEHSEEEETSRSSESEESESEESEESQSQSQADEEEE 551
Score = 41 (19.5 bits), Expect = 1.1e-73, Sum P(4) = 1.1e-73
Identities = 17/71 (23%), Positives = 29/71 (40%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESV 1079
+E S +S E+E E++ + A E E++ D YL + ++ A
Sbjct: 520 EEETSRSS--ESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERSEADGGSGPP 577
Query: 1080 SEQPTCLQGGK 1090
+ PT G K
Sbjct: 578 TPGPTTTLGPK 588
Score = 41 (19.5 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1317 PFVLRRLKHKVENELPEKIERL 1338
PF L L+ K + + E++ER+
Sbjct: 1883 PFYLDSLEEKRKQQRSERLERI 1904
Score = 40 (19.1 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 525 PSSAPGVT-APYGRLGNARETDRIPP 549
PSS P T AP G L +++PP
Sbjct: 1284 PSSTPSTTPAPTG-LSLPLAANQVPP 1308
Score = 38 (18.4 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 54 ISRAMETVINQNGLDMEALKSSRLPL 79
++R ++ V Q G + + S R PL
Sbjct: 1002 VNRMLQPVPKQEGRTVVVVNSPRTPL 1027
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 510 (184.6 bits), Expect = 3.5e-77, Sum P(5) = 3.5e-77
Identities = 124/361 (34%), Positives = 196/361 (54%)
Query: 1066 EKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTV 1124
E Y L SI+ QPT G KL+ YQ+ G+ WL +LY +NGILADEMGLGKTV
Sbjct: 494 ESYSLSNPSIQAGEDIPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTV 552
Query: 1125 QVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER---RRL 1181
Q IAL+ +L E +N GPF W E + + P+ + Y G P +R R+
Sbjct: 553 QSIALLAHLAERENIWGPFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKF 612
Query: 1182 FKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+ +K ++ + F+V++T+Y+ ++ D +++W Y+++DE +K+++ L
Sbjct: 613 WSQKTLYTQNAPFHVVITSYQLVVQ--DVKYFQRVKWQYMVLDEAQALKSSTSVRWKILL 670
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
+Q +RLLLTGTP +F+S E+F++WF+K ES+ +N
Sbjct: 671 QFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK----- 725
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE--- 1355
++RLH +L+PF+LRR+K VENEL +KIE L C+ ++ Q+LL + ++
Sbjct: 726 --SAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNKI 783
Query: 1356 --ENL--GSIGN-----SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY-LPPI 1405
E+L S+G+ S S+ N VM+ R +CNHP L + +E+ + P H L P
Sbjct: 784 SIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDLFE--RQEIRS--PFHMSLKPF 839
Query: 1406 V 1406
+
Sbjct: 840 I 840
Score = 375 (137.1 bits), Expect = 3.5e-77, Sum P(5) = 3.5e-77
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1132 GKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1191
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1192 ADF-QSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1250
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1251 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1289
Score = 66 (28.3 bits), Expect = 3.5e-77, Sum P(5) = 3.5e-77
Identities = 35/161 (21%), Positives = 69/161 (42%)
Query: 947 RWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSD--RVNKL 1004
R R + K + + K+ E++ +E R ++E + K+ D E +++AK ++N L
Sbjct: 336 RARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKL-DEE-----MREAKRQQRKLNFL 389
Query: 1005 LKETEKYLQKLGSKLQEAKSMASHFE--NEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
+ +TE Y +G K Q A + E ++++ + ++ + N + D Y
Sbjct: 390 ITQTELYAHFMGGK-QNAGGDCTQEEILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSDYY 448
Query: 1063 ES----NEKYYLMAHSIKESV-SEQPTCLQGGKLREYQMSG 1098
+S N K H + + E+ + L MSG
Sbjct: 449 KSQALKNAKEAYQIHQARTRLFDEEAKDSRCASLHAASMSG 489
Score = 40 (19.1 bits), Expect = 3.5e-77, Sum P(5) = 3.5e-77
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 295 SASGQQQGNSLSSANGVLA 313
S G +G+SL+S+N +LA
Sbjct: 62 SDDGLGEGSSLASSNPLLA 80
Score = 39 (18.8 bits), Expect = 4.4e-77, Sum P(5) = 4.4e-77
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 370 SSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVL-EHDGSSNTLSDANR 422
SS P + +SP E + + R ET +G VL EH +L + +R
Sbjct: 74 SSNPLLAVKKDHISP-EDETKDSCRDGETECGTLNGAVLQEHKADKASLYNFSR 126
Score = 37 (18.1 bits), Expect = 3.5e-77, Sum P(5) = 3.5e-77
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 27 AKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQN 65
+KLA L+ LQ++ E S+ R TV NQN
Sbjct: 25 SKLAKPLH--LQYL-----ERSLRLDTFLRQTATVFNQN 56
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 482 (174.7 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 110/321 (34%), Positives = 161/321 (50%)
Query: 1068 YYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVI 1127
Y L +K + P L+G +LREYQ GL WLV++Y +LNGILADEMGLGKT+Q I
Sbjct: 607 YTLATTQVKTPI---PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTI 662
Query: 1128 ALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187
+L+ +L K + GP WE E+ W P + Y G +ER+ +
Sbjct: 663 SLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTK 722
Query: 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
F+V +T+Y+ ++ H + W Y+I+DE IKN + L ++ S RLL
Sbjct: 723 PNAFHVCITSYKLVLQDHQA--FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLL 780
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
LTGTP +F S +F +WF+ P + S + +
Sbjct: 781 LTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEG-------L 833
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL---MKRVEENLGSIGNS 1364
+ RLH+VLRPF+LRR+K VE ++P+K E ++RC S Q+ L ++
Sbjct: 834 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATG 893
Query: 1365 KGRSVHNSVMELRNICNHPYL 1385
SV N +M+LR +CNHP L
Sbjct: 894 HFMSVINILMQLRKVCNHPNL 914
Score = 398 (145.2 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2053 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2112
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2113 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2171
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 1580
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2172 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2220
Score = 70 (29.7 bits), Expect = 5.5e-76, Sum P(4) = 5.5e-76
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 537 RLGNARETDRIPPGGSSSG----GFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQL 592
R A +D PG SS +EA+SS E E +++ P D S ++ ++
Sbjct: 451 RYAGAYASDASAPGSGSSEEEDEDEVEANSSDCEPEGATEAEEA-PQEDSSSQSDSAEEQ 509
Query: 593 ATGKLEAEMQSQETAESQAFFTSASQQLESASTR 626
+ + E + +ET+ES S S++ E + ++
Sbjct: 510 SEDEDEEHSEEEETSESSESEESESEESEESQSQ 543
Score = 65 (27.9 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 944 KRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ RW RGV + V R R+K +R +RE+ + LR + A + V
Sbjct: 153 QERRWKRGVARKVVRMVIRHHEEQRQKEERARREE---------QAKLRRIASAMAKDVR 203
Query: 1003 KLLKETEKYLQ-KLGSKLQEA--KSMASHFENEMDETQTVS 1040
+ EK +Q K S+L+E K++ H + + +T+ S
Sbjct: 204 QFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYS 244
Score = 58 (25.5 bits), Expect = 1.3e-74, Sum P(4) = 1.3e-74
Identities = 33/131 (25%), Positives = 55/131 (41%)
Query: 54 ISRAMET--VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQ-----VAGVVKD 106
+ AME + + L ME L L +G+ D+S A +GSS + V D
Sbjct: 428 VDHAMELSELAREGELSMEEL----LQRYAGAYASDAS-APGSGSSEEEDEDEVEANSSD 482
Query: 107 SKA-GLAENEMSKIEPFTSSRPPVAPSGAGHD--YYQASGTHRSSQSFDHESPSSLDTRS 163
+ G E E + E +S D + + T SS+S + ES S +++S
Sbjct: 483 CEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEESEESQS 542
Query: 164 ANSQSQERQKD 174
+ +E ++D
Sbjct: 543 QSQADEEEEED 553
Score = 56 (24.8 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 39/143 (27%), Positives = 56/143 (39%)
Query: 344 PMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALS-PVESQLFSTNRGDETSAML 402
PM P + L + + + PS PT L SS S PV + S+ G ++
Sbjct: 1597 PMVAPQTAILAPSPAPPLAPLPVLAPSPGPTSVLASSQTSVPVLAS--SSTPGTPLASAS 1654
Query: 403 SSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMA-----SRDTGKSSVSQT-PV 456
S G ++ S A V + +P A +T+A + G SS SQT +
Sbjct: 1655 SLGPA---PAAALAPSSAQTMVPAPVPSPLPSPASTQTLALPPALASTLGGSSPSQTLSL 1711
Query: 457 FSG---MPFKEQQLKQLRAQCLV 476
+G PF Q L A LV
Sbjct: 1712 GTGNPQSPFSAQTLSLTPASSLV 1734
Score = 54 (24.1 bits), Expect = 3.3e-74, Sum P(4) = 3.3e-74
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 154 ESPSSLDTRSANSQSQERQKD-GKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
E+P D+ S + ++E+ +D ++ S + + +SS S E ++E ++ S++
Sbjct: 493 EAPQE-DSSSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEESEESQSQS 544
Score = 45 (20.9 bits), Expect = 2.2e-73, Sum P(4) = 2.2e-73
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 1007 ETEKYLQKLGSKLQEAKSMASHFENE--MDETQTVSVVEKYEPAVENEDESD---QAKHY 1061
E E+ Q+ S ++ S E+E +E +T E E E +ES QA
Sbjct: 490 EAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEE 549
Query: 1062 LESNEKY---YLMAHSIKESVSE 1081
E ++ + YL+A ++S ++
Sbjct: 550 EEEDDDFGVEYLLARDEEQSEAD 572
Score = 45 (20.9 bits), Expect = 7.7e-29, Sum P(3) = 7.7e-29
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 49 MPYQVISRAMETVINQNGLDMEALKSSRLP---LTSGSQIGDSSTAQCAGSSSQ 99
+P S +V+ + + L SS P L S S +G + A A SS+Q
Sbjct: 1617 LPVLAPSPGPTSVLASSQTSVPVLASSSTPGTPLASASSLGPAPAAALAPSSAQ 1670
Score = 41 (19.5 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1317 PFVLRRLKHKVENELPEKIERL 1338
PF L L+ K + + E++ER+
Sbjct: 1894 PFYLDSLEEKRKRQRSERLERI 1915
Score = 40 (19.1 bits), Expect = 5.8e-73, Sum P(4) = 5.8e-73
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 165 NSQSQERQKDGKKASTK--RKRGDSSISHEPQNENPQQLDS 203
+ S+E +D +A++ G + PQ ++ Q DS
Sbjct: 465 SGSSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDS 505
Score = 40 (19.1 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 525 PSSAPGVT-APYGRLGNARETDRIPP 549
PSS P T AP G L +++PP
Sbjct: 1284 PSSTPSTTPAPTG-LSLPLAANQVPP 1308
Score = 40 (19.1 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 330 SQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQL 389
S +P P + + P P S + + V ++PI S+ + P+ + L
Sbjct: 1413 SSLPG-PASSPVPVPNSSPLASPVSSTVSVPVSSSLPISVSTTLPSPASAPLTIPISAPL 1471
Score = 39 (18.8 bits), Expect = 5.8e-73, Sum P(4) = 5.8e-73
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQ-AKHYLESNEKYYLMAHSIKESV 1079
E + + E+E E++ + A E E+E D YL + ++ A
Sbjct: 519 EEEETSESSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPP 578
Query: 1080 SEQPTCLQGGK 1090
+ PT G K
Sbjct: 579 TPGPTTTLGPK 589
Score = 38 (18.4 bits), Expect = 5.5e-76, Sum P(4) = 5.5e-76
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 124 SSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRK 183
+S PP P G+ D G + + + + +++ E Q++G A T+R+
Sbjct: 272 ASSPP--PPGSRMDDEAIDGDFQPQEEEEEDDEETIEV--------EEQQEGNDAETQRR 321
Score = 38 (18.4 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 54 ISRAMETVINQNGLDMEALKSSRLPL 79
++R ++ V Q G + + S R PL
Sbjct: 1002 VNRMLQPVPKQEGRTVVVVNSPRTPL 1027
Score = 37 (18.1 bits), Expect = 1.3e-74, Sum P(4) = 1.3e-74
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARE-TD 545
QS D S P P LG +E TD
Sbjct: 568 QSEADGGSGPPTPGPTTTLGPKKEITD 594
Score = 37 (18.1 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
++ +EA S +++ E Q+ E++ E + S+ + E +E+
Sbjct: 489 TEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEESEE 539
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 815 (292.0 bits), Expect = 3.6e-77, Sum P(3) = 3.6e-77
Identities = 226/659 (34%), Positives = 336/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V+E K K RI ++KI R + ++ +++++ L + DR+ + T+ +
Sbjct: 844 VEELDKDK-RI-QQKIKRFKAKQGQNKFLSEIDDELFNPDYVEIDRILDFSRSTDDNGEP 901
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E + D Q + +E++E + E E ++ + + K
Sbjct: 902 VTHYLVKWCSLPYEDSTWELKQDIDQ--AKIEEFEKLMSREPEMERVERPPADDWKK--- 956
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 957 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL- 1008
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 1009 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1067
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1068 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1125
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1126 DLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF-------GDLKTEEQ--- 1175
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1176 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFA 1228
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 1229 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 1288
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1289 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1348
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1349 AIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1408
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1409 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1467
Score = 74 (31.1 bits), Expect = 3.6e-77, Sum P(3) = 3.6e-77
Identities = 26/99 (26%), Positives = 39/99 (39%)
Query: 113 ENEMSKIEPFTSSRPPVAPSGAGH-DYYQASGTHRSSQSFDHESPSSLDTRSAN--SQSQ 169
+ + + +P + P P G GH + Q G + + F + + N SQ Q
Sbjct: 161 QQQQQQPQPTQPPQAPSGPPGQGHPQHMQQMGNYMARGDFSMQQHGQPQQQRMNQFSQGQ 220
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQLDS-RNSV 207
E G G +SH PQ +NP S R+SV
Sbjct: 221 EGLNQGNPFIATS--GPGHLSHVPQ-QNPSMAPSLRHSV 256
Score = 62 (26.9 bits), Expect = 6.6e-76, Sum P(3) = 6.6e-76
Identities = 30/121 (24%), Positives = 52/121 (42%)
Query: 187 SSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF--SVKG----AEQSNFNMVPSG 240
SS+ H P N+N +L + + KM+ +D P + G + S ++ P
Sbjct: 52 SSLHHPPANQNQAKLTHFDHYNQYEQQKMHLMDQPNRMISNAPGNGIASPHSQYHNPPVP 111
Query: 241 GQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQ 300
Q+ H S SG M ++ E + +DS ++ PRA + P+++ QQ
Sbjct: 112 -QVPHGSGASGQMGVYPSMQNERHG--QPFVDSGSMWG--PRAV--QVPDQIRAPYQQQQ 164
Query: 301 Q 301
Q
Sbjct: 165 Q 165
Score = 55 (24.4 bits), Expect = 2.5e-74, Sum P(4) = 2.5e-74
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 98 SQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHES-P 156
+QV+G +++ +++ + +EP +P +++ A G S+SF E P
Sbjct: 576 TQVSG--PNTQLVKSDDYLPSVEP----QPQQKKKKKKNNHIAAEGP---SKSFGKEDFP 626
Query: 157 SSLDTR--SANSQ--SQERQKDGKKASTKRKRGDSSI---SHEPQN-------ENPQQLD 202
LD++ S NS SQE +K KK K++ D EP+ + P++
Sbjct: 627 GGLDSQNLSRNSVDCSQEDKKKKKKPKAKKEPKDPKEPKEKKEPKTPKVPKTPKEPKEKK 686
Query: 203 SRNSVVNPRKGK 214
++N+ P+ K
Sbjct: 687 AKNTTPKPKTSK 698
Score = 50 (22.7 bits), Expect = 1.2e-74, Sum P(3) = 1.2e-74
Identities = 63/280 (22%), Positives = 90/280 (32%)
Query: 114 NEMSK-IEPFTSSRPPVAPSGAGHDYY-------QASGTHRSSQSFDHESPSSLDTRS-A 164
N+ S+ E P +A SG GH + A S Q F H P++L S A
Sbjct: 214 NQFSQGQEGLNQGNPFIATSGPGHLSHVPQQNPSMAPSLRHSVQQFHHHPPTALHGESVA 273
Query: 165 NS---QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAP 221
+S Q+ + T S P N Q SR N +G +N
Sbjct: 274 HSPRFSPNPPQQGAVRPQTLNFSSRSQTVPSPTINNSGQY-SRYPYSNLNQGLVNNTGMN 332
Query: 222 GGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVP 281
+ N VP F S SG ++ Q + P S N N+
Sbjct: 333 QNLGLTNNTPMN-QSVPRYPNAVGFPSNSGQ--GLMHQ----QPI--HPSGSLNQMNT-- 381
Query: 282 RASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMI 341
+ + P+ S ++S+ G + AG P E P P
Sbjct: 382 QTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQV--RPGSAGIPMEVGSYPNIPHPQPS 439
Query: 342 ETPMQQPTVSSLGANAFG--KVHGAMP-IGPSSYPTGELG 378
P P +G G + P +G SS P E+G
Sbjct: 440 HQP---PGAMGIGQRNMGPRNMQQNRPFMGMSSTPR-EMG 475
Score = 45 (20.9 bits), Expect = 2.6e-76, Sum P(4) = 2.6e-76
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGN 303
+++ +N T KP S SN + +S ++V G + +
Sbjct: 684 EKKAKNTTPKPKTSKKTSNKKTDSESSAAKKKVNKGKEGSENSD 727
Score = 43 (20.2 bits), Expect = 3.6e-77, Sum P(3) = 3.6e-77
Identities = 24/107 (22%), Positives = 37/107 (34%)
Query: 751 HTSQDDPKFSDGSRTIP--VD--NSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWI 806
H + + P S G P +D N RN + + E ++ K P EK
Sbjct: 610 HIAAEGPSKSFGKEDFPGGLDSQNLSRNSVDCSQEDKKKKKKPKAKKEPKDPKEPKEKKE 669
Query: 807 MDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTK 853
K ++ K + T + T K + SE +AK K
Sbjct: 670 PKTPKVPKTPKEPKEKKAKNTTPKPKTS-KKTSNKKTDSESSAAKKK 715
Score = 40 (19.1 bits), Expect = 2.6e-76, Sum P(4) = 2.6e-76
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 574 DKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFF------TSASQQLESASTRG 627
D G S +RK+ T LE ++ +E ++ A TS S+Q ESA G
Sbjct: 742 DDPGVQKRRSSRQVKRKRY-TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESADAEG 800
Score = 39 (18.8 bits), Expect = 9.6e-77, Sum P(3) = 9.6e-77
Identities = 16/87 (18%), Positives = 35/87 (40%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
+++T SS + + + EN + DK+ PP+ H E+ + + +
Sbjct: 697 SKKTSNKKTDSESSAAKKKVNKGKEGSENSDL-DKTPPPSPHP-EDEDDPGVQKRRSSRQ 754
Query: 601 MQSQETAESQAFFTSASQQLESASTRG 627
++ + E F S ++ + A G
Sbjct: 755 VKRKRYTEDLEFKIS-DEEADDADAAG 780
Score = 37 (18.1 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 811 KRKLLVEQNWILKQQKTKQRMSTC 834
+ +L+ Q +QQ +Q+M TC
Sbjct: 495 QERLISGQQLPSQQQSFQQQMPTC 518
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 821 (294.1 bits), Expect = 3.8e-77, Sum P(2) = 3.8e-77
Identities = 206/524 (39%), Positives = 288/524 (54%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFXXXX 1147
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q IA +L E N GPF
Sbjct: 427 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA---FLQEVYNVGIHGPFLVIA 483
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFNVLLT 1196
WE E N W ++ IVY G R+ + + ++ + KF+ L+T
Sbjct: 484 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 542
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E +++ D P+L +I+W +IIDE HR+KN +CKL LKH H++LLTGTP
Sbjct: 543 TFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 600
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F S +F + F GD + + +L +L+
Sbjct: 601 VEELFSLLHFLEPSQFPSESEFLKDF-------GDLKTEEQ----------VQKLQAILK 643
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE L K E ++ E + QK + + E+N + G + + N
Sbjct: 644 PMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLN 703
Query: 1372 SVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL E++ T +IP + L +VR GKL ++D+LLPKLK
Sbjct: 704 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 763
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 764 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 823
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
L RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T + E +
Sbjct: 824 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 883
Query: 1544 VRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 1583
+ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 884 MFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 926
Score = 52 (23.4 bits), Expect = 3.8e-77, Sum P(2) = 3.8e-77
Identities = 21/116 (18%), Positives = 45/116 (38%)
Query: 186 DSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEH 245
D S P+ E ++ ++S ++ K K G KG + N + P G+
Sbjct: 104 DELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLN-TITPVVGKKRK 162
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
++ S N + Q + E + + V R K+ E++++ + ++
Sbjct: 163 RNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKR---KKYTEDLDIKITDDEE 215
Score = 47 (21.6 bits), Expect = 1.3e-76, Sum P(2) = 1.3e-76
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
G+SSG + S+ EV L S P I EE ++L K + E ++ AE+
Sbjct: 28 GASSGLSVVKVLSASEVAALSSPASSAPHTGGKIGMEENRRLEHQKKQ-EKANRIVAEAI 86
Query: 611 AFFTSASQQ 619
A + +Q
Sbjct: 87 ARARARGEQ 95
Score = 41 (19.5 bits), Expect = 5.5e-76, Sum P(2) = 5.5e-76
Identities = 17/85 (20%), Positives = 35/85 (41%)
Query: 181 KRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVK---GAEQSNFNMV 237
++KR S + E P++ + + K K+N + G K ++ S+ ++
Sbjct: 116 EKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVM 175
Query: 238 PSGGQMEHFSSLSGNMSSILRVKQE 262
P+ E S S +VK++
Sbjct: 176 PAQSPREDEESSIQKRRSNRQVKRK 200
Score = 41 (19.5 bits), Expect = 5.5e-76, Sum P(2) = 5.5e-76
Identities = 30/139 (21%), Positives = 52/139 (37%)
Query: 37 LQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGS 96
L+H K K + + + I+RA QN L LP + G+ + +
Sbjct: 69 LEHQKKQEKANRIVAEAIARARARG-EQN--IPRVLNEDELPSVRPEEEGEKKRRKKSSG 125
Query: 97 SSQVAGVVKDSK-AGLAENE-MSKIEPFTSSRPPVAPSGAGHDYYQASGTH-RSSQSFDH 153
K SK +G ++ + SK+ T P V + S +QS
Sbjct: 126 ERLKEEKPKKSKTSGTSKTKGKSKLNTIT---PVVGKKRKRNTSSDNSDVEVMPAQSPRE 182
Query: 154 ESPSSLDTRSANSQSQERQ 172
+ SS+ R +N Q + ++
Sbjct: 183 DEESSIQKRRSNRQVKRKK 201
Score = 39 (18.8 bits), Expect = 9.0e-76, Sum P(2) = 9.0e-76
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
S + + +K KK+S +R + + + + + S+ + + P GK K
Sbjct: 108 SVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSKLNTITPVVGKKRK 162
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 813 (291.2 bits), Expect = 4.0e-77, Sum P(4) = 4.0e-77
Identities = 223/653 (34%), Positives = 339/653 (51%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQR--------EKIN- 979
+ ++ K+ + + IK W+G + Y+ + +E + ++K+ +++ ++I
Sbjct: 299 DFDSEKDEGEVQYLIK---WKGWS-YIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQ 354
Query: 980 -LLKIN--DVEGYLRMVQDAKSDRVNKLLKETEKYL-QKLGSKLQEAKSMASHFE---NE 1032
L K++ DVE Y Q+ S+ +NK + E+ + + + E + + +E
Sbjct: 355 WLGKVSPEDVE-YFNCQQELASE-LNKQYQIVERVIGNRKPAPSNEPEYLCKWMGLPYSE 412
Query: 1033 MDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG--K 1090
+ +K++ +++ + +K + + E L ++ +QP L G +
Sbjct: 413 CSWEDEALIGKKFQSCIDSFHSRNNSKT-IPTRECKALKQRPRFVALKKQPAYLGGENLE 471
Query: 1091 LREYQMSGLRWLVSLYNNQLNG-ILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXX 1149
LR+YQ+ GL WL + N+ N ILADEMGLGKT+Q I+ + YL GPF
Sbjct: 472 LRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPL 531
Query: 1150 XXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL----LTTYEYLMNKH 1205
W+ E WAP I+ +VY G R + + + +H + L L T ++ K
Sbjct: 532 STLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLK- 590
Query: 1206 DRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXX 1265
D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGTP
Sbjct: 591 DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLH 650
Query: 1266 XXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKH 1325
F EDF + K E NG S LH+VL PF+LRR+K
Sbjct: 651 FIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------LHKVLEPFLLRRVKK 692
Query: 1326 KVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSKGRSVHNSVMELRNI 1379
VE LP K+E+++R E SA Y K ++ R + L G+ G++ G N VMEL+
Sbjct: 693 DVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSG--FLNIVMELKKC 750
Query: 1380 CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLL 1439
CNH YL + EE + + L ++R GKL +LD+LL +L+ +RVL FS M R+L
Sbjct: 751 CNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRML 809
Query: 1440 DVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 1499
D++ +YLT K Y + RLDG G R +D FN S F FLLS RAGG+G+NL +AD
Sbjct: 810 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 869
Query: 1500 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
TV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++ A+ K+
Sbjct: 870 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKM 922
Score = 61 (26.5 bits), Expect = 4.0e-77, Sum P(4) = 4.0e-77
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK-KASTKRKR 184
S G D G+ +S S ES S ++ SA S+SQ + K K ++K++R
Sbjct: 38 SEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKER 91
Score = 59 (25.8 bits), Expect = 6.5e-77, Sum P(4) = 6.5e-77
Identities = 29/131 (22%), Positives = 50/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 26 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 85
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V + + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 86 ASKKERIADVKKKTHRCMWEEYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 140
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 141 PKRRGQRQLKK 151
Score = 49 (22.3 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ DSS + +E P++ R + N
Sbjct: 196 KKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKN 233
Score = 48 (22.0 bits), Expect = 4.0e-77, Sum P(4) = 4.0e-77
Identities = 39/176 (22%), Positives = 65/176 (36%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 182 RRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 241
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPA 796
+ D+ ++ T + + D S TI R G T ++ + P+
Sbjct: 242 FET----DSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPS 297
Query: 797 PKYTMSEKWIMDMQ---KRK--LLVEQNWILKQQKTKQRMSTCFNKLKESVSSSED 847
+ SEK ++Q K K + W ++ +Q++ KL E+ ED
Sbjct: 298 GDFD-SEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKG-LKKL-ENFKKKED 350
Score = 47 (21.6 bits), Expect = 1.2e-75, Sum P(4) = 1.2e-75
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 12 SSLHSNASS--HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 69
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 70 AGSKSQPVLP 79
Score = 42 (19.8 bits), Expect = 3.9e-75, Sum P(4) = 3.9e-75
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S S + S P + H + + + + E+E
Sbjct: 7 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 66
Query: 601 MQSQETAESQAFFTSASQQLESASTR 626
+S + +SQ A ++ S R
Sbjct: 67 SESAGS-KSQPVLPEAKEKPASKKER 91
Score = 41 (19.5 bits), Expect = 4.0e-77, Sum P(4) = 4.0e-77
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 179 VKARRPVPRRTVPKPRVKKQ 198
Score = 38 (18.4 bits), Expect = 2.6e-75, Sum P(2) = 2.6e-75
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 6 KSQEEDSSLHSN---ASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 63 SESESESAGSKSQPVL 78
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 815 (292.0 bits), Expect = 4.5e-77, P = 4.5e-77
Identities = 226/659 (34%), Positives = 336/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V+E K K RI ++KI R + ++ +++++ L + DR+ + T+ +
Sbjct: 81 VEELDKDK-RI-QQKIKRFKAKQGQNKFLSEIDDELFNPDYVEIDRILDFSRSTDDNGEP 138
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E + D Q + +E++E + E E ++ + + K
Sbjct: 139 VTHYLVKWCSLPYEDSTWELKQDIDQ--AKIEEFEKLMSREPEMERVERPPADDWKK--- 193
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 194 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL- 245
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 246 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 304
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 305 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 362
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 363 DLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF-------GDLKTEEQ--- 412
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 413 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFA 465
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 466 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 525
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 526 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 585
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 586 AIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 645
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 646 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 704
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 785 (281.4 bits), Expect = 6.5e-77, P = 6.5e-77
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 80 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 139
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 140 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 199
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 200 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 257
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 258 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 300
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 301 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 360
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 361 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 420
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 421 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 480
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 481 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 540
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 541 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 577
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 822 (294.4 bits), Expect = 6.7e-77, Sum P(3) = 6.7e-77
Identities = 224/659 (33%), Positives = 335/659 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
+++ K K RI ++KI R + ++ ++++E L + DR+ + T+ +
Sbjct: 843 IEDLEKDK-RI-QQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP 900
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E D Q + +E++E + E E+++ + + K
Sbjct: 901 VTHYLVKWCSLPYEDSTWERRQDIDQ--AKIEEFEKLMSREPETERVERPPADDWKK--- 955
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 956 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 1007
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 1008 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1066
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1067 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1124
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1125 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF-------GDLKTEEQ--- 1174
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1175 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1227
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ + P L +++
Sbjct: 1228 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQ 1287
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1288 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1347
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1348 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1407
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1408 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1466
Score = 61 (26.5 bits), Expect = 6.7e-77, Sum P(3) = 6.7e-77
Identities = 28/97 (28%), Positives = 38/97 (39%)
Query: 751 HTSQDDPKFSDGSRTIP--VDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
H +DP G P VDN N SL Q+E+ K + + PK K +
Sbjct: 605 HIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKE 664
Query: 809 MQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSS 845
++ K I K+ K K + T K K S SS
Sbjct: 665 PKEPKTPKAPK-IPKEPKEK-KAKTATPKPKSSKKSS 699
Score = 54 (24.1 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 47/199 (23%), Positives = 77/199 (38%)
Query: 127 PPVAPSGAGHDYYQASGTHRSSQSFD--HESPSSLDTR---SANSQSQ---ER------Q 172
PP+ P H +Q+S H Q + H SP + + +S S+ E+ Q
Sbjct: 515 PPLQPHPGLH--HQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQ 572
Query: 173 KDGKKASTKRKRGD--SSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAE 230
G A K D SI +PQ + ++ ++ +P KG K D PGG +
Sbjct: 573 VSGPNAQLV-KSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKG-FGKDDFPGGVD---NQ 627
Query: 231 QSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPE 290
+ N N + G Q E S + +E + EK + P+ K P+
Sbjct: 628 ELNRNSL-DGSQEEKKKK---KRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIP--KEPK 681
Query: 291 EVEVSASGQQQGNSLSSAN 309
E + + + +S S+N
Sbjct: 682 EKKAKTATPKPKSSKKSSN 700
Score = 46 (21.3 bits), Expect = 6.7e-77, Sum P(3) = 6.7e-77
Identities = 73/316 (23%), Positives = 101/316 (31%)
Query: 78 PLTSGSQI-GDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKI----EPFTSSRPPVAPS 132
P SG G Q GS G + G + MS+ E P +A S
Sbjct: 172 PAPSGPPAQGHPQHMQQMGSY-MARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATS 230
Query: 133 GAGHDYY-------QASGTHRSSQSFDHESPSSLDTRS-ANS---QSQERQKDGKKASTK 181
G GH + A S Q F H ++L S A+S Q+ + T
Sbjct: 231 GPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTL 290
Query: 182 RKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGG 241
S P N Q SR N +G +N + N VP
Sbjct: 291 NFSSRSQTVPSPTINNSGQY-SRYPYSNLNQGLVNNTGMNQNLGLTNNTPMN-QSVPRYP 348
Query: 242 QMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
F S SG ++ Q + P S N N+ + + P+ S
Sbjct: 349 NAVGFPSNSGQ--GLMHQ----QPI--HPSGSLNQMNT--QTMHPSQPQGTYASPPPMSP 398
Query: 302 GNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPT-VSSLGANAFG- 359
++S+ G + AG P E V +P NM P QP +G G
Sbjct: 399 MKAMSNPAGTPPPQV--RPGSAGIPME---VGSYP-NMPHPQPSHQPPGAMGIGQRNMGP 452
Query: 360 -KVHGAMP-IGPSSYP 373
+ + P IG SS P
Sbjct: 453 RNMQQSRPFIGMSSAP 468
Score = 43 (20.2 bits), Expect = 1.4e-76, Sum P(3) = 1.4e-76
Identities = 33/158 (20%), Positives = 61/158 (38%)
Query: 188 SISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF--SVKG----AEQSNFNMVPSGG 241
S+ H N+N +L + + KM+ +D P + G + S ++ P
Sbjct: 53 SLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYH-TPPVP 111
Query: 242 QMEHFSSLSGNMSSILRVKQE--GQNVTEKPL----DSANVSNSV--PRASNSKFPEEVE 293
Q+ H S G M ++ E GQ+ + + V + + P P+ +
Sbjct: 112 QVPHGGSGGGQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQ 171
Query: 294 VSASGQQ-QGNSLSSAN-GVLASRGTWNQNRAGFPFER 329
+ SG QG+ G +RG ++ + G P +R
Sbjct: 172 PAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQR 209
Score = 42 (19.8 bits), Expect = 2.8e-74, Sum P(3) = 2.8e-74
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+++ + T KP S SN P + S ++V G+ +G+ S
Sbjct: 682 EKKAKTATPKPKSSKKSSNKKPDSEASALKKKVN---KGKTEGSENS 725
Score = 40 (19.1 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEE-RKQLATGKLEAEMQ 602
++ S++ + E + +D GP + + + +KQ +G+ E E++
Sbjct: 781 DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGE-EVEIE 824
Score = 37 (18.1 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
R ++ E + ++A G S S+ Q+E + +D+ VV
Sbjct: 756 RKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVV 802
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 821 (294.1 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 226/659 (34%), Positives = 337/659 (51%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V++ K K RI ++KI R + ++ ++++E L + DR+ + T++ +
Sbjct: 842 VEDLEKDK-RI-QQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDERGEP 899
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E D Q + +E++E + E E+++ + + K
Sbjct: 900 VTHYLVKWCSLPYEDSTWELRQDIDQ--AKIEEFEKLMSREPETERVERPPADDWKK--- 954
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 955 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 1006
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 1007 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDP 1065
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1066 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1123
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1124 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF-------GDLKTEEQ--- 1173
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1174 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1226
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 1227 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 1286
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1287 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1346
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1347 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 1406
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
V + R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1407 SVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1465
Score = 60 (26.2 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 29/97 (29%), Positives = 37/97 (38%)
Query: 751 HTSQDDPKFSDGSRTIP--VDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
H +DP S G P VDN N SL Q+E+ K PK K +
Sbjct: 604 HIVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKVKKDPKEPKEPKEKKE 663
Query: 809 MQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSS 845
++ K I K+ K K + T K K S SS
Sbjct: 664 PKEPKTPKAPK-IPKEPKEK-KAKTATPKPKSSKKSS 698
Score = 53 (23.7 bits), Expect = 2.2e-74, Sum P(4) = 2.2e-74
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 148 SQSFDHES-PSSLDTRSANSQSQERQKDGKKASTKRK-RGDSSISHEP-QNENPQQLDSR 204
S+SF + P +D + N S + ++ KK + K + D EP + + P++ +
Sbjct: 611 SKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKVKKDPKEPKEPKEKKEPKEPKTP 670
Query: 205 NSVVNPRKGKMNK 217
+ P++ K K
Sbjct: 671 KAPKIPKEPKEKK 683
Score = 46 (21.3 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 38/155 (24%), Positives = 50/155 (32%)
Query: 78 PLTSGSQI-GDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEP----FTSSRPPVAPS 132
P SG G Q GS G + G + MS+ P P +A S
Sbjct: 171 PTPSGPPAQGHPQHMQQMGSY-MARGDFSMQQHGQPQQRMSQFSPGQEGLNQGSPFIATS 229
Query: 133 GAGHDYY-------QASGTHRSSQSFDHESPSSLDTRS-ANS---QSQERQKDGKKASTK 181
G GH + A S F H P++L S A+S Q+ + T
Sbjct: 230 GPGHLSHVPQQSPSMAPSLRHSVPQFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTL 289
Query: 182 RKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN 216
S P N Q SR N +G +N
Sbjct: 290 NFSSRSQTVPSPTMNNSGQY-SRYPYSNLNQGLVN 323
Score = 42 (19.8 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 134 AGHDYYQASGTHRSSQ--SFDHESPSSLDTRSANSQSQERQKD 174
AG D S T +S Q S D E P + + +S+S ++QKD
Sbjct: 777 AGRD--SPSNTSQSEQQESVDAEGP--VVEKIMSSRSVKKQKD 815
Score = 42 (19.8 bits), Expect = 2.2e-74, Sum P(4) = 2.2e-74
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+++ + T KP S SN P + S ++V G+ +G+ S
Sbjct: 681 EKKAKTATPKPKSSKKSSNKKPDSEASALKKKVN---KGKTEGSENS 724
Score = 39 (18.8 bits), Expect = 2.2e-74, Sum P(4) = 2.2e-74
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEE-RKQLATGKLEAEMQ 602
++ S++ + E + +D GP + + + +KQ +G+ E E++
Sbjct: 780 DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKDSGE-EVEVE 823
Score = 37 (18.1 bits), Expect = 9.7e-76, Sum P(3) = 9.7e-76
Identities = 42/200 (21%), Positives = 76/200 (38%)
Query: 188 SISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF--SVKG----AEQSNFNMVPSGG 241
S+ H N+N +L + + KM+ +D P S G + S ++ P
Sbjct: 53 SLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSSAPGNGLASPHSQYHGPPVP- 111
Query: 242 QMEHFSSLSGNMSSILRVKQE--GQNVTEKPLDSANVSNSVPRASNSKF-----PEEVEV 294
Q+ H S M ++ E GQ+ + + VP + + P+ +
Sbjct: 112 QVPHGGSGGSQMGVYPGMQNERHGQSFVDSGSMWGPRAVQVPDQIRAPYQQQPQPQPPQP 171
Query: 295 SASGQQ-QGNSLSSAN-GVLASRGTWNQNRAGFPFERSQVPRF-PGNMMIETPMQQPTVS 351
+ SG QG+ G +RG ++ + G P +R + +F PG + P ++
Sbjct: 172 TPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQR--MSQFSPGQEGLN--QGSPFIA 227
Query: 352 SLGANAFGKVHGAMP-IGPS 370
+ G V P + PS
Sbjct: 228 TSGPGHLSHVPQQSPSMAPS 247
Score = 37 (18.1 bits), Expect = 4.4e-75, Sum P(2) = 4.4e-75
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
R ++ E + ++A G S S+ Q+E + +D+ VV
Sbjct: 755 RKRYTEDLEFKISDEEADDADTAGRDSPSNTSQSEQQESVDAEGPVV 801
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 802 (287.4 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 196/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QPT L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 472 ALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 531
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 532 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 591
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S HRLL+TGT
Sbjct: 592 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 650
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 651 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 692
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 693 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 752
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 753 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRER 809
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 810 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 869
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 870 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 929
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 930 ERAKKKM 936
Score = 65 (27.9 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 23 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 81
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 82 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 136
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 137 PKRRGQRQLKKQEKW-KREPSEDEQEQGTSAESEAEQKKVKARR 179
Score = 52 (23.4 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRKR DSS + +E P++ R + N
Sbjct: 192 KKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKN 229
Score = 50 (22.7 bits), Expect = 4.5e-75, Sum P(3) = 4.5e-75
Identities = 31/131 (23%), Positives = 51/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 27 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 86
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 87 ASKKERIADVK----KMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 136
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 137 PKRRGQRQLKK 147
Score = 49 (22.3 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 178 RRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 237
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 238 FET----DSDDLIEMTGEGADEQQDNSETI 263
Score = 43 (20.2 bits), Expect = 2.4e-74, Sum P(3) = 2.4e-74
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 150 SFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ-LDSRNSVV 208
+ H + + SQS+ Q + + SS S E Q+E+ + S++ V
Sbjct: 19 NLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPV 78
Query: 209 NP 210
P
Sbjct: 79 LP 80
Score = 41 (19.5 bits), Expect = 8.2e-76, Sum P(3) = 8.2e-76
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 175 VKARRPVPRRTVPKPRVKKQ 194
Score = 39 (18.8 bits), Expect = 4.8e-74, Sum P(2) = 4.8e-74
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 57 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 107
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 802 (287.4 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 196/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QPT L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 482 ALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 541
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 542 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 601
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S HRLL+TGT
Sbjct: 602 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 660
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 661 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 702
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 703 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 762
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 763 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRER 819
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 820 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 879
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 880 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 939
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 940 ERAKKKM 946
Score = 65 (27.9 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 36 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 94
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 95 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 149
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 150 PKRRGQRQLKKQEKW-KREPSEDEQEQGTSAESEAEQKKVKARR 192
Score = 52 (23.4 bits), Expect = 2.1e-75, Sum P(2) = 2.1e-75
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRKR DSS + +E P++ R + N
Sbjct: 205 KKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKN 242
Score = 50 (22.7 bits), Expect = 4.6e-75, Sum P(3) = 4.6e-75
Identities = 31/131 (23%), Positives = 51/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 40 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 99
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 100 ASKKERIADVK----KMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 149
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 150 PKRRGQRQLKK 160
Score = 49 (22.3 bits), Expect = 1.2e-76, Sum P(3) = 1.2e-76
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 191 RRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 250
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 251 FET----DSDDLIEMTGEGADEQQDNSETI 276
Score = 43 (20.2 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 145 HRSSQ-SFD-----HESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENP 198
H SQ +FD H + + SQS+ Q + + SS S E Q+E+
Sbjct: 21 HAFSQLAFDGGKLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 80
Query: 199 QQ-LDSRNSVVNP 210
+ S++ V P
Sbjct: 81 SESAGSKSQPVLP 93
Score = 43 (20.2 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 550 GGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAES 609
GG S E S S + S P + H + + + + E+E +S + +S
Sbjct: 30 GGKLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGS-KS 88
Query: 610 QAFFTSASQQLESASTR 626
Q A ++ S R
Sbjct: 89 QPVLPEAKEKPASKKER 105
Score = 41 (19.5 bits), Expect = 8.5e-76, Sum P(3) = 8.5e-76
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 188 VKARRPVPRRTVPKPRVKKQ 207
Score = 39 (18.8 bits), Expect = 4.9e-74, Sum P(2) = 4.9e-74
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 70 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 120
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 729 (261.7 bits), Expect = 4.2e-76, Sum P(2) = 4.2e-76
Identities = 207/623 (33%), Positives = 315/623 (50%)
Query: 931 EAHKERLDEVFKIKRERWRGV-NKYVKEFHKRKERIH-REKIDRIQR---EKINLLKI-- 983
E KE D + IK + W + N + E +++ + +K+D ++ E LK
Sbjct: 306 EKSKEPGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNAS 365
Query: 984 -NDVEGYLRMVQDAKSDRVNKLLKETEKYL----QKLGSKLQE--AKSMASHFENEMDET 1036
DVE Y Q +D ++K + E+ + QK + L + K + +E
Sbjct: 366 PEDVEYY--NCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPY-SECSWE 422
Query: 1037 QTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCL---QGGKLRE 1093
+ +K++ ++ +Q+K + K L ++ +QP+ + +G +LR+
Sbjct: 423 DGALISKKFQTCIDEYFSRNQSKTTPFKDCKV-LKQRPRFVALKKQPSYIGGHEGLELRD 481
Query: 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX 1153
YQ++GL WL + + ILADEMGLGKT+Q I+ + YL GPF
Sbjct: 482 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 541
Query: 1154 GWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL---LTTYEYLMNKHDRPKL 1210
W+ EI WA +++ +VY G R + + +H + L + Y + D+ L
Sbjct: 542 SWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFL 601
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXX 1270
+ W +I +DE HR+KN L L ++S+HRLL+TGTP
Sbjct: 602 GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLH----- 656
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENE 1330
F E FS W + FE + LH+ L PF+LRR+K VE
Sbjct: 657 -FIMPEKFSSW--EDFEEEHGKGREYGYAS----------LHKELEPFLLRRVKKDVEKS 703
Query: 1331 LPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRSVH--NSVMELRNICNHPYLS 1386
LP K+E+++R E SA QK K + N ++ SKG + N +MEL+ CNH YL
Sbjct: 704 LPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 763
Query: 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
+ + + + L ++R GKL +LD+LL +L+ +RVL FS M R+LD++ +YL
Sbjct: 764 K-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYL 822
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
++Q+ + RLDG + G R +D FN S F FLLS RAGG+G+NL +ADTV+IFD+
Sbjct: 823 KYRQFPFQRLDG-SIGELRRQALDHFNAXGSEDFCFLLSTRAGGLGINLASADTVVIFDS 881
Query: 1507 DWNPQVDLQAQARAHRIGQKRDV 1529
DWNPQ DLQAQARAHRIGQK+ V
Sbjct: 882 DWNPQNDLQAQARAHRIGQKKQV 904
Score = 79 (32.9 bits), Expect = 4.2e-76, Sum P(2) = 4.2e-76
Identities = 40/158 (25%), Positives = 63/158 (39%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNGSGESSQSEDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSDSGSQSE 63
Query: 119 IEPFTSSRPPVA---PSGAGHDYYQAS----GTHRSS------QSFDHESPSSLDTRSAN 165
E TS V P G ++++++ RS+ Q + P+S ++ S
Sbjct: 64 SESDTSRENKVQAKPPKVDGAEFWKSNPSILAVQRSAMLRKQTQQPQQQRPASSNSGSEE 123
Query: 166 SQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDS 203
S D + KRK+ + + +P Q S
Sbjct: 124 DSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGS 161
Score = 72 (30.4 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 36/145 (24%), Positives = 59/145 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S ++ D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNGSGESSQSEDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSD 57
Query: 774 NGISLTTEQDEEDKSLHTDSPP---APKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQR 830
+G +E D ++ PP ++ S I+ +Q+ +L +Q QQ +QR
Sbjct: 58 SGSQSESESDTSRENKVQAKPPKVDGAEFWKSNPSILAVQRSAMLRKQT----QQPQQQR 113
Query: 831 MSTCFNKLKESVSSSEDISAKTKSV 855
++ + +E SSSED A + V
Sbjct: 114 PASSNSGSEEDSSSSEDSDASSSDV 138
Score = 68 (29.0 bits), Expect = 6.1e-75, Sum P(2) = 6.1e-75
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 130 APSGAGHDYYQASGTHRSS---QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG- 185
+PS +G D +SS D+E + + +R Q++ + K GKK ++KR
Sbjct: 155 SPSQSGSDSESEDERDKSSCDGTESDYEPKNKVKSRKP--QNRSKSKSGKKILGQKKRQI 212
Query: 186 DSSISHEPQN-ENPQQLDSRNSVVN 209
DSS + ++ +N ++ R + VN
Sbjct: 213 DSSEDEDDEDYDNDKRSSRRQATVN 237
Score = 65 (27.9 bits), Expect = 1.3e-74, Sum P(2) = 1.3e-74
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 107 SKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQS-FDHESPSSLDTRSAN 165
S +G +E + S E +S V + +Q SG+ SQS D ES D S +
Sbjct: 117 SNSG-SEEDSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESEDERDKSSCD 175
Query: 166 SQSQERQKDGKKASTK-RKRGDSSISHEPQNENPQQLDS 203
+ + K S K + R S + + +Q+DS
Sbjct: 176 GTESDYEPKNKVKSRKPQNRSKSKSGKKILGQKKRQIDS 214
Score = 55 (24.4 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 23/87 (26%), Positives = 34/87 (39%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ +G+ SSQS D +S S + S DG + + DS
Sbjct: 3 GHSDEESVRNGSGESSQSEDDSGSAS---GSGSGSSSGSSSDGSSSQSGSSDSDSGSDSG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVD 219
Q+E+ N V + K KVD
Sbjct: 60 SQSESESDTSRENKV----QAKPPKVD 82
Score = 43 (20.2 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL-SSANGVLASRGT 317
D +V N +S S E+ SASG G+S SS++G + G+
Sbjct: 6 DEESVRNGSGESSQS---EDDSGSASGSGSGSSSGSSSDGSSSQSGS 49
Score = 39 (18.8 bits), Expect = 7.0e-72, Sum P(2) = 7.0e-72
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSS 564
QS +D SA G G+ + G SS G ++DS S
Sbjct: 19 QSEDDSGSASGS-------GSGSSSGSSSDGSSSQSGSSDSDSGS 56
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 801 (287.0 bits), Expect = 5.8e-76, Sum P(4) = 5.8e-76
Identities = 193/487 (39%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QP L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 476 ALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 535
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP ++ +VY G R + + + +H + L
Sbjct: 536 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLK 595
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGT
Sbjct: 596 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 654
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 655 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 696
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 697 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 756
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + E+ + + L ++R GKL +LD+LL +L+
Sbjct: 757 G--FLNIVMELKKCCNHCYLIRA-PEDSERETGQEVLQSLIRSSGKLILLDKLLTRLRER 813
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 814 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 873
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 874 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 933
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 934 ERAKKKM 940
Score = 67 (28.6 bits), Expect = 5.8e-76, Sum P(4) = 5.8e-76
Identities = 34/164 (20%), Positives = 65/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 23 SASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 81
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 82 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 136
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + +P ++ +Q S S +K K +
Sbjct: 137 PKRRGQRQLKKQEKW-KQDPSEDDQEQGSSAESEAEQKKVKARR 179
Score = 63 (27.2 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER 171
A + + E S + S G D G+ +S S ES S ++ SA S+SQ
Sbjct: 19 ASSHSASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPV 78
Query: 172 QKDGK-KASTKRKR 184
+ K K ++K++R
Sbjct: 79 LPEAKEKPASKKER 92
Score = 51 (23.0 bits), Expect = 2.1e-74, Sum P(4) = 2.1e-74
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ-E 170
++ E S + SS + A Q+ S H S S+ + S+ SQS+ E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 171 RQKDGKKA 178
+ G K+
Sbjct: 68 SESAGSKS 75
Score = 49 (22.3 bits), Expect = 4.4e-74, Sum P(4) = 4.4e-74
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 13 SSLHSNASS--HSASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 70
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 71 AGSKSQPVLP 80
Score = 46 (21.3 bits), Expect = 5.8e-76, Sum P(4) = 5.8e-76
Identities = 29/127 (22%), Positives = 54/127 (42%)
Query: 946 ERWRGVNKYVKEFHKRKERIHR--EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNK 1003
ER G +Y+ ++ K IH E + +Q++K+ LK +E + + + K + K
Sbjct: 306 EREEGEIQYLIKW-KGWSYIHSTWESEESLQQQKVKGLK--KLENFKKKEDEIKQ-WLGK 361
Query: 1004 LLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
+ E +Y Q+ +AS + + V V+ + A+ D ++
Sbjct: 362 VSPEDVEYFN-----CQQ--ELASELNKQYQIVERVIAVKTSKSALGQTDFPAHSRKPAP 414
Query: 1064 SNEKYYL 1070
SNE YL
Sbjct: 415 SNEPEYL 421
Score = 44 (20.5 bits), Expect = 1.5e-73, Sum P(4) = 1.5e-73
Identities = 30/131 (22%), Positives = 50/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+AS + SQS + + S S + + S G S P+ E P
Sbjct: 27 EASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 86
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 87 ASKKERIADVK----KMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 136
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 137 PKRRGQRQLKK 147
Score = 44 (20.5 bits), Expect = 1.5e-73, Sum P(4) = 1.5e-73
Identities = 31/158 (19%), Positives = 61/158 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S+S + S P + H + + + + E+E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 601 MQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPM 660
+S + +SQ A ++ AS + +A + + + R+N + +P
Sbjct: 68 SESAGS-KSQPVLPEAKEK--PASKKERIADVKKMWEEYPDVYGVRRSNRSR----QEPS 120
Query: 661 NSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQ 698
I GS++ P+R + E K DP++
Sbjct: 121 RFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQ-DPSE 157
Score = 43 (20.2 bits), Expect = 2.1e-74, Sum P(4) = 2.1e-74
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ +SS + +E P++ R + N
Sbjct: 192 KKQPKIQRGKRKKQESSDDDDDDDEAPKRQTRRRAAKN 229
Score = 42 (19.8 bits), Expect = 5.8e-76, Sum P(4) = 5.8e-76
Identities = 24/105 (22%), Positives = 41/105 (39%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK Q +S + + R + K VS + D
Sbjct: 178 RRPIPRRTVPKPQVKKQPKIQRGKRKKQESSDDDDDDDEAPKRQTRRRAAKNVSYKEDDD 237
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTIP--VDNSV-RNGISL 778
+ D+ ++ T + + D S TI +D+ + + G+ L
Sbjct: 238 FET----DSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGVDL 278
Score = 40 (19.1 bits), Expect = 9.4e-76, Sum P(4) = 9.4e-76
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ +PRR +P P V+ +
Sbjct: 175 VKARRPIPRRTVPKPQVKKQ 194
Score = 40 (19.1 bits), Expect = 1.4e-73, Sum P(3) = 1.4e-73
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 7 KSQEEDSSLHSN---ASSHSASEEASASDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 64 SESESESAGSKSQPVL 79
Score = 39 (18.8 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 57 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 107
Score = 37 (18.1 bits), Expect = 7.9e-73, Sum P(4) = 7.9e-73
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 283 ASNSKFPEEVEVSASGQQ----QGNSLSSANG 310
AS+ EE S SG Q QG+ S +G
Sbjct: 19 ASSHSASEEASASDSGSQSESEQGSDPGSGHG 50
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 436 (158.5 bits), Expect = 8.1e-76, Sum P(3) = 8.1e-76
Identities = 137/434 (31%), Positives = 214/434 (49%)
Query: 957 EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKY-LQKL 1015
E KRKE++ +++ ++ K N +G ++ KS K ++ Y + ++
Sbjct: 91 EEQKRKEKLEKKREMMLKSAKGQ----NPADG-----KEEKSATKKKRGRDDGTYNISEI 141
Query: 1016 GSKLQEAKSMA--SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL----ESNEKYY 1069
SK +E S+A S EN+ DE+ ++ E +N D + K L + K +
Sbjct: 142 MSK-EEILSVAKKSKVENQ-DESSAGNLCP--EDLQKNGDSNSVIKDRLCQAVRHSAKQF 197
Query: 1070 L--MAHSIKESVS-EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV 1126
L + + V +QP GG +R YQ+ G+ WL L+ N +NGILADEMGLGKT+Q
Sbjct: 198 LDPVRKFNGQPVPFQQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQC 257
Query: 1127 IALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186
IA I ++E + GPF W SE + P I ++Y G +ERR+L ++
Sbjct: 258 IATIALMVE-RGVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRKIH 316
Query: 1187 VHQ---KFN-VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
Q K + V++T++E M DR L W Y+I+DEGHRIKN +C+L +LK + +
Sbjct: 317 GRQGSLKIHPVVITSFEIAMR--DRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNA 374
Query: 1243 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 1302
++LLLTGTP +F+ + F WF+ S + + D
Sbjct: 375 DNKLLLTGTPLQNNLAELWSLLNFLLPDVFDDLKSFESWFD--ITSITETAEDIIAKEKE 432
Query: 1303 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL----LMKRVEENL 1358
I++ LHQ+L PF+LRRLK V E+P K E +V + Q+ ++ R NL
Sbjct: 433 QN--ILHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVNRTIRNL 490
Query: 1359 GSIGNSKGRSVHNS 1372
+GN++ V S
Sbjct: 491 --LGNNEEEVVELS 502
Score = 429 (156.1 bits), Expect = 8.1e-76, Sum P(3) = 8.1e-76
Identities = 95/227 (41%), Positives = 138/227 (60%)
Query: 1329 NELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 1387
N P+ +E+L+ R + ++ + V + S N K + N +M LR CNHPYL +
Sbjct: 522 NGSPDDLEKLINRTQEEVVKERPVVEVSMPMDSEVNLK---LQNIMMLLRKCCNHPYLIE 578
Query: 1388 LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1447
+ +V+ GK +LDR+LP+LK H+VL FS MT +LD++ DY
Sbjct: 579 YPLDPATQQFKVD--EDLVKNSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCY 636
Query: 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507
+ +++ RLDG S DR + +FN D F+FL+S RAGG+G+NL AADTVII+D+D
Sbjct: 637 LRGFKFSRLDGSMSYSDREENMHQFNN-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSD 695
Query: 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAEHKL 1552
WNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+ KL
Sbjct: 696 WNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
Score = 39 (18.8 bits), Expect = 8.1e-76, Sum P(3) = 8.1e-76
Identities = 16/106 (15%), Positives = 43/106 (40%)
Query: 109 AGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQS 168
A LAE E + R + + + D + ++ Q +S ++ ++ ++
Sbjct: 28 AMLAEEEQLEAAGLEKERQMMEKARSAWDRESSEMRYKRLQHLLEKS--NIYSKFLLTKM 85
Query: 169 QERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGK 214
+++Q + +K K ++ + + +NP S ++G+
Sbjct: 86 EQQQLEEQKRKEKLEKKREMMLKSAKGQNPADGKEEKSATKKKRGR 131
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 799 (286.3 bits), Expect = 1.1e-75, Sum P(3) = 1.1e-75
Identities = 195/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QP L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 469 ALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFH 528
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 529 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 588
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGT
Sbjct: 589 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 647
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 648 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 689
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 690 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 749
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 750 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRER 806
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 807 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 866
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 926
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 927 ERAKKKM 933
Score = 63 (27.2 bits), Expect = 1.1e-75, Sum P(3) = 1.1e-75
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 23 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 81
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 82 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 136
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 137 PKRRGQRQLKKQEKW-KQEPSEDEQEQGTSAESEPEQKKVKARR 179
Score = 49 (22.3 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ DSS + +E P++ R + N
Sbjct: 192 KKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAKN 229
Score = 47 (21.6 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ-E 170
++ E S + SS + Q+ S H S S+ + S+ SQS+ E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 171 RQKDGKKA 178
+ G K+
Sbjct: 68 SESAGSKS 75
Score = 47 (21.6 bits), Expect = 5.2e-74, Sum P(3) = 5.2e-74
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 13 SSLHSNASS--HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 70
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 71 AGSKSQPVLP 80
Score = 45 (20.9 bits), Expect = 1.1e-75, Sum P(3) = 1.1e-75
Identities = 22/90 (24%), Positives = 33/90 (36%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + R + K VS + D
Sbjct: 178 RRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAKNVSYKEDDD 237
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 238 FET----DSDDLIEMTGEGVDEQQDNSETI 263
Score = 42 (19.8 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S S + S P + H + + + + E+E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 601 MQSQETAESQAFFTSASQQLESASTR 626
+S + +SQ A ++ S R
Sbjct: 68 SESAGS-KSQPVLPEAKEKPASKKER 92
Score = 41 (19.5 bits), Expect = 2.8e-75, Sum P(3) = 2.8e-75
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 175 VKARRPVPRRTVPKPRVKKQ 194
Score = 39 (18.8 bits), Expect = 1.0e-73, Sum P(2) = 1.0e-73
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 57 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 107
Score = 38 (18.4 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 7 KSQEEDSSLHSN---ASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 63
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 64 SESESESAGSKSQPVL 79
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 816 (292.3 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 204/556 (36%), Positives = 292/556 (52%)
Query: 1052 EDESDQ-AKHYLESNEKYYLMAHSIKESVSEQPTCLQG-G-KLREYQMSGLRWLVSLYNN 1108
ED+ D+ KHY EK +K+ +QP L+G G +L YQ+ G+ WL +
Sbjct: 691 EDDEDRPVKHYTPPPEK---PTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQ 747
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
++ ILADEMGLGKT+Q + + L + + RGPF WE E WAP +
Sbjct: 748 GIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYC 807
Query: 1169 IVYCGPPEERRRL------FKE------KI-----VHQKFNVLLTTYEYLMNKHDRPKLS 1211
I Y G + R + F+E K+ KFNVLLT+YE + D L
Sbjct: 808 ITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELI--SMDAACLG 865
Query: 1212 KIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXI 1271
I W +++DE HR+K+ K L Y +++LLLTGTP
Sbjct: 866 SIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDK 925
Query: 1272 FNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENEL 1331
FN + F F D S + + RLH++L P +LRRLK V +
Sbjct: 926 FNDLQAFQGEF-------ADVSKEEQ----------VKRLHEMLGPHMLRRLKTDVLKNM 968
Query: 1332 PEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGR---SVHNSVMELRNICNHPYLSQ 1387
P K E +VR E SA QK K + +N ++ + G S+ N +M+L+ CNHPYL
Sbjct: 969 PSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFP 1028
Query: 1388 LHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
AEE T Y + + + GKL +L ++L +LKA +HRVL FS MT++LD++ED+L
Sbjct: 1029 SAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL 1088
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506
+QY+Y R+DG +G R ID+FN + F+FLLS RAGG+G+NL ADTVII+D+
Sbjct: 1089 EGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDS 1148
Query: 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 1566
DWNP D+QA +RAHRIGQ V++ RF T +VEE+V A+ K+ + + + G
Sbjct: 1149 DWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGM--G 1206
Query: 1567 NTSAEDRREYLESLLR 1582
A ++ L+ +LR
Sbjct: 1207 GKGANFTKQELDDILR 1222
Score = 54 (24.1 bits), Expect = 1.3e-74, Sum P(4) = 1.3e-74
Identities = 39/195 (20%), Positives = 67/195 (34%)
Query: 117 SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
+K F S P + G ++G RS + E P RS+ S E+ D
Sbjct: 180 AKWREFCESNPHIQQEGGAAGSGGSAGQARSVTGDEPEEP-----RSSRSSRNEKPDDIY 234
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN--KVDAPGGFSVKGAEQSNF 234
+ + + + + +P+ + R GK+ K+ G K S+
Sbjct: 235 EEAVEEEEEEEEEEKKPRRKR----SGRGKKGRRPSGKVPTLKIKLLG----KRKRDSSD 286
Query: 235 NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
+ G E S L +L+ + + E P+ S+ NS P A + V
Sbjct: 287 EEQDASGASERDSDLE--FERMLQKSDDSADEKEAPV-SSKADNSAPAAQDDGSGAPVVR 343
Query: 295 SASGQQQGNSLSSAN 309
+ + GN N
Sbjct: 344 KKAKTKIGNKFKKKN 358
Score = 45 (20.9 bits), Expect = 1.9e-75, Sum P(3) = 1.9e-75
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 745 ASGMLRHTSQDDP---KFSDGSRTIPVDNSVRNGISLTTEQDEEDK 787
++G R + D+P + S SR D+ + E++EE+K
Sbjct: 204 SAGQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEEEEEEEEEEK 249
Score = 45 (20.9 bits), Expect = 1.9e-75, Sum P(3) = 1.9e-75
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDS 203
P++ + + + R+K GKK T RK + + + +N + DS
Sbjct: 37 PNNDEDDDYDPEDSRRKKKGKKRKT-RKGEEKGRKKKKRKKNESEEDS 83
Score = 42 (19.8 bits), Expect = 3.9e-75, Sum P(3) = 3.9e-75
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEK----YEPAVENEDESDQ 1057
G +A+S+ E E + S EK YE AVE E+E ++
Sbjct: 202 GGSAGQARSVTGD-EPEEPRSSRSSRNEKPDDIYEEAVEEEEEEEE 246
Score = 41 (19.5 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESD 1056
MAS EN+ + + E PA E ++SD
Sbjct: 1 MASEEENDDNFQEEEEAQEDNAPAAELSNDSD 32
Score = 38 (18.4 bits), Expect = 1.3e-74, Sum P(4) = 1.3e-74
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 782 QDEEDKSLHTDSPPAPKYTMSEK 804
+D+ED+ + +PP K T K
Sbjct: 691 EDDEDRPVKHYTPPPEKPTTDLK 713
Score = 37 (18.1 bits), Expect = 1.3e-74, Sum P(4) = 1.3e-74
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 543 ETDRIPPGGSSSGGFLEADSSSKEVEN 569
E D PP G S EAD + E E+
Sbjct: 407 ELDE-PPEGKWSCPHCEADGGAAEEED 432
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 789 (282.8 bits), Expect = 1.4e-75, Sum P(2) = 1.4e-75
Identities = 191/492 (38%), Positives = 270/492 (54%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
G +LREYQ+ GL WL+ + N+ N ILADEMGLGKT+Q I + Y + RGPF
Sbjct: 854 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLSGIRGPFLIIA 912
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE---KIVH--QKFNVLLT 1196
WE E W ++ +VY G R+ + F++ +IV +F ++T
Sbjct: 913 PLSTITNWEREFRTWTD-LNVVVYHGSMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIIT 971
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
T+E ++ P+L+ I+W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 972 TFEMILG--GCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNT 1029
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F + F Q F GD + + +L +L+
Sbjct: 1030 VEELFSLLHFLEPLRFPAESTFMQEF-------GDLKTEEQ----------VQKLQAILK 1072
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS----VHN 1371
P +LRRLK VE +L K E ++ E + QK + + E+N + G++ + N
Sbjct: 1073 PMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVN 1132
Query: 1372 SVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVRLCGKLEMLDRLLPKLK 1423
++MELR CNHPYL + E++ +T P +L +++ GKL ++D+LLPK+K
Sbjct: 1133 TMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLIDKLLPKMK 1192
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
A H+VL FS M R LD++EDYL K+Y Y R+DG G R A ID+F++ DS F+FL
Sbjct: 1193 AGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1252
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ-AQARAHRIGQKRDVLVLRFETVQTVEE 1542
L RAGG+G+NL AADT IIFD+DWNPQ DLQ AQAR HRIGQ + V V R T + E
Sbjct: 1253 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKVYRLITRNSYER 1312
Query: 1543 QVRASAEHKLGV 1554
++ A KLG+
Sbjct: 1313 EMFDRASLKLGL 1324
Score = 73 (30.8 bits), Expect = 1.4e-75, Sum P(2) = 1.4e-75
Identities = 58/269 (21%), Positives = 106/269 (39%)
Query: 104 VKDSKAGLAENEMSKI---EPFTSSRPPV-APSGAG-HDYYQA-SGTH---RSSQSFDHE 154
V+DS + + E+++ P T S V A S H ++ + S H RS +F +
Sbjct: 420 VQDSTSHVLEHDLEDHITPHPVTQSSDIVRAQSQTQIHPWHSSVSSQHLQDRSRVTFQGQ 479
Query: 155 SPSSLDTRSANS--QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRK 212
PSS T + S +SQ Q +RK+ DS E + E ++ S +
Sbjct: 480 PPSSKKTDGSGSHTKSQNTQVRAMSEKKQRKKADS----ESKQEKANRIISEAIAKAKER 535
Query: 213 GKMN--KVDAPGGF---SVKGAEQSNFNMVPSGGQ-MEHFSSLSGNMSSILRVKQEGQNV 266
G+ N +V +P F S +G E+ V S + E +G+ S + G+ +
Sbjct: 536 GERNIPRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKTKIGKLI 595
Query: 267 TEKPLDSANVSNSVPRASNSK-FPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN---- 321
+ S S++K P++ Q++ ++ A G Q+
Sbjct: 596 ITLGKKQKRKNESSDELSDAKQTPQKSLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEA 655
Query: 322 RAGFPFERSQVP---RFPGNMMIETPMQQ 347
+A +++ P P + +E P ++
Sbjct: 656 KASAKIKKNSAPLPAEQPLQLFVENPSEE 684
Score = 58 (25.5 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 28/98 (28%), Positives = 41/98 (41%)
Query: 762 GSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQ-KRKLLVEQNW 820
G R IP S N S++ E EE K S P K + K + K K + +
Sbjct: 536 GERNIPRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKTKIGKLI 595
Query: 821 IL--KQQKTKQRMSTCFNKLKESVSSS--EDISAKTKS 854
I K+QK K S + K++ S ++ S K +S
Sbjct: 596 ITLGKKQKRKNESSDELSDAKQTPQKSLKDEDSQKRRS 633
Score = 56 (24.8 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 27/85 (31%), Positives = 38/85 (44%)
Query: 353 LGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDG 412
L +N+F +H SS+P G SS LSPV S F + G S + +E +G
Sbjct: 328 LNSNSFQMLH-------SSHPQGNFSSSKLSPV-SISFPASAGS-ASQISHFTDPIESNG 378
Query: 413 SSNTLSDANRAVQVGRQNSVPGTAM 437
++ D N QV N P T +
Sbjct: 379 FTSL--DDNLLHQVDAPNE-PFTGL 400
Score = 37 (18.1 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 263 GQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQ 300
GQ+ +P D V+ S + P V ++ QQ
Sbjct: 186 GQDALSQPKDFMEVNVSTSHRVSVNHPPPVSNPSTSQQ 223
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 799 (286.3 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 195/487 (40%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QP L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 471 ALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 530
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 531 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 590
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGT
Sbjct: 591 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 649
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 650 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 691
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 692 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 751
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH YL + EE + + L ++R GKL +LD+LL +L+
Sbjct: 752 G--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRER 808
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 809 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 868
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 869 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 928
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 929 ERAKKKM 935
Score = 63 (27.2 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 35/164 (21%), Positives = 64/164 (39%)
Query: 55 SRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAEN 114
S + E + +G E+ + S GS+ SS + + S S+ S+ L E
Sbjct: 22 SASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPE- 80
Query: 115 EMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+K +P S + +A +Y G RS++S + PS + + S E
Sbjct: 81 --AKEKP-ASKKERIADVKKMWEEYPDVYGVRRSNRS--RQEPSRFNIKEEASSGSESGS 135
Query: 174 DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
++ + K+ + EP + +Q S S +K K +
Sbjct: 136 PKRRGQRQLKKQEKW-KREPSEDEQEQGTSAESEPEQKKVKARR 178
Score = 49 (22.3 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ DSS + +E P++ R + N
Sbjct: 191 KKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKN 228
Score = 48 (22.0 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 39/176 (22%), Positives = 65/176 (36%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S + + R + K VS + D
Sbjct: 177 RRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDDDEDDEAPKRQTRRRAAKNVSYKEDDD 236
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPA 796
+ D+ ++ T + + D S TI R G T ++ + P+
Sbjct: 237 FET----DSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPS 292
Query: 797 PKYTMSEKWIMDMQ---KRK--LLVEQNWILKQQKTKQRMSTCFNKLKESVSSSED 847
+ SEK ++Q K K + W ++ +Q++ KL E+ ED
Sbjct: 293 GDFD-SEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKG-LKKL-ENFKKKED 345
Score = 47 (21.6 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 112 AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ-E 170
++ E S + SS + Q+ S H S S+ + S+ SQS+ E
Sbjct: 7 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 66
Query: 171 RQKDGKKA 178
+ G K+
Sbjct: 67 SESAGSKS 74
Score = 47 (21.6 bits), Expect = 9.2e-74, Sum P(4) = 9.2e-74
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ- 200
S H ++ S H + + SQS+ Q + + SS S E Q+E+ +
Sbjct: 12 SSLHSNASS--HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESES 69
Query: 201 LDSRNSVVNP 210
S++ V P
Sbjct: 70 AGSKSQPVLP 79
Score = 42 (19.8 bits), Expect = 3.1e-73, Sum P(4) = 3.1e-73
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 541 ARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAE 600
++E D +SS E S S + S P + H + + + + E+E
Sbjct: 7 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 66
Query: 601 MQSQETAESQAFFTSASQQLESASTR 626
+S + +SQ A ++ S R
Sbjct: 67 SESAGS-KSQPVLPEAKEKPASKKER 91
Score = 41 (19.5 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 174 VKARRPVPRRTVPKPRVKKQ 193
Score = 39 (18.8 bits), Expect = 1.0e-73, Sum P(2) = 1.0e-73
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 56 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 106
Score = 38 (18.4 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKE 840
+ EED SLH++ A ++ SE+ + EQ + S+ + +
Sbjct: 6 KSQEEDSSLHSN---ASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQ 62
Query: 841 SVSSSEDISAKTKSVI 856
S S SE +K++ V+
Sbjct: 63 SESESESAGSKSQPVL 78
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 770 (276.1 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 185/486 (38%), Positives = 267/486 (54%)
Query: 1078 SVSEQPTCLQGGK---LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + G + LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 461 ALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 520
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WAP+++ +VY G R + + +H + L
Sbjct: 521 HEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRL 580
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 581 KFNILLTTYEILLK-DKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 639
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 640 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 681
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 682 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 741
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + ++ + + L ++R GKL +LD+LL +L+
Sbjct: 742 SGFLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 800
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 801 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 860
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE +
Sbjct: 861 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILE 920
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 921 RAKKKM 926
Score = 84 (34.6 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G E+ SGS G SS + GSSSQ DS++G S+
Sbjct: 8 ESVRNSSG---ESRSDDDSGSASGSGSGSSSGSSSDGSSSQSGS--SDSESGSESGSQSE 62
Query: 119 IEPFTS-SRPPVA---PSGAGHDYYQAS----GTHRSS---QSFDHESPSSLDTRSA-NS 166
E TS + V P G +++++S RS+ + + +S D+ S +S
Sbjct: 63 SESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDS 122
Query: 167 QSQERQKDGKKASTKRKR 184
S E D + TK+K+
Sbjct: 123 SSSEDSADDSSSETKKKK 140
Score = 84 (34.6 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 38/141 (26%), Positives = 60/141 (42%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS ++
Sbjct: 2 NGHSDEESVRNS-SGESRSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--ESGSE 56
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+G +E D + + P PK SE W L V+++ +LK+Q+ +Q+ ++
Sbjct: 57 SGSQSESESDTSREKKQVQAKP-PKADGSEFW--KSSPSILAVQRSAVLKKQQQQQKAAS 113
Query: 834 CFNKLKESVSSSEDISAKTKS 854
+ +E SSSED SA S
Sbjct: 114 SDSGSEEDSSSSED-SADDSS 133
Score = 78 (32.5 bits), Expect = 8.8e-75, Sum P(2) = 8.8e-75
Identities = 49/213 (23%), Positives = 86/213 (40%)
Query: 87 DSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY-QASGTH 145
DS + + + SS A D + + + K E + S + SG G D + G
Sbjct: 115 DSGSEEDSSSSEDSA----DDSSSETKKKKHKDEDWQMSGSG-SVSGTGSDSESEEDGDK 169
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG-DSSISHEPQNENPQQLDSR 204
S + + + +S S+ + K GKK++ ++KR DSS E +E+ + SR
Sbjct: 170 SSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEEEDDDEDYDKRGSR 229
Query: 205 NSV---VNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
V+ ++ + K D+ V G + VP + E F ++ M S R+ +
Sbjct: 230 RQATVNVSYKEAEETKTDSDDLLEVCGED------VPQTEEDE-FETIEKFMDS--RIGR 280
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
+G + + V P A K E E+
Sbjct: 281 KGATGASTTIYAVEVDGD-PNAGFEKSKELGEI 312
Score = 59 (25.8 bits), Expect = 8.8e-73, Sum P(2) = 8.8e-73
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 132 SGAGHDYYQAS-GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
SG+G +S G+ S S D ES S ++S + R+K K+ K + D S
Sbjct: 29 SGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREK--KQVQAKPPKADGS-- 84
Query: 191 HEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS 232
E +P L + S V ++ + K + S + + S
Sbjct: 85 -EFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDSSSS 125
Score = 57 (25.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 32/131 (24%), Positives = 51/131 (38%)
Query: 81 SGSQIG--DSSTAQCAGSSSQV-AGVVKDSKAGLAENEMSKIEPFTSSRPPV--APSGAG 135
S SQ G DS + +GS S+ + ++ K A+ + F S P + A
Sbjct: 42 SSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAV 101
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN 195
Q SS S E SS + SA+ S E +K K + G S+S +
Sbjct: 102 LKKQQQQQKAASSDSGSEEDSSSSED-SADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 160
Query: 196 ENPQQLDSRNS 206
++ ++S
Sbjct: 161 SESEEDGDKSS 171
Score = 55 (24.4 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 32/134 (23%), Positives = 54/134 (40%)
Query: 693 DNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHT 752
D+D G +SG+ S S S + SG+ S+ S D S +
Sbjct: 20 DDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESES-----DTSREKKQV 74
Query: 753 SQDDPKFSDGS---RTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
PK +DGS ++ P +V+ L +Q ++ K+ +DS + SE D
Sbjct: 75 QAKPPK-ADGSEFWKSSPSILAVQRSAVLKKQQQQQ-KAASSDSGSEEDSSSSEDSADDS 132
Query: 810 Q---KRKLLVEQNW 820
K+K +++W
Sbjct: 133 SSETKKKKHKDEDW 146
Score = 47 (21.6 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SG+ S S S SS D S+ S S + + + S D+S + P +
Sbjct: 23 SGSASGSGS-GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKA 81
Query: 202 D 202
D
Sbjct: 82 D 82
Score = 47 (21.6 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 38/157 (24%), Positives = 60/157 (38%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
ES S D+ SA S S G + + SS S E +E+ Q +S + +K
Sbjct: 16 ESRSDDDSGSA-SGSGSGSSSGSSSDGSSSQSGSSDS-ESGSESGSQSESESDTSREKKQ 73
Query: 214 KMNKVDAPGGFSVKGAEQSNFNMVPSG---GQMEHFSSLSGNMSSILRVKQEGQNVTEKP 270
K G + S + S Q + + S + S +E + +E
Sbjct: 74 VQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS-----EEDSSSSE-- 126
Query: 271 LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
DSA+ S+S + K E+ ++S SG G S
Sbjct: 127 -DSADDSSSETKKKKHK-DEDWQMSGSGSVSGTGSDS 161
Score = 43 (20.2 bits), Expect = 4.3e-71, Sum P(2) = 4.3e-71
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPAD-HSIHAEERKQL 592
GSSSG + SS + + +SG ++ S + E+KQ+
Sbjct: 32 GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQV 74
Score = 40 (19.1 bits), Expect = 8.9e-71, Sum P(2) = 8.9e-71
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 279 SVPRASNSKFPEEVEVSASGQQQGNSL-SSANGVLASRGT 317
SV +S ++ SASG G+S SS++G + G+
Sbjct: 9 SVRNSSGESRSDDDSGSASGSGSGSSSGSSSDGSSSQSGS 48
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 785 (281.4 bits), Expect = 2.2e-75, Sum P(2) = 2.2e-75
Identities = 221/649 (34%), Positives = 317/649 (48%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K + +
Sbjct: 261 EKDPRIS-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPDTGEEVT 318
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +P E E+ Q ++ E+ A + + +
Sbjct: 319 HYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIPPEIKHMER---PASESWQKLEKSR 375
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + GPF
Sbjct: 376 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPF 434
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF
Sbjct: 435 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQ 493
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KIQW ++IDE HR+KN +CKL LK H++LLTGTP
Sbjct: 494 VVITTFEMILA--DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 551
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 552 LQNSVEELFSLLNFLEPQQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 594
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + SKG + HN
Sbjct: 595 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--SKGANQHN 652
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ P L +++ GKL ++D+
Sbjct: 653 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDK 712
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 713 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 772
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 773 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 832
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 833 NSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME-VEDLLRK 880
Score = 58 (25.5 bits), Expect = 2.2e-75, Sum P(2) = 2.2e-75
Identities = 30/135 (22%), Positives = 59/135 (43%)
Query: 172 QKDGKKASTK---RKRGDSSISHEPQN--ENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV 226
Q+ G+KA+ + ++R + EP+ E +Q + + V + K + AP
Sbjct: 31 QEGGEKAAVEVKPKRRREPKEPKEPKKAKEPKKQKEPKQREVTKKARKPREPKAP----- 85
Query: 227 KGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNS 286
K + + P SS + + + K++G+ E P+DS ++ + S +
Sbjct: 86 KEPKDRKSSSEPGPRTRPKKSSKEQGPTPVEK-KKKGKRKNEIPVDSLDLDQDLLSPS-A 143
Query: 287 KFPEEVEVSASGQQQ 301
+ PEE SA Q++
Sbjct: 144 QSPEESAESADSQKR 158
Score = 42 (19.8 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 14/85 (16%), Positives = 32/85 (37%)
Query: 113 ENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQ 172
++ S EP +RP + G + + +S LD + +Q +
Sbjct: 89 KDRKSSSEPGPRTRPKKSSKEQGPTPVEKKKKGKRKNEIPVDS-LDLDQDLLSPSAQSPE 147
Query: 173 KDGKKASTKRKRGDSSISHEPQNEN 197
+ + A ++++R + NE+
Sbjct: 148 ESAESADSQKRRSGRQVKRRKYNED 172
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 794 (284.6 bits), Expect = 2.2e-75, Sum P(3) = 2.2e-75
Identities = 194/487 (39%), Positives = 267/487 (54%)
Query: 1078 SVSEQPTCLQGG--KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLME 1135
++ +QP L G +LR+YQ+ GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 451 ALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFH 510
Query: 1136 TKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL- 1194
GPF W+ E WAP I+ +VY G R + + + +H + L
Sbjct: 511 QHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLK 570
Query: 1195 ---LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
L T ++ K D+ L I W ++ +DE HR+KN L L ++S+HRLL+TGT
Sbjct: 571 FNALITTYEILLK-DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 629
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F EDF + K E NG S L
Sbjct: 630 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE-NGYQS-----------------L 671
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENL--GSIGNSK 1365
H+VL PF+LRR+K VE LP K+E+++R E SA Y K ++ R + L G+ G++
Sbjct: 672 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS 731
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
G N VMEL+ CNH +L + EE + + L ++R GKL +LD+LL +L+
Sbjct: 732 G--FLNIVMELKKCCNHCHLIK-PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRER 788
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S F FLLS
Sbjct: 789 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLS 848
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T TVEE++
Sbjct: 849 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 908
Query: 1546 ASAEHKL 1552
A+ K+
Sbjct: 909 ERAKKKM 915
Score = 61 (26.5 bits), Expect = 2.2e-75, Sum P(3) = 2.2e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK-KASTKRKR 184
S G D G+ +S S ES S ++ SA S+SQ + K K ++K++R
Sbjct: 19 SEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKER 72
Score = 58 (25.5 bits), Expect = 4.6e-75, Sum P(3) = 4.6e-75
Identities = 31/140 (22%), Positives = 51/140 (36%)
Query: 80 TSGSQIGDSSTAQCAGSSSQ-VAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDY 138
+ S+ S ++ AGS SQ V K+ A E ++ ++ P V +
Sbjct: 37 SESSESQSESESESAGSKSQPVLPEAKEKPASKKER-IADVKKMWEEYPDVYGVRRSNRS 95
Query: 139 YQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEP-QNEN 197
Q + S S R Q ++++K + S + SS EP Q
Sbjct: 96 RQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKRKWELSDDEQEQGSSAESEPEQTVK 155
Query: 198 PQQLDSRNSVVNPRKGKMNK 217
++ R +V PR K K
Sbjct: 156 ARRPVPRRTVPKPRVKKQPK 175
Score = 50 (22.7 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVN 209
+K K KRK+ DSS + +E P++ R + N
Sbjct: 171 KKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAAKN 208
Score = 50 (22.7 bits), Expect = 3.2e-74, Sum P(3) = 3.2e-74
Identities = 31/131 (23%), Positives = 51/131 (38%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ-NENP 198
+ASG+ SQS + + S S + + S G S P+ E P
Sbjct: 7 EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKP 66
Query: 199 QQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR 258
R + V KM + + P + V+ + +S PS ++ +S SG+ S
Sbjct: 67 ASKKERIADVK----KMWE-EYPDVYGVRRSNRSR--QEPSRFNIKEEAS-SGSESG--S 116
Query: 259 VKQEGQNVTEK 269
K+ GQ +K
Sbjct: 117 PKRRGQRQLKK 127
Score = 49 (22.3 bits), Expect = 2.2e-75, Sum P(3) = 2.2e-75
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 678 RRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQW-KPVSGTDSDR 736
RRP+P TV VK TQ +S ++ + R + K VS + D
Sbjct: 157 RRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAAKNVSYKEDDD 216
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDGSRTI 766
+ D+ ++ T + + D S TI
Sbjct: 217 FET----DSDDLIEMTGEGVDEQQDNSETI 242
Score = 46 (21.3 bits), Expect = 8.4e-74, Sum P(3) = 8.4e-74
Identities = 32/157 (20%), Positives = 60/157 (38%)
Query: 153 HESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ-LDSRNSVVNPR 211
H + + SQS+ Q + + SS S E Q+E+ + S++ V P
Sbjct: 2 HSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLP- 60
Query: 212 KGKMNKVDAPGGFSVKGAE-QSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKP 270
+ K + P + A+ + + P + S+ S S +K+E + +E
Sbjct: 61 EAK----EKPASKKERIADVKKMWEEYPDVYGVRR-SNRSRQEPSRFNIKEEASSGSESG 115
Query: 271 LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
+ + K+ E+S Q+QG+S S
Sbjct: 116 SPKRRGQRQLKKQEKRKW----ELSDDEQEQGSSAES 148
Score = 41 (19.5 bits), Expect = 1.5e-74, Sum P(3) = 1.5e-74
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 670 IGSQNEVPRRPLPAPTVQHE 689
+ ++ VPRR +P P V+ +
Sbjct: 154 VKARRPVPRRTVPKPRVKKQ 173
Score = 39 (18.8 bits), Expect = 3.4e-73, Sum P(2) = 3.4e-73
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
S+ E++S S E+ ++Q V K +PA + E +D K + E + Y
Sbjct: 37 SESSESQS-ESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 87
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 468 (169.8 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 121/376 (32%), Positives = 183/376 (48%)
Query: 1030 ENEMDETQ-TVSVVEKYEPAVENEDES-DQAKHYLESNEKYYLMAHSIKESVSEQPT-CL 1086
E E D+ + + E+ V ++E+ D K +E + + + + SV + P L
Sbjct: 635 ELEKDQVDNSAATFERAGDFVHTQNENRDDIKD-VEEDAETKVQEEQL--SVVDVPVPSL 691
Query: 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXX 1146
G LR YQ GL WL SLYNN NGILADEMGLGKT+Q I+L+ YL K + GP
Sbjct: 692 LRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIV 751
Query: 1147 XXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD 1206
WE E +AP + Y G P++R+ K F+V + +Y+ ++ D
Sbjct: 752 VPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQ--D 809
Query: 1207 RPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXX 1265
+ + +W Y+++DE H IKN S + A L ++ + RLLLTGTP
Sbjct: 810 QHSFKRKRWQYMVLDEAHNIKNFRSTRWQA-LLNFNTQRRLLLTGTPLQNNLAELWSLLY 868
Query: 1266 XXXXXI---------FNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
F + F QWF +P + + + + +LHQVLR
Sbjct: 869 FLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKT--VAKLHQVLR 926
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLL----MKRVEENLGSIGNSKGRSVHNS 1372
P++LRRLK VE ++P K E +V C+ S Q+ L M R + ++ + S+ N
Sbjct: 927 PYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTK-ATLASGNFMSIVNC 985
Query: 1373 VMELRNICNHPYLSQL 1388
+M+LR +CNHP L ++
Sbjct: 986 LMQLRKVCNHPNLFEV 1001
Score = 372 (136.0 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 80/176 (45%), Positives = 108/176 (61%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +LK HR L F+ MT++LDV+E +L + Y Y+RLDG T DR L
Sbjct: 1245 CGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQIL 1304
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
++FN DS +F+LS R+GG+G+NL ADTVI +D+DWNP +D Q Q R HRIGQ RD
Sbjct: 1305 TERFNT-DSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRD 1363
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAE-DRREYLESLLRE 1583
V + RF + T+E + A K + N I G F + ++ R+ L S L E
Sbjct: 1364 VHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPE 1419
Score = 74 (31.1 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 47/188 (25%), Positives = 81/188 (43%)
Query: 29 LATKLYVIL-----QHMKS-SGKEH-SMPYQVISRAMETVINQNGLDMEALKSSRLPLTS 81
+A K Y IL + +K GK+H S + ++ +E +NQ D + S
Sbjct: 423 MAEKAYRILRKDEEEQLKRIEGKQHLSKMLEKSTQLLEAQLNQVNDDGRSSTPSSDSNDV 482
Query: 82 GSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPF-TSSRPPVAPSGAGHDYYQ 140
S+ D + + SS + V D+ GL EN + E T + + ++
Sbjct: 483 LSESDDDMDDELSTSSDEDEEV--DADVGL-ENSPASTEATPTDESLNLIQLKEKYGHFN 539
Query: 141 ASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
S T S++ D + P+ LD ++S S+ G+++S SS +E QNEN ++
Sbjct: 540 GSSTVYDSRNKDEKFPT-LDKHESSS-SESSVMTGEESSIY-----SSSENESQNENDRE 592
Query: 201 LDSRNSVV 208
D + V
Sbjct: 593 SDDKTPSV 600
Score = 61 (26.5 bits), Expect = 4.9e-74, Sum P(4) = 4.9e-74
Identities = 32/143 (22%), Positives = 59/143 (41%)
Query: 929 EIEAHKERLDEVFKIK--RERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDV 986
E E HK+ L F ++ ++RW K + K +E ++I+ Q L K +
Sbjct: 401 EEERHKKSLAR-FAVQAVKKRWNMAEKAYRILRKDEEE-QLKRIEGKQHLSKMLEKSTQL 458
Query: 987 -EGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
E L V D R + ++ L + + + S +S + E+D V +
Sbjct: 459 LEAQLNQVND--DGRSSTPSSDSNDVLSESDDDMDDELSTSSDEDEEVD----ADVGLEN 512
Query: 1046 EPAVENEDESDQAKHYLESNEKY 1068
PA +D++ + ++ EKY
Sbjct: 513 SPASTEATPTDESLNLIQLKEKY 535
Score = 51 (23.0 bits), Expect = 4.9e-74, Sum P(4) = 4.9e-74
Identities = 31/129 (24%), Positives = 51/129 (39%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG---DSSISHEPQNENPQQLDS 203
S Q F E+ SL+ R +K T+R+R + +S E NE ++
Sbjct: 56 SFQKFLRETHLSLEERGEKFTDDVAKKGTNGDLTRRRRNLRTSTVVSSETTNEKKGDIEL 115
Query: 204 RNSVVNPRKGKMNKVDAPGGFSVKGAEQSNF-NMVPSGGQMEHFSSLSGNMSSILRVKQE 262
+ + P NK + K ++ SN ++VP ++H S L+ K E
Sbjct: 116 KLESIAPLV--RNKCEE---LKYKLSDHSNRKSIVPQKRPIQHLKKREAAKS--LKFKSE 168
Query: 263 GQNVTEKPL 271
+ E PL
Sbjct: 169 RK---ENPL 174
Score = 48 (22.0 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 998 SDRVNKLLKETEKYLQKLGSKLQE---AKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
S+ K L+ET L++ G K + K +T +VV E E + +
Sbjct: 54 SESFQKFLRETHLSLEERGEKFTDDVAKKGTNGDLTRRRRNLRTSTVVSS-ETTNEKKGD 112
Query: 1055 SD---QAKHYLESNE----KYYLMAHSIKESVSEQPTCLQGGKLRE 1093
+ ++ L N+ KY L HS ++S+ Q +Q K RE
Sbjct: 113 IELKLESIAPLVRNKCEELKYKLSDHSNRKSIVPQKRPIQHLKKRE 158
Score = 40 (19.1 bits), Expect = 6.8e-73, Sum P(4) = 6.8e-73
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 150 SFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE--NP 198
SF++ S D + S+E K+ K+K + H P+ NP
Sbjct: 208 SFENTSEHYSDNFYFTTSSEEEDIKKKRGRKKKKPRIKLVVHPPKQTITNP 258
Score = 39 (18.8 bits), Expect = 9.0e-28, Sum P(3) = 9.0e-28
Identities = 51/291 (17%), Positives = 111/291 (38%)
Query: 930 IEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGY 989
+E + + +DE ++ +G+ ++ K + + + I + + I K + + Y
Sbjct: 285 LEEYNKYIDEQRRLLSRLKKGIENGALKYDKETDSL--QPITSKEIKTIITYKPDPIS-Y 341
Query: 990 LRMVQDAK--SDR-VNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYE 1046
QD + +D +N+ + ++ + +++ AK ++ E V+ E+ +
Sbjct: 342 FYKQQDLQIHTDHLINQGIHMSKLFRSSTKARIARAKKVSQMIEQHFKH---VAGAEERK 398
Query: 1047 PAVENEDESDQAKHYLESNEKYYLMAHS----IKESVSEQPTCLQGGKLREYQMSGLRWL 1102
E + A+ +++ +K + MA +++ EQ ++G +++ L
Sbjct: 399 AKEEERHKKSLARFAVQAVKKRWNMAEKAYRILRKDEEEQLKRIEG---KQHLSKMLEKS 455
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFW 1162
L QLN + D G T + L E+ +D E + +
Sbjct: 456 TQLLEAQLNQVNDD--GRSSTPSSDSNDV-LSESDDD---MDDELSTSSDEDEEVDADVG 509
Query: 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSK 1212
P +E L + K + FN T Y+ NK ++ P L K
Sbjct: 510 LENSPASTEATPTDESLNLIQLKEKYGHFNGSSTVYDS-RNKDEKFPTLDK 559
Score = 37 (18.1 bits), Expect = 1.6e-71, Sum P(4) = 1.6e-71
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 391 STNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGT 435
ST D + S ++ + S+++ D VG +NS T
Sbjct: 473 STPSSDSNDVLSESDDDMDDELSTSSDEDEEVDADVGLENSPAST 517
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 770 (276.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 216/647 (33%), Positives = 330/647 (51%)
Query: 931 EAHKERLDEVFKIKRERWRGV-NKYVKEFHKRKERIH-REKIDRIQR---EKINLLKI-- 983
E +KE D + IK + W + N + E +++ + +K+D ++ E LK
Sbjct: 306 ERNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNAS 365
Query: 984 -NDVEGYLRMVQDAKSDRVNKLLKETEKYL----QKLGSKLQE--AKSMASHFENEMDET 1036
DVE Y Q +D ++K + E+ + QK + L + K + +E
Sbjct: 366 PEDVEYY--NCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPY-SECSWE 422
Query: 1037 QTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCL---QGGKLRE 1093
+ +K++ ++ +Q+K + K L ++ +QP+ + +G +LR+
Sbjct: 423 DGALISKKFQTCIDEYFSRNQSKTTPFKDCKV-LKQRPRFVALKKQPSYIGGHEGLELRD 481
Query: 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXX 1153
YQ++GL WL + + ILADEMGLGKT+Q I+ + YL GPF
Sbjct: 482 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 541
Query: 1154 GWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL----LTTYEYLMNKHDRPK 1209
W+ EI WA +++ +VY G R + + +H + L L T ++ K D+
Sbjct: 542 SWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLK-DKAF 600
Query: 1210 LSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXX 1269
L + W +I +DE HR+KN L L ++S+HRLL+TGTP
Sbjct: 601 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLH---- 656
Query: 1270 XIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVEN 1329
F E FS W + FE + LH+ L PF+LRR+K VE
Sbjct: 657 --FIMPEKFSSW--EDFEEEHGKGREYGYAS----------LHKELEPFLLRRVKKDVEK 702
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRSVH--NSVMELRNICNHPYL 1385
LP K+E+++R E SA QK K + N ++ SKG + N +MEL+ CNH YL
Sbjct: 703 SLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYL 762
Query: 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 1445
+ + + + L ++R GKL +LD+LL +L+ +RVL FS M R+LD++ +Y
Sbjct: 763 IK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEY 821
Query: 1446 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 1505
L ++Q+ + RLDG G R +D FN + S F FLLS RAGG+G+NL +ADTV+IFD
Sbjct: 822 LKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFD 881
Query: 1506 TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE + A+ K+
Sbjct: 882 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKM 928
Score = 81 (33.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 36/136 (26%), Positives = 54/136 (39%)
Query: 81 SGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVA---PSGAGHD 137
SGS G SS + GSSSQ DS +G S+ E TS V P G +
Sbjct: 28 SGSGSGSSSGSSSDGSSSQSGS--SDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAE 85
Query: 138 YYQAS----GTHRSS------QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDS 187
++++S RS+ Q + P+S ++ S S D + KRK+ +
Sbjct: 86 FWKSSPSILAVQRSAMLRKQPQQAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHND 145
Query: 188 SISHEPQNENPQQLDS 203
+ +P Q S
Sbjct: 146 EDWQMSGSGSPSQSGS 161
Score = 74 (31.1 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 106 DSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSS---QSFDHESPSSLDTR 162
DS +G A+ + E + S +PS +G D +SS D+E + + R
Sbjct: 133 DSSSG-AKRKKHNDEDWQMSGSG-SPSQSGSDSESEEERDKSSCDGTESDYEPKNKV--R 188
Query: 163 SANSQSQERQKDGKKASTKRKRG-DSSISHEPQN-ENPQQLDSRNSVVN 209
S Q++ + K+GKK ++KR DSS + ++ +N ++ R + VN
Sbjct: 189 SRKPQNRSKSKNGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVN 237
Score = 59 (25.8 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 34/137 (24%), Positives = 55/137 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S + D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNGSGESSQSGDDCGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSD 57
Query: 774 NGISLTTEQDEEDKSLHTDSPP---APKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQR 830
+G +E D ++ PP ++ S I+ +Q+ +L +Q QQ +QR
Sbjct: 58 SGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQ----PQQAQQQR 113
Query: 831 MSTCFNKLKESVSSSED 847
++ + +E SSSED
Sbjct: 114 PASSNSGSEEDSSSSED 130
Score = 52 (23.4 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 39/177 (22%), Positives = 68/177 (38%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ +G+ SSQS D +S S + S DG + + DS
Sbjct: 3 GHSDEESVRNGSGESSQSGDDCGSAS---GSGSGSSSGSSSDGSSSQSGSSDSDSGSDSG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDA-PGGFSVKGAEQSNF-NMVPSGGQMEHFSSLS 250
Q+E+ SR + V + K++ + S+ ++S P Q + S
Sbjct: 60 SQSESESDT-SRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQPQQAQQQR--PAS 116
Query: 251 GNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
N S +E + +E DS + S+ R ++ ++ S S Q G+ S
Sbjct: 117 SNSGS-----EEDSSSSE---DSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSES 165
Score = 50 (22.7 bits), Expect = 7.7e-72, Sum P(2) = 7.7e-72
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
S +G D ASG+ S S SS D S+ S S + S D+S +
Sbjct: 18 SQSGDDCGSASGSGSGSSS-----GSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSREN 72
Query: 192 EPQNENPQ 199
+ Q + P+
Sbjct: 73 KVQAKPPK 80
Score = 49 (22.3 bits), Expect = 9.8e-72, Sum P(2) = 9.8e-72
Identities = 22/102 (21%), Positives = 47/102 (46%)
Query: 126 RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG 185
RP + SG+ D + + SS + + D + + S S + ++ +R +
Sbjct: 113 RPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSESEEERDKS 172
Query: 186 --DSSIS-HEPQNE-NPQQLDSRNSVVNPRK--G-KMNKVDA 220
D + S +EP+N+ ++ +R+ N +K G K ++D+
Sbjct: 173 SCDGTESDYEPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDS 214
Score = 37 (18.1 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSS 564
QS +D SA G G+ + G SS G ++DS S
Sbjct: 19 QSGDDCGSASGS-------GSGSSSGSSSDGSSSQSGSSDSDSGS 56
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 482 (174.7 bits), Expect = 6.0e-75, Sum P(4) = 6.0e-75
Identities = 110/321 (34%), Positives = 161/321 (50%)
Query: 1068 YYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVI 1127
Y L +K + P L+G +LREYQ GL WLV++Y +LNGILADEMGLGKT+Q I
Sbjct: 599 YTLATTQVKTPI---PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTI 654
Query: 1128 ALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187
+L+ +L K + GP WE E+ W P + Y G +ER+ +
Sbjct: 655 SLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTK 714
Query: 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
F+V +T+Y+ ++ H + W Y+I+DE IKN + L ++ S RLL
Sbjct: 715 PNAFHVCITSYKLVLQDHQA--FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLL 772
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
LTGTP +F S +F +WF+ P + S + +
Sbjct: 773 LTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEG-------L 825
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL---MKRVEENLGSIGNS 1364
+ RLH+VLRPF+LRR+K VE ++P+K E ++RC S Q+ L ++
Sbjct: 826 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATG 885
Query: 1365 KGRSVHNSVMELRNICNHPYL 1385
SV N +M+LR +CNHP L
Sbjct: 886 HFMSVINILMQLRKVCNHPNL 906
Score = 398 (145.2 bits), Expect = 6.0e-75, Sum P(4) = 6.0e-75
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2102 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 1580
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2209
Score = 61 (26.5 bits), Expect = 6.0e-75, Sum P(4) = 6.0e-75
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 944 KRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ RW RGV + V R R+K +R +RE+ + LR + + V
Sbjct: 153 QERRWKRGVARKVVRMVIRHHEEQRQKEERARREE---------QAKLRRIASTMAKDVR 203
Query: 1003 KLLKETEKYLQ-KLGSKLQEA--KSMASHFENEMDETQTVS 1040
+ EK +Q K S+L+E K++ H + + +T+ S
Sbjct: 204 QFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYS 244
Score = 57 (25.1 bits), Expect = 1.6e-74, Sum P(4) = 1.6e-74
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 548 PPGGSSSGGFL-EADSSSKEVENLKMMDKSGPPA-DHSIHAEERKQLATGKLEAEMQSQE 605
P GSS E D++S + E ++ PP D S ++ + + + + + +E
Sbjct: 457 PGSGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEEDEHSEEEE 516
Query: 606 TAESQAFFTSASQQLESASTR 626
T+ S A S S++ E A ++
Sbjct: 517 TSGSSASEESESEESEDAQSQ 537
Score = 56 (24.8 bits), Expect = 2.0e-74, Sum P(4) = 2.0e-74
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 113 ENEMSKIEPFTSSRPPVAP-SGAGHDYYQASGTHRSSQS-----FDHESPSSLDTRSANS 166
E E+S E AP SG+ D + SS + E P D+ S +
Sbjct: 439 EGELSMEELLQQYAGAYAPGSGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSD 498
Query: 167 QSQERQKDGK-KASTKRKRGDSSISHEPQNENPQQLDSRN 205
++R +D + + S + + SS S E ++E + S++
Sbjct: 499 SVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQS 538
Score = 47 (21.6 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKD 174
++ + T SS S + ES S D +S SQ+ E ++D
Sbjct: 510 EHSEEEETSGSSASEESESEESEDAQS-QSQADEEEED 546
Score = 45 (20.9 bits), Expect = 2.8e-73, Sum P(4) = 2.8e-73
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 548 PP--GGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQE 605
PP SS +E S +E E+ + + SG A +EE + A + +A+ + +E
Sbjct: 488 PPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEESED-AQSQSQAD-EEEE 545
Query: 606 TAESQAFFTSASQQLESASTRGT 628
+ + A + +S + G+
Sbjct: 546 DDDFGVEYLLARDEEQSEADAGS 568
Score = 45 (20.9 bits), Expect = 3.1e-72, Sum P(5) = 3.1e-72
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ R+ R V ++ +E +++ER RE+ +++R + K DV + V+ +
Sbjct: 161 VARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAK--DVRQFWSNVEKVVQFKQQ 218
Query: 1003 KLLKETEK 1010
L+E K
Sbjct: 219 SRLEEKRK 226
Score = 44 (20.5 bits), Expect = 3.2e-27, Sum P(6) = 3.2e-27
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 339 MMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALS-PVESQL 389
+ I +P+ P SSL G MPI P+S P SS +S P+ S L
Sbjct: 1395 LTISSPLHVP--SSLP----GPASSPMPI-PNSSPLASPVSSTVSVPLSSSL 1439
Score = 41 (19.5 bits), Expect = 3.1e-72, Sum P(5) = 3.1e-72
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIK 1076
S+ +E ++ E+E +E++ + A E E++ D YL + ++ A +
Sbjct: 512 SEEEETSGSSASEESESEESEDA---QSQSQADEEEEDDDFGVEYLLARDEEQSEADAGS 568
Query: 1077 ESVSEQPTCL 1086
+ PT L
Sbjct: 569 GPPTPGPTTL 578
Score = 41 (19.5 bits), Expect = 3.2e-27, Sum P(6) = 3.2e-27
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1317 PFVLRRLKHKVENELPEKIERL 1338
PF L L+ K + + E++ER+
Sbjct: 1883 PFYLDSLEEKRKRQRSERLERI 1904
Score = 41 (19.5 bits), Expect = 4.1e-27, Sum P(6) = 4.1e-27
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 678 RRPLPAPTVQHELVK-DNDPTQFKSFGHSGAS 708
R P+P PT+ L+K + P+ S GA+
Sbjct: 1362 RAPMPTPTLVRPLLKLVHSPSPEVSASAPGAA 1393
Score = 40 (19.1 bits), Expect = 9.3e-73, Sum P(4) = 9.3e-73
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG 222
S +S+ ++ + +S G PQ ++ Q DS + + ++ +
Sbjct: 459 SGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETS 518
Query: 223 GFSVKGAEQS 232
G S +S
Sbjct: 519 GSSASEESES 528
Score = 40 (19.1 bits), Expect = 4.1e-27, Sum P(6) = 4.1e-27
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 525 PSSAPGVT-APYGRLGNARETDRIPP 549
PSS P T AP G L +++PP
Sbjct: 1276 PSSTPSTTPAPTG-LSLPLAANQVPP 1300
Score = 38 (18.4 bits), Expect = 3.2e-27, Sum P(6) = 3.2e-27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 412 GSSNTLSDANRAVQVGRQNSVPGTAM 437
G++ L+ + V V +S PGT++
Sbjct: 1617 GAAPVLASSQTPVPVMAPSSTPGTSL 1642
Score = 38 (18.4 bits), Expect = 3.2e-27, Sum P(6) = 3.2e-27
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYT 800
+ G+ +PV R L +DE D PP+P T
Sbjct: 1827 ASGAAPLPVTMVSR----LPVSKDEPDTLTLRSGPPSPPST 1863
Score = 37 (18.1 bits), Expect = 6.0e-75, Sum P(4) = 6.0e-75
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1392 EVDTLIPKHYL 1402
E DT +P+H L
Sbjct: 959 EADTFLPRHRL 969
Score = 37 (18.1 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 116 MSKIEPFTSSRPPVAPSGA 134
++ + P P +APSGA
Sbjct: 1480 LAPVVPAAPGPPSLAPSGA 1498
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 796 (285.3 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 223/661 (33%), Positives = 335/661 (50%)
Query: 955 VKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
V++ K K RI ++KI R + ++ ++++E L + DR+ + T+ +
Sbjct: 836 VEDLEKDK-RI-QQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP 893
Query: 1015 LGSKLQEAKSMA---SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLM 1071
+ L + S+ S +E D Q + +E++E + E E+++ + + K
Sbjct: 894 VTHYLVKWCSLPYEDSTWELRQDIDQ--AKIEEFEKLMSREPETERVERPPADDWKK--- 948
Query: 1072 AHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC 1131
ES E KLREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I +
Sbjct: 949 ----SESSREYKN---NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL- 1000
Query: 1132 YLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE- 1184
Y + K GPF WE E W ++ +VY G RR + FK+
Sbjct: 1001 YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDP 1059
Query: 1185 --KIVH--QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
+++ KF+ ++TT+E ++ D P+L I W ++IDE HR+KN +CKL LK
Sbjct: 1060 QGRVIKGSYKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMM 1117
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H++LLTGTP F S F Q F GD +
Sbjct: 1118 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF-------GDLKTEEQ--- 1167
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG 1359
+ +L +L+P +LRRLK VE L K E ++ E + QK + + E+N
Sbjct: 1168 -------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1220
Query: 1360 SIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVR 1407
+ G++ + N++MELR CNHPYL E++ +T P L +++
Sbjct: 1221 FLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQ 1280
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A
Sbjct: 1281 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQA 1340
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--DLQAQARAHRIGQ 1525
ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNP++ QAQAR HRIGQ
Sbjct: 1341 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQ 1400
Query: 1526 KRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLR 1582
+ V + R T + E ++ A KLG+ QS++ N + ++ +E LLR
Sbjct: 1401 SKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLR 1460
Query: 1583 E 1583
+
Sbjct: 1461 K 1461
Score = 60 (26.2 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 28/97 (28%), Positives = 38/97 (39%)
Query: 751 HTSQDDPKFSDGSRTIP--VDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
H +DP S G +P VD N SL Q+E+ K + PK K +
Sbjct: 598 HIVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKKKRPKAKKDPKEPKDPKEKKE 657
Query: 809 MQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSS 845
++ K I K+ K K + T K K S SS
Sbjct: 658 PKEPKTPKAPK-IPKEPKEK-KAKTATPKPKSSKKSS 692
Score = 59 (25.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 47/234 (20%), Positives = 90/234 (38%)
Query: 1 MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60
++ PN +++ +L + Q + + K V KS GK+ +P V ++ +
Sbjct: 566 VSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKSFGKD-DVPGGVDTQEL-- 622
Query: 61 VINQNGLD--MEALKSSRLPLTSGS--QIGDSSTAQ--CAGSSSQVAGVVKDSKAGLAEN 114
N+N LD E K + P + D + + + + K+ K A+
Sbjct: 623 --NRNSLDGSQEEKKKKKRPKAKKDPKEPKDPKEKKEPKEPKTPKAPKIPKEPKEKKAKT 680
Query: 115 EMSKIEPF--TSSRPPVAPSGAGHDYYQASGTHRSSQS-FDHESPSSLDTRSANSQSQER 171
K + +S++ P + + A T S S D P S ++
Sbjct: 681 ATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEDDEDPGVQK 740
Query: 172 QKDGKKASTKRKRGDSSISHEPQNENPQQLDS--RNSVVNPRKGKMNK-VDAPG 222
++ ++ KRKR + + +E P D+ R+S N + + + VDA G
Sbjct: 741 RRSSRQV--KRKRYTEDLEFKISDEEPDDADAAGRDSPSNTSQSEQQESVDAEG 792
Score = 44 (20.5 bits), Expect = 7.7e-72, Sum P(3) = 7.7e-72
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 544 TDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEE-RKQLATGKLEAEMQ 602
+D P ++G ++ S++ + E + +D GP + + + +KQ +G+ E E++
Sbjct: 761 SDEEPDDADAAGR--DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGE-EVEVE 817
Score = 42 (19.8 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 124 SSRPPVAPSGAGHDYYQASGTHRSSQ--SFDHESPSSLDTRSANSQSQERQKD 174
S P AG D S T +S Q S D E P + + +S+S ++QK+
Sbjct: 761 SDEEPDDADAAGRD--SPSNTSQSEQQESVDAEGP--VVEKIMSSRSVKKQKE 809
Score = 42 (19.8 bits), Expect = 7.7e-72, Sum P(3) = 7.7e-72
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+++ + T KP S SN P + S ++V G+ +G+ S
Sbjct: 675 EKKAKTATPKPKSSKKSSNKKPDSEASALKKKVN---KGKTEGSENS 718
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 764 (274.0 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
Identities = 247/855 (28%), Positives = 396/855 (46%)
Query: 730 SGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSL 789
SG++ D S D+S ++ D + P ++G +E++E DKS
Sbjct: 118 SGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPS----QSGSDSESEEEERDKSS 173
Query: 790 --HTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSED 847
T+S PK + + + K K IL Q+K +++ + + E ++
Sbjct: 174 CDETESDYEPKNKVKSRKPQNRSKAK---NGKKILGQKK--RQIDSSEEEDDEEDYDNDK 228
Query: 848 ISAKTKSVIEXXXXXXXXXXXXXXNDFLN----DFFKPITTDMDRLKSYKKHRHGRRIKQ 903
S++ ++ + +D L D +P + + ++ + R GR+
Sbjct: 229 RSSRRQATVNVSYKEDEEMKTDS-DDLLEVCGEDVPQPEEEEFETIERFMDCRIGRK--- 284
Query: 904 LXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKRERWRGV-NKYVKEFHKRK 962
F E +KE + + IK + W + N + E ++
Sbjct: 285 -GATGATTTIYAVEADGDPNAGF----EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQ 339
Query: 963 ERIH-REKIDRIQR---EKINLLKI---NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
+ + +K+D ++ E LK DVE Y Q +D ++K + E+ +
Sbjct: 340 QNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYY--NCQQELTDDLHKQYQIVERIIAHS 397
Query: 1016 GSKLQEAKSMASHF-------ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
K A ++ +E + +K++ ++ +Q+K + K
Sbjct: 398 NQK--SAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKV 455
Query: 1069 YLMAHSIKESVSEQPTCLQGGK---LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQ 1125
L ++ +QP+ + G + LR+YQ++GL WL + + ILADEMGLGKT+Q
Sbjct: 456 -LKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQ 514
Query: 1126 VIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185
I+ + YL GPF W+ EI WA +++ +VY G R + +
Sbjct: 515 TISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHE 574
Query: 1186 IVHQKFNVL----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241
+H + L L T ++ K D+ L + W +I +DE HR+KN L L ++
Sbjct: 575 WMHPQTKRLKFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFK 633
Query: 1242 SSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXX 1301
S+HRLL+TGTP F E FS W + FE +
Sbjct: 634 SNHRLLITGTPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS- 684
Query: 1302 XXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGS 1360
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N +
Sbjct: 685 ---------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKA 735
Query: 1361 IGN-SKGRSVH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 1417
+ SKG + N +MEL+ CNH YL + + + + L ++R GKL +LD+
Sbjct: 736 LSKGSKGSTSGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDK 794
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LL +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 795 LLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGS 854
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 855 EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTK 914
Query: 1538 QTVEEQVRASAEHKL 1552
+VEE + A+ K+
Sbjct: 915 GSVEEDILERAKKKM 929
Score = 83 (34.3 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
Identities = 44/186 (23%), Positives = 70/186 (37%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNSSGESSQSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSE 63
Query: 119 IEPFTSSRPPVA---PSGAGHDYYQAS----GTHRSS-----QSFDHESPSSLDTRSANS 166
E TS V P G +++++S RS+ Q + P+S ++ S
Sbjct: 64 SESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHPASSNSGSEED 123
Query: 167 QSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV 226
S D KRK+ + +P Q S + + K + + +
Sbjct: 124 SSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEERDKSSCDETESDYEP 183
Query: 227 KGAEQS 232
K +S
Sbjct: 184 KNKVKS 189
Score = 65 (27.9 bits), Expect = 9.1e-73, Sum P(2) = 9.1e-73
Identities = 46/208 (22%), Positives = 83/208 (39%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ + + SSQS D +S S+ + S +S DG + + DS
Sbjct: 3 GHSDEESVRNSSGESSQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
Q+E+ SR + V + K++ + S+ ++S Q +H S
Sbjct: 60 SQSESESDT-SRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQH--PASS 116
Query: 252 NMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQ-QQGNSLSSANG 310
N S +E + +E DS + SN V R + E+ ++S SG Q S S +
Sbjct: 117 NSGS-----EEDSSSSE---DSDDSSNEVKRKKHKD--EDWQMSGSGSPSQSGSDSESEE 166
Query: 311 VLASRGTWNQNRAGFPFERSQVPRFPGN 338
+ + ++ + + + R P N
Sbjct: 167 EERDKSSCDETESDYEPKNKVKSRKPQN 194
Score = 52 (23.4 bits), Expect = 2.1e-71, Sum P(2) = 2.1e-71
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQT 454
DE S SSG+ + D S + S + G +S G++ + D+G S SQ+
Sbjct: 6 DEESVRNSSGESSQSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSDSGSESGSQS 62
Score = 40 (19.1 bits), Expect = 3.9e-70, Sum P(2) = 3.9e-70
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK 565
QS +D SA G G+ + G SS G ++DS S+
Sbjct: 19 QSDDDSGSASGS-------GSGSSSGSSSDGSSSQSGSSDSDSGSE 57
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 487 (176.5 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 145/485 (29%), Positives = 236/485 (48%)
Query: 942 KIKRERWRGVNKYV-KEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMV------Q 994
K +RE R + K + KE ++ ++ EK + Q +K+N L + E Y +
Sbjct: 545 KNEREE-RDLKKKIEKEAMEQAKKEEEEKESKRQAKKLNFL-LTQTELYSHFIGRKIKTN 602
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN--- 1051
+ + + V+ E++K + + A F+NE DE + E A+
Sbjct: 603 ELEGNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRA 662
Query: 1052 -----EDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLY 1106
+D ++ + E +E + S+ E EQP L L+EYQ+ GL WL +LY
Sbjct: 663 KAKQFDDHANAHEEEEEEDELNFQNPTSLGEITIEQPKIL-ACTLKEYQLKGLNWLANLY 721
Query: 1107 NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRI 1166
+ +NGILADEMGLGKTVQ I+++ +L E N GPF W +EI+ + P+
Sbjct: 722 DQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQF 781
Query: 1167 HKIVYCGPPEERR--RLF--KEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYII 1219
+ Y G +R+ R F ++ + + K F+V++T+Y+ ++ D L K++W Y+I
Sbjct: 782 KILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVT--DANYLQKMKWQYMI 839
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
+DE IK++ +L + +RLLLTGTP +F+S ++F+
Sbjct: 840 LDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFN 899
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+WF+K ES+ + + + RLH +L+PF+LRR+K V++EL +KIE V
Sbjct: 900 EWFSKDIESHAEANTKLNQQQ-------LRRLHMILKPFMLRRVKKNVQSELGDKIEIDV 952
Query: 1340 RCE-----ASAYQKLLMKRVEENLGSIGN-----SKGRSVHNS---------VMELRNIC 1380
C+ A YQ +L ++ N +I N S S NS VM+ R +C
Sbjct: 953 LCDLTQRQAKLYQ-VLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVC 1011
Query: 1381 NHPYL 1385
NHP L
Sbjct: 1012 NHPDL 1016
Score = 372 (136.0 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 73/141 (51%), Positives = 99/141 (70%)
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
KL LD LL KLK+ HRVL + MT+++D+ME+YLT++QY ++RLDG + DR L+
Sbjct: 1300 KLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVH 1359
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
+ Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA RAHR+GQ R V
Sbjct: 1360 DW-QTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVT 1418
Query: 1531 VLRFETVQTVEEQVRASAEHK 1551
V R T+EE++R A+ K
Sbjct: 1419 VYRLLVRGTIEERMRDRAKQK 1439
Score = 60 (26.2 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 32/144 (22%), Positives = 58/144 (40%)
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
+S +S + SSL R A + K K T+ +RG +S+ + ++ D +
Sbjct: 496 QSIRSTNFRKTSSLCAREAKKWQSKNFKQIKDFQTRARRGIREMSNFWKKNEREERDLKK 555
Query: 206 SVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQN 265
+ + K + S + A++ NF + Q E +S G I + EG N
Sbjct: 556 KIEKEAMEQAKKEEEEKE-SKRQAKKLNFLLT----QTELYSHFIGR--KIKTNELEGNN 608
Query: 266 VTEKPLDSA-NVSNSVPRASNSKF 288
V+ +S N+ S + + F
Sbjct: 609 VSSNDSESQKNIDISALAPNKNDF 632
Score = 47 (21.6 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 17/101 (16%), Positives = 45/101 (44%)
Query: 751 HTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQ 810
+ +D+ +D DN N ++ D+E+++ D + E+ +
Sbjct: 220 NNGEDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEEIEDLDEEDFAAFE 279
Query: 811 KRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAK 851
++ ++++ +K ++R S+ + K S++S I++K
Sbjct: 280 EQDDNDDEDFNPDVEKRRKRSSSSSSSTKLSMNSLSLITSK 320
Score = 47 (21.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRN 205
FD+E+ L R+A + S + KA ++ D + +HE + E +L+ +N
Sbjct: 637 FDNENDEQLRLRAAENASNALAETRAKA---KQFDDHANAHEEEEEE-DELNFQN 687
Score = 45 (20.9 bits), Expect = 5.2e-28, Sum P(3) = 5.2e-28
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 1321 RRLKHKVENELPEKIERLVRCEASAYQ--KLLMKRVEENLGSIGNSKGRSVHNSVMELRN 1378
R LK K+E E E+ ++ + S Q KL + L S + GR + + +E N
Sbjct: 551 RDLKKKIEKEAMEQAKKEEEEKESKRQAKKLNFLLTQTELYS--HFIGRKIKTNELEGNN 608
Query: 1379 ICNHPYLSQLHAEEVDTLIP 1398
+ ++ SQ + + + L P
Sbjct: 609 VSSNDSESQKNID-ISALAP 627
Score = 44 (20.5 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 25/109 (22%), Positives = 41/109 (37%)
Query: 176 KKASTKRKRGDS-SISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNF 234
+ A+T +S S S QN + R +P + VD+P F+ G S
Sbjct: 979 ENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADVDSPFSFTTFGKTTSML 1038
Query: 235 NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSAN-VSNSVPR 282
+ S+ + N+SS+ T+ S N + S+PR
Sbjct: 1039 TASVANNNSSVISNSNMNLSSMSSNNISNGKFTDLIYSSRNPIKYSLPR 1087
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 782 (280.3 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 729 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 788
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 789 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 848
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 849 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 906
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 907 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 949
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 950 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1009
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1010 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1069
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1070 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFL 1129
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1130 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1189
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1190 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1226
Score = 63 (27.2 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 37 LQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-SSTAQCA 94
++H+ S H++ Y+ S+ M +I + + S++ G++ + S+
Sbjct: 143 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPMSKMMTILGAKWREFSANNPFK 199
Query: 95 GSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
GS++ VA + A +AE ++ SS P+APSG
Sbjct: 200 GSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 234
Score = 58 (25.5 bits), Expect = 7.4e-74, Sum P(3) = 7.4e-74
Identities = 36/160 (22%), Positives = 59/160 (36%)
Query: 110 GLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ 169
G E S PF S VA + A A + S +PS T +
Sbjct: 186 GAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPTLPPPPAAD 245
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN-KVDAPGGFSVKG 228
+ ++A TK +G H+ ++++P+ D R + + + K+ GG KG
Sbjct: 246 IQPPPIRRAKTKEGKGPG---HKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKG 302
Query: 229 AE---QSNFNMVPSGGQMEHFS----SLSGNMSSILRVKQ 261
QS+ P + + S S SG +R K+
Sbjct: 303 GSYVLQSDEGPEPEAEESDLDSGSVHSASGRPDGPIRTKK 342
Score = 53 (23.7 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 580 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 618
Score = 46 (21.3 bits), Expect = 1.2e-73, Sum P(3) = 1.2e-73
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
E K H E E + + E YE E E E ++ ++E
Sbjct: 411 EGKWSCPHCEKEGVQWEAKEEEEDYEEEGEEEGEKEEEDDHME 453
Score = 45 (20.9 bits), Expect = 1.0e-71, Sum P(4) = 1.0e-71
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVE 987
SE E ER DE ++ K E G ++Y +++ R HREK + +K K + E
Sbjct: 69 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREK----KEKKTKRRKKGEGE 120
Query: 988 GYLRMVQDAKS 998
G + V+ S
Sbjct: 121 GGQKQVEQKSS 131
Score = 43 (20.2 bits), Expect = 1.6e-71, Sum P(4) = 1.6e-71
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGH 704
+ A A+ + + +++ ++S T I P PA +Q ++ + K GH
Sbjct: 205 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPTLPPPPAADIQPPPIRRAKTKEGKGPGH 264
Query: 705 SGAS 708
S
Sbjct: 265 KRRS 268
Score = 40 (19.1 bits), Expect = 1.0e-71, Sum P(4) = 1.0e-71
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 185 GDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAP 221
GD S+ + P L + P+K K NK P
Sbjct: 25 GDRSLDKDDIRLLPSALGVKKRKRGPKKQKENKPGKP 61
Score = 38 (18.4 bits), Expect = 5.4e-71, Sum P(4) = 5.4e-71
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 335 FPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPT 374
F G+ +++ V A PI PS PT
Sbjct: 198 FKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPT 237
Score = 37 (18.1 bits), Expect = 3.4e-71, Sum P(4) = 3.4e-71
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR-KRGD 186
D + G+ R ES S + + + ++ K+ TKR K+G+
Sbjct: 68 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE 118
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 475 (172.3 bits), Expect = 2.9e-74, Sum P(4) = 2.9e-74
Identities = 117/325 (36%), Positives = 163/325 (50%)
Query: 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXX 1148
G LREYQ GL WL LY+N +NGILADEMGLGKT+Q IAL+ +L GP
Sbjct: 823 GTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVP 882
Query: 1149 XXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP 1208
WE E W P + Y G EERR+ + + +NVL+T+Y+ ++ D+
Sbjct: 883 TSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQ--DQQ 940
Query: 1209 KLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXX----- 1263
L + WHY+I+DE H IKN + L +++ RLLLTGTP
Sbjct: 941 VLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLM 1000
Query: 1264 -XXXXXXXI--FNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
I F +FS+WF +P E ++ + ++ +LH VLRP++L
Sbjct: 1001 PTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQ---VVTKLHTVLRPYIL 1057
Query: 1321 RRLKHKVENELPEKIERLVRCEASAYQKLL----MKRVE--ENLGSIGNSKGRSVHNSVM 1374
RRLK VE ++P K E +V C S Q+ L M R + E L S GN S+ N +M
Sbjct: 1058 RRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETLAS-GNYL--SIINCLM 1114
Query: 1375 ELRNICNHPYLSQLHAEEVDTLIPK 1399
+LR +CNHP L + +P+
Sbjct: 1115 QLRKVCNHPDLFETRPISTSFAMPR 1139
Score = 372 (136.0 bits), Expect = 2.9e-74, Sum P(4) = 2.9e-74
Identities = 76/156 (48%), Positives = 98/156 (62%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ LD+LL LKA HR L F+ MT++LDV+E +L +RYLRLDG T R L
Sbjct: 1372 CGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQIL 1431
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
D+FN D+ F+LS R+GG+G+NL ADTVI +D DWNP +D Q Q R HRIGQ RD
Sbjct: 1432 TDRFNN-DNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRD 1490
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
V + RF + T+E + A K + + I G F
Sbjct: 1491 VHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEF 1526
Score = 58 (25.5 bits), Expect = 2.9e-74, Sum P(4) = 2.9e-74
Identities = 30/147 (20%), Positives = 64/147 (43%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVE- 987
E AH++ + E WR NK ++ + ++ R K ++ ++ + ++ E
Sbjct: 359 EHRAHRQAAKSLAAACAEVWRKRNKDPEDILREQQEEMRGKRKQLAKDLKKMFELARAEI 418
Query: 988 GYLRMV-----QDAKSDR-VNKLLKETEKYLQKLGSK-LQEAKSMASHFENEMDETQTVS 1040
+R+ Q AK R +++ +K++ +K + L E S A + +E +T
Sbjct: 419 DRVRLARWEEEQKAKDQRALDRAIKQSTMLFEKRRLEILGETGSDAPETTTDDEEVET-- 476
Query: 1041 VVEKYEPAVENEDESDQAKHYLESNEK 1067
+ EN+DE ++ E+ E+
Sbjct: 477 -----DNGSENDDEEGESNMSTETEEE 498
Score = 52 (23.4 bits), Expect = 2.9e-74, Sum P(4) = 2.9e-74
Identities = 25/103 (24%), Positives = 41/103 (39%)
Query: 338 NMMIETPM-QQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGS---SALSPVESQLFSTN 393
N + +P+ P+ S + + V A+ PS+ G +G + SPV + +
Sbjct: 137 NAAVSSPLPMSPSRSGINRRSLAGV--AVNGSPSTTAKGSIGRRRRESPSPVSKRASTRT 194
Query: 394 RGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTA 436
R D A S V S+ T S R+ Q+ + TA
Sbjct: 195 RPDNMDAYHPSNGVTPRSNSTKTRS--TRSFQLASSDFREETA 235
Score = 48 (22.0 bits), Expect = 7.5e-74, Sum P(4) = 7.5e-74
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 124 SSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRK 183
SS P++PS +G + +G + SPS+ S + +E K ++ R
Sbjct: 141 SSPLPMSPSRSGINRRSLAGVAVNG------SPSTTAKGSIGRRRRESPSPVSKRASTRT 194
Query: 184 RGDSSISHEPQN 195
R D+ ++ P N
Sbjct: 195 RPDNMDAYHPSN 206
Score = 47 (21.6 bits), Expect = 4.0e-73, Sum P(4) = 4.0e-73
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 748 MLRHTSQDDPKFSDGSRTIPVDNSVRN----GIS-LTTEQDEED 786
+L T D P+ + + DN N G S ++TE +EED
Sbjct: 456 ILGETGSDAPETTTDDEEVETDNGSENDDEEGESNMSTETEEED 499
Score = 43 (20.2 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 144 THRSSQSFDHESPSSLDTRSANSQSQERQKD-GKKASTKRKRGDSSISHEPQ-NENP-QQ 200
T S++ D E S++ T + +R D G A R + + P +++P
Sbjct: 476 TDNGSENDDEEGESNMSTETEEEDGDDRDDDVGLTAEELRLKYANLPDTNPHPDQSPYSD 535
Query: 201 LDSRNS 206
DS +S
Sbjct: 536 EDSEDS 541
Score = 43 (20.2 bits), Expect = 6.5e-28, Sum P(4) = 6.5e-28
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 876 NDFFKPITTDMDRLKSYKKHRHGRR 900
ND K +++R ++ RHGRR
Sbjct: 1228 NDCRKRRMAELERSLYFESKRHGRR 1252
Score = 42 (19.8 bits), Expect = 3.2e-73, Sum P(4) = 3.2e-73
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 SSISHEPQNENPQQLDSRNSVV 208
S+ EPQ E PQQ ++ +V
Sbjct: 325 SAFLPEPQEELPQQFSHQDHLV 346
Score = 42 (19.8 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 1355 EENLGSIGNSKGRSVHNS-VMELRNICNHPYLSQLHAEEV 1393
EE IGN G+ H + LR P LS H V
Sbjct: 232 EETADDIGND-GQDEHGQRIQRLRIKVKKPALSIQHPSHV 270
Score = 40 (19.1 bits), Expect = 3.1e-72, Sum P(3) = 3.1e-72
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 6 NVELEAAKFLHKLIQDSKDEPAKLATK 32
+ ELE A + Q S +EP + T+
Sbjct: 688 SAELEPAAMTPSIDQTSTEEPIAIGTE 714
Score = 39 (18.8 bits), Expect = 6.5e-73, Sum P(4) = 6.5e-73
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 328 ERSQ-VPR--FPGNMMIETPMQQPTVSSL 353
ER++ VP P N + +P PT+S +
Sbjct: 18 ERAEPVPSDLLPNNSPVNSPTIDPTLSEI 46
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 764 (274.0 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 247/855 (28%), Positives = 396/855 (46%)
Query: 730 SGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSL 789
SG++ D S D+S ++ D + P ++G +E++E DKS
Sbjct: 101 SGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPS----QSGSDSESEEEERDKSS 156
Query: 790 --HTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSED 847
T+S PK + + + K K IL Q+K +++ + + E ++
Sbjct: 157 CDETESDYEPKNKVKSRKPQNRSKAK---NGKKILGQKK--RQIDSSEEEDDEEDYDNDK 211
Query: 848 ISAKTKSVIEXXXXXXXXXXXXXXNDFLN----DFFKPITTDMDRLKSYKKHRHGRRIKQ 903
S++ ++ + +D L D +P + + ++ + R GR+
Sbjct: 212 RSSRRQATVNVSYKEDEEMKTDS-DDLLEVCGEDVPQPEEEEFETIERFMDCRIGRK--- 267
Query: 904 LXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKRERWRGV-NKYVKEFHKRK 962
F E +KE + + IK + W + N + E ++
Sbjct: 268 -GATGATTTIYAVEADGDPNAGF----EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQ 322
Query: 963 ERIH-REKIDRIQR---EKINLLKI---NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL 1015
+ + +K+D ++ E LK DVE Y Q +D ++K + E+ +
Sbjct: 323 QNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYY--NCQQELTDDLHKQYQIVERIIAHS 380
Query: 1016 GSKLQEAKSMASHF-------ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
K A ++ +E + +K++ ++ +Q+K + K
Sbjct: 381 NQK--SAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKV 438
Query: 1069 YLMAHSIKESVSEQPTCLQGGK---LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQ 1125
L ++ +QP+ + G + LR+YQ++GL WL + + ILADEMGLGKT+Q
Sbjct: 439 -LKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQ 497
Query: 1126 VIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185
I+ + YL GPF W+ EI WA +++ +VY G R + +
Sbjct: 498 TISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHE 557
Query: 1186 IVHQKFNVL----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241
+H + L L T ++ K D+ L + W +I +DE HR+KN L L ++
Sbjct: 558 WMHPQTKRLKFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFK 616
Query: 1242 SSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXX 1301
S+HRLL+TGTP F E FS W + FE +
Sbjct: 617 SNHRLLITGTPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS- 667
Query: 1302 XXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGS 1360
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N +
Sbjct: 668 ---------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKA 718
Query: 1361 IGN-SKGRSVH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 1417
+ SKG + N +MEL+ CNH YL + + + + L ++R GKL +LD+
Sbjct: 719 LSKGSKGSTSGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDK 777
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LL +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 778 LLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGS 837
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 838 EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTK 897
Query: 1538 QTVEEQVRASAEHKL 1552
+VEE + A+ K+
Sbjct: 898 GSVEEDILERAKKKM 912
Score = 80 (33.2 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 39/164 (23%), Positives = 61/164 (37%)
Query: 81 SGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVA---PSGAGHD 137
SGS G SS + GSSSQ DS +G S+ E TS V P G +
Sbjct: 11 SGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAE 68
Query: 138 YYQAS----GTHRSS-----QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
++++S RS+ Q + P+S ++ S S D KRK+
Sbjct: 69 FWKSSPSILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDE 128
Query: 189 ISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS 232
+ +P Q S + + K + + + K +S
Sbjct: 129 DWQMSGSGSPSQSGSDSESEEEERDKSSCDETESDYEPKNKVKS 172
Score = 60 (26.2 bits), Expect = 3.8e-72, Sum P(2) = 3.8e-72
Identities = 43/193 (22%), Positives = 76/193 (39%)
Query: 148 SQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
SQS D +S S+ + S +S DG + + DS Q+E+ SR +
Sbjct: 1 SQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESGSQSESESDT-SRENK 56
Query: 208 VNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNV 266
V + K++ + S+ ++S Q +H S N S +E +
Sbjct: 57 VQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQH--PASSNSGS-----EEDSSS 109
Query: 267 TEKPLDSANVSNSVPRASNSKFPEEVEVSASGQ-QQGNSLSSANGVLASRGTWNQNRAGF 325
+E DS + SN V R + E+ ++S SG Q S S + + + ++ + +
Sbjct: 110 SE---DSDDSSNEVKRKKHKD--EDWQMSGSGSPSQSGSDSESEEEERDKSSCDETESDY 164
Query: 326 PFERSQVPRFPGN 338
+ R P N
Sbjct: 165 EPKNKVKSRKPQN 177
Score = 48 (22.0 bits), Expect = 6.9e-71, Sum P(2) = 6.9e-71
Identities = 40/183 (21%), Positives = 69/183 (37%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SG+ S S S SS D S+ S S + + S D+S ++ Q + P+
Sbjct: 7 SGSASGSGS-GSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVD 65
Query: 202 DSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
+ +P + V + +Q + G E SS + S VK+
Sbjct: 66 GAEFWKSSP---SILAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKR 122
Query: 262 EGQNVTEKPLD-SANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQ 320
+ + + S + S S S+S+ EE +S + + N V SR N+
Sbjct: 123 KKHKDEDWQMSGSGSPSQS---GSDSESEEEERDKSSCDETESDYEPKNKV-KSRKPQNR 178
Query: 321 NRA 323
++A
Sbjct: 179 SKA 181
Score = 40 (19.1 bits), Expect = 4.8e-70, Sum P(2) = 4.8e-70
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK 565
QS +D SA G G+ + G SS G ++DS S+
Sbjct: 2 QSDDDSGSASGS-------GSGSSSGSSSDGSSSQSGSSDSDSGSE 40
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 513 (185.6 bits), Expect = 4.1e-74, Sum P(3) = 4.1e-74
Identities = 141/441 (31%), Positives = 214/441 (48%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYL 1012
+Y+K + +E + K ++++ +K D E + + + SD ++
Sbjct: 426 EYLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTA 485
Query: 1013 QKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE-SDQAKHYLESNEK-YYL 1070
++L E + H ++ V + + + E + E ++ A+ L+ K Y L
Sbjct: 486 EQLQDPTAEDGNGDGH--GVLENVDYVKL--NSQDSDERQQELANIAEEALKFQPKGYTL 541
Query: 1071 MAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI 1130
+K V P ++G +LREYQM GL W+V+LY LNGILADEMGLGKT+Q I+L+
Sbjct: 542 ETTQVKTPV---PFLIRG-QLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLL 597
Query: 1131 CYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQK 1190
++ +++ GP WE E W P + + Y G +ER K +
Sbjct: 598 AHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNC 657
Query: 1191 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
F+V +T+Y+ + D + W Y+I+DE IKN + L + ++ RLLLTG
Sbjct: 658 FHVCITSYKTVTQ--DIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTG 715
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP IF+S +DF WF+ P + + + +I R
Sbjct: 716 TPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAP-------LIGR 768
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL----MKR--VEENLGSIGNS 1364
LH+VLRPF+LRRLK +VE +LPEK E +V C S Q+ L M R +ENL S GN
Sbjct: 769 LHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKS-GNM 827
Query: 1365 KGRSVHNSVMELRNICNHPYL 1385
SV N VM+LR CNHP L
Sbjct: 828 M--SVLNIVMQLRKCCNHPNL 846
Score = 358 (131.1 bits), Expect = 4.1e-74, Sum P(3) = 4.1e-74
Identities = 75/169 (44%), Positives = 107/169 (63%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +L HR L F+ M+++LDV++ +L+ Y+Y RLDG T R A+
Sbjct: 1187 CGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+++FN D F F+LS R+GGVGVNL ADTVI +D+DWNP +D QAQ R HRIGQ R+
Sbjct: 1247 MERFNA-DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRN 1305
Query: 1529 VLVLRFETVQTVEEQV--RASAEHKLG---VANQSITAGFFDNNTSAED 1572
V + R + +T+EE + +A+ + +LG + T FF + S D
Sbjct: 1306 VSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRD 1354
Score = 65 (27.9 bits), Expect = 6.2e-27, Sum P(3) = 6.2e-27
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEG 988
EIE ER E+ K KR+ G+ K V++F +++ + + ++ + +
Sbjct: 282 EIERAAER--EI-KEKRKMCAGIAKMVRDFWSSTDKVVDIRAKEVLESRLRKARNKHLMF 338
Query: 989 YLRMVQDAKSDRVNKLLKETEK---YLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKY 1045
+ V D S+ V + L + K K +E K+ S ++E D+ QT++ EK
Sbjct: 339 VIGQV-DEMSNIVQEGLVSSSKSPSIASDRDDKDEEFKAPGS--DSESDDEQTIANAEKS 395
Query: 1046 EPAVENEDESD 1056
+ + E D
Sbjct: 396 QKKEDVRQEVD 406
Score = 42 (19.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
L+E K MA F E + + ++ V + A ++ D+ + + E K
Sbjct: 244 LEEVKWMAVDFRTETNTKRKIAKVIAHAIAKQHRDKQIEIERAAEREIK 292
Score = 39 (18.8 bits), Expect = 4.1e-74, Sum P(3) = 4.1e-74
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 387 SQLFSTNRGDETSAMLSSGKVLEHD 411
S L + NR +LSSG V + D
Sbjct: 81 SILLTENRSIRDKLVLSSGPVRQED 105
Score = 37 (18.1 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 429 QNSVPGTAMLRTMASRDTGKSSVSQTP-VFS 458
Q VP A L ++ +D SS SQ P +F+
Sbjct: 862 QLDVP--ARLFEISQQDPSSSSASQIPEIFN 890
Score = 37 (18.1 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 744 DASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQD----EEDKSLHT-DSPPAPK 798
D L SQ DP S S+ + N + G + EE +++ T P AP+
Sbjct: 864 DVPARLFEISQQDPSSSSASQIPEIFNLSKIGYQSSVRSAKPLIEELEAMSTYPEPRAPE 923
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 791 (283.5 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
Identities = 224/649 (34%), Positives = 320/649 (49%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K E +
Sbjct: 339 EKDPRIA-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRVLEVAHTKDAETGEEVT 396
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +PA E ES Q ++ E+ A + + +
Sbjct: 397 HYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVER---PASDSWQKLEKSR 453
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + + GPF
Sbjct: 454 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPF 512
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF+
Sbjct: 513 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH 571
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KI W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 572 VVITTFEMILA--DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 630 LQNSVEELFSLLNFLEPSQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 672
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + +KG + HN
Sbjct: 673 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--TKGANQHN 730
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--DTL------IPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ D P L +++ GKL ++D+
Sbjct: 731 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDK 790
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 791 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 850
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 851 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 910
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 911 NSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME-VEDLLRK 958
Score = 57 (25.1 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
Identities = 44/184 (23%), Positives = 71/184 (38%)
Query: 120 EPFTSSRP--PVAPSGA--GHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKD- 174
EP + P P GA +ASGT + E S DT +A ++S++ K+
Sbjct: 135 EPKRAKEPKEPKQKDGAKKARKPREASGTKEAK-----EKRSGADT-AARTKSKKASKEQ 188
Query: 175 GKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAP---GGFSVKGA-- 229
G ++K+G ++ Q +S+ +P + D+ G VK
Sbjct: 189 GPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEEST-ESADSQKRRSGRQVKRRKY 247
Query: 230 -EQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKF 288
E +F +V G E + L +S L E P D AN+ + + SK
Sbjct: 248 NEDLDFKVVDDDG--ETIAVLGAGRTSALSASTLAWQAEEPPEDDANI---IEKILASKT 302
Query: 289 PEEV 292
+EV
Sbjct: 303 VQEV 306
Score = 43 (20.2 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
+S +FD++SPS + +S QE + + + ++ + E + P+++ S N
Sbjct: 26 ASVNFDYKSPSPFE----HSTDQEEKIEDVASHCLSQKDLYAAEEEAETLFPRKMTSHNG 81
Query: 207 V 207
+
Sbjct: 82 M 82
Score = 41 (19.5 bits), Expect = 2.2e-72, Sum P(2) = 2.2e-72
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 154 ESPSSLDTRSANSQSQERQKDG-KKASTKRKRGDSSISHEPQN 195
E + + + A + +QKDG KKA R+ + + E ++
Sbjct: 129 EPRKAKEPKRAKEPKEPKQKDGAKKARKPREASGTKEAKEKRS 171
Score = 40 (19.1 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 105 KDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESP-SSLDTRS 163
K S A A SK PV G + S T S D P SSL +
Sbjct: 169 KRSGADTAARTKSKKASKEQGPTPVERKKKGK---RKSETTVESLELDQGLPNSSLRSPE 225
Query: 164 ANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
+++S + QK KR++ + + + +++ + +
Sbjct: 226 ESTESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETI 263
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 791 (283.5 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
Identities = 224/649 (34%), Positives = 320/649 (49%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K E +
Sbjct: 339 EKDPRIA-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRVLEVAHTKDAETGEEVT 396
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +PA E ES Q ++ E+ A + + +
Sbjct: 397 HYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVER---PASDSWQKLEKSR 453
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + + GPF
Sbjct: 454 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPF 512
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF+
Sbjct: 513 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH 571
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KI W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 572 VVITTFEMILA--DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 630 LQNSVEELFSLLNFLEPSQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 672
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + +KG + HN
Sbjct: 673 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--TKGANQHN 730
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--DTL------IPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ D P L +++ GKL ++D+
Sbjct: 731 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDK 790
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 791 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 850
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 851 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 910
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 911 NSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME-VEDLLRK 958
Score = 57 (25.1 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
Identities = 44/184 (23%), Positives = 71/184 (38%)
Query: 120 EPFTSSRP--PVAPSGA--GHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKD- 174
EP + P P GA +ASGT + E S DT +A ++S++ K+
Sbjct: 135 EPKRAKEPKEPKQKDGAKKARKPREASGTKEAK-----EKRSGADT-AARTKSKKASKEQ 188
Query: 175 GKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAP---GGFSVKGA-- 229
G ++K+G ++ Q +S+ +P + D+ G VK
Sbjct: 189 GPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEEST-ESADSQKRRSGRQVKRRKY 247
Query: 230 -EQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKF 288
E +F +V G E + L +S L E P D AN+ + + SK
Sbjct: 248 NEDLDFKVVDDDG--ETIAVLGAGRTSALSASTLAWQAEEPPEDDANI---IEKILASKT 302
Query: 289 PEEV 292
+EV
Sbjct: 303 VQEV 306
Score = 43 (20.2 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
+S +FD++SPS + +S QE + + + ++ + E + P+++ S N
Sbjct: 26 ASVNFDYKSPSPFE----HSTDQEEKIEDVASHCLSQKDLYAAEEEAETLFPRKMTSHNG 81
Query: 207 V 207
+
Sbjct: 82 M 82
Score = 41 (19.5 bits), Expect = 2.2e-72, Sum P(2) = 2.2e-72
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 154 ESPSSLDTRSANSQSQERQKDG-KKASTKRKRGDSSISHEPQN 195
E + + + A + +QKDG KKA R+ + + E ++
Sbjct: 129 EPRKAKEPKRAKEPKEPKQKDGAKKARKPREASGTKEAKEKRS 171
Score = 40 (19.1 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 105 KDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESP-SSLDTRS 163
K S A A SK PV G + S T S D P SSL +
Sbjct: 169 KRSGADTAARTKSKKASKEQGPTPVERKKKGK---RKSETTVESLELDQGLPNSSLRSPE 225
Query: 164 ANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
+++S + QK KR++ + + + +++ + +
Sbjct: 226 ESTESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETI 263
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 775 (277.9 bits), Expect = 4.6e-74, Sum P(2) = 4.6e-74
Identities = 183/506 (36%), Positives = 272/506 (53%)
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136
E + P+ L G+L+E+Q+ G+ ++ + N +LADEMGLGKTVQ +A I +L
Sbjct: 432 EPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHV 491
Query: 1137 KNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKE-KIV------HQ 1189
+ +GPF W + W+P ++ +VY G E R + KE +++
Sbjct: 492 RRQQGPFVVVVPLSTMPSWAETFDNWSPDLNYVVYNGN-EASRNVLKEYELMVDGNPRRP 550
Query: 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 1249
KFNVLLTTYEY++ D LS+ W ++ +DE HR+KN +L L+ + S RLL+T
Sbjct: 551 KFNVLLTTYEYVLV--DSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLIT 608
Query: 1250 GTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIIN 1309
GTP + N D + N + + + +
Sbjct: 609 GTPIQNNLAELSALLDFLNPGLVNVDADM--------DLNSEAASEK-----------LA 649
Query: 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGR 1367
L + + PF+LRR K KVE++LP K E+++R E S Q K + +N ++ +KG+
Sbjct: 650 ELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALNEGTKGQ 709
Query: 1368 --SVHNSVMELRNICNHPYLSQLHAEEV--DTLIPKHYLPPIVRLCGKLEMLDRLLPKLK 1423
S+ N +MEL+ NHP++ ++ + + L ++ GK+ +LD+LL KLK
Sbjct: 710 KQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDVLRALITSSGKMMLLDQLLAKLK 769
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS M ++LD++ DY+ ++ Y Y RLDG R I+ +N DS F F+
Sbjct: 770 RDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNAPDSSDFAFI 829
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVI+FD+DWNPQ DLQA ARAHRIGQ + V V R + TVEE+
Sbjct: 830 LSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTVEEE 889
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTS 1569
V A +KL + +I G D S
Sbjct: 890 VIERARNKLLLEFITIQRGVTDKEAS 915
Score = 63 (27.2 bits), Expect = 4.6e-74, Sum P(2) = 4.6e-74
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 729 VSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKS 788
V+ ++ YS+ PV DA+G+ + +D + P D++V + D D S
Sbjct: 11 VTSAFANGYSVSPVTDAAGLHNELAAND--HGNTVFQSPEDDAVSES---SDNADPADDS 65
Query: 789 LHTDSPPA 796
+TDSP A
Sbjct: 66 YNTDSPDA 73
Score = 52 (23.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 40/159 (25%), Positives = 60/159 (37%)
Query: 106 DSKAGLAENEMSKIEPFT-SSRPPVAPSGAGHDYYQASGTHRSSQSFD-----HESPS-- 157
DS E++ S E +S PPVA + + GT R S S D ++P
Sbjct: 69 DSPDAEGEDDESGTENSAKASSPPVAENSSSPQ--TTRGTKRKSPSVDDADFIRQNPDLY 126
Query: 158 -------SLDTRSANSQSQERQKDGKKASTKRKRG-DSSISHEPQNENPQQLDSRNSVVN 209
+ TR S E + D +KR+R S IS P Q S +S +
Sbjct: 127 GLRRSGRARTTRRVAESSSESESDDVAPRSKRRRPLASQISKAPTRSATQSTFSDDSDSD 186
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSS 248
G + + Q++ N VPS ++ FS+
Sbjct: 187 EYGGSRARASKA---KRRRLLQASANNVPSHAEVR-FST 221
Score = 39 (18.8 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 109 AGLAENEMSKIEPFTSSRPPVAPSGAGH 136
+ +A+ E+ + SSRPPV+ H
Sbjct: 398 SNIAQREIDRFLD-RSSRPPVSDKKESH 424
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 785 (281.4 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 643 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 702
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 703 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 762
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 763 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 820
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 821 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 863
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 864 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 923
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 924 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 983
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 984 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1043
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 1044 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1103
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1104 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1140
Score = 57 (25.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 133 GAGHDYYQASGTHRS-SQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGD 186
G G + S S S D S D+ S +S S + GKK+ +RK R
Sbjct: 210 GVGSKRKKGSSVSASVSSEEDEREESDFDSASIHSSSMRSECSAALGKKSKRRRKKKRNQ 269
Query: 187 SSISHEPQNE 196
S +H P ++
Sbjct: 270 GSPAHSPVDD 279
Score = 56 (24.8 bits), Expect = 1.6e-72, Sum P(3) = 1.6e-72
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
+ + + +S S S N + +++ KD K+ KRK+ D E NE+
Sbjct: 8 NEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDE---EDDNED 55
Score = 37 (18.1 bits), Expect = 1.6e-72, Sum P(3) = 1.6e-72
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 1015 LGSKLQEAKSMASHFENEMDETQ 1037
+GSK ++ S+++ +E DE +
Sbjct: 211 VGSKRKKGSSVSASVSSEEDERE 233
Score = 37 (18.1 bits), Expect = 1.6e-72, Sum P(3) = 1.6e-72
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 590 KQLATGKLEAEMQSQETAESQAFFTSASQQLESASTR 626
K+ + A + S+E ++ F SAS + S+S R
Sbjct: 214 KRKKGSSVSASVSSEEDEREESDFDSAS--IHSSSMR 248
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 482 (174.7 bits), Expect = 4.8e-74, Sum P(4) = 4.8e-74
Identities = 110/321 (34%), Positives = 161/321 (50%)
Query: 1068 YYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVI 1127
Y L +K + P L+G +LREYQ GL WLV++Y +LNGILADEMGLGKT+Q I
Sbjct: 609 YTLATTQVKTPI---PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTI 664
Query: 1128 ALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187
+L+ +L K + GP WE E+ W P + Y G +ER+ +
Sbjct: 665 SLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTK 724
Query: 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
F+V +T+Y+ ++ H + W Y+I+DE IKN + L ++ S RLL
Sbjct: 725 PNAFHVCITSYKLVLQDHQA--FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLL 782
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
LTGTP +F S +F +WF+ P + S + +
Sbjct: 783 LTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEG-------L 835
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL---MKRVEENLGSIGNS 1364
+ RLH+VLRPF+LRR+K VE ++P+K E ++RC S Q+ L ++
Sbjct: 836 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATG 895
Query: 1365 KGRSVHNSVMELRNICNHPYL 1385
SV N +M+LR +CNHP L
Sbjct: 896 HFMSVINILMQLRKVCNHPNL 916
Score = 389 (142.0 bits), Expect = 4.8e-74, Sum P(4) = 4.8e-74
Identities = 83/171 (48%), Positives = 112/171 (65%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL+
Sbjct: 2031 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2090
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RDV
Sbjct: 2091 ERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2149
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 1580
+ R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2150 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2197
Score = 66 (28.3 bits), Expect = 4.2e-73, Sum P(5) = 4.2e-73
Identities = 43/192 (22%), Positives = 77/192 (40%)
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKAST 180
PF+ S+ P S D + + SQ + + PSS T+ N Q +D ++ +
Sbjct: 349 PFSPSQTPSHDSDTP-DGPEENIEEEPSQDLEVDPPSSSVTQ-CNKQCWHPDEDDEEFTA 406
Query: 181 KRKRGDS---SISHEPQNENPQQLDSRNSVVN-PRKGKMNKVDAPGGFSVKGAEQSNFNM 236
+ +I+ E Q E ++D + R+G+++ + ++ GA + +
Sbjct: 407 NEDEAEDEEDTIAAEEQLEG--EVDHAMELSELAREGELSMEELLQQYA--GAYAYDAS- 461
Query: 237 VPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPL-DSANVSNSVPRASNSKFPEEVEVS 295
P G E + N S +E ++V E DS++ S+S S + E E
Sbjct: 462 APGSGNSEDEEEVEANSSDC--ELEETRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEE 519
Query: 296 ASGQQQGNSLSS 307
SG Q S
Sbjct: 520 MSGSSQSEESES 531
Score = 61 (26.5 bits), Expect = 4.8e-74, Sum P(4) = 4.8e-74
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 944 KRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ RW RGV + V R R+K +R +RE+ + LR + + V
Sbjct: 153 QERRWKRGVARKVVRMVIRHHEEQRQKEERARREE---------QAKLRRIASTMAKDVR 203
Query: 1003 KLLKETEKYLQ-KLGSKLQEA--KSMASHFENEMDETQTVS 1040
+ EK +Q K S+L+E K++ H + + +T+ S
Sbjct: 204 QFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYS 244
Score = 56 (24.8 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 33/127 (25%), Positives = 49/127 (38%)
Query: 54 ISRAMET--VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGL 111
+ AME + + L ME L L +G+ D+S S + S L
Sbjct: 428 VDHAMELSELAREGELSMEEL----LQQYAGAYAYDASAPGSGNSEDEEEVEANSSDCEL 483
Query: 112 AEN----EMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQ 167
E E ++ + + S S D + SSQS + ES S D +S SQ
Sbjct: 484 EETRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQS-QSQ 542
Query: 168 SQERQKD 174
+ E Q+D
Sbjct: 543 ADEEQED 549
Score = 51 (23.0 bits), Expect = 5.3e-73, Sum P(4) = 5.3e-73
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 150 SFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
S D E S + S +SQS+E + D + + + + D E +++
Sbjct: 508 SEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDEGDDDD 555
Score = 49 (22.3 bits), Expect = 2.4e-71, Sum P(5) = 2.4e-71
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENE 1052
V+ SD + ++ E+ Q+ S ++ S H E+E DE + +
Sbjct: 474 VEANSSDCELEETRDVEEAAQEDSSS--QSDSAEEHSEDEEDEHSEEEMSGSSQSEESES 531
Query: 1053 DESDQAKHYLESNEK 1067
DES+ A+ +++E+
Sbjct: 532 DESEDAQSQSQADEE 546
Score = 48 (22.0 bits), Expect = 3.1e-71, Sum P(5) = 3.1e-71
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 539 GNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSI-----HAEERKQLA 593
GN+ + + + +SS LE +E +S +HS H+EE +
Sbjct: 466 GNSEDEEEVE--ANSSDCELEETRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGS 523
Query: 594 TGKLEAEMQSQETAESQA 611
+ E+E E A+SQ+
Sbjct: 524 SQSEESESDESEDAQSQS 541
Score = 48 (22.0 bits), Expect = 3.1e-71, Sum P(5) = 3.1e-71
Identities = 18/77 (23%), Positives = 37/77 (48%)
Query: 550 GGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAES 609
G S +EA+SS E+E + ++++ D S ++ ++ + + E E +E + S
Sbjct: 466 GNSEDEEEVEANSSDCELEETRDVEEAAQE-DSSSQSDSAEEHSEDE-EDEHSEEEMSGS 523
Query: 610 QAFFTSASQQLESASTR 626
S S + E A ++
Sbjct: 524 SQSEESESDESEDAQSQ 540
Score = 45 (20.9 bits), Expect = 6.3e-71, Sum P(5) = 6.3e-71
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
+ R+ R V ++ +E +++ER RE+ +++R + K DV + V+ +
Sbjct: 161 VARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAK--DVRQFWSNVEKVVQFKQQ 218
Query: 1003 KLLKETEK 1010
L+E K
Sbjct: 219 SRLEEKRK 226
Score = 41 (19.5 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1317 PFVLRRLKHKVENELPEKIERL 1338
PF L L+ K + + E++ER+
Sbjct: 1870 PFYLDSLEEKRKQQRSERLERI 1891
Score = 40 (19.1 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 678 RRPLPAPTVQHELVK 692
R P+P PT+ L+K
Sbjct: 1374 RTPIPTPTLVRPLLK 1388
Score = 39 (18.8 bits), Expect = 4.8e-25, Sum P(5) = 4.8e-25
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 116 MSKIEPFTSSRPPVAPSGAGHDYYQASGTHR 146
+S ++P T P V PS G SGT R
Sbjct: 1082 LSPLQPNTGPLPQVLPSPMG----VMSGTSR 1108
Score = 38 (18.4 bits), Expect = 4.8e-25, Sum P(5) = 4.8e-25
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 54 ISRAMETVINQNGLDMEALKSSRLPL 79
++R ++ V Q G + + S R PL
Sbjct: 1004 VNRMLQPVPKQEGRTVVVVNSPRAPL 1029
Score = 37 (18.1 bits), Expect = 4.8e-74, Sum P(4) = 4.8e-74
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1392 EVDTLIPKHYL 1402
E DT +P+H L
Sbjct: 969 EADTFLPRHRL 979
Score = 37 (18.1 bits), Expect = 4.2e-73, Sum P(5) = 4.2e-73
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESD 1056
+E + E+E DE++ + + E EDE D
Sbjct: 518 EEMSGSSQSEESESDESEDAQSQSQADE--EQEDEGD 552
Score = 37 (18.1 bits), Expect = 2.4e-71, Sum P(5) = 2.4e-71
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 170 ERQKDGKKASTKRKRGDSSISHE---PQNENPQQLDSR--NSVVNPRKGKMNKVDAPGG 223
E Q++G A T+R+ + + HE P E + L + +P + + D P G
Sbjct: 308 EEQQEGNDAETQRREIEL-LRHEGELPLEELLRSLPPQLLGGPFSPSQTPSHDSDTPDG 365
Score = 37 (18.1 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 366 PIGPSSYPTGELGSSALSP 384
P+ P+S P G + S L P
Sbjct: 1069 PVVPASRPPGPVLLSPLQP 1087
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 781 (280.0 bits), Expect = 5.9e-74, Sum P(3) = 5.9e-74
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 731 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 790
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 791 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 850
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 851 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 908
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 909 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 951
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 952 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1011
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1012 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1071
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1072 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1131
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1132 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1191
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1192 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1228
Score = 64 (27.6 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 37 LQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-SSTAQCA 94
++H+ S H++ Y+ S+ M +I + + S++ G++ + S+
Sbjct: 146 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPMSKMMTILGAKWREFSANNPFK 202
Query: 95 GSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
GS++ VA + A +AE ++ SS PVAPSG
Sbjct: 203 GSAAAVAAAAAAAAAAVAE----QVSAAVSSAAPVAPSG 237
Score = 60 (26.2 bits), Expect = 5.9e-74, Sum P(3) = 5.9e-74
Identities = 36/160 (22%), Positives = 59/160 (36%)
Query: 110 GLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQ 169
G E S PF S VA + A A + S +PS T +
Sbjct: 189 GAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSAAPVAPSGPPTLPPPPSAD 248
Query: 170 ERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN-KVDAPGGFSVKG 228
+ ++A TK +G H+ ++++P+ D R + + + K+ GG KG
Sbjct: 249 TQPPPIRRAKTKEGKGPG---HKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKG 305
Query: 229 AE---QSNFNMVPSGGQMEHFS----SLSGNMSSILRVKQ 261
QS+ P + + S S SG +R K+
Sbjct: 306 GSYVLQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 345
Score = 53 (23.7 bits), Expect = 5.9e-74, Sum P(3) = 5.9e-74
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 582 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 620
Score = 43 (20.2 bits), Expect = 1.9e-72, Sum P(4) = 1.9e-72
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
E K H E E + + E+YE E E E ++ ++E
Sbjct: 414 EGKWSCPHCEKEGVQWEAKEEEEEYEEG-EEEGEKEEEDDHME 455
Score = 42 (19.8 bits), Expect = 4.6e-72, Sum P(3) = 4.6e-72
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR-IQREK 977
SE E ER DE ++ K E G ++Y +++ R HREK ++ +R K
Sbjct: 72 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREKKEKKTKRRK 118
Score = 39 (18.8 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 323 SDLDSGSVHSASG--RPDGPVRTKKLKRG 349
Score = 37 (18.1 bits), Expect = 1.8e-70, Sum P(4) = 1.8e-70
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 335 FPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPT 374
F G+ +++ V A P+ PS PT
Sbjct: 201 FKGSAAAVAAAAAAAAAAVAEQVSAAVSSAAPVAPSGPPT 240
Score = 37 (18.1 bits), Expect = 1.8e-70, Sum P(4) = 1.8e-70
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR-KRGD 186
D + G+ R ES S + + + ++ K+ TKR K+G+
Sbjct: 71 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE 121
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 769 (275.8 bits), Expect = 7.0e-74, Sum P(2) = 7.0e-74
Identities = 208/616 (33%), Positives = 310/616 (50%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RIQ +KI KI + D + D N E ++ L+ + +++
Sbjct: 790 EKDKRIQ-QKIKRFKIKQAQK-AHFFADIEEDPFNPDYVEVDRVLEVSYCEDKDSGEPVV 847
Query: 1028 HFENEMD----ETQTVSVVEKYEPA-VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
++ + E T ++E + +E + AK + E+ A K+ +
Sbjct: 848 YYLVKWCSLPYEDSTWELMEDVDQTKIEEFKKLQAAKPHTNRMERP--PASHWKKLEKSR 905
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
C + LR+YQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + T +GP
Sbjct: 906 KYCNENS-LRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRT-GIKGP 963
Query: 1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL---------FKEKIVH--QKF 1191
F WE E W ++ IVY G R+ L + +++ +F
Sbjct: 964 FLIIAPLSTIANWEREFRTWT-HLNVIVYHGSVVSRQMLQQYEMYCRDSQGRVIRGAYRF 1022
Query: 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
++TT+E ++ P+L+ I W +IIDE HR+KN +CKL K H++LLTGT
Sbjct: 1023 QAVITTFEMILG--GCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGT 1080
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRL 1311
P F S F Q F GD + + +L
Sbjct: 1081 PLQNTVEELFSLLHFLEPTRFPSENTFMQEF-------GDLKTEEQ----------VQKL 1123
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRS-- 1368
+L+P +LRRLK VE +L K E ++ E + QK + + E+N + G++
Sbjct: 1124 QAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANV 1183
Query: 1369 --VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HYLPPIVRLCGKLEMLDRL 1418
+ N++MELR CNHPYL + E++ + P +L +++ GKL ++D+L
Sbjct: 1184 PNLLNTMMELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLIDKL 1243
Query: 1419 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478
LPK+KA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS
Sbjct: 1244 LPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSD 1303
Query: 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 1304 RFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRN 1363
Query: 1539 TVEEQVRASAEHKLGV 1554
+ E ++ A KLG+
Sbjct: 1364 SYEREMFDRASLKLGL 1379
Score = 79 (32.9 bits), Expect = 7.0e-74, Sum P(2) = 7.0e-74
Identities = 46/230 (20%), Positives = 94/230 (40%)
Query: 38 QHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSS 97
Q + SS HS+ ++ + ++ G + L+ LP +SS S
Sbjct: 435 QRLNSSNAFHSLEEALLGEQHDQRLDDLGEAPDLLEDELLPQLEALDQEESS------SH 488
Query: 98 SQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPS 157
S V V++S+ + E+ + +++PP +G S T +SS S S S
Sbjct: 489 SWVNAGVRNSRE--VKEEVEDVPLVYNAQPPKNTNGPSSQPRVHSPTLKSSSSSSSSSSS 546
Query: 158 S-LDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN 216
S + + Q Q++Q+ ++++ +S +S + Q + ++ S +G+ N
Sbjct: 547 SYMSEKRLQKQKQQQQQQ------QQQQMESPLSDDKQ-QKANRIISEAIAKARERGEKN 599
Query: 217 --KVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQ 264
+V +P F ++ + S + + SS + + KQ+ Q
Sbjct: 600 IPRVMSPDSFPSSSSQHRSHKAGSSKSKSKDKSSKKARIVKSSKPKQKAQ 649
Score = 49 (22.3 bits), Expect = 6.5e-69, Sum P(3) = 6.5e-69
Identities = 29/112 (25%), Positives = 47/112 (41%)
Query: 127 PPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQ------KDGKKAST 180
P PS + +G+ +S +S D S + +S+ + Q+ Q K GKK
Sbjct: 606 PDSFPSSSSQHRSHKAGSSKS-KSKDKSSKKARIVKSSKPK-QKAQIGKIVIKFGKK--- 660
Query: 181 KRKRGDSS--ISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAE 230
KRK+ DSS +S + + D + + RK K K + G + E
Sbjct: 661 KRKKTDSSEELSDDDRPTRRSSKDDDSKRRSNRKVKRKKYEDDGEARISDEE 712
Score = 49 (22.3 bits), Expect = 9.9e-68, Sum P(4) = 9.9e-68
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 88 SSTAQCAGSSSQVAGVVKD--SKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTH 145
+S+ + S+S + V S +GL N+ I + + P++ S + D + +S
Sbjct: 347 TSSTTISSSASNLLDTVCPFLSTSGLEHNQQVPIMGSPAQQCPISSSKSDQDLFSSSEVF 406
Query: 146 RSS-QSFDHESPSSL 159
SF ++P S+
Sbjct: 407 PDGLSSFSADTPFSM 421
Score = 46 (21.3 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 27/150 (18%), Positives = 65/150 (43%)
Query: 165 NSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPG-- 222
+ Q Q +Q ++ + + SH+ + L+ ++ V N + + ++ G
Sbjct: 146 HQQLQHKQFQQQQQFQQHQAQHQQYSHQHLQQRQHSLN-QHPVTNQLQLRHQQIAHQGLP 204
Query: 223 GFSVKGAEQSNF----NMVPSGGQMEHFSSLSGNMSSIL-RVKQEGQNVTEKPLDSANVS 277
E + F N++P+ Q H +SLS SS V G + +++ ++S+ +
Sbjct: 205 HIGKNYQEHTRFYYEDNILPNNSQQGHHNSLSVEGSSFHPTVAPGGHSQSKQYIESSMMP 264
Query: 278 NSVPRASNSKFPEEVEVSASG-QQQGNSLS 306
+ + + + + V+ +G + + N L+
Sbjct: 265 MASHQHTGFQATQRVQGFTTGPRMEDNGLT 294
Score = 39 (18.8 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 20/102 (19%), Positives = 40/102 (39%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPP 579
+++N PSS P V +P L ++ + S L+ ++ + + M+ P
Sbjct: 518 KNTNGPSSQPRVHSP--TLKSSSSSSSSSSSSYMSEKRLQKQKQQQQQQQQQQMES--PL 573
Query: 580 ADHSIHAEER---KQLATGKLEAEMQSQETAESQAFFTSASQ 618
+D R + +A + E +F +S+SQ
Sbjct: 574 SDDKQQKANRIISEAIAKARERGEKNIPRVMSPDSFPSSSSQ 615
Score = 38 (18.4 bits), Expect = 1.5e-69, Sum P(2) = 1.5e-69
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 515 DTMKVQSSNDPSSAPGVTA 533
DTMK Q+S + S PG A
Sbjct: 71 DTMKAQTSME-QSFPGPDA 88
Score = 37 (18.1 bits), Expect = 6.5e-69, Sum P(3) = 6.5e-69
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 36 ILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAG 95
IL + G +S+ + S + + ++SS +P+ S G +T + G
Sbjct: 222 ILPNNSQQGHHNSLSVEGSSFHPTVAPGGHSQSKQYIESSMMPMASHQHTGFQATQRVQG 281
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 785 (281.4 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 756
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 757 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 816
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 817 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 917
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 918 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 977
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 978 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 1098 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1157
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1158 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1194
Score = 56 (24.8 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
P SL + + +E + GK+ K+K G + E + + ++ +S S +P K K
Sbjct: 44 PVSLPKKKKPKKLKENKCKGKR---KKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKK 100
Query: 216 NKV 218
K+
Sbjct: 101 KKL 103
Score = 53 (23.7 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+ + + +S S S N + +++ KD K+ KRK+ D
Sbjct: 78 NEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 117
Score = 45 (20.9 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S D+ S +S S + GKK+ +RK R D +E +++
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQD 344
Score = 37 (18.1 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 179 STKRKRGDSSISHEPQNEN 197
S KRK+G SS E + +
Sbjct: 282 SNKRKKGSSSEEDEREESD 300
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 785 (281.4 bits), Expect = 8.6e-74, Sum P(2) = 8.6e-74
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 629 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 688
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 689 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 748
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 749 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 806
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 807 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 849
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 850 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 909
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 910 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 969
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 970 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 1030 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1089
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1090 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1126
Score = 53 (23.7 bits), Expect = 8.6e-74, Sum P(2) = 8.6e-74
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+ + + +S S S N + +++ KD K+ KRK+ D
Sbjct: 10 NEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 49
Score = 46 (21.3 bits), Expect = 4.7e-73, Sum P(2) = 4.7e-73
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S D+ S +S S + GKK+ +RK R D +E +++
Sbjct: 221 SSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQD 276
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 779 (279.3 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 689 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 748
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 749 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 808
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 809 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 866
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 867 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 909
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 910 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 969
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 970 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1029
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1030 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1089
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1090 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1149
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1150 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1186
Score = 67 (28.6 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 16 HKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKS 74
HK ++ K L T ++H+ S H++ Y+ S+ M +I + +
Sbjct: 83 HKQVEQ-KSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPM 138
Query: 75 SRLPLTSGSQIGD-SSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
S++ G++ + S+ GS++ VA + A +AE ++ SS P+APSG
Sbjct: 139 SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 194
Score = 53 (23.7 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 540 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 578
Score = 50 (22.7 bits), Expect = 1.9e-72, Sum P(4) = 1.9e-72
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLP-APTVQHELVKDNDPTQFKSFG 703
+ A A+ + + +++ ++S T I P P P AP +Q ++ + K G
Sbjct: 165 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPPALPPPPAPEIQPPPIRRAKTKEGKGPG 224
Query: 704 H 704
H
Sbjct: 225 H 225
Score = 44 (20.5 bits), Expect = 1.9e-72, Sum P(4) = 1.9e-72
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSS-LDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
D + G+ R ES S T + ++ ++ +K + +RKRG+ H+
Sbjct: 28 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEGDGGHK 84
Score = 42 (19.8 bits), Expect = 6.0e-72, Sum P(3) = 6.0e-72
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR-IQREK 977
SE E ER DE ++ K E G ++Y +++ R HREK ++ +R K
Sbjct: 29 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREKREKKTKRRK 75
Score = 39 (18.8 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 281 SDLDSGSVHSASG--RPDGPVRAKKLKRG 307
Score = 37 (18.1 bits), Expect = 4.8e-72, Sum P(4) = 4.8e-72
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
E K H E E + + E YE E ++ ++ H
Sbjct: 372 EGKWSCPHCEKEGVQWEAKEEEEDYEEEGEEGEKEEEDDH 411
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 368 (134.6 bits), Expect = 1.3e-73, Sum P(5) = 1.3e-73
Identities = 74/156 (47%), Positives = 99/156 (63%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +L + HR L F+ MT++LD++E +L YRY+RLDG T DR L
Sbjct: 1365 CGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLL 1424
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+KFN+ D +F+LS R+GG+G+NL ADTVI +D+DWNP +D Q Q R HRIGQ RD
Sbjct: 1425 TEKFNR-DPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRD 1483
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
V + RF + T+E + A K + N I G F
Sbjct: 1484 VHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEF 1519
Score = 352 (129.0 bits), Expect = 1.3e-73, Sum P(5) = 1.3e-73
Identities = 94/272 (34%), Positives = 135/272 (49%)
Query: 1024 SMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
S++S+FENE DE+ S ++ E V + D+ E + ++ S + V P
Sbjct: 761 SISSNFENESDESMNSS--DR-ELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKDVPI-P 816
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+ L+G LR YQ GL WL SLYNN NGILADEMGLGKT+Q I+L+ YL + GP
Sbjct: 817 SLLRG-TLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPH 875
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMN 1203
WE E +AP + Y G P++R + K F+V +T+Y+ ++
Sbjct: 876 LIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQ 935
Query: 1204 KHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXX 1262
D+ + +W Y+I+DE H IKN S + A L ++ + +RLLLTGTP
Sbjct: 936 --DQQSFKRRRWTYMILDEAHNIKNFRSTRWRA-LLNFNTENRLLLTGTPLQNNLMELWS 992
Query: 1263 XXXXXXXXI---------FNSSEDFSQWFNKP 1285
F + +DF QWF KP
Sbjct: 993 LLYFLMPSSKVNQAMPEGFANLDDFQQWFGKP 1024
Score = 184 (69.8 bits), Expect = 1.3e-73, Sum P(5) = 1.3e-73
Identities = 52/145 (35%), Positives = 71/145 (48%)
Query: 1272 FNSSEDFSQWFNKPFE------SNG-----DNSPDXXXXXXXXXXXIINRLHQVLRPFVL 1320
F + +DF QWF KP S G D + + RLHQVLRP++L
Sbjct: 1011 FANLDDFQQWFGKPVNRILEQTSAGNSDLIDENERTTQKMDEETRNTVARLHQVLRPYLL 1070
Query: 1321 RRLKHKVENELPEKIERLVRCEASAYQKLL----MKRVE--ENLGSIGNSKGRSVHNSVM 1374
RRLK VE ++P K E +V C S Q+ L M R + E L S GN S+ N +M
Sbjct: 1071 RRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETLAS-GNFL--SIINCLM 1127
Query: 1375 ELRNICNHPYLSQLHAEEVDTLIPK 1399
+LR +CNHP L ++ +P+
Sbjct: 1128 QLRKVCNHPDLFEVRPIVTSFAMPR 1152
Score = 76 (31.8 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 28/143 (19%), Positives = 68/143 (47%)
Query: 951 VNKYVKEFHKRKERIHREKIDRIQR-EKINLLKI----NDVEGYLRMVQDAKSDRVNKLL 1005
++++ K+ KER+ +E+ +++ ++ + + N + +++Q+ K + + K+
Sbjct: 461 IDQHFKKKKGEKERLAKEREQNLKKMSRLTMQAVKKRWNQAQKVYQIIQNEKEEELKKI- 519
Query: 1006 KETEKYLQKL--GSKLQEAKSMASH---FENEMDETQTV-----SVVEKYEPAVENEDES 1055
K + + L ++L EA+ +S E E D+ T + + + + E E+E
Sbjct: 520 KGRQHLSEMLEHSTQLLEAQLTSSREPTVEAESDDNSTTFDDNTNDSDNFSSSEEEENEE 579
Query: 1056 DQAKHYLESNEKYYLMAHSIKES 1078
D + + N+KY + S E+
Sbjct: 580 DNTQQQINGNKKYDVNGKSNDEN 602
Score = 75 (31.5 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 39/169 (23%), Positives = 76/169 (44%)
Query: 934 KERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMV 993
KER + K+ R + V K + K + I EK + +++ K ++++ + +
Sbjct: 477 KEREQNLKKMSRLTMQAVKKRWNQAQKVYQIIQNEKEEELKKIK-GRQHLSEMLEHSTQL 535
Query: 994 QDAK--SDRVNKLLKETEKYLQKLGSKLQEAKSMAS--HFENEMDETQT-VSVVEKYEPA 1048
+A+ S R + E++ ++ + +S ENE D TQ ++ +KY+
Sbjct: 536 LEAQLTSSREPTVEAESDDNSTTFDDNTNDSDNFSSSEEEENEEDNTQQQINGNKKYDVN 595
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMS 1097
++ DE+D + E +KY + S+ E +S T K RE + S
Sbjct: 596 GKSNDENDMSLSVEELRKKYADLETSV-EPLSSNVT---SDKERESETS 640
Score = 54 (24.1 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 83/460 (18%), Positives = 171/460 (37%)
Query: 104 VKDSKAGLAENEMSKIEPFTSS---RPPV--APSGAGH-DYYQASGTHRSSQSFDHESPS 157
++ K L ++ + +PF ++ +P + A + A H DY A G S
Sbjct: 391 IERRKVILPQSNIKLTDPFRNTFSVKPKLHGAANNATHQDYLLAQGMAFSKVHQQMRKQH 450
Query: 158 SLDTRSANSQSQE--RQKDGKKASTKRKRGD-----SSISHEPQNENPQQLDSRNSVV-N 209
L TR + + ++K G+K ++R S ++ + + Q ++ N
Sbjct: 451 HLRTRKIAAMIDQHFKKKKGEKERLAKEREQNLKKMSRLTMQAVKKRWNQAQKVYQIIQN 510
Query: 210 PRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEK 269
++ ++ K+ KG + + M+ Q+ + L+ + + + + + T
Sbjct: 511 EKEEELKKI--------KGRQHLS-EMLEHSTQLLE-AQLTSSREPTVEAESDDNSTTFD 560
Query: 270 PLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN----RAGF 325
D+ N S++ S+S+ E E + Q GN NG + + R +
Sbjct: 561 --DNTNDSDNF---SSSEEEENEEDNTQQQINGNKKYDVNGKSNDENDMSLSVEELRKKY 615
Query: 326 PFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSS-YPTGELGSSALSP 384
+ V N+ + + T SS A + + G +S Y E+ A +
Sbjct: 616 ADLETSVEPLSSNVTSDKERESET-SSEDAESSDDDDTDVTRGLASLYQNDEVADFATTT 674
Query: 385 ----VESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRT 440
E + + E+ + ++S +L+ D S +++SD+ + + + + +
Sbjct: 675 FEYSAEEKKLIEDLNQESDSRMNS--LLDSD-SVSSISDSESSEESSSDTEMDQSTVSEP 731
Query: 441 MASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEI-ALGNIF 499
S +TG S+ +F+ + + + LE+ G I
Sbjct: 732 PRSSETG-SNTGLASLFTNGTIVSDEEDDVSISSNFENESDESMNSSDRELEVNGNGKID 790
Query: 500 PREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLG 539
+ D S E+V+ KV+ PS G PY + G
Sbjct: 791 KIASTDEDDSNVEIVNGSKVKDVPIPSLLRGTLRPYQKQG 830
Score = 51 (23.0 bits), Expect = 1.3e-73, Sum P(5) = 1.3e-73
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 710 NQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSD-GSRTIPV 768
NQ ++S ++S D +S ++S S D M + T + P+ S+ GS T +
Sbjct: 689 NQESDSRMNSLLDSDSVSSISDSESSEESS---SDTE-MDQSTVSEPPRSSETGSNT-GL 743
Query: 769 DNSVRNGISLTTEQDE 784
+ NG ++ E+D+
Sbjct: 744 ASLFTNGTIVSDEEDD 759
Score = 48 (22.0 bits), Expect = 1.3e-73, Sum P(5) = 1.3e-73
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
D + T ++ QS ++ S L T S S ++ + K ST KRG+ + S + E
Sbjct: 171 DEVKIESTFKAIQS-QEKAGSKLKTPSQTSNAKTNIR--KSGSTTPKRGNENGSRKQALE 227
Query: 197 NPQQL 201
+ ++
Sbjct: 228 DQDEI 232
Score = 45 (20.9 bits), Expect = 5.4e-73, Sum P(5) = 5.4e-73
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 687 QHELVKDNDPTQF---KSFGHSGASGNQHANSHLSSFSIRDQW-------KPVSG---TD 733
+ E +DN Q K + +G S +++ S LS +R ++ +P+S +D
Sbjct: 574 EEENEEDNTQQQINGNKKYDVNGKSNDENDMS-LSVEELRKKYADLETSVEPLSSNVTSD 632
Query: 734 SDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTD 792
+R S +DA + DD + G ++ ++ V + + T E E+K L D
Sbjct: 633 KERESETSSEDAES----SDDDDTDVTRGLASLYQNDEVADFATTTFEYSAEEKKLIED 687
Score = 44 (20.5 bits), Expect = 2.0e-40, Sum P(4) = 2.0e-40
Identities = 25/115 (21%), Positives = 51/115 (44%)
Query: 996 AKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDES 1055
+K D+++ ++ + + +L +L+E KS+ S E + ++E V+N D
Sbjct: 54 SKEDKLSDIIVDFNLAVNEL-YQLKEYKSIISWDPIENSSANDRGIKAEFEEFVKNNDYR 112
Query: 1056 DQAKHYLESNEKY-YLMAHSIKESVSEQPTCLQGG-KLREYQMSGLRWLV-SLYN 1107
+E+N L K+ ++EQ L +R+ ++ + L SL N
Sbjct: 113 LVWDKEIENNSNIDSLPLRFQKKKLAEQNKLLDDKFSIRQNVLASSKMLEESLVN 167
Score = 39 (18.8 bits), Expect = 1.1e-72, Sum P(5) = 1.1e-72
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 237 VPSGGQMEHFSSL---SGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRAS 284
+P G++ S+ +G +S + Q G+ ++ +++ SN + S
Sbjct: 1 MPENGRLRRTSARLTQNGTSTSSSTIYQNGKRTSQHAQETSTASNKKRKVS 51
Score = 39 (18.8 bits), Expect = 1.6e-58, Sum P(5) = 1.6e-58
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 1321 RRLKHKVENELPEKIERLV 1339
+RL+ + + E+ EK+E +V
Sbjct: 1234 QRLRREEQAEIKEKLEHVV 1252
Score = 38 (18.4 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 18/79 (22%), Positives = 35/79 (44%)
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
IVYC + +R L+ + + K L + +L + +L K+ H + E I
Sbjct: 1088 IVYCRLSKRQRFLYDDFMSRAKTKETLASGNFLSIINCLMQLRKVCNHPDLF-EVRPIVT 1146
Query: 1229 ASCKLNADLKHYQSSHRLL 1247
+ + +YQS++ L+
Sbjct: 1147 SFAMPRSIPSYYQSTNELV 1165
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 784 (281.0 bits), Expect = 1.5e-73, Sum P(2) = 1.5e-73
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 695 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 754
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 755 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQ 814
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 815 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 872
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 873 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 915
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 916 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 975
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 976 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1035
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 1036 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1095
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 1096 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1155
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1156 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1192
Score = 55 (24.4 bits), Expect = 1.4e-72, Sum P(3) = 1.4e-72
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 149 QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
+ F P SL + + + K GK+ K+K G + E + + ++ +S S
Sbjct: 37 EDFFPAEPVSLPKKKPKKLKESKSK-GKR---KKKEGSNDELSENEEDLEEKSESEGSDY 92
Query: 209 NPRKGKMNKV 218
+P K K K+
Sbjct: 93 SPTKKKKKKL 102
Score = 54 (24.1 bits), Expect = 1.5e-73, Sum P(2) = 1.5e-73
Identities = 35/133 (26%), Positives = 59/133 (44%)
Query: 968 EKIDRIQREKI-NLLKINDVE-GYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSM 1025
E++ R+ E++ N ++++ E G L +D L K+ K L++ SK + K
Sbjct: 9 EELPRLFAEEMENEEEMSEEEDGGLEGFEDFFPAEPVSLPKKKPKKLKESKSKGKRKKKE 68
Query: 1026 ASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTC 1085
S+ +E+ E + + EK E E D S K + EK A K E+
Sbjct: 69 GSN--DELSENEE-DLEEKSES--EGSDYSPTKKKKKKLKEKKEKKAKRKKRDEDEEDN- 122
Query: 1086 LQGGKLREYQMSG 1098
+ G L+E + SG
Sbjct: 123 -EDGGLKEPKSSG 134
Score = 48 (22.0 bits), Expect = 6.6e-73, Sum P(2) = 6.6e-73
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 180 TKRKRGDSSISHEPQNENPQQLDSRNSVVNPR----KGKMNK 217
+KRK+G SS EP++ + +S V GK NK
Sbjct: 281 SKRKKGSSSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNK 322
Score = 46 (21.3 bits), Expect = 1.2e-71, Sum P(3) = 1.2e-71
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
+ + + +S S S + +++ K+ K+ KRK+ D E NE+
Sbjct: 77 NEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDED---EEDNED 124
Score = 45 (20.9 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S LD S +S S + GKK +RK R D +E +++
Sbjct: 287 SSSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNKRRRKKKRIDDGDGYETDHQD 342
Score = 41 (19.5 bits), Expect = 1.4e-72, Sum P(3) = 1.4e-72
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 427 GRQNSVPGTAM-LRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLV 485
GR V G ++ R G SS P S + +R++C L +N
Sbjct: 265 GRGKRVAGLKFRFGGISKRKKGSSSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNKRR 324
Query: 486 PKKLHLE 492
KK ++
Sbjct: 325 RKKKRID 331
Score = 38 (18.4 bits), Expect = 7.5e-72, Sum P(2) = 7.5e-72
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 929 EIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKER-IHREKIDRIQRE 976
E+ ++E L+E + + + K K+ ++KE+ R+K D + +
Sbjct: 73 ELSENEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDEDEED 121
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 779 (279.3 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 903
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 904 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 961
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 962 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 1004
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 1005 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1064
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1065 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1124
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1125 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1184
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1185 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1244
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1245 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1281
Score = 67 (28.6 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 16 HKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKS 74
HK ++ K L T ++H+ S H++ Y+ S+ M +I + +
Sbjct: 178 HKQVEQ-KSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPM 233
Query: 75 SRLPLTSGSQIGD-SSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
S++ G++ + S+ GS++ VA + A +AE ++ SS P+APSG
Sbjct: 234 SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 289
Score = 53 (23.7 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 635 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 673
Score = 50 (22.7 bits), Expect = 2.8e-72, Sum P(4) = 2.8e-72
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLP-APTVQHELVKDNDPTQFKSFG 703
+ A A+ + + +++ ++S T I P P P AP +Q ++ + K G
Sbjct: 260 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPPALPPPPAPEIQPPPIRRAKTKEGKGPG 319
Query: 704 H 704
H
Sbjct: 320 H 320
Score = 46 (21.3 bits), Expect = 4.5e-72, Sum P(2) = 4.5e-72
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQ 1057
+E + M E E +E + E+ E A E+++E D+
Sbjct: 6 EEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEEDE 43
Score = 44 (20.5 bits), Expect = 2.8e-72, Sum P(4) = 2.8e-72
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSS-LDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
D + G+ R ES S T + ++ ++ +K + +RKRG+ H+
Sbjct: 123 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEGDGGHK 179
Score = 42 (19.8 bits), Expect = 8.1e-72, Sum P(3) = 8.1e-72
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR-IQREK 977
SE E ER DE ++ K E G ++Y +++ R HREK ++ +R K
Sbjct: 124 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREKREKKTKRRK 170
Score = 39 (18.8 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 376 SDLDSGSVHSASG--RPDGPVRAKKLKRG 402
Score = 39 (18.8 bits), Expect = 2.5e-71, Sum P(2) = 2.5e-71
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1031 NEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+E +E + + V E+ E E E+E D+ + +E+ ++
Sbjct: 3 DEEEEEEEMVVSEEEE---EEEEEGDEEEEEVEAADE 36
Score = 39 (18.8 bits), Expect = 2.5e-71, Sum P(2) = 2.5e-71
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
E E +E VS E+ E E ++E ++ + E +E+
Sbjct: 4 EEEEEEEMVVSEEEEEEEE-EGDEEEEEVEAADEDDEE 40
Score = 37 (18.1 bits), Expect = 7.3e-72, Sum P(4) = 7.3e-72
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
E K H E E + + E YE E ++ ++ H
Sbjct: 467 EGKWSCPHCEKEGVQWEAKEEEEDYEEEGEEGEKEEEDDH 506
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 779 (279.3 bits), Expect = 1.8e-73, Sum P(4) = 1.8e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 903
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 904 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 961
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 962 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 1004
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 1005 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1064
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1065 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1124
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1125 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1184
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1185 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1244
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1245 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1281
Score = 67 (28.6 bits), Expect = 1.8e-73, Sum P(4) = 1.8e-73
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 16 HKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKS 74
HK ++ K L T ++H+ S H++ Y+ S+ M +I + +
Sbjct: 178 HKQVEQ-KSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPM 233
Query: 75 SRLPLTSGSQIGD-SSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
S++ G++ + S+ GS++ VA + A +AE ++ SS P+APSG
Sbjct: 234 SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 289
Score = 53 (23.7 bits), Expect = 1.8e-73, Sum P(4) = 1.8e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 635 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 673
Score = 50 (22.7 bits), Expect = 3.2e-72, Sum P(4) = 3.2e-72
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLP-APTVQHELVKDNDPTQFKSFG 703
+ A A+ + + +++ ++S T I P P P AP +Q ++ + K G
Sbjct: 260 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPPALPPPPAPEIQPPPIRRAKTKEGKGPG 319
Query: 704 H 704
H
Sbjct: 320 H 320
Score = 46 (21.3 bits), Expect = 4.8e-72, Sum P(2) = 4.8e-72
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQ 1057
+E + M E E +E + E+ E A E+++E D+
Sbjct: 6 EEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEEDE 43
Score = 44 (20.5 bits), Expect = 3.2e-72, Sum P(4) = 3.2e-72
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSS-LDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
D + G+ R ES S T + ++ ++ +K + +RKRG+ H+
Sbjct: 123 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKREKKTKRRKRGEGDGGHK 179
Score = 42 (19.8 bits), Expect = 9.0e-72, Sum P(3) = 9.0e-72
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR-IQREK 977
SE E ER DE ++ K E G ++Y +++ R HREK ++ +R K
Sbjct: 124 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREKREKKTKRRK 170
Score = 39 (18.8 bits), Expect = 1.8e-73, Sum P(4) = 1.8e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 376 SDLDSGSVHSASG--RPDGPVRAKKLKRG 402
Score = 39 (18.8 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1031 NEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+E +E + + V E+ E E E+E D+ + +E+ ++
Sbjct: 3 DEEEEEEEMVVSEEEE---EEEEEGDEEEEEVEAADE 36
Score = 39 (18.8 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
E E +E VS E+ E E ++E ++ + E +E+
Sbjct: 4 EEEEEEEMVVSEEEEEEEE-EGDEEEEEVEAADEDDEE 40
Score = 37 (18.1 bits), Expect = 8.4e-72, Sum P(4) = 8.4e-72
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
E K H E E + + E YE E ++ ++ H
Sbjct: 467 EGKWSCPHCEKEGVQWEAKEEEEDYEEEGEEGEKEEEDDH 506
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 785 (281.4 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 560 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 619
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 620 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 679
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 680 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 737
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 738 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 780
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 781 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 840
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 841 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 900
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 901 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 960
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 961 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1020
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1021 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1057
Score = 51 (23.0 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S LD+ S +S S + GKK+ +RK R D +E +++
Sbjct: 152 SSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGDGYETDHQD 207
Score = 40 (19.1 bits), Expect = 2.6e-72, Sum P(2) = 2.6e-72
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 179 STKRKRGDSSISHEPQNENPQQLDS 203
S KRK+G SS E + E LDS
Sbjct: 145 SNKRKKGSSS--EEDEREE-SDLDS 166
Score = 39 (18.8 bits), Expect = 3.3e-72, Sum P(2) = 3.3e-72
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 211 RKGKMNKVDAPG-GFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRV--KQEGQNVT 267
RK K + PG +KG++ + G ++ G +S+ + E
Sbjct: 103 RKAKTKEGKGPGVRKKIKGSKDAKKK--GKGRKVAGLKFRFGGISNKRKKGSSSEEDERE 160
Query: 268 EKPLDSANVSNSVPRASNS 286
E LDSA++ +S R+ S
Sbjct: 161 ESDLDSASIHSSSVRSEGS 179
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 781 (280.0 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 792
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 793 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 852
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 853 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 953
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 954 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1013
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1014 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1073
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1194 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1230
Score = 63 (27.2 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 37 LQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-SSTAQCA 94
++H+ S H++ Y+ S+ M +I + + S++ G++ + S+
Sbjct: 147 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPMSKMMTILGAKWREFSANNPFK 203
Query: 95 GSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
GS++ VA + A +AE ++ SS P+APSG
Sbjct: 204 GSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 238
Score = 53 (23.7 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 584 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 622
Score = 43 (20.2 bits), Expect = 4.5e-71, Sum P(4) = 4.5e-71
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGH 704
+ A A+ + + +++ ++S T I P PA +Q ++ + K GH
Sbjct: 209 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGH 268
Query: 705 SGAS 708
S
Sbjct: 269 KRRS 272
Score = 42 (19.8 bits), Expect = 3.2e-72, Sum P(4) = 3.2e-72
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
E K H E E + + + YE E E E ++ ++E
Sbjct: 415 EGKWSCPHCEKEGVQWEAKEEDDDYEEEGEEEGEKEEEDDHME 457
Score = 42 (19.8 bits), Expect = 4.6e-72, Sum P(3) = 4.6e-72
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDR-IQREK 977
SE E ER DE ++ K E G ++Y +++ R HREK ++ +R K
Sbjct: 73 SEEEFGSER-DE-YREKSES--GGSEYGTGPGRKRRRKHREKKEKKTKRRK 119
Score = 39 (18.8 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 324 SDLDSGSVHSASG--RPDGPVRTKKLKRG 350
Score = 37 (18.1 bits), Expect = 4.5e-71, Sum P(4) = 4.5e-71
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR-KRGD 186
D + G+ R ES S + + + ++ K+ TKR K+G+
Sbjct: 72 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE 122
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 785 (281.4 bits), Expect = 2.4e-73, Sum P(2) = 2.4e-73
Identities = 192/519 (36%), Positives = 275/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 613 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 672
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 673 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 732
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 733 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 790
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 791 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 833
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 834 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 893
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 894 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 953
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 954 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1013
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1073
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1074 ITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1110
Score = 48 (22.0 bits), Expect = 2.4e-73, Sum P(2) = 2.4e-73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+S S S N + +++ KD K+ KRK+ D
Sbjct: 1 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 33
Score = 46 (21.3 bits), Expect = 4.0e-73, Sum P(2) = 4.0e-73
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S D+ S +S S + GKK+ +RK R D +E +++
Sbjct: 205 SSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQD 260
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 489 (177.2 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 146/484 (30%), Positives = 240/484 (49%)
Query: 935 ERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRI--QREKIN-----LLKINDVE 987
ERL+ K K E+ ++K KE +R+ + K++ + Q E + +K +++E
Sbjct: 509 ERLERDLKKKHEK-ELLDKAKKEEEEREAKRQSRKLNFLITQTELYSHFIGKKIKTDELE 567
Query: 988 GYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEP 1047
G + KS+ L +KY GS + ++ F+N+ +E + +
Sbjct: 568 G-TNADDNLKSNTKEHL----DKYADVDGSATHDINAV--DFDNDDEEALRRMAAQNAQN 620
Query: 1048 A---VENE----DESDQAKHYLESN-EKYYLMAHSIKESVS-EQPTCLQGGKLREYQMSG 1098
A V+N+ D S+++ ++N E+ ++ ++ QP L+ L+EYQ+ G
Sbjct: 621 ALIEVQNKAKQFDNSEESFKNPDTNGEEMNFQNPTLLGDITIPQPNMLKC-TLKEYQLKG 679
Query: 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESE 1158
L WL +LY +NGILADEMGLGKTVQ I+++ YL ET N GPF W+ E
Sbjct: 680 LNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQE 739
Query: 1159 INFWAPRIHKIVYCGPPEERR--RLF--KEKIVHQK---FNVLLTTYEYLMNKHDRPKLS 1211
I + P + Y G ++R+ R F ++ + + K F+VL+T+Y+ ++ D
Sbjct: 740 ITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVA--DIAYFQ 797
Query: 1212 KIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXI 1271
K++W Y+I+DE IK++S L + +RLLLTGTP I
Sbjct: 798 KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSI 857
Query: 1272 FNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENEL 1331
F+S ++FS WF K ES+ ++ + RLH +L+PF+LRR+K V++EL
Sbjct: 858 FDSHDEFSDWFAKDIESHAQSNTSLDEQQ-------LRRLHMILKPFMLRRIKKNVQSEL 910
Query: 1332 PEKIERLVRCEASAYQKLLMKRVEENLG----------SIGNSKGRSVHNSVMELRNICN 1381
+K+E V C+ + QK L +++ + S S S+ N VM+ R +CN
Sbjct: 911 GDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVCN 970
Query: 1382 HPYL 1385
HP L
Sbjct: 971 HPDL 974
Score = 353 (129.3 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 68/142 (47%), Positives = 95/142 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GKL LD LL LK HR+L + MTR++ + E+YL +K Y+Y+RLDG T+ R ++
Sbjct: 1236 GKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMV 1295
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
+ Q + FIF+LS RAGG+G+NL +ADTVI +D+DWNP +D QA RAHRIGQ + V
Sbjct: 1296 QAW-QTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQV 1354
Query: 1530 LVLRFETVQTVEEQVRASAEHK 1551
V R T T+E+++ A+ K
Sbjct: 1355 KVFRLVTRNTIEQKILERAKEK 1376
Score = 70 (29.7 bits), Expect = 6.4e-28, Sum P(4) = 6.4e-28
Identities = 20/88 (22%), Positives = 47/88 (53%)
Query: 958 FHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGS 1017
F KR ER+ R+ + ++E ++ K + E + +S ++N L+ +TE Y +G
Sbjct: 504 FWKRNERLERDLKKKHEKELLDKAKKEEEEREAKR----QSRKLNFLITQTELYSHFIGK 559
Query: 1018 KLQEAKSMASHFENEMDETQTVSVVEKY 1045
K++ + ++ ++ + ++ T ++KY
Sbjct: 560 KIKTDELEGTNADDNL-KSNTKEHLDKY 586
Score = 50 (22.7 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 26/118 (22%), Positives = 45/118 (38%)
Query: 86 GDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTH 145
G + AG+++ G D+ + + SK +P P G G Q +
Sbjct: 277 GTKDHSATAGTTASANG--SDTPDRRHQRQSSKPSTPILIKPKTEP-GKGSPEIQPRRSS 333
Query: 146 RSS---QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
R ++F+ E L+T S +Q+ +K + KR E Q ++ QQ
Sbjct: 334 RPKVKRKAFEDE----LETADKQSSTQQVKKSQESTGRDHKRVKIENKQEEQQQHQQQ 387
Score = 50 (22.7 bits), Expect = 5.0e-72, Sum P(4) = 5.0e-72
Identities = 27/148 (18%), Positives = 55/148 (37%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
S S D+ T +A Q Q++Q + +T G +S+S N L +S
Sbjct: 5 SMLSSDNNVSLKESTSTATDQQQQQQAESVDHATINGNGQTSVS-AVNNVQENHLSEFHS 63
Query: 207 VVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNV 266
N + + V + + + + ++H + N ++I +K++ ++
Sbjct: 64 S-NQQHSSIPPVGTTVEHATTTTTTATNHQPVNSSPLKHSVDENSNPTTISSLKKDTNSI 122
Query: 267 TEKPL-DSANVSNSVPRASNSKFPEEVE 293
L +S NS + K+ E
Sbjct: 123 IASILPESYQFDNSYTPTIDQKYKSVFE 150
Score = 48 (22.0 bits), Expect = 4.6e-73, Sum P(3) = 4.6e-73
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 620 LESASTRGTLAITN-PVNDVENGHLFIGRANVASVTGINKPMNSEINS 666
+E A+T T A + PVN H +N +++ + K NS I S
Sbjct: 78 VEHATTTTTTATNHQPVNSSPLKHSVDENSNPTTISSLKKDTNSIIAS 125
Score = 43 (20.2 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 18/83 (21%), Positives = 35/83 (42%)
Query: 118 KIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKK 177
+I+P SSRP V A D + + S+Q S+ R E +++ ++
Sbjct: 326 EIQPRRSSRPKVKRK-AFEDELETADKQSSTQQVKKSQEST--GRDHKRVKIENKQEEQQ 382
Query: 178 ASTKRKRGDSSISHEPQNENPQQ 200
++++ D E + E Q+
Sbjct: 383 QHQQQQQADEEDEAEAEAEAEQK 405
Score = 37 (18.1 bits), Expect = 5.0e-72, Sum P(4) = 5.0e-72
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 413 SSNTLSDANRAVQVGRQNSVPGTAMLRTMAS 443
+++T D+N+AV + +A T AS
Sbjct: 260 TTSTTDDSNKAVAAAANGTKDHSATAGTTAS 290
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 780 (279.6 bits), Expect = 2.9e-73, Sum P(4) = 2.9e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 792
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 793 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 852
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 853 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 953
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 954 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1013
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1014 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1194 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1230
Score = 63 (27.2 bits), Expect = 2.9e-73, Sum P(4) = 2.9e-73
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 37 LQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-SSTAQCA 94
++H+ S H++ Y+ S+ M +I + + S++ G++ + S+
Sbjct: 147 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPMSKMMTILGAKWREFSANNPFK 203
Query: 95 GSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
GS++ VA + A +AE ++ SS P+APSG
Sbjct: 204 GSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 238
Score = 53 (23.7 bits), Expect = 2.9e-73, Sum P(4) = 2.9e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 584 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 622
Score = 48 (22.0 bits), Expect = 9.6e-73, Sum P(4) = 9.6e-73
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
E K H E E + + E+YE E E E ++ ++E
Sbjct: 415 EGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHME 457
Score = 44 (20.5 bits), Expect = 1.1e-71, Sum P(4) = 1.1e-71
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 156 PSSLDT--RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
PS+L R + Q+ K GK K++ + E ++E ++ +S S G
Sbjct: 42 PSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSE-RDEYREKSESGGSEYGTGPG 100
Query: 214 KMNK 217
+ +
Sbjct: 101 RKRR 104
Score = 43 (20.2 bits), Expect = 1.1e-71, Sum P(4) = 1.1e-71
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGH 704
+ A A+ + + +++ ++S T I P PA +Q ++ + K GH
Sbjct: 209 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGH 268
Query: 705 SGAS 708
S
Sbjct: 269 KRRS 272
Score = 39 (18.8 bits), Expect = 2.9e-73, Sum P(4) = 2.9e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 324 SDLDSGSVHSASG--RPDGPVRTKKLKRG 350
Score = 37 (18.1 bits), Expect = 5.7e-71, Sum P(4) = 5.7e-71
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR-KRGD 186
D + G+ R ES S + + + ++ K+ TKR K+G+
Sbjct: 72 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE 122
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 453 (164.5 bits), Expect = 3.4e-73, Sum P(4) = 3.4e-73
Identities = 107/299 (35%), Positives = 156/299 (52%)
Query: 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXX 1150
LREYQ GL WLV++ +LNGILADEMGLGKT+Q IAL+ +L K + GP
Sbjct: 914 LREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSS 973
Query: 1151 XXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210
WE E W P + Y G +ER+ F+V +T+Y+ ++ D+
Sbjct: 974 VMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQ--DQQSF 1031
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXX 1270
+ +W Y+I+DE IKN + L ++ + RLLLTGTP
Sbjct: 1032 RRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPY 1091
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENE 1330
+F+S +F +WF+ P + + + +I RLH+V+RPF+LRRLK +VE +
Sbjct: 1092 VFSSHREFKEWFSNPMTGMIEGNMEYNET-------LITRLHKVIRPFLLRRLKKEVEKQ 1144
Query: 1331 LPEKIERLVRCEASAYQKLL----MKRVE--ENLGSIGNSKGRSVHNSVMELRNICNHP 1383
+P+K E ++ C S Q+ L M R + E L + GN SV N +M+LR +CNHP
Sbjct: 1145 MPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQT-GNLL--SVINVLMQLRKVCNHP 1200
Score = 399 (145.5 bits), Expect = 3.4e-73, Sum P(4) = 3.4e-73
Identities = 92/218 (42%), Positives = 131/218 (60%)
Query: 1351 MKRVEENLGSIGNSKGRSVHNSVME-LRNICNHPYLSQLHA--EEVDTLIPKHYLPPIVR 1407
++R +NL S + + N V + LR P L+ LH E+ T P P +++
Sbjct: 1603 IRRYVQNLSSTHWQHEQRIENIVDQALR-----PKLALLHPIISEMTTKFPD---PRLIQ 1654
Query: 1408 L-CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466
CGKL+ +DRLL +LK HRVL F+ MT++LDV+E +L + + YLRLDG T R
Sbjct: 1655 YDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQ 1714
Query: 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526
L+++FN D F F+LS R+GGVG+NL ADTVI +D+DWNP +D QAQ R HRIGQ
Sbjct: 1715 ILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQT 1773
Query: 1527 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
RDV + R + +T+E + A K +++ +I G F
Sbjct: 1774 RDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNF 1811
Score = 62 (26.9 bits), Expect = 3.4e-73, Sum P(4) = 3.4e-73
Identities = 36/146 (24%), Positives = 69/146 (47%)
Query: 948 WRGVNKYVKEFHKRK-ERIHREKIDRIQREKINLL-KIND--VEGYLRMVQDA---KSDR 1000
W V K V+ H+ K E ++ +D+ ++ K + VEG + V D S R
Sbjct: 589 WSNVEKLVEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQLVEGMNKSVADTPSLNSSR 648
Query: 1001 VNKLLKETEK-YLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE-SDQA 1058
+ +E++ + + GS+ E +++A E+ D + V+ + K E ++ +D +D
Sbjct: 649 LTSPKRESDDDFRPESGSEDDE-ETIAKAEEDAADVKEEVTALAK-ESEMDFDDFLNDLP 706
Query: 1059 KHYLESNEKYYLMAHSIKESV-SEQP 1083
YLE+ +K LM ++ +E P
Sbjct: 707 PGYLENRDK--LMKEEQSSAIKTETP 730
Score = 62 (26.9 bits), Expect = 2.9e-72, Sum P(4) = 2.9e-72
Identities = 31/141 (21%), Positives = 60/141 (42%)
Query: 62 INQNGLDMEALKSSRL--PLTSGS-----QIGDSSTAQCAGSSSQVAGVVKDSKAGLA-E 113
+N++ D +L SSRL P + G + + + A VK+ LA E
Sbjct: 634 MNKSVADTPSLNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEEDAADVKEEVTALAKE 693
Query: 114 NEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQK 173
+EM + F + PP G + + +SS + E+P D+ + +++E
Sbjct: 694 SEMD-FDDFLNDLPP----GYLENRDKLMKEEQSS-AIKTETPD--DSDDSEFEAKEASD 745
Query: 174 DGKKASTKRKRGDSSISHEPQ 194
D + +K++ + I H+ +
Sbjct: 746 DDENTISKQEEAEQEIDHKKE 766
Score = 56 (24.8 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 401 MLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSV 451
+L SG+VL+ +S ++ N A++ NSV T T AS TG SV
Sbjct: 1330 LLPSGRVLKRVSAS--INPVNMALKPVVINSVVTTTSSSTTASSPTGALSV 1378
Score = 52 (23.4 bits), Expect = 8.0e-73, Sum P(3) = 8.0e-73
Identities = 52/246 (21%), Positives = 94/246 (38%)
Query: 86 GDSSTAQCAGSSSQVAGVVKDSKAGLA-ENEMSKIEPFTSSRPPVAPSGAGHDYYQASGT 144
G + + + A VK+ LA E+EM + F + PP + +
Sbjct: 665 GSEDDEETIAKAEEDAADVKEEVTALAKESEMD-FDDFLNDLPPGYLENRDKLMKEEQSS 723
Query: 145 HRSSQSFDHESPSSLDTRSANSQSQE---RQKDGKKASTKRKRGDSSISHEPQNE-NPQQ 200
+++ D S + + A+ + +Q++ ++ +K D E N+ + +Q
Sbjct: 724 AIKTETPDDSDDSEFEAKEASDDDENTISKQEEAEQEIDHKKEIDEL---EADNDLSVEQ 780
Query: 201 LDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVK 260
L ++ P K K+ AP + + S V S + E ++ S ++
Sbjct: 781 LLAKYKSEQPPSPKRRKL-APRDPELDSDDDST--AVDSTEESEDAATEDEEDLSTVKTD 837
Query: 261 --QEGQNVTEKPLDS----------ANVSNSVPRASNSK---FPEEVEVSASGQQQGNSL 305
E Q+ E L S A S S AS +K + ++ S Q +GN+L
Sbjct: 838 TDMEEQDEQEDGLKSLMADADATSGAAGSGSTAGASGNKDDMLNDAAALAESLQPKGNTL 897
Query: 306 SSANGV 311
SS N V
Sbjct: 898 SSTNVV 903
Score = 51 (23.0 bits), Expect = 4.7e-72, Sum P(4) = 4.7e-72
Identities = 24/107 (22%), Positives = 46/107 (42%)
Query: 985 DVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEK 1044
D + +L + + +KL+KE + K + S E D+ T+S E+
Sbjct: 697 DFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQEE 756
Query: 1045 YEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKL 1091
E ++++ E D+ LE++ + + + SEQP + KL
Sbjct: 757 AEQEIDHKKEIDE----LEADNDLSV-EQLLAKYKSEQPPSPKRRKL 798
Score = 49 (22.3 bits), Expect = 7.6e-72, Sum P(4) = 7.6e-72
Identities = 25/110 (22%), Positives = 48/110 (43%)
Query: 997 KSDRVNKLLKETEKYLQKLGSKLQEA--------KSMASHFENEMDE--TQTVSVVE-KY 1045
K + K K +KY Q + Q A K +AS E+ + +VE K+
Sbjct: 541 KKNAAKKCAKMVQKYFQDKATAAQRAEKAQELQLKRVASFIAREVKSFWSNVEKLVEYKH 600
Query: 1046 EPAVENEDES--DQAKHYL-ESNEKY-YLMAHSIKESVSEQPTCLQGGKL 1091
+ +E + + DQ ++ + EK+ + + +SV++ P+ L +L
Sbjct: 601 QTKIEEKRKQALDQHLSFIVDQTEKFSQQLVEGMNKSVADTPS-LNSSRL 649
Score = 48 (22.0 bits), Expect = 3.4e-73, Sum P(4) = 3.4e-73
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 379 SSALSPVESQLFSTNRGDETSAMLSSG-KVLEHDGSSNTLSDANRAVQVGRQNSVP---G 434
S+A + ++Q ++T + D + L SG G+ + +N V+ Q+ VP G
Sbjct: 257 SAAAAAAQNQKYTTQQTDSVESSLVSGIGTGATKGAPLDGNISNSTVKTNTQSQVPSKIG 316
Query: 435 TAMLRTMASRDTGKSSVSQTPVFSG 459
+ T A+ ++ S+ SG
Sbjct: 317 SFTESTPAATESNSSTTVPGTATSG 341
Score = 48 (22.0 bits), Expect = 1.8e-70, Sum P(5) = 1.8e-70
Identities = 26/133 (19%), Positives = 57/133 (42%)
Query: 724 DQWKPVSGTDSDRYSLIPVK-DASGMLRHTS----QDDPKFSDGSRTIPVDNSVRNGISL 778
D ++P SG++ D ++ + DA+ + + + + F D +P + N L
Sbjct: 658 DDFRPESGSEDDEETIAKAEEDAADVKEEVTALAKESEMDFDDFLNDLP-PGYLENRDKL 716
Query: 779 TTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKL 838
E E+ ++ T++P + E K ++N I KQ++ +Q + K
Sbjct: 717 MKE--EQSSAIKTETPDDSDDSEFEA------KEASDDDENTISKQEEAEQEID--HKKE 766
Query: 839 KESVSSSEDISAK 851
+ + + D+S +
Sbjct: 767 IDELEADNDLSVE 779
Score = 46 (21.3 bits), Expect = 1.5e-36, Sum P(4) = 1.5e-36
Identities = 26/122 (21%), Positives = 48/122 (39%)
Query: 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526
A + K Q PFF + +G G L + + + A + GQ+
Sbjct: 1397 AKVAKTMQDGKPFFYLTPATNSGAAGARLTLTSKTTASASTTTSRTTVTASTTS---GQQ 1453
Query: 1527 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK 1586
++R V+ + V+++ + K +AN + T AED + E L + +K
Sbjct: 1454 ----LIRDPIVKDLATHVKSTVQ-KQSIANGKTEP---EEETEAEDPYKVQE--LIQMRK 1503
Query: 1587 EE 1588
E+
Sbjct: 1504 EQ 1505
Score = 39 (18.8 bits), Expect = 2.9e-72, Sum P(4) = 2.9e-72
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 995 DAKSD-RVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
+A +D V +LL + K Q K ++ +++ D T S E + A E+E+
Sbjct: 771 EADNDLSVEQLLAKY-KSEQPPSPKRRKLAPRDPELDSDDDSTAVDSTEESEDAATEDEE 829
Query: 1054 ESDQAKHYLESNEK 1067
+ K + E+
Sbjct: 830 DLSTVKTDTDMEEQ 843
Score = 39 (18.8 bits), Expect = 8.4e-71, Sum P(4) = 8.4e-71
Identities = 22/119 (18%), Positives = 49/119 (41%)
Query: 938 DEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAK 997
D F+ K N K+ +E H+++ID ++ + N L + + + Q
Sbjct: 735 DSEFEAKEASDDDENTISKQEEAEQEIDHKKEIDELEAD--NDLSVEQLLAKYKSEQPPS 792
Query: 998 SDRVNKLLKETEKYLQKLGSKL---QEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
R ++ E + + +E++ A+ E ++ +T + +E+ + E ED
Sbjct: 793 PKRRKLAPRDPELDSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQD---EQED 848
Score = 37 (18.1 bits), Expect = 4.7e-72, Sum P(4) = 4.7e-72
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 767 PVDNSVRNGISLTTEQDEEDKSL--HTDSPPA 796
P+D ++ N T Q + + T+S PA
Sbjct: 293 PLDGNISNSTVKTNTQSQVPSKIGSFTESTPA 324
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 780 (279.6 bits), Expect = 3.7e-73, Sum P(4) = 3.7e-73
Identities = 193/519 (37%), Positives = 273/519 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKT+Q I + L + + +GPF
Sbjct: 792 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 851
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVHQ 1189
WE E WAP+ + + Y G + R ++ FK K Q
Sbjct: 852 PLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQ 911
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ H+LLL
Sbjct: 912 VKFHVLLTSYELITI--DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 1012
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 1013 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG 1072
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +++ GKL +L ++L KLK
Sbjct: 1073 NQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN + F FL
Sbjct: 1133 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1192
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF T +VEE+
Sbjct: 1193 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1252
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
+ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1253 ITQVAKRKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1289
Score = 63 (27.2 bits), Expect = 3.7e-73, Sum P(4) = 3.7e-73
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 37 LQHMKSSGKEHSMP-YQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-SSTAQCA 94
++H+ S H++ Y+ S+ M +I + + S++ G++ + S+
Sbjct: 206 VEHVFSEEDYHTLTNYKAFSQFMRPLIAKKN---PKIPMSKMMTILGAKWREFSANNPFK 262
Query: 95 GSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSG 133
GS++ VA + A +AE ++ SS P+APSG
Sbjct: 263 GSAAAVAAAAAAAAAAVAE----QVSAAVSSATPIAPSG 297
Score = 53 (23.7 bits), Expect = 3.7e-73, Sum P(4) = 3.7e-73
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK----HYLESNEKYY 1069
+N+MDE + Y E++ +SD+ K HY E EKYY
Sbjct: 643 KNDMDEPPPLD----YGSG-EDDGKSDKRKVKDPHYAEMEEKYY 681
Score = 48 (22.0 bits), Expect = 1.2e-72, Sum P(4) = 1.2e-72
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLE 1063
E K H E E + + E+YE E E E ++ ++E
Sbjct: 474 EGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHME 516
Score = 46 (21.3 bits), Expect = 3.8e-72, Sum P(2) = 3.8e-72
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESDQ 1057
MAS +E +E + + V E+ E E DE ++
Sbjct: 1 MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEE 33
Score = 44 (20.5 bits), Expect = 6.1e-72, Sum P(2) = 6.1e-72
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 1020 QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESD 1056
+E + + S E E +E E+ E A E+++E D
Sbjct: 11 EEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDD 47
Score = 44 (20.5 bits), Expect = 1.3e-71, Sum P(4) = 1.3e-71
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 156 PSSLDT--RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
PS+L R + Q+ K GK K++ + E ++E ++ +S S G
Sbjct: 101 PSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSE-RDEYREKSESGGSEYGTGPG 159
Query: 214 KMNK 217
+ +
Sbjct: 160 RKRR 163
Score = 43 (20.2 bits), Expect = 1.3e-71, Sum P(4) = 1.3e-71
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 645 IGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGH 704
+ A A+ + + +++ ++S T I P PA +Q ++ + K GH
Sbjct: 268 VAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGH 327
Query: 705 SGAS 708
S
Sbjct: 328 KRRS 331
Score = 39 (18.8 bits), Expect = 3.7e-73, Sum P(4) = 3.7e-73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRG 185
S LD+ S +S S + DG + K KRG
Sbjct: 383 SDLDSGSVHSASG--RPDGPVRTKKLKRG 409
Score = 37 (18.1 bits), Expect = 7.2e-71, Sum P(4) = 7.2e-71
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR-KRGD 186
D + G+ R ES S + + + ++ K+ TKR K+G+
Sbjct: 131 DSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGE 181
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 763 (273.6 bits), Expect = 4.7e-73, Sum P(3) = 4.7e-73
Identities = 184/486 (37%), Positives = 265/486 (54%)
Query: 1078 SVSEQPTCL---QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + +G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 465 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 524
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WA +++ +VY G R + + H + L
Sbjct: 525 HEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRL 584
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 585 KFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 644 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 685
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 686 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 745
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + + + + L ++R GKL +LD+LL +L+
Sbjct: 746 SGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 804
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 805 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 864
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE +
Sbjct: 865 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILE 924
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 925 RAKKKM 930
Score = 79 (32.9 bits), Expect = 4.7e-73, Sum P(3) = 4.7e-73
Identities = 42/146 (28%), Positives = 60/146 (41%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNSSGESSQSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSE 63
Query: 119 IEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT-RSA--NSQSQERQKDG 175
E TS V QA F SPS L RSA Q Q++Q+
Sbjct: 64 SESDTSRENKV----------QAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQ 113
Query: 176 KKASTKRKRGDSSISHEPQNENPQQL 201
+AS+ + S S E +++ ++
Sbjct: 114 HQASSNSGSEEDSSSSEDSDDSSSEV 139
Score = 77 (32.2 bits), Expect = 7.6e-73, Sum P(3) = 7.6e-73
Identities = 35/145 (24%), Positives = 59/145 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNSSGESSQSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPP---APKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQR 830
+G +E D ++ PP ++ S I+ +Q+ +L +Q +QQ+ +Q
Sbjct: 58 SGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQ---QQQQQQQH 114
Query: 831 MSTCFNKLKESVSSSEDISAKTKSV 855
++ + +E SSSED + V
Sbjct: 115 QASSNSGSEEDSSSSEDSDDSSSEV 139
Score = 68 (29.0 bits), Expect = 5.6e-73, Sum P(2) = 5.6e-73
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 130 APSGAGHDYYQASGTHRSS---QSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+PS +G D +SS D+E + + +R Q++ + K+GKK ++KR
Sbjct: 156 SPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKP--QNRSKSKNGKKILGQKKRQI 213
Query: 187 SSISHEPQNENPQQLDSRNS 206
S S E +E D R+S
Sbjct: 214 DS-SEEDDDEEDYDNDKRSS 232
Score = 59 (25.8 bits), Expect = 5.0e-72, Sum P(2) = 5.0e-72
Identities = 39/176 (22%), Positives = 69/176 (39%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ + + SSQS D +S S+ + S +S DG + + DS
Sbjct: 3 GHSDEESVRNSSGESSQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
Q+E+ SR + V + K++ + S+ ++S Q + S
Sbjct: 60 SQSESESDT-SRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASS 118
Query: 252 NMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
N S +E + +E DS + S+ V R + ++ S S Q G+ S
Sbjct: 119 NSGS-----EEDSSSSE---DSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES 166
Score = 57 (25.1 bits), Expect = 8.2e-72, Sum P(2) = 8.2e-72
Identities = 25/99 (25%), Positives = 40/99 (40%)
Query: 107 SKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQS-FDHESPSSLDTRSAN 165
S +G +E + S E S V + +Q SG+ SQS D ES + S +
Sbjct: 118 SNSG-SEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCD 176
Query: 166 SQSQERQKDGKKASTK-RKRGDSSISHEPQNENPQQLDS 203
+ + K S K + R S + + +Q+DS
Sbjct: 177 ETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDS 215
Score = 53 (23.7 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDK--SG 577
QS +D SA G + G++ + G S S E+ S S+ + +K +
Sbjct: 19 QSDDDSGSASG-SGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAK 77
Query: 578 PP-ADHSIHAEERKQ-LATGK---LEAEMQSQETAESQAFFTSASQQLESAS 624
PP D + + LA + L+ + Q Q+ + QA S S++ S+S
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSS 129
Score = 52 (23.4 bits), Expect = 3.2e-70, Sum P(3) = 3.2e-70
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQT 454
DE S SSG+ + D S + S + G +S G++ + D+G S SQ+
Sbjct: 6 DEESVRNSSGESSQSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSDSGSESGSQS 62
Score = 40 (19.1 bits), Expect = 4.7e-73, Sum P(3) = 4.7e-73
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
D+ S+ K K+ + + GS Q S E E +++ YEP + +
Sbjct: 134 DSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES--EEEREKSSCDETESDYEPKNKVKSR 191
Query: 1055 SDQAKHYLESNEK 1067
Q + ++ +K
Sbjct: 192 KPQNRSKSKNGKK 204
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 763 (273.6 bits), Expect = 7.0e-73, Sum P(3) = 7.0e-73
Identities = 184/486 (37%), Positives = 266/486 (54%)
Query: 1078 SVSEQPTCL---QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + +G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 477 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 536
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WA +++ +VY G R + + +H + L
Sbjct: 537 HEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 596
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 597 KFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 655
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 656 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 697
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 698 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 757
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + + + + L ++R GKL +LD+LL +L+
Sbjct: 758 SGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 816
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 817 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 876
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE +
Sbjct: 877 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILE 936
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 937 RAKKKM 942
Score = 75 (31.5 bits), Expect = 7.0e-73, Sum P(3) = 7.0e-73
Identities = 40/144 (27%), Positives = 59/144 (40%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNSSGESSQSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSE 63
Query: 119 IEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT-RSANSQSQERQKDGKK 177
E S V QA F SPS L RSA + Q++Q+ +
Sbjct: 64 SESDNSRDNKV----------QAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHQ 113
Query: 178 ASTKRKRGDSSISHEPQNENPQQL 201
AS+ + S S E +++ ++
Sbjct: 114 ASSNSGSEEDSSSSEDSDDSSSEV 137
Score = 74 (31.1 bits), Expect = 9.0e-73, Sum P(3) = 9.0e-73
Identities = 37/144 (25%), Positives = 58/144 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNSSGESSQSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILK--QQKTKQRM 831
+G +E D + + P PK +E W L V+++ +LK QQ+ +Q
Sbjct: 58 SGSQSESESDNS-RDNKVQAKP-PKVDGAEFW--KSSPSILAVQRSAMLKKQQQQQQQHQ 113
Query: 832 STCFNKLKESVSSSEDISAKTKSV 855
++ + +E SSSED + V
Sbjct: 114 ASSNSGSEEDSSSSEDSDDSSSEV 137
Score = 71 (30.1 bits), Expect = 4.9e-72, Sum P(3) = 4.9e-72
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 130 APSGAGHDYYQASGTHRSSQSFDHESPSSLD----TRSANSQSQERQKDGKKASTKRKRG 185
+PS +G D S R S D E+ S + +S Q++ + K+GKK ++KR
Sbjct: 154 SPSQSGSD--SESEEERDKSSCD-ETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQ 210
Query: 186 DSSISHEPQNENPQQLDSRNS 206
S E +E D R+S
Sbjct: 211 IDSSEEEDDDEEEYDNDKRSS 231
Score = 63 (27.2 bits), Expect = 3.3e-71, Sum P(3) = 3.3e-71
Identities = 40/176 (22%), Positives = 72/176 (40%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ + + SSQS D +S S+ + S +S DG + + DS
Sbjct: 3 GHSDEESVRNSSGESSQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
Q+E+ +SR++ V + K++ + S+ ++S Q +H S
Sbjct: 60 SQSESESD-NSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQH--QASS 116
Query: 252 NMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
N S +E + +E DS + S+ V R + ++ S S Q G+ S
Sbjct: 117 NSGS-----EEDSSSSE---DSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES 164
Score = 60 (26.2 bits), Expect = 6.9e-71, Sum P(3) = 6.9e-71
Identities = 26/99 (26%), Positives = 40/99 (40%)
Query: 107 SKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQS-FDHESPSSLDTRSAN 165
S +G +E + S E S V + +Q SG+ SQS D ES D S +
Sbjct: 116 SNSG-SEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCD 174
Query: 166 SQSQERQKDGKKASTK-RKRGDSSISHEPQNENPQQLDS 203
+ + K S K + R S + + +Q+DS
Sbjct: 175 ETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDS 213
Score = 52 (23.4 bits), Expect = 1.8e-70, Sum P(3) = 1.8e-70
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQT 454
DE S SSG+ + D S + S + G +S G++ + D+G S SQ+
Sbjct: 6 DEESVRNSSGESSQSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSDSGSESGSQS 62
Score = 51 (23.0 bits), Expect = 2.3e-70, Sum P(3) = 2.3e-70
Identities = 26/110 (23%), Positives = 46/110 (41%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK-EVENLK--MMDKS 576
QS +D SA G + G++ + G S S E+ S S+ E +N + +
Sbjct: 19 QSDDDSGSASG-SGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRDNKVQAK 77
Query: 577 GPPADHSIHAEERKQLATGKLEAEM--QSQETAESQAFFTSASQQLESAS 624
P D + + + + A + Q Q+ + QA S S++ S+S
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHQASSNSGSEEDSSSS 127
Score = 48 (22.0 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 34/178 (19%), Positives = 68/178 (38%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
S + D ASG+ S S SS + S++S S ++ + R + +
Sbjct: 18 SQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRDNKVQAK 77
Query: 192 EPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
P+ + + S S++ ++ M K + Q++ N SG + + SS
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAMLKKQQ----QQQQQHQASSN---SGSEEDSSSSEDS 130
Query: 252 NMSS--ILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
+ SS + R K + ++ S + S S + + + + S + N + S
Sbjct: 131 DDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDYEPKNKVKS 188
Score = 44 (20.5 bits), Expect = 7.0e-73, Sum P(3) = 7.0e-73
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
D+ S+ K K+ + + GS Q S E E D++ YEP + +
Sbjct: 132 DSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES--EEERDKSSCDETESDYEPKNKVKSR 189
Query: 1055 SDQAKHYLESNEK 1067
Q + ++ +K
Sbjct: 190 KPQNRSKSKNGKK 202
Score = 40 (19.1 bits), Expect = 1.8e-72, Sum P(3) = 1.8e-72
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
K L +K Q+ L+ A + N E T + ++Y+ VE + Q K YL
Sbjct: 346 KKLDNYKKKDQETKRWLKNASPEDVEYYNCQQEL-TDDLHKQYQ-IVERIIDKIQCKIYL 403
Query: 1063 ESNEKYYLMAHSIKESVSEQP 1083
YL AHS ++S + P
Sbjct: 404 -----VYLTAHSNQKSAAGYP 419
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 484 (175.4 bits), Expect = 7.1e-73, Sum P(4) = 7.1e-73
Identities = 133/397 (33%), Positives = 186/397 (46%)
Query: 1001 VNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDE----TQTVSVVEKYEPAVENEDESD 1056
+ +L E+E L +L KL + KS +N +E + E ++ +D +
Sbjct: 689 LEELKLESEMPLDELLKKLDQEKSDNDDDDNNNNEDDNNNNNNNNNNNNENSISTKDIIN 748
Query: 1057 QAKHYLESNEK--YYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGIL 1114
S++ + L +++ V P L+ LREYQ GL WLVSLY LNGIL
Sbjct: 749 IVSKKANSSQPTGFTLNTSNVRTKV---PFLLKF-PLREYQHIGLDWLVSLYEKNLNGIL 804
Query: 1115 ADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGP 1174
ADEMGLGKT+ I+LI YL K GP WE E W P + Y G
Sbjct: 805 ADEMGLGKTIMTISLIAYLAVQKGVWGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGT 864
Query: 1175 PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234
+R+ K F+V +T+Y +M+ H + K W Y+I+DE H IKN +
Sbjct: 865 SRDRKANRKGWSKSNAFHVCITSYSMVMSDHLIFRRKK--WVYMILDEAHVIKNFKTQRW 922
Query: 1235 ADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSP 1294
++ H+ + RLLLTGTP IF S +F WF+ P +
Sbjct: 923 QNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVTGMIEGGD 982
Query: 1295 DXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV 1354
D IINRLH VLRPF+LRRLK VE ++P K +V C S QK L +
Sbjct: 983 DVNED-------IINRLHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEF 1035
Query: 1355 EENLGSIGN-SKGR--SVHNSVMELRNICNHPYLSQL 1388
+ + S G S+ N +M+LR +CNHP L ++
Sbjct: 1036 INSSSTQSTLSSGSFFSIINILMQLRKVCNHPDLFEI 1072
Score = 379 (138.5 bits), Expect = 7.1e-73, Sum P(4) = 7.1e-73
Identities = 76/156 (48%), Positives = 98/156 (62%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL +LK HR L F+ MT++LD+ E +L Y YLRLDG T R L
Sbjct: 1378 CGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVL 1437
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
++FN D F+F+LS R+GG+G+NL ADTVI +DTDWNP +D QAQ R HRIGQ R+
Sbjct: 1438 TERFNT-DPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTRE 1496
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
V + RF T T+EE + + K + I AG F
Sbjct: 1497 VNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEF 1532
Score = 72 (30.4 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 30/137 (21%), Positives = 61/137 (44%)
Query: 931 EAHKERL-DEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGY 989
E K+++ V K R+ W + K V+ K++IH++ I++I+R+K L + E Y
Sbjct: 558 ENRKKKVASNVSKEIRKFWNQIKKLVQY----KDKIHQDSINKIERDKQLELIVGKTEAY 613
Query: 990 LRMVQDAKSDRVNKLLKETEK-YLQKLGSKLQEAKSMASHFE--NEMDETQTVSVVEKYE 1046
++ + + T K L + + E + + + N DE+ +
Sbjct: 614 SNLLAENLRGHHHHHSTITPKDLLNQFDHDVDEDGNEIEYNDDFNTSDESSCDLSDDNIN 673
Query: 1047 PAVENEDESDQAKHYLE 1063
+++ E ++K YLE
Sbjct: 674 EEEDDDGEQLESKEYLE 690
Score = 54 (24.1 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 47/206 (22%), Positives = 77/206 (37%)
Query: 111 LAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQE 170
LAEN ++ P + HD + + F+ SS D N ++E
Sbjct: 617 LAENLRGHHHHHSTITPKDLLNQFDHDVDEDGNEIEYNDDFNTSDESSCDLSDDNI-NEE 675
Query: 171 RQKDGKKASTKRKRGDSSISHE-PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGA 229
DG++ +K + + E P +E ++LD S + N+ D
Sbjct: 676 EDDDGEQLESKEYLEELKLESEMPLDELLKKLDQEKSDNDDDDNNNNEDD---------- 725
Query: 230 EQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFP 289
+N N + E+ S ++ +I+ K T L+++NV VP KFP
Sbjct: 726 --NNNNNNNNNNNNENSISTK-DIINIVSKKANSSQPTGFTLNTSNVRTKVPFLL--KFP 780
Query: 290 EEVEVSASGQQQGNSL--SSANGVLA 313
E G SL + NG+LA
Sbjct: 781 LR-EYQHIGLDWLVSLYEKNLNGILA 805
Score = 50 (22.7 bits), Expect = 7.1e-73, Sum P(4) = 7.1e-73
Identities = 23/97 (23%), Positives = 36/97 (37%)
Query: 756 DPKFSDGSRTIPVDNS---VRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKR 812
DP +D S I DN + N +S T +D + + + P+ T S +
Sbjct: 13 DPIVTDESMNID-DNGGDQIHNALSPTLSEDTVTSNTNPTTTTTPRQTRSSLSLSSPSID 71
Query: 813 KLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDIS 849
+ +K + ST NK SSS + S
Sbjct: 72 NTIALATATNSSKKRSRSNSTSKNKSNTGSSSSTNPS 108
Score = 47 (21.6 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 146 RSSQSFDHES-PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
RSS S S +++ +A + S++R + + K G SS ++ +P S
Sbjct: 60 RSSLSLSSPSIDNTIALATATNSSKKRSRSNSTSKNKSNTGSSSSTNPSPMGSPTLSTST 119
Query: 205 NSVVN 209
+++N
Sbjct: 120 INLLN 124
Score = 44 (20.5 bits), Expect = 7.1e-73, Sum P(4) = 7.1e-73
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 980 LLKINDVEGYLRMVQDAKSD-RVNKLLKETEK---YLQKLGSKLQEAKSMASHFENEMDE 1035
L++I V + +++ AK D ++ + + E +K + K KL E H+++ ++E
Sbjct: 456 LIQIPPVS--MDIIEKAKEDAKIMRRIHELQKKGVWGYKQLQKLPEPPRPKVHWDHLLEE 513
Query: 1036 TQTVS 1040
TVS
Sbjct: 514 MATVS 518
Score = 37 (18.1 bits), Expect = 2.2e-37, Sum P(4) = 2.2e-37
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1459 HTSGGDRGALIDKFNQQDSPFFIFLL 1484
+ +G ++ + D+ QQ PF LL
Sbjct: 2418 NNNGNNKSPIGDQQQQQQPPFQFSLL 2443
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 790 (283.2 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 224/649 (34%), Positives = 320/649 (49%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K E +
Sbjct: 339 EKDPRIA-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVT 396
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +PA E ES Q ++ E+ A + + +
Sbjct: 397 HYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVER---PASDSWQKLEKSR 453
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + + GPF
Sbjct: 454 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPF 512
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF+
Sbjct: 513 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH 571
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KI W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 572 VVITTFEMILA--DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 630 LQNSVEELFSLLNFLEPSQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 672
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + +KG + HN
Sbjct: 673 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--TKGANQHN 730
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--DTL------IPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ D P L +++ GKL ++D+
Sbjct: 731 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDK 790
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 791 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 850
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 851 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 910
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 911 NSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME-VEDLLRK 958
Score = 48 (22.0 bits), Expect = 6.6e-72, Sum P(3) = 6.6e-72
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 782 QDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKES 841
+D E K P PK K ++ K +++ K +K ++ T + KE
Sbjct: 112 KDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGT--KEAKEK 169
Query: 842 VSSSEDISAKTKS 854
S + D +A+TKS
Sbjct: 170 RSCT-DSAARTKS 181
Score = 45 (20.9 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
E + + + A + +QKDG K + RK ++S + E + E DS + RK
Sbjct: 129 EPRKAKEPKKAKEHKEPKQKDGAKKA--RKPREASGTKEAK-EKRSCTDSA-ARTKSRKA 184
Query: 214 KMNKVDAPGGFSVKGAEQS 232
+ P KG +S
Sbjct: 185 SKEQGPTPVEKKKKGKRKS 203
Score = 43 (20.2 bits), Expect = 6.6e-72, Sum P(3) = 6.6e-72
Identities = 22/97 (22%), Positives = 41/97 (42%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
+S +FD++SPS D S QE + + + ++ + E P+++ S N
Sbjct: 26 ASVNFDYKSPSPFDC----STDQEEKIEDVASHCLPQKDLYTAEEEAATLFPRKMTSHNG 81
Query: 207 VVNPRKG-----KMNKVDAPGGFSVKGAEQSNFNMVP 238
+ + G K K PG +GA + + + P
Sbjct: 82 MEDSGGGGTGVKKKRKKKEPG--DQEGAAKGSKDREP 116
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 773 (277.2 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 192/529 (36%), Positives = 274/529 (51%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ G+ WL ++N + ILADEMGLGKTVQ + + LM+ + +GPF
Sbjct: 613 GGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAA 672
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERR------------------RLFKEKIVHQ 1189
WE E W P + + Y G E R ++ K K +
Sbjct: 673 PLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLEN 732
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ LS I W +++DE HR+KN +L+ Y +R+LL
Sbjct: 733 LKFHVLLTSYECI--NMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLL 790
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN E F+ F++ S D I
Sbjct: 791 TGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSEI--SKEDQ---------------I 833
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKG- 1366
+LH +L P +LRRLK V +P K E +VR E SA QK K + N ++ G
Sbjct: 834 EKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGG 893
Query: 1367 --RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +MEL+ CNHPYL E L Y +++ GK +L ++L KLK
Sbjct: 894 TQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLK 953
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT +LD++ED+ + Y+Y R+DG +G R ID++N + F+FL
Sbjct: 954 DGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFL 1013
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T +VEE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEER 1073
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR----ECKKEE 1588
+ + A+ K+ + + + AG + + + E L+ +LR E KEE
Sbjct: 1074 ITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEELFKEE 1121
Score = 59 (25.8 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 36/137 (26%), Positives = 56/137 (40%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN- 195
D A G H + E ++T SQ + KK K+K+G S + N
Sbjct: 18 DSMLAEG-HEDGEEDVGEDEEEVETEE--SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNC 74
Query: 196 ENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSS 255
+ P S ++ ++ G + VD EQ F + + +++FSSL
Sbjct: 75 DYPDPYKSTSAEISAAIG-LTDVDVD-------YEQEEFQSITN---LKNFSSLV--KPY 121
Query: 256 ILRVKQEGQNVTEK-PL 271
IL+V G NVT+ PL
Sbjct: 122 ILKVNP-GTNVTKMYPL 137
Score = 51 (23.0 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 23/119 (19%), Positives = 55/119 (46%)
Query: 934 KERLDEVFKIKRERWRGVNKYVKEF-HKRKERIHREKIDRIQREKINLLKIN-DVEGYLR 991
+ER + + +K E W +++ + + + ++ + K + E + + D+ Y
Sbjct: 488 RERFYQ-YGVKPE-WMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDTDIANYED 545
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMD----ETQTVSVVEKYE 1046
+ R L E + +QK+ +K +EAK + E+E+ + + + +++KYE
Sbjct: 546 AIIKYWHHRERMLNDEVPRNVQKMIAKQREAKGLGPK-EDEVTSRRKKREKIDILKKYE 603
Score = 45 (20.9 bits), Expect = 9.1e-72, Sum P(4) = 9.1e-72
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 933 HKERL--DEVFK-----IKRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIN 984
H+ER+ DEV + I ++R +G+ E R+++ REKID +++ ++ I+
Sbjct: 553 HRERMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKK--REKIDILKKYEVQPDFIS 610
Query: 985 DVEGYLRMVQ 994
+ G L Q
Sbjct: 611 ETGGNLHPYQ 620
Score = 45 (20.9 bits), Expect = 1.3e-71, Sum P(3) = 1.3e-71
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 753 SQDDPKFSDGSRTIPVDNSVRNGISLTTEQD--EEDKSLHTD-SPPAPKYTMSEKWIMDM 809
S D + DG T+ D+ + G E+D E+++ + T+ S P T SEK
Sbjct: 2 SDDQHESIDGDETMEEDSMLAEGHE-DGEEDVGEDEEEVETEESQGVP--TTSEKKKPPP 58
Query: 810 QKRK 813
+K+K
Sbjct: 59 KKKK 62
Score = 40 (19.1 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 722 IRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDP 757
+R W+ V DS+ P+ + S + RH S DP
Sbjct: 455 VRMYWRKV---DSENP---PIFEESTLSRHHSDHDP 484
Score = 38 (18.4 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 20/102 (19%), Positives = 44/102 (43%)
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNM 236
++S +RKR D S +++ Q+ ++ ++ + + ++ + KG E++ N
Sbjct: 183 RSSARRKRRDGSDGEGGGHDSDQEFEA---LIKQHEKQQDEAE-------KGKEEARINR 232
Query: 237 VPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSN 278
+ + S S R K++G V E ++ V N
Sbjct: 233 AAAKVDKRKAALESARASKRAR-KEQGV-VEENHQENCEVCN 272
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 773 (277.2 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 192/529 (36%), Positives = 274/529 (51%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ G+ WL ++N + ILADEMGLGKTVQ + + LM+ + +GPF
Sbjct: 613 GGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAA 672
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERR------------------RLFKEKIVHQ 1189
WE E W P + + Y G E R ++ K K +
Sbjct: 673 PLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLEN 732
Query: 1190 -KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ LS I W +++DE HR+KN +L+ Y +R+LL
Sbjct: 733 LKFHVLLTSYECI--NMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLL 790
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN E F+ F++ S D I
Sbjct: 791 TGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSEI--SKEDQ---------------I 833
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKG- 1366
+LH +L P +LRRLK V +P K E +VR E SA QK K + N ++ G
Sbjct: 834 EKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGG 893
Query: 1367 --RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +MEL+ CNHPYL E L Y +++ GK +L ++L KLK
Sbjct: 894 TQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLK 953
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT +LD++ED+ + Y+Y R+DG +G R ID++N + F+FL
Sbjct: 954 DGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFL 1013
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T +VEE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEER 1073
Query: 1544 VRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR----ECKKEE 1588
+ + A+ K+ + + + AG + + + E L+ +LR E KEE
Sbjct: 1074 ITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEELFKEE 1121
Score = 59 (25.8 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 36/137 (26%), Positives = 56/137 (40%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN- 195
D A G H + E ++T SQ + KK K+K+G S + N
Sbjct: 18 DSMLAEG-HEDGEEDVGEDEEEVETEE--SQGVPTTSEKKKPPPKKKKGGKKSSKKKNNC 74
Query: 196 ENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSS 255
+ P S ++ ++ G + VD EQ F + + +++FSSL
Sbjct: 75 DYPDPYKSTSAEISAAIG-LTDVDVD-------YEQEEFQSITN---LKNFSSLV--KPY 121
Query: 256 ILRVKQEGQNVTEK-PL 271
IL+V G NVT+ PL
Sbjct: 122 ILKVNP-GTNVTKMYPL 137
Score = 51 (23.0 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 23/119 (19%), Positives = 55/119 (46%)
Query: 934 KERLDEVFKIKRERWRGVNKYVKEF-HKRKERIHREKIDRIQREKINLLKIN-DVEGYLR 991
+ER + + +K E W +++ + + + ++ + K + E + + D+ Y
Sbjct: 488 RERFYQ-YGVKPE-WMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDTDIANYED 545
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMD----ETQTVSVVEKYE 1046
+ R L E + +QK+ +K +EAK + E+E+ + + + +++KYE
Sbjct: 546 AIIKYWHHRERMLNDEVPRNVQKMIAKQREAKGLGPK-EDEVTSRRKKREKIDILKKYE 603
Score = 45 (20.9 bits), Expect = 9.1e-72, Sum P(4) = 9.1e-72
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 933 HKERL--DEVFK-----IKRERW-RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIN 984
H+ER+ DEV + I ++R +G+ E R+++ REKID +++ ++ I+
Sbjct: 553 HRERMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKK--REKIDILKKYEVQPDFIS 610
Query: 985 DVEGYLRMVQ 994
+ G L Q
Sbjct: 611 ETGGNLHPYQ 620
Score = 45 (20.9 bits), Expect = 1.3e-71, Sum P(3) = 1.3e-71
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 753 SQDDPKFSDGSRTIPVDNSVRNGISLTTEQD--EEDKSLHTD-SPPAPKYTMSEKWIMDM 809
S D + DG T+ D+ + G E+D E+++ + T+ S P T SEK
Sbjct: 2 SDDQHESIDGDETMEEDSMLAEGHE-DGEEDVGEDEEEVETEESQGVP--TTSEKKKPPP 58
Query: 810 QKRK 813
+K+K
Sbjct: 59 KKKK 62
Score = 40 (19.1 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 722 IRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDP 757
+R W+ V DS+ P+ + S + RH S DP
Sbjct: 455 VRMYWRKV---DSENP---PIFEESTLSRHHSDHDP 484
Score = 38 (18.4 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 20/102 (19%), Positives = 44/102 (43%)
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNM 236
++S +RKR D S +++ Q+ ++ ++ + + ++ + KG E++ N
Sbjct: 183 RSSARRKRRDGSDGEGGGHDSDQEFEA---LIKQHEKQQDEAE-------KGKEEARINR 232
Query: 237 VPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSN 278
+ + S S R K++G V E ++ V N
Sbjct: 233 AAAKVDKRKAALESARASKRAR-KEQGV-VEENHQENCEVCN 272
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 776 (278.2 bits), Expect = 2.9e-72, Sum P(3) = 2.9e-72
Identities = 193/520 (37%), Positives = 274/520 (52%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM-ETKNDRGPFXXX 1146
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L E + +GP+
Sbjct: 628 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVS 687
Query: 1147 XXXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFKEKIVH 1188
WE E WAP + + Y G E R +++F+ K
Sbjct: 688 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEA 747
Query: 1189 Q-KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
Q KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LL
Sbjct: 748 QIKFHVLLTSYELITI--DQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLL 805
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
LTGTP FN+ E F + F D S +
Sbjct: 806 LTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ---------- 848
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGN 1363
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 849 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGG 908
Query: 1364 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKL 1422
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL
Sbjct: 909 GNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKL 968
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F F
Sbjct: 969 RDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1028
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF T +VEE
Sbjct: 1029 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEE 1088
Query: 1543 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1089 RITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1126
Score = 54 (24.1 bits), Expect = 2.9e-72, Sum P(3) = 2.9e-72
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+ + + +S S S N + +++ K+ K+ TKRK+ D
Sbjct: 9 NDEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKD 48
Score = 45 (20.9 bits), Expect = 2.9e-72, Sum P(3) = 2.9e-72
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYY 1069
+N+MDE E + + E ++ HY + E++Y
Sbjct: 476 KNDMDEPPAFDYGSGDEDS-QREKRKNKDPHYAKMEERFY 514
Score = 40 (19.1 bits), Expect = 8.4e-71, Sum P(3) = 8.4e-71
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GK--KASTKRKRGDSSISHEPQNEN 197
SS + S D+ S NS S + GK K K+KR + +E +++
Sbjct: 219 SSSEEEEREESDFDSASINSSSVRSECSAGLGKRGKRRRKKKRIEEGDGYETDHQD 274
Score = 37 (18.1 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 180 TKRKRGDSSISHEPQNENPQQLDSRNS 206
+KRK+G SS E + E+ S NS
Sbjct: 213 SKRKKGSSS-EEEEREESDFDSASINS 238
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 774 (277.5 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 209/586 (35%), Positives = 301/586 (51%)
Query: 1028 HFENEMDETQTVSV---VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
H E++++E +V + K+ A + D+ K + EK I++ QP
Sbjct: 541 HRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKK--KKREKI-----DIRKKYEVQPD 593
Query: 1085 CLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
+ GGKL YQ+ GL WL ++N + ILADEMGLGKTVQ + + LM+ + +GP
Sbjct: 594 YVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGP 653
Query: 1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIV--------- 1187
F WE E W P + + Y G + R L F E V
Sbjct: 654 FLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKM 713
Query: 1188 ----HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243
+ KF+VLLT+YE + D+ LS I+W +++DE HR+KN +L Y
Sbjct: 714 KTTENMKFHVLLTSYETI--NMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIH 771
Query: 1244 HRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXX 1303
+R+LLTGTP FN E F+ FN+ S D
Sbjct: 772 YRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEI--SKEDQ----------- 818
Query: 1304 XXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIG 1362
I +LH +L P +LRRLK V +P K E +VR E SA QK K + N ++
Sbjct: 819 ----IEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALN 874
Query: 1363 NSKG---RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEMLD 1416
G S+ N +MEL+ CNHPYL + AE ++ K+ + +++ GK +L
Sbjct: 875 VKNGGTQMSLMNVLMELKKCCNHPYLF-VKAE-LEAPKEKNGMYEGTALIKNSGKFVLLQ 932
Query: 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476
++L KLK HRVL FS MTR+LD+MED ++ YRY R+DG G R ID++N
Sbjct: 933 KMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPG 992
Query: 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 1536
+ FIFLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T
Sbjct: 993 AQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVT 1052
Query: 1537 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
++VEE++ + A+ K+ + + + AG + E L+ +LR
Sbjct: 1053 KKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLR 1097
Score = 58 (25.5 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 22/116 (18%), Positives = 57/116 (49%)
Query: 934 KERLDEVFKIKRERWRGVNKYVK-EFHKRKERIHREKIDRIQREKINLLKIN-DVEGYLR 991
+ER + + IK E W +++ + + + + ++ + K + ++ + + ++ Y
Sbjct: 476 RERFYQ-YGIKPE-WMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWERDDSNIANYEE 533
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMA-SHFENEMDETQTVSVVEKYE 1046
+ R +KL ++ K +QK+ +K +EAK + E + + + + + +KYE
Sbjct: 534 AIIKYWQHRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKKKKREKIDIRKKYE 589
Score = 52 (23.4 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 30/148 (20%), Positives = 59/148 (39%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAF---FTS 615
+A ++E E + D++GP ++ RK+ G + +S A + S
Sbjct: 24 DATEETEEEEEQEQGDEAGP-SERK--RSSRKKGGKGGKKGSKKSAAAASKVEIPDPYNS 80
Query: 616 ASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNE 675
S+++ +A + +T+ D + F G +N+ + + I KP E N T +
Sbjct: 81 TSEEVCAA-----IGLTDVEFDYDEEE-FQGISNLKTFSSIIKPQILEANPGTNVSKM-- 132
Query: 676 VPRRPLPAPTVQHELVKDNDPTQFKSFG 703
P + Q + P Q ++ G
Sbjct: 133 YPMFQVKYKEYQDHMAAQGKPVQKQARG 160
Score = 47 (21.6 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 752 TSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEK 804
++++DP D ++ + SV + TE++EE + ++ P+ + S K
Sbjct: 2 STEEDPSLVDAEESME-EGSVTQDATEETEEEEEQEQ-GDEAGPSERKRSSRK 52
Score = 37 (18.1 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLES 1579
A+ + L +N+ T D AE + EYL S
Sbjct: 1131 AAVDALLDRSNKEETPAGEDGEEKAEWQNEYLSS 1164
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 774 (277.5 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 209/586 (35%), Positives = 301/586 (51%)
Query: 1028 HFENEMDETQTVSV---VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
H E++++E +V + K+ A + D+ K + EK I++ QP
Sbjct: 541 HRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKK--KKREKI-----DIRKKYEVQPD 593
Query: 1085 CLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
+ GGKL YQ+ GL WL ++N + ILADEMGLGKTVQ + + LM+ + +GP
Sbjct: 594 YVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGP 653
Query: 1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIV--------- 1187
F WE E W P + + Y G + R L F E V
Sbjct: 654 FLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKM 713
Query: 1188 ----HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243
+ KF+VLLT+YE + D+ LS I+W +++DE HR+KN +L Y
Sbjct: 714 KTTENMKFHVLLTSYETI--NMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIH 771
Query: 1244 HRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXX 1303
+R+LLTGTP FN E F+ FN+ S D
Sbjct: 772 YRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEI--SKEDQ----------- 818
Query: 1304 XXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIG 1362
I +LH +L P +LRRLK V +P K E +VR E SA QK K + N ++
Sbjct: 819 ----IEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALN 874
Query: 1363 NSKG---RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEMLD 1416
G S+ N +MEL+ CNHPYL + AE ++ K+ + +++ GK +L
Sbjct: 875 VKNGGTQMSLMNVLMELKKCCNHPYLF-VKAE-LEAPKEKNGMYEGTALIKNSGKFVLLQ 932
Query: 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476
++L KLK HRVL FS MTR+LD+MED ++ YRY R+DG G R ID++N
Sbjct: 933 KMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPG 992
Query: 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 1536
+ FIFLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T
Sbjct: 993 AQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVT 1052
Query: 1537 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
++VEE++ + A+ K+ + + + AG + E L+ +LR
Sbjct: 1053 KKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLR 1097
Score = 58 (25.5 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 22/116 (18%), Positives = 57/116 (49%)
Query: 934 KERLDEVFKIKRERWRGVNKYVK-EFHKRKERIHREKIDRIQREKINLLKIN-DVEGYLR 991
+ER + + IK E W +++ + + + + ++ + K + ++ + + ++ Y
Sbjct: 476 RERFYQ-YGIKPE-WMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWERDDSNIANYEE 533
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMA-SHFENEMDETQTVSVVEKYE 1046
+ R +KL ++ K +QK+ +K +EAK + E + + + + + +KYE
Sbjct: 534 AIIKYWQHRESKLNEDIPKNVQKMIAKHREAKGLPPKEDEKKKKKREKIDIRKKYE 589
Score = 52 (23.4 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 30/148 (20%), Positives = 59/148 (39%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAF---FTS 615
+A ++E E + D++GP ++ RK+ G + +S A + S
Sbjct: 24 DATEETEEEEEQEQGDEAGP-SERK--RSSRKKGGKGGKKGSKKSAAAASKVEIPDPYNS 80
Query: 616 ASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNE 675
S+++ +A + +T+ D + F G +N+ + + I KP E N T +
Sbjct: 81 TSEEVCAA-----IGLTDVEFDYDEEE-FQGISNLKTFSSIIKPQILEANPGTNVSKM-- 132
Query: 676 VPRRPLPAPTVQHELVKDNDPTQFKSFG 703
P + Q + P Q ++ G
Sbjct: 133 YPMFQVKYKEYQDHMAAQGKPVQKQARG 160
Score = 47 (21.6 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 752 TSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEK 804
++++DP D ++ + SV + TE++EE + ++ P+ + S K
Sbjct: 2 STEEDPSLVDAEESME-EGSVTQDATEETEEEEEQEQ-GDEAGPSERKRSSRK 52
Score = 37 (18.1 bits), Expect = 4.2e-72, Sum P(4) = 4.2e-72
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLES 1579
A+ + L +N+ T D AE + EYL S
Sbjct: 1131 AAVDALLDRSNKEETPAGEDGEEKAEWQNEYLSS 1164
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 794 (284.6 bits), Expect = 6.4e-72, Sum P(3) = 6.4e-72
Identities = 225/649 (34%), Positives = 320/649 (49%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K E +
Sbjct: 338 EKDPRIA-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVT 395
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +PA E ES Q ++ E+ A + + +
Sbjct: 396 HYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVER---PASDSWQKLEKSR 452
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + + GPF
Sbjct: 453 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPF 511
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF+
Sbjct: 512 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH 570
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KI W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 571 VVITTFEMILA--DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 628
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 629 LQNSVEELFSLLNFLEPSQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 671
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + SKG + HN
Sbjct: 672 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--SKGANQHN 729
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--DTL------IPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ D P L +++ GKL ++D+
Sbjct: 730 MPNLINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDK 789
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 790 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 849
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 850 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 909
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 910 NSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME-VEDLLRK 957
Score = 50 (22.7 bits), Expect = 6.4e-72, Sum P(3) = 6.4e-72
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
K++G+ +E ++S + +P S + PEE SA Q++
Sbjct: 195 KKKGKRKSETAVESLELDQGLPNPS-LRSPEESTESADSQKR 235
Score = 44 (20.5 bits), Expect = 2.7e-71, Sum P(3) = 2.7e-71
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
E + + R A + +QKDG K T++ R S P+ E ++ ++ +
Sbjct: 129 EPRKAKEPRKAKEPREPKQKDGTK-KTRKPREASG----PR-EAKEKRGGPDAAARTKSR 182
Query: 214 KMNKVDAPGGFSVKGAEQSNFNMVPS 239
K +K P K ++ + V S
Sbjct: 183 KASKEQGPTPVEKKKGKRKSETAVES 208
Score = 37 (18.1 bits), Expect = 6.4e-72, Sum P(3) = 6.4e-72
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 147 SSQSFDHESPSSLD 160
+S +FD+ SPS D
Sbjct: 26 ASVNFDYTSPSPFD 39
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 785 (281.4 bits), Expect = 6.7e-72, Sum P(2) = 6.7e-72
Identities = 221/649 (34%), Positives = 317/649 (48%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K + +
Sbjct: 136 EKDPRIS-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPDTGEEVT 193
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +P E E+ Q ++ E+ A + + +
Sbjct: 194 HYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIPPEIKHMER---PASESWQKLEKSR 250
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + GPF
Sbjct: 251 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPF 309
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF
Sbjct: 310 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQ 368
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KIQW ++IDE HR+KN +CKL LK H++LLTGTP
Sbjct: 369 VVITTFEMILA--DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 426
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 427 LQNSVEELFSLLNFLEPQQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 469
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + SKG + HN
Sbjct: 470 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--SKGANQHN 527
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ P L +++ GKL ++D+
Sbjct: 528 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDK 587
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 588 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 647
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 648 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 707
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 708 NSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME-VEDLLRK 755
Score = 38 (18.4 bits), Expect = 6.7e-72, Sum P(2) = 6.7e-72
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
D S ++QS E + + A ++++R + NE+
Sbjct: 11 DLLSPSAQSPE--ESAESADSQKRRSGRQVKRRKYNED 46
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 785 (281.4 bits), Expect = 6.7e-72, Sum P(2) = 6.7e-72
Identities = 221/649 (34%), Positives = 317/649 (48%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMAS 1027
EK RI +KI + N + + D N E ++ L+ +K + +
Sbjct: 136 EKDPRIS-QKIKRFR-NKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPDTGEEVT 193
Query: 1028 HFENEMD----ETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
H+ + E T + E +P E E+ Q ++ E+ A + + +
Sbjct: 194 HYLVKWCSLPYEESTWELEEDVDPVKIKEFEALQIPPEIKHMER---PASESWQKLEKSR 250
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+LREYQ+ G+ WL+ + N+ N ILADEMGLGKT+Q I + + GPF
Sbjct: 251 EYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPF 309
Query: 1144 XXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----------KFN 1192
WE E W ++ IVY G R+ + + ++V++ KF
Sbjct: 310 LIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQ 368
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
V++TT+E ++ D P+L KIQW ++IDE HR+KN +CKL LK H++LLTGTP
Sbjct: 369 VVITTFEMILA--DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 426
Query: 1253 XXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
F S F + F GD + + +L
Sbjct: 427 LQNSVEELFSLLNFLEPQQFPSETAFLEEF-------GDLKTEEQ----------VKKLQ 469
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVHN 1371
+L+P +LRRLK VE L K E ++ E + QK + + E+N + SKG + HN
Sbjct: 470 SILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL--SKGANQHN 527
Query: 1372 ------SVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLEMLDR 1417
++MELR CNHPYL E++ P L +++ GKL ++D+
Sbjct: 528 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDK 587
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F + DS
Sbjct: 588 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 647
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R T
Sbjct: 648 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 707
Query: 1538 QTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
+ E ++ A KLG+ Q I N + E +E LLR+
Sbjct: 708 NSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME-VEDLLRK 755
Score = 38 (18.4 bits), Expect = 6.7e-72, Sum P(2) = 6.7e-72
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 160 DTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
D S ++QS E + + A ++++R + NE+
Sbjct: 11 DLLSPSAQSPE--ESAESADSQKRRSGRQVKRRKYNED 46
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 772 (276.8 bits), Expect = 8.6e-72, Sum P(2) = 8.6e-72
Identities = 192/527 (36%), Positives = 274/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQ+ GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 725 QPDYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 784
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 785 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKA 844
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D+ L I W +++DE HR+KN K L +Y
Sbjct: 845 SKMKKEAAVKFHVLLTSYELITI--DQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNY 902
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP FN+ E F + F D + +
Sbjct: 903 PLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADIAKEDQ--- 952
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 953 -------IKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL A E + Y + + GKL +L
Sbjct: 1006 ALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLMLL 1065
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L KLK HRVL FS MT++LD++ED+L + Y+Y R+DG +GG R ID+FN
Sbjct: 1066 FKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAP 1125
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+P F+FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1126 GAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1185
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + + ++E L+ +L+
Sbjct: 1186 TKASVEERITQVAKKKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILK 1230
Score = 50 (22.7 bits), Expect = 8.6e-72, Sum P(2) = 8.6e-72
Identities = 27/108 (25%), Positives = 45/108 (41%)
Query: 953 KYVKEFHKRKERIHR-EKIDRIQREKINLLKINDVEGYLRMVQ-DAKSDRVNKLLKETEK 1010
K K+ +K R R K ++ RE+I + +E +RM + + + DRV + E
Sbjct: 29 KSKKKKKAKKSRESRTSKRQKVIREEIAVSSPEVMEA-IRMAEGEEEEDRVMRSESEGSD 87
Query: 1011 YLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEPAVENEDESD 1056
Y K + + S + E S ++ EP E ED+ D
Sbjct: 88 YAPSKKKK-KRSSSSKDRKKGSAGEKAGGSGGKSKRKEPEPEEEDDDD 134
Score = 50 (22.7 bits), Expect = 8.6e-72, Sum P(2) = 8.6e-72
Identities = 27/124 (21%), Positives = 55/124 (44%)
Query: 75 SRLPLTSGSQIGDSSTAQ-CAGSSSQVAGVVKDSKAGLAENEMSKIE------PFTSSRP 127
S++ + G++ + ST GS+S A + + A E+ ++K++ P ++ P
Sbjct: 192 SKMMMVLGAKWREFSTNNPMRGSASANAALAAANVAAAVESMVTKVDAGGGGGPALATAP 251
Query: 128 PV---APSGAGHDYYQASGTH-RSSQSFDHESPSSLDTRSANSQSQERQKDGKK-ASTKR 182
P AP A Q R +++ + + P++ + Q+++ KK A K
Sbjct: 252 PTTTAAPVAAPPPPQQPPAVPLRKAKTKEGKGPNARRKTKPTPKPQDKKSKAKKVAPLKI 311
Query: 183 KRGD 186
K G+
Sbjct: 312 KLGN 315
Score = 48 (22.0 bits), Expect = 1.4e-71, Sum P(2) = 1.4e-71
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 146 RSSQSFDHESPSSLDTRS----ANSQS-QERQKDGKKASTKRKRGDSSISHEPQNEN 197
RSS + + S D+ S +NS+S + + K K + K+K + + +E +++
Sbjct: 320 RSSSGEEDDGESDFDSFSVSDGSNSRSSRSKNKKAKSSKKKKKMDEDADGYETDHQD 376
Score = 48 (22.0 bits), Expect = 3.4e-70, Sum P(3) = 3.4e-70
Identities = 25/119 (21%), Positives = 41/119 (34%)
Query: 85 IGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGT 144
+GD Q + + + + K +K E+ SK + V+ A G
Sbjct: 14 MGDDIEEQISETDTPKSKKKKKAKKS-RESRTSKRQKVIREEIAVSSPEVMEAIRMAEGE 72
Query: 145 HRSSQSFDHESPSSLDTRSANSQSQERQ-KDGKKASTKRKRGDSSISHEPQNENPQQLD 202
+ ES S S + + KD KK S K G S + + P++ D
Sbjct: 73 EEEDRVMRSESEGSDYAPSKKKKKRSSSSKDRKKGSAGEKAGGSGGKSKRKEPEPEEED 131
Score = 45 (20.9 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 176 KKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
+KA TK +G ++ PQ S+ V P K K+
Sbjct: 274 RKAKTKEGKGPNARRKTKPTPKPQDKKSKAKKVAPLKIKL 313
Score = 42 (19.8 bits), Expect = 6.0e-71, Sum P(2) = 6.0e-71
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 991 RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050
+ + ++ R +K K + + ++ EA MA E E ++ S Y P+ +
Sbjct: 34 KKAKKSRESRTSKRQKVIREEIAVSSPEVMEAIRMAEGEEEEDRVMRSESEGSDYAPSKK 93
Query: 1051 NEDESDQAK 1059
+ S +K
Sbjct: 94 KKKRSSSSK 102
Score = 41 (19.5 bits), Expect = 7.6e-71, Sum P(2) = 7.6e-71
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 984 NDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVE 1043
+D+E + KS + K K E K ++E +++S M+ + E
Sbjct: 16 DDIEEQISETDTPKSKKKKKAKKSRESRTSKRQKVIREEIAVSS--PEVMEAIRMAEGEE 73
Query: 1044 KYEPAVENEDE-SDQA 1058
+ + + +E E SD A
Sbjct: 74 EEDRVMRSESEGSDYA 89
Score = 38 (18.4 bits), Expect = 3.4e-70, Sum P(3) = 3.4e-70
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 206 SVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGG 241
S NP +G + A +V A +S V +GG
Sbjct: 206 STNNPMRGSASANAALAAANVAAAVESMVTKVDAGG 241
Score = 37 (18.1 bits), Expect = 2.0e-70, Sum P(2) = 2.0e-70
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 772 VRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEK 804
V I + ++EED+ + ++S + Y S+K
Sbjct: 62 VMEAIRMAEGEEEEDRVMRSESEGSD-YAPSKK 93
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 758 (271.9 bits), Expect = 1.0e-71, Sum P(3) = 1.0e-71
Identities = 193/570 (33%), Positives = 298/570 (52%)
Query: 1009 EKYLQKLGSKLQEAKSMASHF---------ENEMDETQTVSVVEKYEPAVE--NEDES-- 1055
EK L K +K ++K M + + E E + + + E+ + A++ N ++
Sbjct: 809 EKILAKKETKAGKSKKMTTFYLCKWKTLPHEKSTWEDENILITEEDQAAIKQFNANQLLL 868
Query: 1056 DQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILA 1115
DQ K Y+ K + + + + + L+E+Q+ G WL + + + +LA
Sbjct: 869 DQPKKYVNRPTKLPIFNNELVPKFQDNLS------LKEFQVEGFLWLSYCWYHCRSSLLA 922
Query: 1116 DEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPP 1175
DEMGLGKT+Q IA + YL ++ +GPF W EI W ++ +V+ G
Sbjct: 923 DEMGLGKTIQSIAFLQYLSQSVGIKGPFLVVAPLSTLGNWHKEILKWT-KMKTLVFYGSQ 981
Query: 1176 EERRRLFKEKIVHQK---FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232
E R + K + H+ F VLLTTYE +M+ H ++ W +I+DEGHRIKN K
Sbjct: 982 ETRGFISKYEFKHKDTYLFEVLLTTYETIMSDHS--SFVRVPWRALILDEGHRIKNDKSK 1039
Query: 1233 LNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDN 1292
+ + LK ++ H ++LTGTP FNS ++F ++ E +
Sbjct: 1040 VLSKLKSIKTEHSIILTGTPLQNDMKELWTMLNFLDPDKFNSCQEFLDEYSDLKEESQ-- 1097
Query: 1293 SPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK 1352
+++LHQ+L P++LRR+K VE +P K E +++ E S+ QK +
Sbjct: 1098 ---------------VSKLHQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYR 1142
Query: 1353 RV-EENLGSIGNS-KGRS----VHNSVMELRNICNHPYLSQLHAEEV---DTLIPKHYLP 1403
+ E N + K ++ + N ++++R +CNHP+L E + + + L
Sbjct: 1143 AILERNREFLSRGIKQKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELG 1202
Query: 1404 PI-VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSG 1462
+ V+ KL ++D+LL +LKA H+VL FS M L+++EDYL +++Y Y RLDG
Sbjct: 1203 ELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKS 1262
Query: 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 1522
R A ID+F + + F+FLLS RAGGVG+NL ADTVI+FD+DWNPQ DLQAQAR HR
Sbjct: 1263 EVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHR 1322
Query: 1523 IGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
IGQ +V V R T T EE + A KL
Sbjct: 1323 IGQTNNVKVYRLITRNTYEEYLFECATKKL 1352
Score = 71 (30.1 bits), Expect = 1.0e-71, Sum P(3) = 1.0e-71
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 752 TSQDDPKFS-DGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQ 810
T +DD K D S T V N + + + + T +PP P T +++ +
Sbjct: 691 TVKDDDKMKVDESSTTKTATEVSNEATEVSNEATSAAAATTTTPPQPPITEEIRFLA-LF 749
Query: 811 KRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKS 854
K K W+ ++ K++ S KL ++V ++ + K +S
Sbjct: 750 KNKSYRSVRWVTEKVIEKEKESPTLIKLLKTVRNTPPPAIKNES 793
Score = 54 (24.1 bits), Expect = 1.0e-71, Sum P(3) = 1.0e-71
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 106 DSKAGLAENEMSKIE-PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSA 164
+S++ ++ + E P T+S+ V G AS T + D +S S++ + S+
Sbjct: 388 ESESEESDESSDEYETPITTSKSKVPIKKGGSKKAAASPT---TTKLD-KSKSNISSSSS 443
Query: 165 NSQSQERQKD-GKKASTKRKRGDSSI---SHEPQNENPQQLDSRN 205
+S S ++K G S +G I S E ++++ D +N
Sbjct: 444 SSNSNNKKKQLGVTKSRVPLKGKGKIKNSSSEDEDDDDDDSDEQN 488
Score = 52 (23.4 bits), Expect = 1.1e-70, Sum P(4) = 1.1e-70
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 265 NVTEKPL---DSANVSNSVPRASNSK-FPEEVEVSASGQQQGNSLSSANGVLASRGTWNQ 320
+ T KP DS +SNS+ S SK P+ ++S N+ + AN S N
Sbjct: 56 STTTKPKSQSDSPPLSNSLMTRSRSKQSPQISSANSSNNNNNNTTTPANNNGKSNKNNNN 115
Query: 321 NRA 323
N A
Sbjct: 116 NIA 118
Score = 50 (22.7 bits), Expect = 2.7e-71, Sum P(3) = 2.7e-71
Identities = 23/113 (20%), Positives = 43/113 (38%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKR--GDSSISHEPQNENPQQLDSRNSVVNPR 211
+ P + ++S S +GK+ T + +S S E +E + + S V +
Sbjct: 356 KKPPASKSKSQPSPPTSNSLNGKRRRTPLNKIESESEESDESSDEYETPITTSKSKVPIK 415
Query: 212 KGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQ 264
KG K A + +SN + S + G S + +K +G+
Sbjct: 416 KGGSKKAAASPTTTKLDKSKSNISSSSSSSNSNNKKKQLGVTKSRVPLKGKGK 468
Score = 50 (22.7 bits), Expect = 1.8e-70, Sum P(4) = 1.8e-70
Identities = 38/209 (18%), Positives = 86/209 (41%)
Query: 266 VTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGF 325
V++K A N++ + ++ EE+ +++ N+ ++ N ++ T +
Sbjct: 3 VSKKSKTIAKKDNNM-KDDDTIMNEELNNNSNSNNNNNNNNNNNKNTSTNST-TASTTTK 60
Query: 326 PFERSQVPRFPGNMMIETPMQQ-PTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSP 384
P +S P ++M + +Q P +SS AN+ + ++ P G S +
Sbjct: 61 PKSQSDSPPLSNSLMTRSRSKQSPQISS--ANSSNNNNNN-----TTTPANNNGKSNKN- 112
Query: 385 VESQLFSTNRGDET---SAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTM 441
+ +T++ T S ++++ ++ ++N ++ N + G+ + L +
Sbjct: 113 -NNNNIATSKRPPTRSKSGIINNSSSNNNNNNNNNNNNNNEEEEEGKTEELQDEYTLESS 171
Query: 442 ASRDTGKSS------VSQTPVFSGMPFKE 464
DT K S + Q PV P K+
Sbjct: 172 DDDDTSKKSNNDEKPLPQPPVNKNKPNKK 200
Score = 48 (22.0 bits), Expect = 4.4e-71, Sum P(3) = 4.4e-71
Identities = 39/143 (27%), Positives = 55/143 (38%)
Query: 149 QSFDHESPSSLDTRSANSQSQERQKDGK---KA--STKRKRGDSSISHEPQNENPQQLDS 203
QSF SS D + N+ ++ + KA ST R RG ++ P P S
Sbjct: 247 QSF---GDSSADEKKPNNSVAKKAPNNTMTIKATRSTSRTRGGTTAQSTPPPPPP----S 299
Query: 204 RNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEG 263
R R GK K A +++ E S + E + S + SS V+Q
Sbjct: 300 RT-----RGGK--KA-AHIKNNIESEESSEEEEEEEEEEDEEVQASSSSSSSRRGVRQIN 351
Query: 264 QNVTEKPLDSANVSNSVPRASNS 286
+KP S + S P SNS
Sbjct: 352 ATTAKKPPASKSKSQPSPPTSNS 374
Score = 48 (22.0 bits), Expect = 4.3e-69, Sum P(3) = 4.3e-69
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 993 VQDAKSDRVNKLLKETEKYL-QKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
++ + D +K EK L Q +K + K + + E E +E + E+ E E
Sbjct: 168 LESSDDDDTSKKSNNDEKPLPQPPVNKNKPNKKLKNDNEGENEEDEE----EEEEEEEEE 223
Query: 1052 EDESDQAKHYLES 1064
E+E ++ Y+E+
Sbjct: 224 EEEEEEEDIYIEN 236
Score = 48 (22.0 bits), Expect = 1.1e-68, Sum P(3) = 1.1e-68
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 685 TVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKD 744
T+ +E + +N S ++ + N + N+ +S + KP S +DS P+ +
Sbjct: 22 TIMNEELNNNS----NSNNNNNNNNNNNKNTSTNSTTASTTTKPKSQSDSP-----PLSN 72
Query: 745 ASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKS 788
S M R S+ P+ S + +S N + TT + KS
Sbjct: 73 -SLMTRSRSKQSPQISSAN------SSNNNNNNTTTPANNNGKS 109
Score = 46 (21.3 bits), Expect = 4.6e-70, Sum P(4) = 4.6e-70
Identities = 34/154 (22%), Positives = 54/154 (35%)
Query: 144 THRSSQSFDHESPSSLDTRSANSQSQE----RQKDGKKASTKRKRGDSSISHEPQNENPQ 199
T SQS +SL TRS + QS + + +T ++ S++ N N
Sbjct: 59 TKPKSQSDSPPLSNSLMTRSRSKQSPQISSANSSNNNNNNTTTPANNNGKSNKNNNNNIA 118
Query: 200 QLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRV 259
S+ + G +N + + +N N G+ E SS
Sbjct: 119 T--SKRPPTRSKSGIINNSSSNNNNNNNNNNNNN-NEEEEEGKTEELQDEYTLESSDDDD 175
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVE 293
+ N EKPL V+ + P N K + E
Sbjct: 176 TSKKSNNDEKPLPQPPVNKNKP---NKKLKNDNE 206
Score = 43 (20.2 bits), Expect = 1.1e-70, Sum P(4) = 1.1e-70
Identities = 26/119 (21%), Positives = 39/119 (32%)
Query: 508 GSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEV 567
G R+ T K ++ S P G R T P E+D SS E
Sbjct: 346 GVRQINATTAKKPPASKSKSQPSPPTSNSLNGKRRRT----PLNKIESESEESDESSDEY 401
Query: 568 ENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTR 626
E KS P + T KL+ + ++ S + + +QL +R
Sbjct: 402 ETPITTSKSKVPIKKGGSKKAAASPTTTKLDKSKSNISSSSSSSNSNNKKKQLGVTKSR 460
Score = 43 (20.2 bits), Expect = 9.5e-70, Sum P(4) = 9.5e-70
Identities = 14/79 (17%), Positives = 33/79 (41%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQ 199
Q S + S+ + ++ + + + +N + K+ T+ K G + S N N
Sbjct: 85 QISSANSSNNNNNNTTTPANNNGKSNKNNNNNIATSKRPPTRSKSGIINNSSSNNNNNNN 144
Query: 200 QLDSRNSVVNPRKGKMNKV 218
++ N+ +GK ++
Sbjct: 145 NNNNNNNE-EEEEGKTEEL 162
Score = 42 (19.8 bits), Expect = 1.8e-68, Sum P(3) = 1.8e-68
Identities = 17/93 (18%), Positives = 41/93 (44%)
Query: 696 PTQFKS-FGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQ 754
PT+ KS ++ +S N + N++ ++ + ++ + + D Y+L D + +
Sbjct: 124 PTRSKSGIINNSSSNNNNNNNNNNNNNNEEEEEGKTEELQDEYTLESSDDDDTSKKSNND 183
Query: 755 DDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDK 787
+ P + ++N E+DEE++
Sbjct: 184 EKPLPQPPVNKNKPNKKLKNDNEGENEEDEEEE 216
Score = 41 (19.5 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 24/150 (16%), Positives = 60/150 (40%)
Query: 657 NKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSH 716
N N+ NS T S P+ +P + + L+ + Q + +S N + N+
Sbjct: 43 NNNKNTSTNSTTA--STTTKPKSQSDSPPLSNSLMTRSRSKQSPQISSANSSNNNNNNTT 100
Query: 717 LSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNS----- 771
+ + K + + P + SG++ ++S ++ ++ + +
Sbjct: 101 TPANNNGKSNKN-NNNNIATSKRPPTRSKSGIINNSSSNNNNNNNNNNNNNNEEEEEGKT 159
Query: 772 --VRNGISL-TTEQDEEDKSLHTDSPPAPK 798
+++ +L +++ D+ K + D P P+
Sbjct: 160 EELQDEYTLESSDDDDTSKKSNNDEKPLPQ 189
Score = 40 (19.1 bits), Expect = 2.0e-69, Sum P(4) = 2.0e-69
Identities = 20/95 (21%), Positives = 33/95 (34%)
Query: 184 RGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQM 243
+ D +I +E N N ++ N+ N K + K QS+ + +
Sbjct: 18 KDDDTIMNEELNNNSNSNNNNNNNNNNNKNTSTN-STTASTTTKPKSQSDSPPLSNSLMT 76
Query: 244 EHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSN 278
S S +SS N T P ++ SN
Sbjct: 77 RSRSKQSPQISSANSSNNNNNNTTT-PANNNGKSN 110
Score = 38 (18.4 bits), Expect = 2.6e-68, Sum P(2) = 2.6e-68
Identities = 17/85 (20%), Positives = 33/85 (38%)
Query: 47 HSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKD 106
+S + I + T+ Q+G E + + T+ + D + SS+
Sbjct: 657 NSKTKETIIKTETTIKEQDG-PKETVAVATTKTTT--TVKDDDKMKVDESSTTKTATEVS 713
Query: 107 SKAGLAENEMSKIEPFTSSRPPVAP 131
++A NE + T++ PP P
Sbjct: 714 NEATEVSNEATSAAAATTTTPPQPP 738
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 463 (168.0 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 111/312 (35%), Positives = 159/312 (50%)
Query: 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXX 1148
G LREYQ GL WL +L+++ NGILADEMGLGKT+Q IAL+ +L K + GP
Sbjct: 445 GTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVP 504
Query: 1149 XXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP 1208
WE E + P + Y G P+ER+ ++V +T+Y+ ++ H +P
Sbjct: 505 TSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDH-QP 563
Query: 1209 KLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXX------ 1262
K +W Y+I+DE H IKN + L ++ + HRLLLTGTP
Sbjct: 564 FRRK-KWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLM 622
Query: 1263 -XXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLR 1321
F + +DF WF+KP + + D + +LH+VLRP++LR
Sbjct: 623 PAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNT----VAKLHRVLRPYLLR 678
Query: 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMK------RVEENLGSIGNSKGRSVHNSVME 1375
RLK +VE ++P K E +V C+ S Q+ L R E L S GN S+ N +M+
Sbjct: 679 RLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILAS-GNFM--SIINCLMQ 735
Query: 1376 LRNICNHPYLSQ 1387
LR +CNHP L +
Sbjct: 736 LRKVCNHPNLHE 747
Score = 373 (136.4 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 76/156 (48%), Positives = 101/156 (64%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL++LDRLL L + HRVL F+ MT++LD++E +L +RYLRLDG T R L
Sbjct: 990 CGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQIL 1049
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
++FN D +F+LS R+GG+G+NL ADTVI +D+DWNPQ+D QAQ R+HRIGQ RD
Sbjct: 1050 TERFNNDDK-IPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD 1108
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
V + R + TVE + A K + I G F
Sbjct: 1109 VHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEF 1144
Score = 56 (24.8 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 788 SLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+LH + P + + I D++ + LLV + + ++ TK +ST
Sbjct: 744 NLHEERPIVTSFALRRSAIADLEIKDLLVRKRLLHEEPMTKLDLST 789
Score = 56 (24.8 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 25/121 (20%), Positives = 52/121 (42%)
Query: 933 HKER-LDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLR 991
H+ER + F ++R + +K+ RK +H E + ++ + L++ D E +
Sbjct: 746 HEERPIVTSFALRRSAIADLE--IKDLLVRKRLLHEEPMTKLDLSTLRLIR-TDSEAFDT 802
Query: 992 MVQD-----AKSDRVNKLLKETEKYLQKLGSKLQEAKS-MASHFENEMDETQTVSV-VEK 1044
V D ++ N++ + + Q KS HF+N++ + Q + +K
Sbjct: 803 FVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKEHFQNKIYQEQLDKLNFQK 862
Query: 1045 Y 1045
Y
Sbjct: 863 Y 863
Score = 39 (18.8 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 505 NVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARE 543
+V+G R + + KV++S + + A + RL A E
Sbjct: 124 HVNGYARSMHNDRKVRASRSRRISGMILAHFKRLSGADE 162
Score = 38 (18.4 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1322 RLKHKVENELPEK----IERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHN 1371
+L+H++ NE +K E V + + + +NL S N RS+HN
Sbjct: 82 QLRHRI-NEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHN 134
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 765 (274.4 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 191/527 (36%), Positives = 273/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQ+ GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 699 QPDYLDTTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 758
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F+ +
Sbjct: 759 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKP 818
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +++DE HR+KN K L +Y
Sbjct: 819 SKMKKEASVKFHVLLTSYELITI--DTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNY 876
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 877 PLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEF-------ADIAKEDQ--- 926
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 927 -------IKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFE 979
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL A E + Y + + GKL +L
Sbjct: 980 ALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLL 1039
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L KLK HRVL FS MT++LD++ED+L + Y+Y R+DG +GG R ID+FN
Sbjct: 1040 QKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAP 1099
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+P F+FLLS RAGG+G+NL ADTV+I+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1100 GAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1159
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1160 TKASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1204
Score = 52 (23.4 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
E+P+S + +S +KA TK +G ++ PQ+ + V P K
Sbjct: 225 ETPTSASAAQISPESTPAAPV-RKAKTKEGKGPNARKKSKPAPKPQEKKVKTKKVAPLKI 283
Query: 214 KMNKVDAPGGFSVKGAEQSN 233
K+ GGF+ K S+
Sbjct: 284 KL------GGFNSKRKRSSS 297
Score = 52 (23.4 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 31/128 (24%), Positives = 49/128 (38%)
Query: 933 HKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHRE----KIDRIQREKINLLKINDVEG 988
H+ + E ++ E VK+ K+ ++ RE K +R +RE+I + EG
Sbjct: 13 HRSVMQEEDDLEEELSENDAPKVKK-KKKAKKSSRESKGSKRNRSRREEIGISSPEPGEG 71
Query: 989 YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPA 1048
+ D + DR E Y G K ++ S A + + S K
Sbjct: 72 --PDLDDGEEDRSES---EGSDYTP--GRKKKKRASTAKDKKRNSSAAERNSAASKRREP 124
Query: 1049 VENEDESD 1056
E EDE D
Sbjct: 125 EEEEDEDD 132
Score = 50 (22.7 bits), Expect = 9.1e-70, Sum P(3) = 9.1e-70
Identities = 30/125 (24%), Positives = 46/125 (36%)
Query: 88 SSTAQCAGSSSQVAGVVK-DSKAGLAENEMSKIEPFTSSRPP------VAPSGAGHDYYQ 140
+S AQ + S+ A V K +K G N K +P + VAP +
Sbjct: 230 ASAAQISPESTPAAPVRKAKTKEGKGPNARKKSKPAPKPQEKKVKTKKVAPLKIKLGGFN 289
Query: 141 ASGTHRSSQSFDHESPSSLDTRSANSQS--------QERQKDGKKASTKRKRGDSSISHE 192
+ SS+ D + S D S NS S R KK K K+ + +E
Sbjct: 290 SKRKRSSSEEDDVDVDSDFDDGSINSVSVSNGSNSRSSRSSAKKKPKKKTKKDEDGDGYE 349
Query: 193 PQNEN 197
+++
Sbjct: 350 TDHQD 354
Score = 41 (19.5 bits), Expect = 4.2e-70, Sum P(2) = 4.2e-70
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 QKTKQRMSTCFNKLKESVSSSEDISAKTK 853
+K K+R ST +K + S S++E SA +K
Sbjct: 93 RKKKKRASTAKDKKRNS-SAAERNSAASK 120
Score = 41 (19.5 bits), Expect = 8.0e-69, Sum P(3) = 8.0e-69
Identities = 22/106 (20%), Positives = 41/106 (38%)
Query: 105 KDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSA 164
++SK G N + E SS P G G D S+ D+ R++
Sbjct: 46 RESK-GSKRNRSRREEIGISSPEP----GEGPDLDDGEEDRSESEGSDYTPGRKKKKRAS 100
Query: 165 NSQSQERQKDGKK---ASTKRKRGDSSISHEPQNENP----QQLDS 203
++ ++R + A++KR+ + + + P Q LD+
Sbjct: 101 TAKDKKRNSSAAERNSAASKRREPEEEEDEDDDDSEPKSSSQLLDT 146
Score = 39 (18.8 bits), Expect = 9.1e-70, Sum P(3) = 9.1e-70
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 212 KGKMNKVDAP 221
KGKM K+D P
Sbjct: 675 KGKMRKLDRP 684
Score = 38 (18.4 bits), Expect = 8.7e-70, Sum P(2) = 8.7e-70
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 773 RNGI-SLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
RN S E +EE+ DS P + + W M+
Sbjct: 114 RNSAASKRREPEEEEDEDDDDSEPKSSSQLLDTWGME 150
Score = 37 (18.1 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 16/89 (17%), Positives = 29/89 (32%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGK 214
+P + NS+ + + D SI+ + SR+S K K
Sbjct: 279 APLKIKLGGFNSKRKRSSSEEDDVDVDSDFDDGSINSVSVSNGSNSRSSRSSAKKKPKKK 338
Query: 215 MNKVDAPGGFSVKGAEQSNFNMVPSGGQM 243
K + G+ Q + GG++
Sbjct: 339 TKKDEDGDGYETD--HQDYCEVCQQGGEI 365
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 740 (265.6 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 181/486 (37%), Positives = 262/486 (53%)
Query: 1078 SVSEQPTCL---QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + +G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 459 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 518
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WA +++ +VY G R + + +H + L
Sbjct: 519 HEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 578
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 579 KFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 637
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 638 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 679
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 739
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + + + + L ++R GKL +LD+LL +L+
Sbjct: 740 SGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 798
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 799 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 858
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T +VEE +
Sbjct: 859 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILE 918
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 919 RAKKKM 924
Score = 82 (33.9 bits), Expect = 6.9e-71, Sum P(3) = 6.9e-71
Identities = 36/142 (25%), Positives = 58/142 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNSSGESSQSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+G +E D ++ PP K +E W L V+++ +LK+Q+ +Q ++
Sbjct: 58 SGSQSESESDNSRENKVQAKPP--KVDGAEFW--KSSPSILAVQRSAMLKKQQQQQHQAS 113
Query: 834 CFNKLKESVSSSEDISAKTKSV 855
+ +E SSSED + V
Sbjct: 114 SNSGSEEDSSSSEDSDDSSSEV 135
Score = 76 (31.8 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 130 APSGAGHDYYQASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
+PS +G D S R S D ES +S Q++ + K+GKK ++KR S
Sbjct: 152 SPSQSGSD--SESEEEREKSSCDETESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQIDS 209
Query: 189 ISHEPQNE---NPQQLDSRNSVVN 209
E ++E N ++ R + VN
Sbjct: 210 SEEEEEDEDYDNDKRSSRRQATVN 233
Score = 70 (29.7 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 40/142 (28%), Positives = 57/142 (40%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNSSGESSQSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSE 63
Query: 119 IEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT-RSANSQSQERQKDGKK 177
E S V QA F SPS L RSA + Q++Q+ +
Sbjct: 64 SESDNSRENKV----------QAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQH-QA 112
Query: 178 ASTKRKRGDSSISHEPQNENPQ 199
+S DSS S + + + +
Sbjct: 113 SSNSGSEEDSSSSEDSDDSSSE 134
Score = 68 (29.0 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 48/207 (23%), Positives = 88/207 (42%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ + + SSQS D +S S+ + S +S DG + + DS
Sbjct: 3 GHSDEESVRNSSGESSQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF----SVKGAEQSNFNMVPSGGQMEHFSS 248
Q+E+ +S NS N + K KVD + S+ ++S M+ Q +H
Sbjct: 60 SQSES----ESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSA--MLKKQQQQQH--Q 111
Query: 249 LSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
S N S +E + +E DS + S+ V R + E+ ++S SG + S
Sbjct: 112 ASSNSGS-----EEDSSSSE---DSDDSSSEVKRKKHKD--EDWQMSGSGSPSQSGSDSE 161
Query: 309 NGVLASRGTWNQNRAGF-PFERSQVPR 334
+ + + ++ + + P +S+ P+
Sbjct: 162 SEEEREKSSCDETESDYEPKNKSRKPQ 188
Score = 58 (25.5 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK-EVENLK--MMDKS 576
QS +D SA G + G++ + G S S E+ S S+ E +N + +
Sbjct: 19 QSDDDSGSASG-SGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAK 77
Query: 577 GPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESAS 624
P D + + + + A ++ Q+ + QA S S++ S+S
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSS 125
Score = 53 (23.7 bits), Expect = 8.8e-69, Sum P(2) = 8.8e-69
Identities = 38/173 (21%), Positives = 65/173 (37%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
SG SG+ S S S SS D S+ S S + + S D+S +
Sbjct: 14 SGESSQSDDDSGSASGSGS-GSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSREN 72
Query: 192 EPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
+ Q + P ++D K + + +K +Q + G E SS
Sbjct: 73 KVQAK-PPKVDGAEFW----KSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSED 127
Query: 252 NMSSILRVKQEGQNVTEKPLD-SANVSNSVPRASNSKFPEEVEVSASGQQQGN 303
+ S VK++ + + S + S S S+S+ EE E S+ + + +
Sbjct: 128 SDDSSSEVKRKKHKDEDWQMSGSGSPSQS---GSDSESEEEREKSSCDETESD 177
Score = 52 (23.4 bits), Expect = 9.6e-68, Sum P(3) = 9.6e-68
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQT 454
DE S SSG+ + D S + S + G +S G++ + D+G S SQ+
Sbjct: 6 DEESVRNSSGESSQSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSDSGSESGSQS 62
Score = 46 (21.3 bits), Expect = 4.8e-68, Sum P(2) = 4.8e-68
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 397 ETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPV 456
+ SAML + +H SSN+ S+ + + +S + + R + + S S +P
Sbjct: 97 QRSAMLKKQQQQQHQASSNSGSEEDSSSSEDSDDS--SSEVKRKKHKDEDWQMSGSGSPS 154
Query: 457 FSGMPFKEQQLKQLRAQC 474
SG + ++ ++ ++ C
Sbjct: 155 QSGSDSESEEERE-KSSC 171
Score = 42 (19.8 bits), Expect = 6.9e-71, Sum P(3) = 6.9e-71
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
D+ S+ K K+ + + GS Q S E E +++ YEP ++
Sbjct: 130 DSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES--EEEREKSSCDETESDYEPKNKSRKP 187
Query: 1055 SDQAK 1059
+++K
Sbjct: 188 QNRSK 192
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 740 (265.6 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 181/486 (37%), Positives = 262/486 (53%)
Query: 1078 SVSEQPTCL---QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + +G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 459 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 518
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WA +++ +VY G R + + +H + L
Sbjct: 519 HEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 578
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 579 KFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 637
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 638 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 679
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 739
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + + + + L ++R GKL +LD+LL +L+
Sbjct: 740 SGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 798
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 799 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 858
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T +VEE +
Sbjct: 859 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILE 918
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 919 RAKKKM 924
Score = 82 (33.9 bits), Expect = 7.0e-71, Sum P(3) = 7.0e-71
Identities = 36/142 (25%), Positives = 58/142 (40%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS D+
Sbjct: 2 NGHSDEESVRNSSGESSQSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+G +E D ++ PP K +E W L V+++ +LK+Q+ +Q ++
Sbjct: 58 SGSQSESESDNSRENKVQAKPP--KVDGAEFW--KSSPSILAVQRSAMLKKQQQQQHQAS 113
Query: 834 CFNKLKESVSSSEDISAKTKSV 855
+ +E SSSED + V
Sbjct: 114 SNSGSEEDSSSSEDSDDSSSEV 135
Score = 76 (31.8 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 130 APSGAGHDYYQASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
+PS +G D S R S D ES +S Q++ + K+GKK ++KR S
Sbjct: 152 SPSQSGSD--SESEEEREKSSCDETESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQIDS 209
Query: 189 ISHEPQNE---NPQQLDSRNSVVN 209
E ++E N ++ R + VN
Sbjct: 210 SEEEEEDEDYDNDKRSSRRQATVN 233
Score = 70 (29.7 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 40/142 (28%), Positives = 57/142 (40%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G ++ S SGS G SS + GSSSQ DS +G S+
Sbjct: 8 ESVRNSSGESSQSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSE 63
Query: 119 IEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT-RSANSQSQERQKDGKK 177
E S V QA F SPS L RSA + Q++Q+ +
Sbjct: 64 SESDNSRENKV----------QAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQH-QA 112
Query: 178 ASTKRKRGDSSISHEPQNENPQ 199
+S DSS S + + + +
Sbjct: 113 SSNSGSEEDSSSSEDSDDSSSE 134
Score = 68 (29.0 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 48/207 (23%), Positives = 88/207 (42%)
Query: 135 GHDYYQA--SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
GH ++ + + SSQS D +S S+ + S +S DG + + DS
Sbjct: 3 GHSDEESVRNSSGESSQS-DDDSGSASGSGSGSSSGSS--SDGSSSQSGSSDSDSGSESG 59
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGF----SVKGAEQSNFNMVPSGGQMEHFSS 248
Q+E+ +S NS N + K KVD + S+ ++S M+ Q +H
Sbjct: 60 SQSES----ESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSA--MLKKQQQQQH--Q 111
Query: 249 LSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
S N S +E + +E DS + S+ V R + E+ ++S SG + S
Sbjct: 112 ASSNSGS-----EEDSSSSE---DSDDSSSEVKRKKHKD--EDWQMSGSGSPSQSGSDSE 161
Query: 309 NGVLASRGTWNQNRAGF-PFERSQVPR 334
+ + + ++ + + P +S+ P+
Sbjct: 162 SEEEREKSSCDETESDYEPKNKSRKPQ 188
Score = 58 (25.5 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK-EVENLK--MMDKS 576
QS +D SA G + G++ + G S S E+ S S+ E +N + +
Sbjct: 19 QSDDDSGSASG-SGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAK 77
Query: 577 GPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESAS 624
P D + + + + A ++ Q+ + QA S S++ S+S
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSS 125
Score = 53 (23.7 bits), Expect = 8.9e-69, Sum P(2) = 8.9e-69
Identities = 38/173 (21%), Positives = 65/173 (37%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
SG SG+ S S S SS D S+ S S + + S D+S +
Sbjct: 14 SGESSQSDDDSGSASGSGS-GSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSREN 72
Query: 192 EPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSG 251
+ Q + P ++D K + + +K +Q + G E SS
Sbjct: 73 KVQAK-PPKVDGAEFW----KSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSED 127
Query: 252 NMSSILRVKQEGQNVTEKPLD-SANVSNSVPRASNSKFPEEVEVSASGQQQGN 303
+ S VK++ + + S + S S S+S+ EE E S+ + + +
Sbjct: 128 SDDSSSEVKRKKHKDEDWQMSGSGSPSQS---GSDSESEEEREKSSCDETESD 177
Score = 52 (23.4 bits), Expect = 9.8e-68, Sum P(3) = 9.8e-68
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQT 454
DE S SSG+ + D S + S + G +S G++ + D+G S SQ+
Sbjct: 6 DEESVRNSSGESSQSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSDSGSESGSQS 62
Score = 46 (21.3 bits), Expect = 4.9e-68, Sum P(2) = 4.9e-68
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 397 ETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPV 456
+ SAML + +H SSN+ S+ + + +S + + R + + S S +P
Sbjct: 97 QRSAMLKKQQQQQHQASSNSGSEEDSSSSEDSDDS--SSEVKRKKHKDEDWQMSGSGSPS 154
Query: 457 FSGMPFKEQQLKQLRAQC 474
SG + ++ ++ ++ C
Sbjct: 155 QSGSDSESEEERE-KSSC 171
Score = 42 (19.8 bits), Expect = 7.0e-71, Sum P(3) = 7.0e-71
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
D+ S+ K K+ + + GS Q S E E +++ YEP ++
Sbjct: 130 DSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES--EEEREKSSCDETESDYEPKNKSRKP 187
Query: 1055 SDQAK 1059
+++K
Sbjct: 188 QNRSK 192
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 740 (265.6 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 181/486 (37%), Positives = 262/486 (53%)
Query: 1078 SVSEQPTCL---QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + +G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 460 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 519
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVL 1194
GPF W+ EI WA +++ +VY G R + + +H + L
Sbjct: 520 HEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 579
Query: 1195 ----LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
L T ++ K D+ L + W +I +DE HR+KN L L ++S+HRLL+TG
Sbjct: 580 KFNILLTTYEILLK-DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 638
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP F E FS W + FE +
Sbjct: 639 TPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREYGYAS---------- 680
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGRS 1368
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG +
Sbjct: 681 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGST 740
Query: 1369 VH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 1426
N +MEL+ CNH YL + + + + L ++R GKL +LD+LL +L+
Sbjct: 741 SGFLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERG 799
Query: 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS
Sbjct: 800 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 859
Query: 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546
RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T +VEE +
Sbjct: 860 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILE 919
Query: 1547 SAEHKL 1552
A+ K+
Sbjct: 920 RAKKKM 925
Score = 76 (31.8 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 130 APSGAGHDYYQASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
+PS +G D S R S D ES +S Q++ + K+GKK ++KR S
Sbjct: 153 SPSQSGSD--SESEEEREKSSCDETESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQIDS 210
Query: 189 ISHEPQNE---NPQQLDSRNSVVN 209
E ++E N ++ R + VN
Sbjct: 211 SEEEEEDEDYDNDKRSSRRQATVN 234
Score = 71 (30.1 bits), Expect = 1.0e-69, Sum P(3) = 1.0e-69
Identities = 33/129 (25%), Positives = 53/129 (41%)
Query: 727 KPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEED 786
K S +D D S SG +S D GS D+ +G +E D
Sbjct: 16 KDCSQSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--DSGSESGSQSESESDNSR 71
Query: 787 KSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSE 846
++ PP K +E W L V+++ +LK+Q+ +Q ++ + +E SSSE
Sbjct: 72 ENKVQAKPP--KVDGAEFW--KSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 127
Query: 847 DISAKTKSV 855
D + V
Sbjct: 128 DSDDSSSEV 136
Score = 67 (28.6 bits), Expect = 2.6e-69, Sum P(3) = 2.6e-69
Identities = 35/120 (29%), Positives = 48/120 (40%)
Query: 81 SGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQ 140
SGS G SS + GSSSQ DS +G S+ E S V Q
Sbjct: 29 SGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSESESDNSRENKV----------Q 76
Query: 141 ASGTHRSSQSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQ 199
A F SPS L RSA + Q++Q+ + +S DSS S + + + +
Sbjct: 77 AKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQH-QASSNSGSEEDSSSSEDSDDSSSE 135
Score = 58 (25.5 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 520 QSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSK-EVENLK--MMDKS 576
QS +D SA G + G++ + G S S E+ S S+ E +N + +
Sbjct: 20 QSDDDSGSASG-SGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAK 78
Query: 577 GPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESAS 624
P D + + + + A ++ Q+ + QA S S++ S+S
Sbjct: 79 PPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSS 126
Score = 53 (23.7 bits), Expect = 8.9e-69, Sum P(2) = 8.9e-69
Identities = 41/176 (23%), Positives = 69/176 (39%)
Query: 132 SGAGHDYYQA---SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
SG G D Q+ SG+ S S S SS D S+ S S + + S D+S
Sbjct: 13 SG-GKDCSQSDDDSGSASGSGS-GSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNS 70
Query: 189 ISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSS 248
++ Q + P ++D K + + +K +Q + G E SS
Sbjct: 71 RENKVQAK-PPKVDGAEFW----KSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSS 125
Query: 249 LSGNMSSILRVKQEGQNVTEKPLD-SANVSNSVPRASNSKFPEEVEVSASGQQQGN 303
+ S VK++ + + S + S S S+S+ EE E S+ + + +
Sbjct: 126 SEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQS---GSDSESEEEREKSSCDETESD 178
Score = 46 (21.3 bits), Expect = 4.9e-68, Sum P(2) = 4.9e-68
Identities = 34/197 (17%), Positives = 73/197 (37%)
Query: 110 GLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSS-LDTRSANSQS 168
G++EN +I SG+ S + SS +S SS D+ S +
Sbjct: 3 GISENYSGRISGGKDCSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQ 62
Query: 169 QERQKDGKKASTKRKRGDSSISHEPQNENPQQLD-SRNSVVNPRKGKMNKVDAPGGFSVK 227
E + D + + + + E +P L R++++ ++ + ++ + G
Sbjct: 63 SESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEED 122
Query: 228 GAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEG---QNVTEKPLDSANVSNSVPRAS 284
+ + + S + + MS Q G ++ E+ S + + S
Sbjct: 123 SSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPK 182
Query: 285 N-SKFPEEVEVSASGQQ 300
N S+ P+ S +G++
Sbjct: 183 NKSRKPQNRSKSKNGKK 199
Score = 46 (21.3 bits), Expect = 6.8e-67, Sum P(3) = 6.8e-67
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 397 ETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPV 456
+ SAML + +H SSN+ S+ + + +S + + R + + S S +P
Sbjct: 98 QRSAMLKKQQQQQHQASSNSGSEEDSSSSEDSDDS--SSEVKRKKHKDEDWQMSGSGSPS 155
Query: 457 FSGMPFKEQQLKQLRAQC 474
SG + ++ ++ ++ C
Sbjct: 156 QSGSDSESEEERE-KSSC 172
Score = 42 (19.8 bits), Expect = 1.0e-69, Sum P(3) = 1.0e-69
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 995 DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDE 1054
D+ S+ K K+ + + GS Q S E E +++ YEP ++
Sbjct: 131 DSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES--EEEREKSSCDETESDYEPKNKSRKP 188
Query: 1055 SDQAK 1059
+++K
Sbjct: 189 QNRSK 193
Score = 40 (19.1 bits), Expect = 6.8e-67, Sum P(3) = 6.8e-67
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 273 SANVSNSVPRASNSKFPEEVEVSASGQQQGNSL-SSANGVLASRGT 317
S N S + + ++ SASG G+S SS++G + G+
Sbjct: 5 SENYSGRISGGKDCSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGS 50
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 472 (171.2 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 118/305 (38%), Positives = 161/305 (52%)
Query: 1055 SDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGIL 1114
SD K E+ EK +S K + ++QP + GG+L++YQM GL WL++L+ N LNGIL
Sbjct: 142 SDSTKSTREAIEK---SQNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGIL 198
Query: 1115 ADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGP 1174
ADEMGLGKT+Q I+ + +L+E GPF W +EI +AP+I Y G
Sbjct: 199 ADEMGLGKTLQCISFLSHLIEN-GINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGT 257
Query: 1175 PEERRRLFKEKIVHQKF-NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233
+ER + + + Q+ N++LT+YE ++ D KL KI W Y+I+DEGHR+KN+ C L
Sbjct: 258 KQERNDI--DLLQQQETTNIILTSYE--ISIRDFNKLVKINWKYLIVDEGHRLKNSQCLL 313
Query: 1234 NADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN------KPFE 1287
LK S+RLLLTGTP IF+ E F QWFN E
Sbjct: 314 IKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGE 373
Query: 1288 SNGDNSPDXXXXXXXXXXXI----INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
G N+ + I I LH +L+PF+LRRLK V LP K E L+
Sbjct: 374 LEGTNNEEDEETKNLIKLNIQETLIKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPM 433
Query: 1344 SAYQK 1348
+ QK
Sbjct: 434 TKLQK 438
Score = 329 (120.9 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 84/244 (34%), Positives = 134/244 (54%)
Query: 1329 NELPEKIERLVRCE----ASAYQKLLMKRVEENLGSIGNSKGRSVHN-SVMELRNICNHP 1383
N P E LV+ + Q +L+ + +++ + +K + N +++LRNICN P
Sbjct: 535 NTTPSYDEALVKIRHIKSKTKIQSILIDAIYQDI--LKEAKHLKLQNLKMIQLRNICNSP 592
Query: 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443
++ + ++ + ++R K ++L++LLP L ++ H+VL F+ T++LD++E
Sbjct: 593 FIYYNYP-----ILDQ---AEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLE 644
Query: 1444 DYLT---FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 1500
D+L + RLDG T+ R I +FN F +FL S RAGG+G+NL AADT
Sbjct: 645 DWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK-FKVFLSSTRAGGLGINLVAADT 703
Query: 1501 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560
VI+ D DWNPQ+DLQA R HRIGQ V + RF ++EE + + + K + I
Sbjct: 704 VILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSKRFLERLVIQ 763
Query: 1561 AGFF 1564
G F
Sbjct: 764 MGQF 767
Score = 52 (23.4 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 18/90 (20%), Positives = 42/90 (46%)
Query: 991 RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050
++ +D K +R+NKL+++++ Y Q + + + +N + V K + +
Sbjct: 50 QLSKDKKMNRLNKLIEKSQIYSQIIADNILQTSLERKEEQNNV--APPAPVPAKSDS--K 105
Query: 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
NE ++ K ++ K A+ ++ VS
Sbjct: 106 NESDTQPIKKRRKTKPKSKSTANGKQDIVS 135
Score = 47 (21.6 bits), Expect = 3.8e-70, Sum P(3) = 3.8e-70
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 253 MSSILRVKQEGQNVTEK-PL----DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
+ + L K+E NV P+ DS N S++ P K + + +A+G+Q S+ S
Sbjct: 79 LQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGKQDIVSMLS 138
Query: 308 AN 309
N
Sbjct: 139 TN 140
Score = 38 (18.4 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 974 QREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYL 1012
+R I+LL+ + + + NKL+K KYL
Sbjct: 260 ERNDIDLLQQQETTNIILTSYEISIRDFNKLVKINWKYL 298
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 472 (171.2 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 118/305 (38%), Positives = 161/305 (52%)
Query: 1055 SDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGIL 1114
SD K E+ EK +S K + ++QP + GG+L++YQM GL WL++L+ N LNGIL
Sbjct: 142 SDSTKSTREAIEK---SQNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGIL 198
Query: 1115 ADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGP 1174
ADEMGLGKT+Q I+ + +L+E GPF W +EI +AP+I Y G
Sbjct: 199 ADEMGLGKTLQCISFLSHLIEN-GINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGT 257
Query: 1175 PEERRRLFKEKIVHQKF-NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233
+ER + + + Q+ N++LT+YE ++ D KL KI W Y+I+DEGHR+KN+ C L
Sbjct: 258 KQERNDI--DLLQQQETTNIILTSYE--ISIRDFNKLVKINWKYLIVDEGHRLKNSQCLL 313
Query: 1234 NADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFN------KPFE 1287
LK S+RLLLTGTP IF+ E F QWFN E
Sbjct: 314 IKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGE 373
Query: 1288 SNGDNSPDXXXXXXXXXXXI----INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 1343
G N+ + I I LH +L+PF+LRRLK V LP K E L+
Sbjct: 374 LEGTNNEEDEETKNLIKLNIQETLIKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPM 433
Query: 1344 SAYQK 1348
+ QK
Sbjct: 434 TKLQK 438
Score = 329 (120.9 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 84/244 (34%), Positives = 134/244 (54%)
Query: 1329 NELPEKIERLVRCE----ASAYQKLLMKRVEENLGSIGNSKGRSVHN-SVMELRNICNHP 1383
N P E LV+ + Q +L+ + +++ + +K + N +++LRNICN P
Sbjct: 535 NTTPSYDEALVKIRHIKSKTKIQSILIDAIYQDI--LKEAKHLKLQNLKMIQLRNICNSP 592
Query: 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443
++ + ++ + ++R K ++L++LLP L ++ H+VL F+ T++LD++E
Sbjct: 593 FIYYNYP-----ILDQ---AEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLE 644
Query: 1444 DYLT---FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 1500
D+L + RLDG T+ R I +FN F +FL S RAGG+G+NL AADT
Sbjct: 645 DWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK-FKVFLSSTRAGGLGINLVAADT 703
Query: 1501 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560
VI+ D DWNPQ+DLQA R HRIGQ V + RF ++EE + + + K + I
Sbjct: 704 VILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSKRFLERLVIQ 763
Query: 1561 AGFF 1564
G F
Sbjct: 764 MGQF 767
Score = 52 (23.4 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 18/90 (20%), Positives = 42/90 (46%)
Query: 991 RMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050
++ +D K +R+NKL+++++ Y Q + + + +N + V K + +
Sbjct: 50 QLSKDKKMNRLNKLIEKSQIYSQIIADNILQTSLERKEEQNNV--APPAPVPAKSDS--K 105
Query: 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
NE ++ K ++ K A+ ++ VS
Sbjct: 106 NESDTQPIKKRRKTKPKSKSTANGKQDIVS 135
Score = 47 (21.6 bits), Expect = 3.8e-70, Sum P(3) = 3.8e-70
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 253 MSSILRVKQEGQNVTEK-PL----DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
+ + L K+E NV P+ DS N S++ P K + + +A+G+Q S+ S
Sbjct: 79 LQTSLERKEEQNNVAPPAPVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGKQDIVSMLS 138
Query: 308 AN 309
N
Sbjct: 139 TN 140
Score = 38 (18.4 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 974 QREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYL 1012
+R I+LL+ + + + NKL+K KYL
Sbjct: 260 ERNDIDLLQQQETTNIILTSYEISIRDFNKLVKINWKYL 298
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 449 (163.1 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 104/298 (34%), Positives = 148/298 (49%)
Query: 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXX 1150
LREYQ GL WLV++Y +LNGILADEMGLGKT+ IAL+ +L K GP
Sbjct: 536 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTS 595
Query: 1151 XXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210
WE+E W P + Y G +ER+ + + F+V +TTY ++ D
Sbjct: 596 VMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQ--DSKMF 653
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXX 1270
+ +W Y+I+DE H IKN + L ++ S R+LLTGTP
Sbjct: 654 KRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH 713
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENE 1330
+F S ++F WF P + +I+RLH VLRPF+LRRLK VE +
Sbjct: 714 VFQSHQEFKDWFCNPIAGMVEGQEKINKE-------VIDRLHNVLRPFLLRRLKRDVEKQ 766
Query: 1331 LPEKIERLVRCEASAYQKLLMKRV---EENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
LP K E ++ C S Q+ L + E ++ + + + +M+LR +CNHP L
Sbjct: 767 LPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDL 824
Score = 360 (131.8 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 73/157 (46%), Positives = 99/157 (63%)
Query: 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468
CGKL+ L LL KLK HR L F+ MT++LDV+E ++ Y Y+RLDG T +R L
Sbjct: 1074 CGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTL 1133
Query: 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
+ +FN F+F+LS R+GGVG+NL ADTVI +D+DWNP +D QAQ R HRIGQ R+
Sbjct: 1134 MQRFNTNPK-IFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1192
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFD 1565
V + R + T+EE + A K + N I G ++
Sbjct: 1193 VHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYN 1229
Score = 66 (28.3 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 51/202 (25%), Positives = 88/202 (43%)
Query: 513 LVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVE-NLK 571
LV+ K Q N PS P +T + ++IPP +SS G LE+ S + + +LK
Sbjct: 162 LVEPYK-QGQNTPSK-PLLTIE--SKSDEERAEQIPPEINSSAG-LESGSPELDEDYDLK 216
Query: 572 MMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAI 631
D++ D +I E+ K + + E+++ + ++L T G ++
Sbjct: 217 SEDETEDDED-TIE-EDEKHFTKRERQEELEALQNEVDLPV-----EELLRRYTSGRVSR 269
Query: 632 -TNPVNDVENGHLFIGRANVASVTGINKPMNSEI-NSWTGIGSQNEVPRRPLPAP--TVQ 687
T+PV D EN N+ SV+ + P+ E ++ +G + + L A T
Sbjct: 270 ETSPVKD-EN------EDNLTSVSRVTSPVKDENQDNLASVGQDHGEDKNNLAASEETEG 322
Query: 688 HELVK-DNDPTQFKSFGHSGAS 708
+ V+ ND S+GH S
Sbjct: 323 NPSVRRSND-----SYGHLAIS 339
Score = 62 (26.9 bits), Expect = 4.2e-70, Sum P(3) = 4.2e-70
Identities = 30/148 (20%), Positives = 67/148 (45%)
Query: 929 EIEAHKERLDEV-FKIKRER---WRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIN 984
+++ ++RL +V I ++ W V K V H + + EK + +++ L +
Sbjct: 94 KLKEEEQRLRKVALNISKDMKKFWMKVEKLVLYKH---QLVRNEKKKKAMDKQLEFL-LG 149
Query: 985 DVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQE--AKSMASHFENEMD-ETQTVSV 1041
E Y M+ + + + K L + SK E A+ + + E+ + +
Sbjct: 150 QTERYSTMLAENLVEPYKQGQNTPSKPLLTIESKSDEERAEQIPPEINSSAGLESGSPEL 209
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYY 1069
E Y+ +++EDE++ + +E +EK++
Sbjct: 210 DEDYD--LKSEDETEDDEDTIEEDEKHF 235
Score = 62 (26.9 bits), Expect = 9.3e-69, Sum P(4) = 9.3e-69
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 241 GQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQ 300
GQ E +S++ +++ ++GQN KPL + + RA + P E+ SA G +
Sbjct: 149 GQTERYSTMLAE--NLVEPYKQGQNTPSKPLLTIESKSDEERAE--QIPPEINSSA-GLE 203
Query: 301 QGN 303
G+
Sbjct: 204 SGS 206
Score = 46 (21.3 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 1518 ARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559
+R H G+KRD++V +T + + +A +HK + N I
Sbjct: 1563 SRMHMKGKKRDLIV---DTDEEKTSKKKAK-KHKKSLPNSDI 1600
Score = 41 (19.5 bits), Expect = 6.6e-68, Sum P(3) = 6.6e-68
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 935 ERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINL--------LKINDV 986
ER ++ + K+ R +K + + R+ER +E+ R+++ +N+ +K+ +
Sbjct: 65 ERKWKLAQAKKVALRA-SKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKL 123
Query: 987 EGYL-RMVQDAKSDR-VNK----LLKETEKYLQKLGSKLQE 1021
Y ++V++ K + ++K LL +TE+Y L L E
Sbjct: 124 VLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVE 164
Score = 40 (19.1 bits), Expect = 4.2e-26, Sum P(4) = 4.2e-26
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 942 KIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV 1001
K+KR+ W +N + + I K+ +R+K L +++ ++++ KS R
Sbjct: 624 KLKRQGWMKLNSFHVCITTYRLVIQDSKM--FKRKKWKYLILDEAH----LIKNWKSQRW 677
Query: 1002 NKLLK-ETEKYLQKLGSKLQ 1020
LL +++ + G+ LQ
Sbjct: 678 QTLLNFNSKRRILLTGTPLQ 697
Score = 39 (18.8 bits), Expect = 9.3e-69, Sum P(4) = 9.3e-69
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 557 FLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEM 601
F+ A+ K+ E +++ AD+ H EE +A + E+EM
Sbjct: 375 FVLANGEEKDDEATLAVEEELAKADNEDHVEE---IALLQKESEM 416
Score = 38 (18.4 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVH 1370
+ ++LR + R+ + E + L S + ++NL S+G G +
Sbjct: 255 VEELLRRYTSGRVSRETSPVKDENEDNLT--SVSRVTSPVKDENQDNLASVGQDHGEDKN 312
Query: 1371 N 1371
N
Sbjct: 313 N 313
Score = 38 (18.4 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 8 ELEAAKFLHKLIQDSKDEPAKLA 30
E+ A F + IQ+SKD A +A
Sbjct: 924 EIRKAVFEER-IQESKDRAAAIA 945
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 749 (268.7 bits), Expect = 1.7e-70, P = 1.7e-70
Identities = 213/675 (31%), Positives = 338/675 (50%)
Query: 947 RWRGVN----KYV--KEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDR 1000
+W+G++ +V KEF K + HR K R+ + N+ E ++ +
Sbjct: 134 KWKGLSYLHCSWVPEKEFQKAYKSNHRLKT-RVNNFHRQMESFNNSEDDFVAIRPEWTT- 191
Query: 1001 VNKLL--KETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQA 1058
V+++L +E + L+ L K +E ++E+E D + + +++++ S
Sbjct: 192 VDRILACREEDGELEYL-VKYKELSYDECYWESESDISTFQNEIQRFKDVNSRTRRSKDV 250
Query: 1059 KHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEM 1118
H + N + + + P L+G L YQ+ GL +L ++ Q + ILADEM
Sbjct: 251 DH--KRNPRDF-------QQFDHTPEFLKG-LLHPYQLEGLNFLRFSWSKQTHVILADEM 300
Query: 1119 GLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER 1178
GLGKT+Q IAL+ L E + P WE E WAP+++ ++Y G + R
Sbjct: 301 GLGKTIQSIALLASLFE--ENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQAR 358
Query: 1179 ---RR----LFKE--KIVHQKFNVLLTT-------YEYLMNKH-----DRPKLSKIQWHY 1217
R L K+ KI +K + + ++ L+ + D L I+W
Sbjct: 359 AVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWEC 418
Query: 1218 IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 1277
+I+DEGHR+KN KL + L Y S+HR+LLTGTP F S E+
Sbjct: 419 MIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 478
Query: 1278 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337
F + F + N + I+RLH++L P +LRR+K V ++P K E
Sbjct: 479 FQEEFK---DINQEEQ--------------ISRLHKMLAPHLLRRVKKDVMKDMPPKKEL 521
Query: 1338 LVRCEASAYQKLLMKRVEENLGSIGNSKGR---SVHNSVMELRNICNHPYLSQLHAEEVD 1394
++R + S+ QK K + + KG S++N +MELR +C HPY+ E V+
Sbjct: 522 ILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYM----LEGVE 577
Query: 1395 TLI--PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYR 1452
+I ++ CGKL++LD+++ KLK HRVL ++ +LD++EDY T K+++
Sbjct: 578 PVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQ 637
Query: 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV 1512
Y R+DG G +R ID+FN ++S F FLLS RAGG+G+NL ADTVII+D+DWNP
Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 697
Query: 1513 DLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
DLQA ARAHR+GQ V++ R T+EE++ + K+ V + N + E+
Sbjct: 698 DLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKM-VLEHLVVGKLKTQNINQEE 756
Query: 1573 RREYLESLLRECKKE 1587
L+ ++R KE
Sbjct: 757 ----LDDIIRYGSKE 767
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 770 (276.1 bits), Expect = 2.9e-70, Sum P(5) = 2.9e-70
Identities = 197/570 (34%), Positives = 294/570 (51%)
Query: 1049 VENEDESDQAKHYLESNE-------KYYLMAH-SIKESVSEQPTCLQGGKLREYQMSGLR 1100
+E + ++D+ + YL N+ K H + + + + P G LR YQ+ GL
Sbjct: 1979 LEEDVDNDKIEQYLRFNKIPQRSEWKSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLN 2038
Query: 1101 WLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEIN 1160
WL + N N ILADEMGLGKT+Q + + + E RGPF W+ E
Sbjct: 2039 WLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEY-GIRGPFLVIAPLSTIPNWQREFE 2097
Query: 1161 FWAPRIHKIVYCGPPEERRRL------FKE---KIVHQ--KFNVLLTTYEYLMNKHDRPK 1209
W ++ +VY G ++ + +K K++ + KFNVL+TT+E ++ D
Sbjct: 2098 GWTD-MNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVT--DYMD 2154
Query: 1210 LSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXX 1269
L W +IDE HR+KN +CKL L+ HR+LL+GTP
Sbjct: 2155 LKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEP 2214
Query: 1270 XIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVEN 1329
F+S E+F F + + +N+L +L+P +LRRLK VE
Sbjct: 2215 SQFSSQEEFMSEFGS-LRTEEE----------------VNKLQALLKPMMLRRLKDDVEK 2257
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRV-EENLGSI--GNSKGR--SVHNSVMELRNICNHPY 1384
L K E ++ E + QK + + E+N + G + ++ N++MELR C HPY
Sbjct: 2258 SLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPY 2317
Query: 1385 LSQLHAEEVDTLI-------PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR 1437
L E++ P+ Y ++ GK+ ++D+LLPKLKA HRVL FS M R
Sbjct: 2318 LLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVR 2377
Query: 1438 LLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 1497
LD++EDYL +++Y + R+DG G R ID++++ S F+FLL +AGG+G+NL A
Sbjct: 2378 CLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA 2437
Query: 1498 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN- 1556
ADTVII+D+DWNPQ DLQAQAR HRIGQ++ V + R T E ++ A KLG+
Sbjct: 2438 ADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKA 2497
Query: 1557 --QSI-TAGFFDNNTSAEDRREYLESLLRE 1583
QS+ T G D N ++E +E LL++
Sbjct: 2498 VLQSMNTQGSKDGNNKQLSKKE-IEDLLKK 2526
Score = 69 (29.3 bits), Expect = 8.0e-70, Sum P(6) = 8.0e-70
Identities = 50/233 (21%), Positives = 83/233 (35%)
Query: 80 TSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY 139
T G+Q Q A SS + + L + M +P T + +
Sbjct: 661 TGGAQNQHQQQPQLAAMSSPLHQQNLPNMHHLIQPTMETTQP-TQQQQQTSQQQQQPQQP 719
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQ---ERQKDGKKASTKRKRGDSSISHEPQNE 196
QA+ T Q H+SP +S + Q Q + GD+ + Q
Sbjct: 720 QATLTSPHHQQMQHQSPIHQQQQSPHHQQHLPSYNQSQQQFDPFANILGDNQPAASQQTM 779
Query: 197 NPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSI 256
+P + S V + + ++ V ++Q + Q + S+ S ++SSI
Sbjct: 780 SPAHVSS--PVPAQMQQQQHQTQQQPSQQVPQSQQQQVSQPQQQTQQQQPSTPSHHLSSI 837
Query: 257 LRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSAN 309
L + N + +AN SN+ +SNS V + NS SS N
Sbjct: 838 LN-ETANSNDSSTLAVAANDSNN--SSSNSSTNSIVNNQPTSVHDSNSQSSIN 887
Score = 64 (27.6 bits), Expect = 2.9e-70, Sum P(5) = 2.9e-70
Identities = 42/169 (24%), Positives = 62/169 (36%)
Query: 158 SLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR-----NSVVNPR- 211
S D SAN GKK ++ R + P++ P+ + NS P
Sbjct: 1285 SQDVHSANELDTSTDGSGKKKKPRKPRTPKDPNKPPRDRTPKAKKPKDPNDPNSTETPAA 1344
Query: 212 -KGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSL---SGNMSSILRVKQEGQNVT 267
K + + GAEQ+ G ++E L +G+ G V
Sbjct: 1345 VKKRAGASKRRKQYGEDGAEQTG-----EGSEVEDNKPLVPKAGSADGEAETTSGGTGVD 1399
Query: 268 -EKP-LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLAS 314
E P D VS +PR SN +E E A G + +S+ + G AS
Sbjct: 1400 GESPDYDDIPVSK-IPRGSNE---DEKEAEA-GDETVDSVPDSAGDPAS 1443
Score = 64 (27.6 bits), Expect = 1.3e-68, Sum P(7) = 1.3e-68
Identities = 40/204 (19%), Positives = 91/204 (44%)
Query: 113 ENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQ 172
+ + S+ P + + P ++ +H S S +E+ +S D+ + + +
Sbjct: 800 QQQPSQQVPQSQQQQVSQPQQQTQQQQPSTPSHHLS-SILNETANSNDSSTLAVAANDSN 858
Query: 173 KDGKKASTKRKRGDSSISHEPQN--ENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAE 230
+ST +S ++++P + ++ Q +S N ++ M+ ++ GG S + A+
Sbjct: 859 NSSSNSST-----NSIVNNQPTSVHDSNSQSSINSSSNNQQQLLMDNTNSHGGNS-ESAQ 912
Query: 231 QSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPE 290
+ ++ G ++ +S+S N +++ V + LDS NS ++SN++F +
Sbjct: 913 NAGVDV----GLFDN-NSMSSNSAAVAAVASNAASAAAALLDS----NS--QSSNAEFEK 961
Query: 291 EVEVSASGQQQGNSLSSANGVLAS 314
Q +G L GV+A+
Sbjct: 962 N-------QSEGEGLGVVEGVIAN 978
Score = 59 (25.8 bits), Expect = 2.9e-70, Sum P(5) = 2.9e-70
Identities = 36/141 (25%), Positives = 62/141 (43%)
Query: 931 EAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL 990
EA E+ E +I+ E+ R VKE + ++ + EK + K + I DVE Y
Sbjct: 1830 EATTEKNKESLEIEGEKER-----VKEGEESVKKENDEKTEADMENKPEPVFI-DVEEYF 1883
Query: 991 RMVQD-----AKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDE--TQTVSVVE 1043
++ + +LLK + K+ Q+ + FEN DE Q + V+
Sbjct: 1884 VKYRNFSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQLNIFENIEDEPFNQDFTEVD 1943
Query: 1044 KY-EPAVENEDESDQA-KHYL 1062
+ + +V ++ S + KHYL
Sbjct: 1944 RVLDMSVHTDETSGETTKHYL 1964
Score = 55 (24.4 bits), Expect = 2.7e-69, Sum P(4) = 2.7e-69
Identities = 56/266 (21%), Positives = 99/266 (37%)
Query: 115 EMSKIEPFTSSRP--PVAPSGAGHDYYQASGTHRSSQSFDHES-PSSLDTRSANSQSQER 171
E S++E ++P P A S G + GT +S D++ P S R +N +E
Sbjct: 1368 EGSEVE---DNKPLVPKAGSADGEAETTSGGTGVDGESPDYDDIPVSKIPRGSNEDEKEA 1424
Query: 172 QK-DGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAE 230
+ D S GD + + ++ SR + + G K G S K +
Sbjct: 1425 EAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRNANSEEGGSARK--NRGSLSAKALK 1482
Query: 231 Q--SNFNMVP-SGGQMEHF-----------SSLSGNMSSILRVKQEGQNVTEKPLDSANV 276
+ + +VP S G+ + S + N R Q + + + L ++
Sbjct: 1483 KRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKRRSSRNTQRKKYIDDVMLRFSDD 1542
Query: 277 SNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN----RAGFPF-ERSQ 331
NS+ AS K ++ +AS G+ + + G Q ++ P E SQ
Sbjct: 1543 ENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSGAEGDAAQEVGEEKSNLPLDESSQ 1602
Query: 332 VPRFPGNMMIETPMQQPTVSSLGANA 357
+ + +Q +S+ ANA
Sbjct: 1603 LEASSSTSAVAEKERQ--ISTDAANA 1626
Score = 52 (23.4 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 31/130 (23%), Positives = 49/130 (37%)
Query: 84 QIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKI-------EPFTSSRPPVAPSGAGH 136
++G S S+ ++SKA + E++ S + EP T A
Sbjct: 1749 EVGKSDKESKPEEQSETVKTEENSKA-IEEDKSSTVLTADHAKEPETVLEKMEVDEKAND 1807
Query: 137 DYYQASGTHRSSQ-SFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN 195
D S S + S D +P T N +S E + G+K K G+ S+ E N
Sbjct: 1808 DQSAVSKAEGSDEKSTDDSNPEEATTEK-NKESLEIE--GEKERVKE--GEESVKKE--N 1860
Query: 196 ENPQQLDSRN 205
+ + D N
Sbjct: 1861 DEKTEADMEN 1870
Score = 52 (23.4 bits), Expect = 2.9e-66, Sum P(5) = 2.9e-66
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 1024 SMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
S SH + + + QT ++ P + + QA L S+ +Y + +S +P
Sbjct: 353 SYGSHHQQQQQQQQTQQQQQQSAPPYMSSSKHQQAAAQLNSSPQYRAPFPQLSPQMSPRP 412
Score = 51 (23.0 bits), Expect = 2.9e-70, Sum P(5) = 2.9e-70
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 773 RNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRK 813
RN + E D ED +L PP+P SE MD KR+
Sbjct: 1485 RNRGRIVPESDGEDDTLDRTPPPSPPPD-SE---MDSNKRR 1521
Score = 50 (22.7 bits), Expect = 1.0e-69, Sum P(6) = 1.0e-69
Identities = 69/324 (21%), Positives = 117/324 (36%)
Query: 492 EIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGG 551
+I + I PR G N D E D V S D + P T P R R T R
Sbjct: 1407 DIPVSKI-PR-GSNEDEKEAEAGDET-VDSVPDSAGDPAST-P-SRRDRKRSTARSRRNA 1461
Query: 552 SSS-GGFLEADSSSKEVENLKMMDKSG---PPADHSIHAEERKQLATGKLEAEMQSQETA 607
+S GG + S + LK G P +D +R + ++EM S +
Sbjct: 1462 NSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKRR 1521
Query: 608 ESQAFFTSASQQLESASTR-----GTLAITNPVNDVENGHLFIGRANVASVTGINKPMNS 662
S+ T + ++ R +L + +PV + +N S +P +
Sbjct: 1522 SSRN--TQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSG 1579
Query: 663 EINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSI 722
G +Q EV P + ++ + T + S + AN+ +SS
Sbjct: 1580 A----EGDAAQ-EVGEEKSNLPLDESSQLEASSSTSAVAEKERQISTDA-ANAAMSS--- 1630
Query: 723 RDQWKPVSGTDSDRYSLIPVKDASGM-LRHTSQDDPKFSDGSRTIPVDNSVRNGIS-LTT 780
+ + ++ D D ++ + A M R D PK P + ++ + TT
Sbjct: 1631 KPNYVYINTGDEDSM-VVQLVLAMRMGKRELILDKPKEKAPE---PKQDEEKSELDEATT 1686
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEK 804
++ E D+ T+ T SE+
Sbjct: 1687 DKPEGDEKFKTEGESKKDLTDSEE 1710
Score = 50 (22.7 bits), Expect = 8.9e-69, Sum P(4) = 8.9e-69
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 96 SSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHES 155
+S VA VK K A S P SGA D Q G +S+ D ES
Sbjct: 1544 NSLLVASPVKKDKKPSANASNSNAGSDVEKTEP--QSGAEGDAAQEVGEEKSNLPLD-ES 1600
Query: 156 PSSLDTRSANSQSQERQK 173
S L+ S+ S E+++
Sbjct: 1601 -SQLEASSSTSAVAEKER 1617
Score = 49 (22.3 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 49/258 (18%), Positives = 100/258 (38%)
Query: 74 SSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG-LAENEMSKIEPFTSSRPPVAP- 131
+S+ P+ + SQ Q + Q+ + D G + + +P +A
Sbjct: 618 TSQPPVVAASQQQQQQQHQQQSLNDQLQHSINDIVGGGNSSGATGGAQNQHQQQPQLAAM 677
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKAST--KRKRGDSSI 189
S H + H + + P+ +++ Q Q +Q S ++ + S I
Sbjct: 678 SSPLHQQNLPNMHHLIQPTMETTQPTQQQQQTSQQQQQPQQPQATLTSPHHQQMQHQSPI 737
Query: 190 SHEPQNENPQQ-LDSRNSVVNPRKGKMNKV-DAPGGFSVKGAEQSNFNM-VPSG-GQMEH 245
+ Q+ + QQ L S N N + D S + ++ + VP+ Q +H
Sbjct: 738 HQQQQSPHHQQHLPSYNQSQQQFDPFANILGDNQPAASQQTMSPAHVSSPVPAQMQQQQH 797
Query: 246 FSSLSGNM----SSILRVKQ-EGQNVTEKP-LDSANVSNSVPRASNSKFPEEVEVSASGQ 299
+ + S +V Q + Q ++P S ++S+ + +NS + V+A+
Sbjct: 798 QTQQQPSQQVPQSQQQQVSQPQQQTQQQQPSTPSHHLSSILNETANSNDSSTLAVAANDS 857
Query: 300 QQGNSLSSANGVLASRGT 317
+S SS N ++ ++ T
Sbjct: 858 NNSSSNSSTNSIVNNQPT 875
Score = 48 (22.0 bits), Expect = 1.0e-67, Sum P(5) = 1.0e-67
Identities = 31/189 (16%), Positives = 68/189 (35%)
Query: 113 ENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQ 172
+ E S+++ T+ +P G + ++ G + + E+ +S+ +
Sbjct: 1675 DEEKSELDEATTDKPE------GDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEP 1728
Query: 173 KDGKKASTKRKRGDS-SISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQ 231
D KK+ K D + E + + S + ++ +V A+
Sbjct: 1729 DDSKKSDEDNKDKDKMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTADH 1788
Query: 232 SNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEE 291
+ +ME + + S++ K EG + EK D +N A+ K E
Sbjct: 1789 AKEPETVLE-KMEVDEKANDDQSAVS--KAEGSD--EKSTDDSNPEE----ATTEKNKES 1839
Query: 292 VEVSASGQQ 300
+E+ ++
Sbjct: 1840 LEIEGEKER 1848
Score = 48 (22.0 bits), Expect = 2.7e-67, Sum P(7) = 2.7e-67
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 550 GGSSSGGFLEADSSSKEVENLKMMD-----KSGPPADHSIHAE-ERKQLATGKLEAEMQS 603
GG+SSG A + ++ L M ++ P H I E Q + + Q
Sbjct: 654 GGNSSGATGGAQNQHQQQPQLAAMSSPLHQQNLPNMHHLIQPTMETTQPTQQQQQTSQQQ 713
Query: 604 QETAESQAFFTSAS-QQLESAS 624
Q+ + QA TS QQ++ S
Sbjct: 714 QQPQQPQATLTSPHHQQMQHQS 735
Score = 47 (21.6 bits), Expect = 1.8e-66, Sum P(7) = 1.8e-66
Identities = 25/106 (23%), Positives = 43/106 (40%)
Query: 519 VQSSNDPSSAPGVTAPYGRLGNARETDRIPPG-GSSSGGFLEADSSSKEVENLKMMDKSG 577
VQ+ P+ +PYG + + P G G +A + + V G
Sbjct: 237 VQAGQPPTPQAYAHSPYGSPMQHQPSRGAPQHVGYGHTGLDQASAYGQHVPG-------G 289
Query: 578 PPADHSIHAEERK---QL-ATGKLEAEMQSQETAESQAFFTSASQQ 619
P H + A++++ QL A + + + Q Q+ A+ Q S QQ
Sbjct: 290 APPGHHLSAQQQQAAQQLGAHQQQQLQSQQQQQAQQQQPHVSLMQQ 335
Score = 45 (20.9 bits), Expect = 1.0e-67, Sum P(7) = 1.0e-67
Identities = 18/91 (19%), Positives = 43/91 (47%)
Query: 994 QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDET-QTVSVVEKYEPA-VEN 1051
QD + +++ + + +K ++ + K + E +++ + V E+ EP +
Sbjct: 1674 QDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDDSKK 1733
Query: 1052 EDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
DE ++ K +E +++ + S KES E+
Sbjct: 1734 SDEDNKDKDKMEVDDE---VGKSDKESKPEE 1761
Score = 44 (20.5 bits), Expect = 2.7e-67, Sum P(7) = 2.7e-67
Identities = 37/160 (23%), Positives = 66/160 (41%)
Query: 50 PYQVISRAMETVINQNGLD-MEALKSSR-LPLTSGS----QIGDSSTAQCAGSSSQVAGV 103
P QV+S +Q+ + M L S R P TSG+ G + A + + +
Sbjct: 448 PQQVVSNQP----SQHSIQGMVGLPSPRPQPPTSGAGGAGAKGPAPVAAPVNTLQALEQM 503
Query: 104 VKDSKA-GLAENEM-SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT 161
V S+A GL + S R P +P + Q H +Q ++L
Sbjct: 504 VMPSQALGLPPMDYPSAYRSAVGPRMPASPQQQQQQHQQWGAAH-GAQHL-----AALQQ 557
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
+ A Q Q+ Q+ ++A ++++ +++ Q + QQL
Sbjct: 558 QQAQQQQQQVQQQ-QQAPPQQQQ-QAAMLQAQQQHHQQQL 595
Score = 44 (20.5 bits), Expect = 2.0e-65, Sum P(5) = 2.0e-65
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 1035 ETQTVSVVEKYEPAVENEDESDQAKHYLES-NEKYYLMAHSIKESVSE-QPTCLQGGKLR 1092
+ Q V V P V + Q +H +S N++ + HSI + V + GG
Sbjct: 610 QQQVVPPVTSQPPVVAASQQQQQQQHQQQSLNDQ---LQHSINDIVGGGNSSGATGGAQN 666
Query: 1093 EYQ 1095
++Q
Sbjct: 667 QHQ 669
Score = 43 (20.2 bits), Expect = 1.0e-67, Sum P(5) = 1.0e-67
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 73 KSSRLPLTSGSQI-GDSSTAQCAGSSSQVA 101
+ S LPL SQ+ SST+ A Q++
Sbjct: 1591 EKSNLPLDESSQLEASSSTSAVAEKERQIS 1620
Score = 42 (19.8 bits), Expect = 6.4e-68, Sum P(5) = 6.4e-68
Identities = 25/115 (21%), Positives = 45/115 (39%)
Query: 82 GSQIGDSST-AQCAGSSSQVAGVVKDSKAGLA-ENEMSKIEPFTSSRPPVAPSGAGHDYY 139
GS++ D+ AGS+ G + + G + E + S+ P G+ D
Sbjct: 1369 GSEVEDNKPLVPKAGSAD---GEAETTSGGTGVDGESPDYDDIPVSK---IPRGSNEDEK 1422
Query: 140 QASGTHRSSQSF-----DHES-PSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
+A + S D S PS D + + ++S+ + S ++ RG S
Sbjct: 1423 EAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRNANSEEGGSARKNRGSLS 1477
Score = 41 (19.5 bits), Expect = 6.2e-67, Sum P(6) = 6.2e-67
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSIS 190
+SAN + R K G+KA +++ IS
Sbjct: 1208 KSANKPRKPRAKKGEKAQVGQQQDLMDIS 1236
Score = 40 (19.1 bits), Expect = 8.0e-70, Sum P(6) = 8.0e-70
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 504 GNVDGSRRELVDTMKVQSSNDPSSAPGVTAP 534
G++ S E T++ + SAPGV P
Sbjct: 1026 GDLSKSLLEEPKTVEESGEDKSQSAPGVAPP 1056
Score = 40 (19.1 bits), Expect = 1.0e-69, Sum P(6) = 1.0e-69
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 412 GSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKE 464
G L D + V +G N+V + S D T V + + E
Sbjct: 1227 GQQQDLMDISGNVAMGAANAVSSIPTTQLPVSEDCVTQGAGDTSVVGMLEYSE 1279
Score = 40 (19.1 bits), Expect = 1.2e-69, Sum P(5) = 1.2e-69
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 341 IETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSA 400
+E Q A G+ +P+ SS +SA++ E Q+ ST D +A
Sbjct: 1571 VEKTEPQSGAEGDAAQEVGEEKSNLPLDESSQLEASSSTSAVAEKERQI-ST---DAANA 1626
Query: 401 MLSS 404
+SS
Sbjct: 1627 AMSS 1630
Score = 40 (19.1 bits), Expect = 3.9e-69, Sum P(7) = 3.9e-69
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 518 KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSG 577
K + NDP+S A R G ++ + G+ G + S E +N ++ K+G
Sbjct: 1329 KPKDPNDPNSTETPAAVKKRAGASKRRKQYGEDGAEQTG----EGSEVE-DNKPLVPKAG 1383
Score = 40 (19.1 bits), Expect = 6.9e-67, Sum P(7) = 6.9e-67
Identities = 55/266 (20%), Positives = 83/266 (31%)
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHE---SPSSLDTRSANSQSQER-QKDGK 176
P + P P H Y + H+ S+ + LD SA Q G
Sbjct: 235 PTVQAGQPPTPQAYAHSPYGSPMQHQPSRGAPQHVGYGHTGLDQASAYGQHVPGGAPPGH 294
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNM 236
S ++++ + Q + Q + P M + PG G + M
Sbjct: 295 HLSAQQQQAAQQLGAHQQQQLQSQQQQQAQQQQPHVSLMQQQQLPGA----GLPPPHMGM 350
Query: 237 VPSGGQMEHFSSLSGNMSSILRVKQEGQNV--TEKPLDSANVSNSVP--RA-----SNSK 287
PS G H + + +Q + K +A NS P RA S
Sbjct: 351 PPSYGS--HHQQQQQQQQTQQQQQQSAPPYMSSSKHQQAAAQLNSSPQYRAPFPQLSPQM 408
Query: 288 FPEEVEVSASGQQQGNSLS-SANGVLASRGTWNQNRAGFPFER-SQVPR---FPGNMMIE 342
P +S Q + S + Q +A P + S P G + +
Sbjct: 409 SPRPPTMSPHPQMSPRPVGVSPAKPPPPQQQQQQTQAQQPQQVVSNQPSQHSIQGMVGLP 468
Query: 343 TPMQQPTVSSLG-ANAFGKVHGAMPI 367
+P QP S G A A G A P+
Sbjct: 469 SPRPQPPTSGAGGAGAKGPAPVAAPV 494
Score = 39 (18.8 bits), Expect = 2.9e-70, Sum P(5) = 2.9e-70
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 1567 NTSAEDRREYLESLLR 1582
N A++++++LESL R
Sbjct: 5065 NVQAKEQQKWLESLAR 5080
Score = 39 (18.8 bits), Expect = 2.7e-67, Sum P(7) = 2.7e-67
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 672 SQNEVPRRPLP-APTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVS 730
+Q + P P ++ +E ND + + S N +NS +S + +Q P S
Sbjct: 822 TQQQQPSTPSHHLSSILNETANSNDSSTLAVAAND--SNNSSSNSSTNSI-VNNQ--PTS 876
Query: 731 GTDSDRYSLI 740
DS+ S I
Sbjct: 877 VHDSNSQSSI 886
Score = 37 (18.1 bits), Expect = 1.4e-66, Sum P(7) = 1.4e-66
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 324 GFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIG 368
G+P R + P P + P QPT +L AM +G
Sbjct: 43 GYP-PRHRPPH-PLQQQPQYPSYQPTAENLYGLGAADHQAAMGLG 85
Score = 37 (18.1 bits), Expect = 1.4e-66, Sum P(7) = 1.4e-66
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 129 VAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
+A GA G+ Q + P+ + A Q+ Q+ ++ + ++
Sbjct: 156 LASYGAQQSMMAGYGSLAPQQQQQQQPPTPQQQQQAQQVQQQAQQQQQQQQQQSQQQARL 215
Query: 189 ISHEPQ 194
H PQ
Sbjct: 216 PQHYPQ 221
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 500 (181.1 bits), Expect = 5.7e-70, Sum P(2) = 5.7e-70
Identities = 105/250 (42%), Positives = 156/250 (62%)
Query: 1308 INRLHQVLRPFVLRRLKHKV-ENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSK 1365
I+RLHQ+L P +LRRLK V ++++P K E ++R + S+ QK + K V N + +
Sbjct: 422 ISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKR 481
Query: 1366 GRSVHNSVMELRNICNHPYLS---QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 1422
+ N +M+LR +C+HPYL + E+ + K ++ GKL++LD+++ KL
Sbjct: 482 DAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTK-----LLEASGKLQLLDKMMVKL 536
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
K HRVL ++ L ++EDY TFK + Y R+DG SG +R ID+FN ++S F F
Sbjct: 537 KEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCF 596
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LLS RAGG+G+NL ADTVII+D+DWNP DLQA AR HR+GQ V++ R TVEE
Sbjct: 597 LLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEE 656
Query: 1543 QVRASAEHKL 1552
++ ++K+
Sbjct: 657 RMMEITKNKM 666
Score = 305 (112.4 bits), Expect = 5.7e-70, Sum P(2) = 5.7e-70
Identities = 106/356 (29%), Positives = 165/356 (46%)
Query: 947 RWRGVN----KYV--KEFHKR-KERIHRE---KIDRIQREKINLLKINDVEGYLRMVQDA 996
+W+G++ +V +EF K K H + ++ R + N ++ + +
Sbjct: 82 KWKGLSYLHCSWVPEQEFEKAYKSHPHLKLKLRVTRFNAAMDVFIAENGAHEFIAIRPEW 141
Query: 997 KS-DRVNKLLK--ETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
K+ DR+ + + E+YL K +E S++E+E D + + +++++ + +
Sbjct: 142 KTVDRIIACREGDDGEEYLVKY----KELSYRNSYWESESDISDFQNEIQRFKD-INSSS 196
Query: 1054 ESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGI 1113
D+ Y+E NE+ K+ P L G L YQ+ GL +L ++ + N I
Sbjct: 197 RRDK---YVE-NERN---REEFKQ-FDLTPEFLTG-TLHTYQLEGLNFLRYSWSKKTNVI 247
Query: 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCG 1173
LADEMGLGKT+Q IA + L E + P WE E WAP ++ ++Y G
Sbjct: 248 LADEMGLGKTIQSIAFLASLFE--ENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTG 305
Query: 1174 PPEERRRLFKEKIVHQ-----KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
E R +++ + KF+VLLTTYE M LS I+W +IIDEGHR+KN
Sbjct: 306 DSEARDVIWEHEFYFSEGRKSKFDVLLTTYE--MVHPGISVLSPIKWTCMIIDEGHRLKN 363
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNK 1284
KL + L + S H +LLTGTP F S E F Q NK
Sbjct: 364 QKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKF-QDINK 418
Score = 40 (19.1 bits), Expect = 4.3e-42, Sum P(2) = 4.3e-42
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 412 GSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSV 451
GS D N+ Q+ R + + +LR + +D K V
Sbjct: 408 GSLEKFQDINKEEQISRLHQMLAPHLLRRL-KKDVLKDKV 446
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 734 (263.4 bits), Expect = 8.4e-70, Sum P(3) = 8.4e-70
Identities = 179/464 (38%), Positives = 246/464 (53%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 671 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 730
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 731 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 790
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 791 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 848
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 849 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 891
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 892 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 951
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 952 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1011
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 1012 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1071
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ +
Sbjct: 1072 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 64 (27.6 bits), Expect = 8.4e-70, Sum P(3) = 8.4e-70
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
E P L + + + +E + GK+ K+K G + E +++ ++ +S S +P K
Sbjct: 16 EEPVGLPKKKKSKKLKENRSKGKR---KKKEGSNDELSENEDDLEEKSESEGSDYSPNKK 72
Query: 214 KMNKV 218
K K+
Sbjct: 73 KKKKL 77
Score = 54 (24.1 bits), Expect = 9.3e-69, Sum P(3) = 9.3e-69
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+ + +S S S N + +++ KD K+ KRKR D
Sbjct: 52 NEDDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKRKD 91
Score = 51 (23.0 bits), Expect = 4.1e-69, Sum P(2) = 4.1e-69
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S LD+ S +S S + GKK+ +RK R D +E +++
Sbjct: 263 SSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDDGDGYETDHQD 318
Score = 40 (19.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 179 STKRKRGDSSISHEPQNENPQQLDS 203
S KRK+G SS E + E LDS
Sbjct: 256 SNKRKKGSSS--EEDEREE-SDLDS 277
Score = 39 (18.8 bits), Expect = 8.4e-70, Sum P(3) = 8.4e-70
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 211 RKGKMNKVDAPG-GFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRV--KQEGQNVT 267
RK K + PG +KG++ + G ++ G +S+ + E
Sbjct: 214 RKAKTKEGKGPGVRKKIKGSKDAKKK--GKGRKVAGLKFRFGGISNKRKKGSSSEEDERE 271
Query: 268 EKPLDSANVSNSVPRASNS 286
E LDSA++ +S R+ S
Sbjct: 272 ESDLDSASIHSSSVRSEGS 290
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 758 (271.9 bits), Expect = 8.9e-70, Sum P(2) = 8.9e-70
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 715 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 774
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 775 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 834
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 835 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 892
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 893 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 942
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 943 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 996 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1055
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1056 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1115
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1220
Score = 46 (21.3 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 27/114 (23%), Positives = 41/114 (35%)
Query: 109 AGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQS 168
AG E +M + +S PP P S T + D + S+
Sbjct: 13 AGSEEEDMDAL--LNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKR 70
Query: 169 QERQKDGKKASTKRKRGDSSISH----EPQNENPQQLDSRNSVVNPRKGKMNKV 218
Q++++ R+ GDSS E + E + DS S P K K K+
Sbjct: 71 QKKER----MLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Score = 45 (20.9 bits), Expect = 8.9e-70, Sum P(2) = 8.9e-70
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
E ++ ET+T + +K +P + + ++K + E+ L+ + +S E P
Sbjct: 40 EEDLSETETPKLKKKKKPKKPRDPKIPKSKR--QKKERM-LLCRQLGDSSGEGP 90
Score = 45 (20.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 321 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 360
Score = 43 (20.2 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 28 LPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQK 72
Score = 43 (20.2 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ E +L + S S +K KK K+++ S E + E DS+
Sbjct: 94 EEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 146
Score = 43 (20.2 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQN 819
S GS +D + N + ++EED PK +K + R + ++
Sbjct: 12 SAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKK---PKKPRDPKIPKS 68
Query: 820 WILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
K+QK K+RM C +L +S + + + V
Sbjct: 69 ---KRQK-KERMLLC-RQLGDSSGEGPEFVEEEEEV 99
Score = 40 (19.1 bits), Expect = 9.2e-68, Sum P(3) = 9.2e-68
Identities = 28/123 (22%), Positives = 40/123 (32%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV-KGAEQSNFNMV------PSGGQMEH 245
P+NE + D + P+ K K P + K Q M+ S G+
Sbjct: 33 PENEEDPEEDL-SETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPE 91
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL 305
F ++ LR EG + T + + S SK EE E
Sbjct: 92 FVEEEEEVA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPK 149
Query: 306 SSA 308
SSA
Sbjct: 150 SSA 152
Score = 40 (19.1 bits), Expect = 1.1e-66, Sum P(4) = 1.1e-66
Identities = 24/134 (17%), Positives = 50/134 (37%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 19 DMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLL 78
Query: 125 SRPPVAPSGAGHDYYQAS---GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTK 181
R SG G ++ + S+ D+ +P + + +++ K K+ +
Sbjct: 79 CRQLGDSSGEGPEFVEEEEEVALRSDSEGSDY-TPGKKKKKKLGPKKEKKSKS-KRKEEE 136
Query: 182 RKRGDSSISHEPQN 195
+ D S EP++
Sbjct: 137 EEEDDDDDSKEPKS 150
Score = 37 (18.1 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 686 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 727
Score = 37 (18.1 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQRE 976
K+++ G K K KRKE E D +E
Sbjct: 115 KKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKE 147
Score = 37 (18.1 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 266 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 310
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 758 (271.9 bits), Expect = 1.9e-69, Sum P(3) = 1.9e-69
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 708 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 767
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 768 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 827
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 828 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 885
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 886 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 935
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 936 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1048
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1049 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1108
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1213
Score = 56 (24.8 bits), Expect = 1.9e-69, Sum P(3) = 1.9e-69
Identities = 25/116 (21%), Positives = 42/116 (36%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGN 252
P+NE+ + D + P+ K K P + +++ + S G+ F + +
Sbjct: 33 PENEDDPEEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEF--VEED 89
Query: 253 MSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
+ LR EG + T + + S SK EE E SSA
Sbjct: 90 EEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSA 145
Score = 50 (22.7 bits), Expect = 9.8e-68, Sum P(4) = 9.8e-68
Identities = 18/72 (25%), Positives = 26/72 (36%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQET 606
+PP + E D S E LK K P D I +R++ G E
Sbjct: 28 LPPPHPENEDDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVE 87
Query: 607 AESQAFFTSASQ 618
+ +A S S+
Sbjct: 88 EDEEAALRSDSE 99
Score = 49 (22.3 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 20/102 (19%), Positives = 37/102 (36%)
Query: 106 DSKAGLAENEMSKIEPFTSS---RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTR 162
D + L+E E K++ R P P + + + + ++L +
Sbjct: 38 DPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEDEEAALRSD 97
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
S S +K KK K+++ S E + E DS+
Sbjct: 98 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 139
Score = 45 (20.9 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 314 FDDASINSYSVSDGSTSRSSRSRKKLRTAKKKKKGEEEVT 353
Score = 39 (18.8 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 12/66 (18%), Positives = 26/66 (39%)
Query: 132 SGAGHDYYQAS--GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSI 189
SG G ++ + RS +P + + +++ K K+ + + D
Sbjct: 79 SGEGPEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKS-KRKEEEEEEDDDDD 137
Query: 190 SHEPQN 195
S EP++
Sbjct: 138 SKEPKS 143
Score = 37 (18.1 bits), Expect = 1.9e-69, Sum P(3) = 1.9e-69
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 679 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 720
Score = 37 (18.1 bits), Expect = 9.8e-68, Sum P(4) = 9.8e-68
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQRE 976
K+++ G K K KRKE E D +E
Sbjct: 108 KKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKE 140
Score = 37 (18.1 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 259 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 303
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 713 (256.0 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 173/470 (36%), Positives = 250/470 (53%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXX 1149
KLR+YQ+ GL W+V + + ILADEMGLGKT+Q I+L+ L + GP+
Sbjct: 404 KLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPL 463
Query: 1150 XXXXGWESEINFWAPRIHKIVYCGPPEERRRLFK-EKIVH--QKFNVLLTTYEYLMNKHD 1206
W+ E WAP ++ +VY G R + + E V +K + Y + D
Sbjct: 464 STMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEILLKD 523
Query: 1207 RPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXX 1266
+ LS I W +++DE HR+KN L L ++ +H+LL+TGTP
Sbjct: 524 KAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHF 583
Query: 1267 XXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHK 1326
F+ E+F N ESN I+ LH+ L PF+LRR+K
Sbjct: 584 IMPEKFDCWEEFETAHN---ESNHKG---------------ISALHKKLEPFLLRRVKKD 625
Query: 1327 VENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGNSKGRSVH---NSVMELRNICNH 1382
VE LP K E+++R + +A+QK K + +N + S++ N VMEL+ CNH
Sbjct: 626 VEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNH 685
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
L++ + D + L +++ GKL +LD+LL +LK HRVL FS M +LD++
Sbjct: 686 ASLTRQYDHIYDDAQGR--LQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDIL 743
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
++YL +++ RLDG R +D +N S F FLLS RAGG+G+NL ADTVI
Sbjct: 744 QEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVI 803
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
IFD+DWNPQ DLQA +RAHRIGQ + V + R T +VEE++ A+ KL
Sbjct: 804 IFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKL 853
Score = 93 (37.8 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 32/132 (24%), Positives = 64/132 (48%)
Query: 724 DQWKPVSGTDS--DRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTE 781
+Q + SG+D+ D + PV++ +++ +D + + P +S ++ S +
Sbjct: 3 NQSESSSGSDAEPDEKTDEPVREEENPEGNSTSEDNDEKEKAADSPESSSDQSDDS--DD 60
Query: 782 QDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKES 841
E S D P APK + MD + RKLL +N+ + +++K++ + + +ES
Sbjct: 61 ASENSSSSEPDEP-APKKKNNNNRGMDAETRKLLENENYFRRSKRSKRQDDSPSDNSEES 119
Query: 842 VSSSEDISAKTK 853
SS +D + K
Sbjct: 120 QSSEDDWDDRRK 131
Score = 59 (25.8 bits), Expect = 7.6e-66, Sum P(3) = 7.6e-66
Identities = 26/94 (27%), Positives = 35/94 (37%)
Query: 106 DSKAGL-AENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSA 164
+S +G AE + EP P S D + S +S +S S D S
Sbjct: 6 ESSSGSDAEPDEKTDEPVREEENPEGNS-TSEDNDEKEKAADSPESSSDQSDDS-DDASE 63
Query: 165 NSQSQERQKDGKKASTKRKRG-DSSISHEPQNEN 197
NS S E + K RG D+ +NEN
Sbjct: 64 NSSSSEPDEPAPKKKNNNNRGMDAETRKLLENEN 97
Score = 46 (21.3 bits), Expect = 1.7e-64, Sum P(3) = 1.7e-64
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRK-----RGDSSISHEPQNENPQQLDSRNS 206
+ E+P T N + +E+ D ++S+ + ++S S EP P++ ++ N
Sbjct: 25 EEENPEGNSTSEDNDE-KEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKNNNNR 83
Query: 207 VVNPRKGKM 215
++ K+
Sbjct: 84 GMDAETRKL 92
Score = 43 (20.2 bits), Expect = 3.6e-64, Sum P(3) = 3.6e-64
Identities = 14/80 (17%), Positives = 26/80 (32%)
Query: 141 ASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQ 200
+SG+ E + NS S++ + K A + D S + +EN
Sbjct: 8 SSGSDAEPDEKTDEPVREEENPEGNSTSEDNDEKEKAADSPESSSDQSDDSDDASENSSS 67
Query: 201 LDSRNSVVNPRKGKMNKVDA 220
+ + +DA
Sbjct: 68 SEPDEPAPKKKNNNNRGMDA 87
Score = 43 (20.2 bits), Expect = 3.6e-64, Sum P(3) = 3.6e-64
Identities = 27/113 (23%), Positives = 50/113 (44%)
Query: 70 EALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPV 129
E K++ P +S Q DS A SSS+ D A +N ++ +R +
Sbjct: 40 EKEKAADSPESSSDQSDDSDDASENSSSSE-----PDEPAPKKKNNNNRGMD-AETRKLL 93
Query: 130 APSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR 182
+Y++ S RS + D S +S +++S+ +R+K ++ TK+
Sbjct: 94 E----NENYFRRS--KRSKRQDDSPSDNSEESQSSEDDWDDRRKP-RRTVTKK 139
Score = 40 (19.1 bits), Expect = 7.4e-64, Sum P(3) = 7.4e-64
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 1013 QKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNE 1066
+K ++E ++ + +E D + + E + + D+SD A S+E
Sbjct: 17 EKTDEPVREEENPEGNSTSE-DNDEKEKAADSPESSSDQSDDSDDASENSSSSE 69
Score = 39 (18.8 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1569 SAEDRREYLESLLRECKK 1586
S ++ ++ +ESL CKK
Sbjct: 1060 STDEMKKLVESLSEACKK 1077
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 733 (263.1 bits), Expect = 2.1e-69, Sum P(2) = 2.1e-69
Identities = 179/464 (38%), Positives = 246/464 (53%)
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
GG L YQ+ GL WL + + ILADEMGLGKTVQ I + L + + +GP+
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 756
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEER------------------RRLFK-EKIVH 1188
WE E WAP + + Y G E R +++F+ +K V
Sbjct: 757 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 816
Query: 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
KF+VLLT+YE + D+ L I+W +++DE HR+KN K L Y+ ++LLL
Sbjct: 817 IKFHVLLTSYELITI--DQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP FN+ E F + F D S + I
Sbjct: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF-------ADISKEDQ----------I 917
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNS 1364
+LH +L P +LRRLK V +P K E +VR E S Y K ++ R E L S G
Sbjct: 918 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 977
Query: 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLK 1423
S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +L ++L KL+
Sbjct: 978 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
Query: 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN + F FL
Sbjct: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
LS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ +
Sbjct: 1098 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
Score = 56 (24.8 bits), Expect = 2.1e-69, Sum P(2) = 2.1e-69
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
P SL + + +E + GK+ K+K G + E + + ++ +S S +P K K
Sbjct: 44 PVSLPKKKKPKKLKENKCKGKR---KKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKK 100
Query: 216 NKV 218
K+
Sbjct: 101 KKL 103
Score = 53 (23.7 bits), Expect = 4.4e-69, Sum P(2) = 4.4e-69
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGD 186
+ + + +S S S N + +++ KD K+ KRK+ D
Sbjct: 78 NEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 117
Score = 45 (20.9 bits), Expect = 3.0e-68, Sum P(2) = 3.0e-68
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 147 SSQSFDHESPSSLDTRSANSQSQERQKD---GKKASTKRK--RGDSSISHEPQNEN 197
SS D S D+ S +S S + GKK+ +RK R D +E +++
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQD 344
Score = 37 (18.1 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 179 STKRKRGDSSISHEPQNEN 197
S KRK+G SS E + +
Sbjct: 282 SNKRKKGSSSEEDEREESD 300
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 758 (271.9 bits), Expect = 4.9e-69, Sum P(3) = 4.9e-69
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 708 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 767
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 768 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 827
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 828 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 885
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 886 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 935
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 936 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1048
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1049 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1108
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1213
Score = 52 (23.4 bits), Expect = 4.9e-69, Sum P(3) = 4.9e-69
Identities = 25/116 (21%), Positives = 40/116 (34%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGN 252
P+NE + D + P+ K K P + +++ + S G+ F
Sbjct: 33 PENEEDPEEDL-SETETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEEEE 91
Query: 253 MSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
++ LR EG + T + + S SK EE E SSA
Sbjct: 92 VA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSA 145
Score = 52 (23.4 bits), Expect = 5.8e-68, Sum P(4) = 5.8e-68
Identities = 21/103 (20%), Positives = 37/103 (35%)
Query: 105 KDSKAGLAENEMSKIEPFTSS---RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT 161
+D + L+E E K++ R P P + + + E +L +
Sbjct: 37 EDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRS 96
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
S S +K KK K+++ S E + E DS+
Sbjct: 97 DSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 139
Score = 48 (22.0 bits), Expect = 1.5e-67, Sum P(4) = 1.5e-67
Identities = 18/72 (25%), Positives = 25/72 (34%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQET 606
+PP + E D S E LK K P D I +R++ G E
Sbjct: 28 LPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVE 87
Query: 607 AESQAFFTSASQ 618
E + S S+
Sbjct: 88 EEEEVALRSDSE 99
Score = 45 (20.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 314 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 353
Score = 39 (18.8 bits), Expect = 1.3e-66, Sum P(4) = 1.3e-66
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 790 HTDSPPAPKYTMSEKWIMDMQKRKLLVEQN--WILKQQKTKQRMSTCFNKLKESVSSSED 847
H ++ P+ +SE ++K+K + I K ++ K+ + + E V E+
Sbjct: 32 HPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEEEE 91
Query: 848 ISAKTKS 854
++ ++ S
Sbjct: 92 VALRSDS 98
Score = 38 (18.4 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 132 SGAGHDYYQAS---GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSS 188
SG G ++ + S+ D+ +P + + +++ K K+ + + D
Sbjct: 79 SGEGPEFVEEEEEVALRSDSEGSDY-TPGKKKKKKLGPKKEKKSKS-KRKEEEEEEDDDD 136
Query: 189 ISHEPQN 195
S EP++
Sbjct: 137 DSKEPKS 143
Score = 37 (18.1 bits), Expect = 4.9e-69, Sum P(3) = 4.9e-69
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 679 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 720
Score = 37 (18.1 bits), Expect = 6.1e-69, Sum P(2) = 6.1e-69
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAK 1059
E ++ ET+T + +K +P + + ++K
Sbjct: 40 EEDLSETETPKLKKKKKPKKPRDPKIPKSK 69
Score = 37 (18.1 bits), Expect = 5.8e-68, Sum P(4) = 5.8e-68
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 259 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 303
Score = 37 (18.1 bits), Expect = 1.5e-67, Sum P(4) = 1.5e-67
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQRE 976
K+++ G K K KRKE E D +E
Sbjct: 108 KKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKE 140
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 758 (271.9 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 737 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 796
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 797 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 856
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 857 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 914
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 915 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 964
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 965 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1017
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 1018 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1077
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1078 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1137
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1138 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1197
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1198 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1242
Score = 54 (24.1 bits), Expect = 2.5e-68, Sum P(4) = 2.5e-68
Identities = 36/140 (25%), Positives = 53/140 (37%)
Query: 86 GDSSTAQC-AGSSSQVAGVVKDS--KAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQAS 142
G SS A AG +G+ S AG E++M + +S PP P D +
Sbjct: 7 GRSSWANSLAGRKGMASGLGSPSPCSAGSEEDDMDAL--LNNSLPPPHPENE-EDPEEDL 63
Query: 143 GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH----EPQNENP 198
+ + + P R +RQK ++ R+ GDSS E + E
Sbjct: 64 SEAETPKLKKKKKPKK--PRDPKIPKSKRQKK-ERLLLCRQLGDSSGEGPEFVEEEEEVA 120
Query: 199 QQLDSRNSVVNPRKGKMNKV 218
+ DS S P K K K+
Sbjct: 121 LRSDSEGSDYTPGKKKKKKL 140
Score = 46 (21.3 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 38/168 (22%), Positives = 67/168 (39%)
Query: 960 KRKERIHRE-KIDRIQREKINLL----KINDVEG----YLRMVQDA--KSDRVNKLLKET 1008
K+K + R+ KI + +R+K L ++ D G ++ ++ +SD
Sbjct: 74 KKKPKKPRDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPG 133
Query: 1009 EKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKY 1068
+K +KLG K +E KS + E E ++ E A ED + ++ S E Y
Sbjct: 134 KKKKKKLGPK-KEKKSKSKRKEEEEEDEDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDY 192
Query: 1069 YLMAHSIKESVSEQPT-CLQGGKLREYQMS---GLRWLVSLYNNQLNG 1112
+ + S +P + K+ +M G +W NN G
Sbjct: 193 RTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKG 240
Score = 45 (20.9 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 343 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 382
Score = 44 (20.5 bits), Expect = 3.5e-67, Sum P(4) = 3.5e-67
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ E +L + S S +K KK K+++ S E + E+ DS+
Sbjct: 114 EEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDEDDDDSK 166
Score = 43 (20.2 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 48 LPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQK 92
Score = 41 (19.5 bits), Expect = 7.7e-68, Sum P(3) = 7.7e-68
Identities = 24/109 (22%), Positives = 42/109 (38%)
Query: 747 GMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWI 806
GM P S GS +D + N + ++EED PK +K
Sbjct: 20 GMASGLGSPSP-CSAGSEEDDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK-- 76
Query: 807 MDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
+ R + ++ K+QK K+R+ C +L +S + + + V
Sbjct: 77 -PKKPRDPKIPKS---KRQK-KERLLLC-RQLGDSSGEGPEFVEEEEEV 119
Score = 40 (19.1 bits), Expect = 9.2e-67, Sum P(4) = 9.2e-67
Identities = 25/135 (18%), Positives = 49/135 (36%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 39 DMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERLLL 98
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
R SG G ++ + + +S S T + + K KK+ +KRK
Sbjct: 99 CRQLGDSSGEGPEFVE----EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKE 154
Query: 185 GDSSISHEPQNENPQ 199
+ + ++ P+
Sbjct: 155 EEEEDEDDDDSKEPK 169
Score = 39 (18.8 bits), Expect = 2.5e-68, Sum P(4) = 2.5e-68
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
E++EED+ P + E W M+
Sbjct: 154 EEEEEDEDDDDSKEPKSSAQLLEDWGME 181
Score = 38 (18.4 bits), Expect = 3.2e-68, Sum P(4) = 3.2e-68
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
K G N KP S V ++ P ++++ G ++ S S
Sbjct: 286 KDLGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 332
Score = 38 (18.4 bits), Expect = 1.6e-67, Sum P(3) = 1.6e-67
Identities = 27/123 (21%), Positives = 40/123 (32%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV-KGAEQSNFNMV------PSGGQMEH 245
P+NE + D + P+ K K P + K Q ++ S G+
Sbjct: 53 PENEEDPEEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKERLLLCRQLGDSSGEGPE 111
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL 305
F ++ LR EG + T + + S SK EE E
Sbjct: 112 FVEEEEEVA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDEDDDDSKEPK 169
Query: 306 SSA 308
SSA
Sbjct: 170 SSA 172
Score = 37 (18.1 bits), Expect = 2.5e-68, Sum P(4) = 2.5e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 708 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 749
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 758 (271.9 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 708 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 767
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 768 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 827
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 828 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 885
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 886 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 935
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 936 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1048
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1049 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1108
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1213
Score = 50 (22.7 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 25/116 (21%), Positives = 39/116 (33%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGN 252
P+NE D + P+ K K P + +++ + S G+ F
Sbjct: 33 PENEEDPDEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEEEE 91
Query: 253 MSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
++ LR EG + T + + S SK EE E SSA
Sbjct: 92 VA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDEDDDSKEPKSSA 145
Score = 50 (22.7 bits), Expect = 9.8e-68, Sum P(4) = 9.8e-68
Identities = 21/103 (20%), Positives = 37/103 (35%)
Query: 105 KDSKAGLAENEMSKIEPFTSS---RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDT 161
+D L+E E K++ R P P + + + E +L +
Sbjct: 37 EDPDEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRS 96
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
S S +K KK K+++ S E + E + DS+
Sbjct: 97 DSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDEDDDSK 139
Score = 45 (20.9 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 314 FDDASINSYSVSDGSTSRSSRSRKKLRTAKKKKKGEEEVT 353
Score = 45 (20.9 bits), Expect = 3.3e-67, Sum P(4) = 3.3e-67
Identities = 17/72 (23%), Positives = 25/72 (34%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQET 606
+PP + + D S E LK K P D I +R++ G E
Sbjct: 28 LPPPHPENEEDPDEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKELGDSSGEGPEFVE 87
Query: 607 AESQAFFTSASQ 618
E + S S+
Sbjct: 88 EEEEVALRSDSE 99
Score = 38 (18.4 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 19/95 (20%), Positives = 36/95 (37%)
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQN 819
S GS +D + N + ++EED PK +K K+
Sbjct: 12 SAGSEEEDMDALLNNSLPPPHPENEEDPDEDLSEAETPKLKKKKK-----PKKP---RDP 63
Query: 820 WILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKS 854
I K ++ K+ + + E V E+++ ++ S
Sbjct: 64 KIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDS 98
Score = 37 (18.1 bits), Expect = 8.3e-69, Sum P(3) = 8.3e-69
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 679 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 720
Score = 37 (18.1 bits), Expect = 9.8e-68, Sum P(4) = 9.8e-68
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 259 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 303
Score = 37 (18.1 bits), Expect = 3.3e-67, Sum P(4) = 3.3e-67
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQRE 976
K+++ G K K KRKE E D +E
Sbjct: 108 KKKKKLGPKKEKKSKSKRKEEEEEEDEDDDSKE 140
Score = 37 (18.1 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 173 KDGKKASTKRKRGDSSISHEPQNENPQ 199
K KK+ +KRK + + ++ P+
Sbjct: 116 KKEKKSKSKRKEEEEEEDEDDDSKEPK 142
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 758 (271.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 715 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 774
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 775 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 834
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 835 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 892
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 893 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 942
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 943 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 996 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1055
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1056 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1115
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1220
Score = 45 (20.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 321 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 360
Score = 44 (20.5 bits), Expect = 4.1e-67, Sum P(4) = 4.1e-67
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ E +L + S S +K KK K+++ S E + E+ DS+
Sbjct: 94 EEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSK 146
Score = 43 (20.2 bits), Expect = 4.4e-68, Sum P(3) = 4.4e-68
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQN 819
S GS +D + N + ++EED PK +K + R + ++
Sbjct: 12 SAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK---PKKPRDPKIPKS 68
Query: 820 WILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
K+QK K+RM C +L +S + + + V
Sbjct: 69 ---KRQK-KERMLLC-RQLGDSSGEGPEFVEEEEEV 99
Score = 43 (20.2 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 28 LPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQK 72
Score = 40 (19.1 bits), Expect = 9.2e-68, Sum P(3) = 9.2e-68
Identities = 28/123 (22%), Positives = 40/123 (32%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV-KGAEQSNFNMV------PSGGQMEH 245
P+NE + D + P+ K K P + K Q M+ S G+
Sbjct: 33 PENEEDPEEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPE 91
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL 305
F ++ LR EG + T + + S SK EE E
Sbjct: 92 FVEEEEEVA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSKEPK 149
Query: 306 SSA 308
SSA
Sbjct: 150 SSA 152
Score = 40 (19.1 bits), Expect = 1.1e-66, Sum P(4) = 1.1e-66
Identities = 25/135 (18%), Positives = 49/135 (36%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 19 DMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERMLL 78
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
R SG G ++ + + +S S T + + K KK+ +KRK
Sbjct: 79 CRQLGDSSGEGPEFVE----EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKE 134
Query: 185 GDSSISHEPQNENPQ 199
+ + ++ P+
Sbjct: 135 EEEEDDDDDDSKEPK 149
Score = 37 (18.1 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 686 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 727
Score = 37 (18.1 bits), Expect = 4.1e-67, Sum P(4) = 4.1e-67
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 266 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 310
Score = 37 (18.1 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
E++EED P + E W M+
Sbjct: 134 EEEEEDDDDDDSKEPKSSAQLLEDWGME 161
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 758 (271.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 715 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 774
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 775 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 834
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 835 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 892
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 893 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 942
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 943 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 996 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1055
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1056 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1115
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1220
Score = 45 (20.9 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 321 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 360
Score = 44 (20.5 bits), Expect = 4.1e-67, Sum P(4) = 4.1e-67
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ E +L + S S +K KK K+++ S E + E+ DS+
Sbjct: 94 EEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSK 146
Score = 43 (20.2 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 28 LPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQK 72
Score = 39 (18.8 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 760 SDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQN 819
S GS +D + N + ++EED PK +K + R + ++
Sbjct: 12 SAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK---PKKPRDPKIPKS 68
Query: 820 WILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
K+QK K+R+ C +L +S + + + V
Sbjct: 69 ---KRQK-KERVLLC-RQLGDSSGEGPEFVEEEEEV 99
Score = 39 (18.8 bits), Expect = 1.4e-66, Sum P(4) = 1.4e-66
Identities = 25/135 (18%), Positives = 49/135 (36%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 19 DMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERVLL 78
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
R SG G ++ + + +S S T + + K KK+ +KRK
Sbjct: 79 CRQLGDSSGEGPEFVE----EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKE 134
Query: 185 GDSSISHEPQNENPQ 199
+ + ++ P+
Sbjct: 135 EEEEDDDDDDSKEPK 149
Score = 37 (18.1 bits), Expect = 2.7e-68, Sum P(3) = 2.7e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 686 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 727
Score = 37 (18.1 bits), Expect = 4.1e-67, Sum P(4) = 4.1e-67
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 266 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 310
Score = 37 (18.1 bits), Expect = 5.2e-67, Sum P(4) = 5.2e-67
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
E++EED P + E W M+
Sbjct: 134 EEEEEDDDDDDSKEPKSSAQLLEDWGME 161
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 758 (271.9 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 735 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 794
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 795 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 854
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 855 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 912
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 913 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 962
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 963 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1015
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 1016 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1075
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1076 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1135
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1136 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1195
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1196 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1240
Score = 53 (23.7 bits), Expect = 5.1e-68, Sum P(4) = 5.1e-68
Identities = 33/139 (23%), Positives = 50/139 (35%)
Query: 86 GDSSTAQC-AGSSSQVAGVVKDS--KAGLAENEMSKIEPFTSSRPPVAPSGAG---HDYY 139
G SS A AG +G+ S AG E +M + +S PP P D
Sbjct: 7 GRSSWANSLAGRKGMASGLGSPSPCSAGSEEEDMDAL--LNNSLPPPHPENEEDPEEDLS 64
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQ 199
+A T + + + P + Q +ER ++ G + E + E
Sbjct: 65 EAE-TPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFV--EEEEEVAL 121
Query: 200 QLDSRNSVVNPRKGKMNKV 218
+ DS S P K K K+
Sbjct: 122 RSDSEGSDYTPGKKKKKKL 140
Score = 45 (20.9 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 341 FDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT 380
Score = 44 (20.5 bits), Expect = 3.7e-68, Sum P(3) = 3.7e-68
Identities = 25/109 (22%), Positives = 42/109 (38%)
Query: 747 GMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWI 806
GM P S GS +D + N + ++EED PK +K
Sbjct: 20 GMASGLGSPSP-CSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK-- 76
Query: 807 MDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
+ R + ++ K+QK K+RM C +L +S + + + V
Sbjct: 77 -PKKPRDPKIPKS---KRQK-KERMLLC-RQLGDSSGEGPEFVEEEEEV 119
Score = 44 (20.5 bits), Expect = 4.5e-67, Sum P(4) = 4.5e-67
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ E +L + S S +K KK K+++ S E + E+ DS+
Sbjct: 114 EEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSK 166
Score = 43 (20.2 bits), Expect = 5.7e-67, Sum P(4) = 5.7e-67
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 48 LPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQK 92
Score = 40 (19.1 bits), Expect = 9.8e-68, Sum P(3) = 9.8e-68
Identities = 28/123 (22%), Positives = 40/123 (32%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV-KGAEQSNFNMV------PSGGQMEH 245
P+NE + D + P+ K K P + K Q M+ S G+
Sbjct: 53 PENEEDPEEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPE 111
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL 305
F ++ LR EG + T + + S SK EE E
Sbjct: 112 FVEEEEEVA--LRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSKEPK 169
Query: 306 SSA 308
SSA
Sbjct: 170 SSA 172
Score = 40 (19.1 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 25/135 (18%), Positives = 49/135 (36%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 39 DMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERMLL 98
Query: 125 SRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
R SG G ++ + + +S S T + + K KK+ +KRK
Sbjct: 99 CRQLGDSSGEGPEFVE----EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKE 154
Query: 185 GDSSISHEPQNENPQ 199
+ + ++ P+
Sbjct: 155 EEEEDDDDDDSKEPK 169
Score = 37 (18.1 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 706 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 747
Score = 37 (18.1 bits), Expect = 5.1e-68, Sum P(4) = 5.1e-68
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMD 808
E++EED P + E W M+
Sbjct: 154 EEEEEDDDDDDSKEPKSSAQLLEDWGME 181
Score = 37 (18.1 bits), Expect = 5.1e-68, Sum P(4) = 5.1e-68
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 286 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 330
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 758 (271.9 bits), Expect = 3.1e-68, Sum P(3) = 3.1e-68
Identities = 192/527 (36%), Positives = 271/527 (51%)
Query: 1082 QPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
QP L GG L YQM GL WL + + ILADEMGLGKTVQ + L + +
Sbjct: 736 QPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHS 795
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKEKIVHQ---- 1189
+GPF WE E WAP ++ + Y G + R + F++ +
Sbjct: 796 KGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKA 855
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KF+VLLT+YE + D L I W +I+DE HR+KN K L Y
Sbjct: 856 SRMKKEASVKFHVLLTSYELITI--DMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 913
Query: 1241 QSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXX 1300
H+LLLTGTP F++ E F + F D + +
Sbjct: 914 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF-------ADIAKEDQ--- 963
Query: 1301 XXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEE 1356
I +LH +L P +LRRLK V +P K E +VR E S Y K ++ R E
Sbjct: 964 -------IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1016
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEML 1415
L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +L
Sbjct: 1017 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLL 1076
Query: 1416 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1077 QKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAP 1136
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 1535
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1137 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1196
Query: 1536 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+
Sbjct: 1197 TRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK 1241
Score = 45 (20.9 bits), Expect = 3.1e-68, Sum P(3) = 3.1e-68
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 151 FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
FD S +S ++ R + + + K+K+G+ ++
Sbjct: 342 FDDASINSYSVSDGSTSRSSRSRKKLRTAKKKKKGEEEVT 381
Score = 44 (20.5 bits), Expect = 4.7e-67, Sum P(4) = 4.7e-67
Identities = 24/133 (18%), Positives = 48/133 (36%)
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAG---LAENEMSKIEPFTS 124
DM+AL ++ LP D + ++ K K + +++ K E
Sbjct: 40 DMDALLNNSLPPPHPENEDDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQKKERLLL 99
Query: 125 SRPPVAPSGAGHDYYQAS--GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR 182
R SG G ++ + RS +P + + +++ K K+ +
Sbjct: 100 CRQLGDSSGEGPEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKS-KRKEEEE 158
Query: 183 KRGDSSISHEPQN 195
+ D S EP++
Sbjct: 159 EEDDDDDSKEPKS 171
Score = 44 (20.5 bits), Expect = 2.4e-66, Sum P(5) = 2.4e-66
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 547 IPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQ 591
+PP + E D S E LK K P D I +R++
Sbjct: 49 LPPPHPENEDDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQK 93
Score = 43 (20.2 bits), Expect = 6.0e-67, Sum P(4) = 6.0e-67
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 152 DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSR 204
+ + ++L + S S +K KK K+++ S E + E DS+
Sbjct: 115 EEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSK 167
Score = 41 (19.5 bits), Expect = 8.0e-68, Sum P(3) = 8.0e-68
Identities = 27/123 (21%), Positives = 42/123 (34%)
Query: 193 PQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSV-KGAEQSNFNMV------PSGGQMEH 245
P+NE+ + D + P+ K K P + K Q ++ S G+
Sbjct: 54 PENEDDPEEDL-SEAETPKLKKKKKPKKPRDPKIPKSKRQKKERLLLCRQLGDSSGEGPE 112
Query: 246 FSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL 305
F + + + LR EG + T + + S SK EE E
Sbjct: 113 F--VEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPK 170
Query: 306 SSA 308
SSA
Sbjct: 171 SSA 173
Score = 38 (18.4 bits), Expect = 2.0e-66, Sum P(4) = 2.0e-66
Identities = 20/91 (21%), Positives = 35/91 (38%)
Query: 744 DASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSE 803
+ GM P S GS +D + N + ++E+D PK +
Sbjct: 18 ERKGMASGLGSPSP-CSAGSEEEDMDALLNNSLPPPHPENEDDPEEDLSEAETPKLKKKK 76
Query: 804 KWIMDMQKRKLLVEQNWILKQQKTKQRMSTC 834
K + R + ++ K+QK K+R+ C
Sbjct: 77 K---PKKPRDPKIPKS---KRQK-KERLLLC 100
Score = 38 (18.4 bits), Expect = 2.4e-66, Sum P(5) = 2.4e-66
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 205 NSVVNPRKGKMNKVDAPGGFSVKGAEQSNFN 235
NS+ RKG + + +P S G+E+ + +
Sbjct: 13 NSLAGERKGMASGLGSPSPCSA-GSEEEDMD 42
Score = 37 (18.1 bits), Expect = 3.1e-68, Sum P(3) = 3.1e-68
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
G KL++ K E ET TV KYE E D + H
Sbjct: 707 GKKLKKVK--LRKLERP-PETPTVDPTVKYERQPEYLDATGGTLH 748
Score = 37 (18.1 bits), Expect = 4.7e-67, Sum P(4) = 4.7e-67
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLS 306
+G N KP S V ++ P ++++ G ++ S S
Sbjct: 287 KGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSS 331
Score = 37 (18.1 bits), Expect = 2.0e-66, Sum P(4) = 2.0e-66
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQRE 976
K+++ G K K KRKE E D +E
Sbjct: 136 KKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKE 168
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 434 (157.8 bits), Expect = 7.2e-68, Sum P(3) = 7.2e-68
Identities = 115/401 (28%), Positives = 194/401 (48%)
Query: 963 ERIHREKIDRIQRE-KINLLKINDVEGYL-RMVQDAKSDRVNKLLKETEKYLQKLGSKLQ 1020
E + + +D++ ++ K ++D + K ++N+ +++++ Y + L
Sbjct: 93 EAVQAQVVDKLAKDTKSEQKSLDDELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLL 152
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
+ ++ + + + + + +D K + NE + ++
Sbjct: 153 HRSNEVANANTKDNSNSDDEEHSSKKRKTKKKSITDFFKKQ-KKNEDTTTQNGAPDDAAI 211
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+QP L+ L+ YQ+ GL WL++LY N LNGILADEMGLGKTVQ IAL+ ++ E + +
Sbjct: 212 KQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEM-DTK 270
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV---HQKFNVLLTT 1197
GPF W +E +AP + + Y G + R K K H +++T+
Sbjct: 271 GPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITS 330
Query: 1198 YEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
YE ++ D + W ++I+DEGHR+KN +C+L +LK +S+RLLLTGTP
Sbjct: 331 YEIILR--DTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNL 388
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFES----NGDNSPDXXXXXXXXXXX-IINRLH 1312
IF E F++WF+ F+S +G NS +I+ LH
Sbjct: 389 AELWSLLNFIMPDIFADFEIFNKWFD--FDSLNLGSGSNSEALNKLINDELQKNLISNLH 446
Query: 1313 QVLRPFVLRRLKHKV-ENELPEKIERLVRCEASAYQKLLMK 1352
+L+PF+LRRLK V N LP K E ++ C ++ Q+ K
Sbjct: 447 TILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYK 487
Score = 358 (131.1 bits), Expect = 7.2e-68, Sum P(3) = 7.2e-68
Identities = 82/219 (37%), Positives = 122/219 (55%)
Query: 1352 KRVEENLG-SIGNSKGRSVHNSVMELRNICNHPYL---SQLHAEEVDTLIPKHYLPPIVR 1407
K ++NL I N K + N +M+LR I + +L LH E++ L +++
Sbjct: 551 KLYKKNLQMEISNKK---LQNMMMQLRQIIDSTFLFYFPYLHPEDLT-------LETLLK 600
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GKL++L +L+P L + H+VL +S +LD++ED+ + R+DG + R
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
++KFN IFLLS RA G+G+NL ADTV++FD+DWNPQVDLQA R HRIGQ+
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQES 720
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 1566
V+V R T+E + A +K + I G F+N
Sbjct: 721 PVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNN 759
Score = 48 (22.0 bits), Expect = 2.2e-26, Sum P(4) = 2.2e-26
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 165 NSQSQERQKDGKKASTKRKRGDSSISHEPQNEN 197
NS S + + KK TK+K + +NE+
Sbjct: 166 NSNSDDEEHSSKKRKTKKKSITDFFKKQKKNED 198
Score = 42 (19.8 bits), Expect = 9.0e-26, Sum P(4) = 9.0e-26
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 158 SLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
S + +AN++ D + +S KRK SI+
Sbjct: 155 SNEVANANTKDNSNSDDEEHSSKKRKTKKKSIT 187
Score = 37 (18.1 bits), Expect = 7.2e-68, Sum P(3) = 7.2e-68
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 5 NNVELEAAKFLHKLIQDSKDEPAKLATKL 33
++ E A+ + KL +D+K E L +L
Sbjct: 90 SDTEAVQAQVVDKLAKDTKSEQKSLDDEL 118
Score = 37 (18.1 bits), Expect = 2.2e-26, Sum P(4) = 2.2e-26
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 595 GKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVEN 640
G L EM +T +S A + T+G +T P++ ++N
Sbjct: 243 GILADEMGLGKTVQSIALLAFIYEM----DTKGPFLVTAPLSTLDN 284
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 734 (263.4 bits), Expect = 8.5e-68, Sum P(3) = 8.5e-68
Identities = 227/666 (34%), Positives = 325/666 (48%)
Query: 928 SEIEAHKERLDEVFKIKRERWRGVNKYVK-EFHKRKERIHREKIDRIQREKINLLKINDV 986
SE +E E F IK W+G YV E+ E + +ID+ KI K+ +
Sbjct: 1047 SETNEIEEEEVEQFLIK---WKG-RSYVHCEWKTAAELL---EIDKRVEAKIKRFKVKKM 1099
Query: 987 EGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYE 1046
Y+ +D SD V + + + + G + K + +E E + +K E
Sbjct: 1100 SSYIEDDEDFNSDFVI-VDRVVDLITEDDGQEFVLIKWKSLGYEEVTWEPIEMIPADKVE 1158
Query: 1047 PAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLY 1106
E + D AK EK K+ +S G LREYQ G+ WL+ Y
Sbjct: 1159 LWRERQ-VIDPAK----IREKQRPEPEEWKK-MSTSKVWKNGNSLREYQFEGVDWLLYCY 1212
Query: 1107 NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRI 1166
N N ILADEMGLGKTVQ I + + + GPF W E W +
Sbjct: 1213 YNAQNCILADEMGLGKTVQTITFLSRIYDY-GIHGPFLVVVPLSTIQNWVREFETWTD-M 1270
Query: 1167 HKIVYCGPPEERRRLFKEKIVHQK--------------FNVLLTTYEYLMNKHDRPKLSK 1212
+ IVY G R L + ++ + K + L+TT+E +++ D L K
Sbjct: 1271 NAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALITTFETVVS--DVEFLKK 1328
Query: 1213 IQWHYIIIDEGHRIKNASCKLNAD-LKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXI 1271
I W +IDE HR+KN +CKL + L ++ HR+LLTGTP
Sbjct: 1329 IPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQ 1388
Query: 1272 FNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENEL 1331
F++S F + F G D + +L ++L+P +LRRLK VE L
Sbjct: 1389 FDNSATFLEQF-------GSCQTDDQ----------VQKLQEILKPMMLRRLKEDVEKSL 1431
Query: 1332 PEKIERLVRCEASAYQKLLMKRV-EENLGSI--GNSKGRSVHNSVMELRNICNHPYLSQL 1388
K E ++ + S QK + + E N + G S S+ N +MELR CNHP+L
Sbjct: 1432 GPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGTS-APSLMNVMMELRKCCNHPFLIN- 1489
Query: 1389 HAEEV---DTLI--P---KHYLP--PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL 1438
AEE D + P + L +++ GK+ ++++LLPKL+ H+VL FS M ++
Sbjct: 1490 GAEEAIMNDFRLAHPDWDEETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKV 1549
Query: 1439 LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498
LD++E++L Y + R+DG+ G R A ID+F++++S F+FLL RAGG+G+NL AA
Sbjct: 1550 LDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAA 1609
Query: 1499 DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN-- 1556
DTVIIFD+DWNPQ DLQAQAR HRIGQK+ V V R T T E ++ A KLG+
Sbjct: 1610 DTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAV 1669
Query: 1557 -QSITA 1561
QS TA
Sbjct: 1670 LQSTTA 1675
Score = 65 (27.9 bits), Expect = 8.5e-68, Sum P(3) = 8.5e-68
Identities = 32/132 (24%), Positives = 55/132 (41%)
Query: 672 SQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQH---ANSHLSSFSIRDQWKP 728
SQ ++P P+ + Q + N +F F S SG Q A + S S+ D P
Sbjct: 600 SQAQIPATSTPSTSSQQQ----NAYPEFPDFPSS--SGYQEPTVAPEAIPSPSVSDPIMP 653
Query: 729 VSGTDSDRYSLIPVKDASGMLRHT-------SQDDPKFSDGSRTIPVDNSVRNGISLTTE 781
S + +D+ L + D +L +D+PK+ TIPV+ +++ + +
Sbjct: 654 QS-SQNDQ-ELQAISDQQEILEDVPKEEPIIEEDEPKYEYSQETIPVEE-LKDEVEFKED 710
Query: 782 QDEEDKSLHTDS 793
Q L D+
Sbjct: 711 QQSTSNLLEDDT 722
Score = 48 (22.0 bits), Expect = 6.5e-66, Sum P(3) = 6.5e-66
Identities = 29/151 (19%), Positives = 63/151 (41%)
Query: 157 SSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMN 216
+ ++ S N +Q++Q+ A ++++ + + + PQQ + +P + +
Sbjct: 489 NGMENGSGNPYAQQQQQHPMYAQYQQQQQQHAQHQQNMSGYPQQ---QQQPQHPHQHQQ- 544
Query: 217 KVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEK-PLDSAN 275
P + S P+ Q +H S +S+ + Q+V + P A
Sbjct: 545 PASVPMQHHPQ-QHPSQHQTQPNQQQQQHPSGYGIGVSTAPASMEPSQSVDQSAPPSQAQ 603
Query: 276 V-SNSVPRASNSK---FPEEVEV-SASGQQQ 301
+ + S P S+ + +PE + S+SG Q+
Sbjct: 604 IPATSTPSTSSQQQNAYPEFPDFPSSSGYQE 634
Score = 47 (21.6 bits), Expect = 8.5e-68, Sum P(3) = 8.5e-68
Identities = 19/108 (17%), Positives = 42/108 (38%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
+G+G+ Y Q H + + + S ++Q+ + ++ + H
Sbjct: 493 NGSGNPYAQQQQQHPMYAQYQQQQQQHAQHQQNMSGYPQQQQQPQHPHQHQQPASVPMQH 552
Query: 192 EPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPS 239
PQ ++P Q ++ P + + P G+ + G + +M PS
Sbjct: 553 HPQ-QHPSQHQTQ-----PNQQQQQH---PSGYGI-GVSTAPASMEPS 590
Score = 47 (21.6 bits), Expect = 2.2e-64, Sum P(4) = 2.2e-64
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 131 PSGAGHDYYQASGTHRSSQSFDHESPSS---LDTRSANSQSQERQ 172
PSG G A + SQS D +P S + S S S ++Q
Sbjct: 573 PSGYGIGVSTAPASMEPSQSVDQSAPPSQAQIPATSTPSTSSQQQ 617
Score = 46 (21.3 bits), Expect = 6.5e-66, Sum P(3) = 6.5e-66
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 767 PVDNSVRNGISLTTEQDEEDKSL-HTDSP-PAPKYTMSEKWIMDMQKRKL 814
P D + G+ DE+D+ L D+P P P + EK I++M+ K+
Sbjct: 951 PTDEA---GVEGAKSDDEDDEFLMKIDTPAPDPNAMVVEK-ILNMRMGKV 996
Score = 45 (20.9 bits), Expect = 1.7e-64, Sum P(4) = 1.7e-64
Identities = 18/88 (20%), Positives = 36/88 (40%)
Query: 554 SGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFF 613
SG + ++ +E + +D+S PP+ I A ++ + A + + S +
Sbjct: 574 SGYGIGVSTAPASMEPSQSVDQSAPPSQAQIPATSTPSTSSQQQNAYPEFPDFPSSSGYQ 633
Query: 614 --TSASQQLESASTRGTLAITNPVNDVE 639
T A + + S S + + ND E
Sbjct: 634 EPTVAPEAIPSPSVSDPIMPQSSQNDQE 661
Score = 45 (20.9 bits), Expect = 2.8e-64, Sum P(4) = 2.8e-64
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 552 SSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAE 608
+ G A S ++ E L +D P + + E+ + GK+E ++ E AE
Sbjct: 952 TDEAGVEGAKSDDEDDEFLMKIDTPAPDPNAMV-VEKILNMRMGKVEKKVPETEVAE 1007
Score = 40 (19.1 bits), Expect = 4.6e-67, Sum P(3) = 4.6e-67
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 299 QQQGNSLSSANGVLASRGTWNQNRAGFPFERS-QVPRFPGNMMIETPMQQPTVSSLGANA 357
QQQ + ++A AS G +Q +S Q+P P ++ + + QP S + A
Sbjct: 368 QQQAAAAAAAAAAAASAGGHHQGPPPPTSSQSNQIPSNPNSVPVH--VNQPG-SQVHITA 424
Query: 358 FGKVHGAMPIGPSSYPTGELGSSALSPVESQ 388
K + + Y G GS A S ES+
Sbjct: 425 -DKTRTLISVYHDGY--GGAGSGA-SSTESK 451
Score = 37 (18.1 bits), Expect = 2.2e-64, Sum P(4) = 2.2e-64
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQ 301
D N+ P+ S PE VEV A QQ+
Sbjct: 751 DYENIEKEEPQVSVD--PEPVEVEA--QQE 776
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 422 (153.6 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 109/316 (34%), Positives = 158/316 (50%)
Query: 1079 VSEQPTCLQGG-KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK 1137
+ EQP L G +L +YQ+ GL WL ++ ++NGILADEMGLGKT+QVIA + YL E
Sbjct: 276 IVEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENG 335
Query: 1138 NDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKE--KIVHQKFNVLL 1195
+ WE+EI+ W P + Y G +ERRR+ K F+VLL
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLL 395
Query: 1196 TTYEYLMNKHDRPKLSKI-QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXX 1254
TTY + + + K+ ++ + Y+I DE H +KN + + A+L + R+LLTGTP
Sbjct: 396 TTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQ 455
Query: 1255 XXXXXXXXXXXXXXXXIFNSS-EDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQ 1313
F S ED F K +S+GD D I R +
Sbjct: 456 NNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQ--DEVSQFQETQ---IQRAKR 510
Query: 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL----LMKRVEENLGSIGNSKGRSV 1369
+++PFVLRRLK V LP+K+ + + S+ QK+ L+ N G + +S R+
Sbjct: 511 IMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAG 570
Query: 1370 HNSVMELRNICNHPYL 1385
+ME+R I NHP L
Sbjct: 571 IAIMMEMRRIANHPLL 586
Score = 358 (131.1 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 76/152 (50%), Positives = 101/152 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK LD LLPKLKA HRVL FS T +LD++E+YL +++ + RLDG T+ R LI
Sbjct: 652 GKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLI 711
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
FN DS F+FLLS +AGGVG+NL AADT +I D D+NP D QA+ R HR+GQ+R V
Sbjct: 712 TDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPV 770
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561
+ R + T+EE + +AE KL + + IT+
Sbjct: 771 TIYRLISESTIEEGILMAAEEKLKL-EKDITS 801
Score = 45 (20.9 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 428 RQNSVPGTAMLRTMASRDTGKSSVSQTP 455
R VPG ++ MA D+ + SQTP
Sbjct: 43 RTERVPGKKRIQVMADSDSDGND-SQTP 69
Score = 43 (20.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 976 EKINLLKINDVEGYLRMVQDAKS--DRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEM 1033
E I+LL + + + ++D KS + K + ++ Q +++Q AK + F
Sbjct: 460 ELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRR 519
Query: 1034 DETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYY 1069
+ + + K VE S Q K Y YY
Sbjct: 520 LKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYY 555
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 689 (247.6 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 161/396 (40%), Positives = 225/396 (56%)
Query: 1191 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTG 1250
++V +T+YE L+ ++ K W Y++IDE HRIKN KL+ ++ +++++RLLLTG
Sbjct: 1 WDVCVTSYEMLIK--EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 58
Query: 1251 TPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINR 1310
TP +FNS++DF WF+ GD ++ R
Sbjct: 59 TPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTN-NCLGDKK-------------LVER 104
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSK 1365
LH VLRPF+LRR+K VE LP K E L + + Y ++LMK ++ L S G
Sbjct: 105 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI-LNSAGKMD 163
Query: 1366 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
+ N +M+LR CNHPYL AE +L V GK+ +LD+LLPKLK
Sbjct: 164 KMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSGKMVVLDKLLPKLKEQ 219
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+ +N+ +S F+F+LS
Sbjct: 220 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 279
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V V RF T TVEE++
Sbjct: 280 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 339
Query: 1546 ASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
AE KL + + I G D N + + E L+ +
Sbjct: 340 ERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 375
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 442 (160.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 108/338 (31%), Positives = 172/338 (50%)
Query: 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQL 1110
N+D +++ K+ + N+ L + ++ +++ P ++ LR+YQ +GL WL+ LY N +
Sbjct: 624 NDDNNNEHKNDSDDNDDI-LTCNMDEKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNI 681
Query: 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIV 1170
NGILADEMGLGKT+Q I+L+ YL N GP WE E+ + P +
Sbjct: 682 NGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILS 741
Query: 1171 YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230
Y G ER + F++ +++Y ++ H + +W YII+DE H IKN +
Sbjct: 742 YYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDH--LVFKRKRWKYIILDEAHNIKNFN 799
Query: 1231 CKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNG 1290
K + + + LL+TGTP IF S DF +WF+ P
Sbjct: 800 TKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAI 859
Query: 1291 DNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL 1350
+ S +I+RLH V+RP++LRRLK VE E+P K E +++C+ + Q++L
Sbjct: 860 EKSK------IHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQIL 913
Query: 1351 M------KRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
K V+ L + GN G + N +++LR +CNH
Sbjct: 914 YDEFINNKNVQNTLNT-GNYIG--LMNILIQLRKVCNH 948
Score = 340 (124.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 79/211 (37%), Positives = 120/211 (56%)
Query: 1369 VHNSVMELRNICNHPYLSQL-HAEEV--DTLIPKHYLPPI---VRL-CGKLEMLDRLLPK 1421
++N+++ N +P + Q+ +A V D + + + P+ + L GKL L++LL K
Sbjct: 1720 INNNLLNYSNDKMNPIILQIKNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSK 1779
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
K ++ L F+ ++LD++E +L Y ++RLDG T R ++ KFN D FI
Sbjct: 1780 CKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFI 1838
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+ S R+G +G+NL AA+ VI +DTDWNP +D QA R HRIGQ +DV V RF TVE
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 1542 EQVRASAEHKLGVANQSITAGFFDN-NTSAE 1571
E + K + N I G F+N NT ++
Sbjct: 1899 ENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Score = 70 (29.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 29/131 (22%), Positives = 60/131 (45%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDV--EGYLRMVQDAKSDRVNKLL---KE 1007
KY+ K K + E+ R++ N+ DV + ++V + K + + L KE
Sbjct: 113 KYLSNREKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEKLVWEEKKRELQQTLNKKKE 172
Query: 1008 T--EKYLQKLGSKLQEAKSMASH--FENE---MDETQTVSVVEKYEPAVENEDESDQAKH 1060
+K++++ K+++A+ +H FEN+ M +V +V+N D+ +
Sbjct: 173 MRFKKFVKEAIKKIKDARHNNAHELFENKYVSMSSNNNSEIVNNNASSVDNGDKELKEDD 232
Query: 1061 YLESNEKYYLM 1071
+ E+ YL+
Sbjct: 233 LTDQEEEDYLL 243
Score = 62 (26.9 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 773 RNGISLTTEQDEEDKSL---HTDSPPAPKYT-MSEKWIMDM-----QKRKLLVEQNWILK 823
+N + L ++ +DK++ +T++ P Y+ + E W+ D+ +KRK E+ W K
Sbjct: 1542 KNFLDLIKKEFTKDKNIVYNYTNNVPIDYYSSVKEVWVEDICEKDNKKRKCKREKRWYKK 1601
Query: 824 QQKT 827
+KT
Sbjct: 1602 IKKT 1605
Score = 49 (22.3 bits), Expect = 6.0e-65, Sum P(4) = 6.0e-65
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 1007 ETEKYLQKLGSKLQEAKSMAS--HFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLES 1064
+ + Y K G + K S F N++ + + ++Y+ ++ E ++ K+Y E
Sbjct: 447 DNKNYYNKTGEDYKSDKENYSPTRFHNKLKKEK----YDEYDTKLKIEKREEENKNY-EK 501
Query: 1065 NEKYYLMAHSIKESVSEQ 1082
+E Y + KE ++++
Sbjct: 502 DEHEYESDNYDKEKINKK 519
Score = 48 (22.0 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 136 HDYYQASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ 194
HD Q + +F++ S + + RS N + E+ + K + +++I +
Sbjct: 1165 HDNKQCDYNKLCADTFNNINSIGNEEKRSLNVLN-EQNNNNSKDNNNNIDNNNNIDNNNN 1223
Query: 195 NENPQQLDSRNSVVN 209
+N +D+ N++ N
Sbjct: 1224 IDNNNNIDNNNNIDN 1238
Score = 45 (20.9 bits), Expect = 1.9e-65, Sum P(3) = 1.9e-65
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
PSS + S N + + D + D++ + N + D+ + N K
Sbjct: 576 PSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDNNDDNNDDNNDDNNNEHKNDS 635
Query: 216 NKVD 219
+ D
Sbjct: 636 DDND 639
Score = 43 (20.2 bits), Expect = 6.0e-65, Sum P(4) = 6.0e-65
Identities = 36/200 (18%), Positives = 77/200 (38%)
Query: 8 ELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGL 67
E+ KF+ + I+ KD A +L+ +++ S +S ++++ +V NG
Sbjct: 172 EMRFKKFVKEAIKKIKDARHNNAHELFEN-KYVSMSSNNNS---EIVNNNASSV--DNG- 224
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGV-VKDSKAGLAENEMSK-IEPFTSS 125
D E + + D + S ++ + + D +A L E+ K + F S
Sbjct: 225 DKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEINMLDDEANLPIEELLKRMYGFKSG 284
Query: 126 RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSL--DTRSANSQSQERQKDGKKASTKRK 183
+ D +S + + +S+ D + + + + D + K
Sbjct: 285 EDYINFM-ENEDDANEENVIETSHNDEKSGDNSIGEDDNNNDEKGGDNNIDEDDNNNDEK 343
Query: 184 RGDSSISHEPQNENPQQLDS 203
GD+SI + N + + D+
Sbjct: 344 SGDNSIGEDDNNNDHKSGDN 363
Score = 43 (20.2 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 613 FTSASQQLESASTRGTLAITNPVNDVENGHLF 644
+ S ++ L GTL + D+ N H++
Sbjct: 1415 YKSYNEYLYKMKEEGTLTNQQSLGDINNKHIY 1446
Score = 43 (20.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1312 HQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEE 1356
H L+ ++ R K K++ E EK +L S+Y + K++E+
Sbjct: 109 HSCLK-YLSNREKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEK 153
Score = 43 (20.2 bits), Expect = 2.0e-24, Sum P(5) = 2.0e-24
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1323 LKHKVENELPEKIERLVRCEASAYQK 1348
LK+ +EN+ E E + R S+ QK
Sbjct: 525 LKNDIENDSDETSEHIKRDSRSSCQK 550
Score = 42 (19.8 bits), Expect = 2.0e-24, Sum P(5) = 2.0e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1346 YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRN 1378
Y KL N+ SIGN + RS+ N + E N
Sbjct: 1172 YNKLCADTFN-NINSIGNEEKRSL-NVLNEQNN 1202
Score = 42 (19.8 bits), Expect = 3.8e-23, Sum P(4) = 3.8e-23
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 993 VQD-AKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
V+D + D + K +++ +K+ + + EN D VEKY VE
Sbjct: 1579 VEDICEKDNKKRKCKREKRWYKKIKKTNNPPEDSEVYRENSSD-------VEKYNCDVEK 1631
Query: 1052 EDESDQAK 1059
++ D+ K
Sbjct: 1632 DNCDDEEK 1639
Score = 41 (19.5 bits), Expect = 4.1e-64, Sum P(4) = 4.1e-64
Identities = 25/109 (22%), Positives = 47/109 (43%)
Query: 935 ERLDEVFKIKRERWRGV-NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMV 993
E D++ IK + + NK ++K E +K + N LK + Y +
Sbjct: 432 ETKDDI--IKNSSYEHIDNK--NYYNKTGEDYKSDKENYSPTRFHNKLKKEKYDEYDTKL 487
Query: 994 QDAKSDRVNKLLK------ETEKYLQKLGSKLQEAKSMASHFENEMDET 1036
+ K + NK + E++ Y ++ +K +E + + EN+ DET
Sbjct: 488 KIEKREEENKNYEKDEHEYESDNYDKEKINKKKELILLKNDIENDSDET 536
Score = 40 (19.1 bits), Expect = 2.2e-63, Sum P(4) = 2.2e-63
Identities = 26/122 (21%), Positives = 54/122 (44%)
Query: 975 REKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMD 1034
REK+ + K + E L++ S ++ K+ EK + + K +E + + + EM
Sbjct: 118 REKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEKLVWE--EKKRELQQTLNK-KKEMR 174
Query: 1035 ETQTVS-VVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG--KL 1091
+ V ++K + A N H L N+ + +++ E V+ + + G +L
Sbjct: 175 FKKFVKEAIKKIKDARHNN------AHELFENKYVSMSSNNNSEIVNNNASSVDNGDKEL 228
Query: 1092 RE 1093
+E
Sbjct: 229 KE 230
Score = 38 (18.4 bits), Expect = 3.3e-35, Sum P(4) = 3.3e-35
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 1577 LESLLRECKKE 1587
LE LL +CK+E
Sbjct: 1773 LEKLLSKCKRE 1783
Score = 37 (18.1 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 463 KEQQLKQLRAQCLVFLAFRNGLVPKK 488
K++ K L CL +L+ R + KK
Sbjct: 100 KKKHFKVLSHSCLKYLSNREKMKIKK 125
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 442 (160.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 108/338 (31%), Positives = 172/338 (50%)
Query: 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQL 1110
N+D +++ K+ + N+ L + ++ +++ P ++ LR+YQ +GL WL+ LY N +
Sbjct: 624 NDDNNNEHKNDSDDNDDI-LTCNMDEKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNI 681
Query: 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIV 1170
NGILADEMGLGKT+Q I+L+ YL N GP WE E+ + P +
Sbjct: 682 NGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILS 741
Query: 1171 YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230
Y G ER + F++ +++Y ++ H + +W YII+DE H IKN +
Sbjct: 742 YYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDH--LVFKRKRWKYIILDEAHNIKNFN 799
Query: 1231 CKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNG 1290
K + + + LL+TGTP IF S DF +WF+ P
Sbjct: 800 TKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAI 859
Query: 1291 DNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL 1350
+ S +I+RLH V+RP++LRRLK VE E+P K E +++C+ + Q++L
Sbjct: 860 EKSK------IHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQIL 913
Query: 1351 M------KRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
K V+ L + GN G + N +++LR +CNH
Sbjct: 914 YDEFINNKNVQNTLNT-GNYIG--LMNILIQLRKVCNH 948
Score = 340 (124.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 79/211 (37%), Positives = 120/211 (56%)
Query: 1369 VHNSVMELRNICNHPYLSQL-HAEEV--DTLIPKHYLPPI---VRL-CGKLEMLDRLLPK 1421
++N+++ N +P + Q+ +A V D + + + P+ + L GKL L++LL K
Sbjct: 1720 INNNLLNYSNDKMNPIILQIKNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSK 1779
Query: 1422 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
K ++ L F+ ++LD++E +L Y ++RLDG T R ++ KFN D FI
Sbjct: 1780 CKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFI 1838
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+ S R+G +G+NL AA+ VI +DTDWNP +D QA R HRIGQ +DV V RF TVE
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 1542 EQVRASAEHKLGVANQSITAGFFDN-NTSAE 1571
E + K + N I G F+N NT ++
Sbjct: 1899 ENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Score = 70 (29.7 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 29/131 (22%), Positives = 60/131 (45%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDV--EGYLRMVQDAKSDRVNKLL---KE 1007
KY+ K K + E+ R++ N+ DV + ++V + K + + L KE
Sbjct: 113 KYLSNREKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEKLVWEEKKRELQQTLNKKKE 172
Query: 1008 T--EKYLQKLGSKLQEAKSMASH--FENE---MDETQTVSVVEKYEPAVENEDESDQAKH 1060
+K++++ K+++A+ +H FEN+ M +V +V+N D+ +
Sbjct: 173 MRFKKFVKEAIKKIKDARHNNAHELFENKYVSMSSNNNSEIVNNNASSVDNGDKELKEDD 232
Query: 1061 YLESNEKYYLM 1071
+ E+ YL+
Sbjct: 233 LTDQEEEDYLL 243
Score = 62 (26.9 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 773 RNGISLTTEQDEEDKSL---HTDSPPAPKYT-MSEKWIMDM-----QKRKLLVEQNWILK 823
+N + L ++ +DK++ +T++ P Y+ + E W+ D+ +KRK E+ W K
Sbjct: 1542 KNFLDLIKKEFTKDKNIVYNYTNNVPIDYYSSVKEVWVEDICEKDNKKRKCKREKRWYKK 1601
Query: 824 QQKT 827
+KT
Sbjct: 1602 IKKT 1605
Score = 49 (22.3 bits), Expect = 6.0e-65, Sum P(4) = 6.0e-65
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 1007 ETEKYLQKLGSKLQEAKSMAS--HFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLES 1064
+ + Y K G + K S F N++ + + ++Y+ ++ E ++ K+Y E
Sbjct: 447 DNKNYYNKTGEDYKSDKENYSPTRFHNKLKKEK----YDEYDTKLKIEKREEENKNY-EK 501
Query: 1065 NEKYYLMAHSIKESVSEQ 1082
+E Y + KE ++++
Sbjct: 502 DEHEYESDNYDKEKINKK 519
Score = 48 (22.0 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 136 HDYYQASGTHRSSQSFDH-ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQ 194
HD Q + +F++ S + + RS N + E+ + K + +++I +
Sbjct: 1165 HDNKQCDYNKLCADTFNNINSIGNEEKRSLNVLN-EQNNNNSKDNNNNIDNNNNIDNNNN 1223
Query: 195 NENPQQLDSRNSVVN 209
+N +D+ N++ N
Sbjct: 1224 IDNNNNIDNNNNIDN 1238
Score = 45 (20.9 bits), Expect = 1.9e-65, Sum P(3) = 1.9e-65
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
PSS + S N + + D + D++ + N + D+ + N K
Sbjct: 576 PSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDNNDDNNDDNNDDNNNEHKNDS 635
Query: 216 NKVD 219
+ D
Sbjct: 636 DDND 639
Score = 43 (20.2 bits), Expect = 6.0e-65, Sum P(4) = 6.0e-65
Identities = 36/200 (18%), Positives = 77/200 (38%)
Query: 8 ELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGL 67
E+ KF+ + I+ KD A +L+ +++ S +S ++++ +V NG
Sbjct: 172 EMRFKKFVKEAIKKIKDARHNNAHELFEN-KYVSMSSNNNS---EIVNNNASSV--DNG- 224
Query: 68 DMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGV-VKDSKAGLAENEMSK-IEPFTSS 125
D E + + D + S ++ + + D +A L E+ K + F S
Sbjct: 225 DKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEINMLDDEANLPIEELLKRMYGFKSG 284
Query: 126 RPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSL--DTRSANSQSQERQKDGKKASTKRK 183
+ D +S + + +S+ D + + + + D + K
Sbjct: 285 EDYINFM-ENEDDANEENVIETSHNDEKSGDNSIGEDDNNNDEKGGDNNIDEDDNNNDEK 343
Query: 184 RGDSSISHEPQNENPQQLDS 203
GD+SI + N + + D+
Sbjct: 344 SGDNSIGEDDNNNDHKSGDN 363
Score = 43 (20.2 bits), Expect = 3.5e-25, Sum P(4) = 3.5e-25
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 613 FTSASQQLESASTRGTLAITNPVNDVENGHLF 644
+ S ++ L GTL + D+ N H++
Sbjct: 1415 YKSYNEYLYKMKEEGTLTNQQSLGDINNKHIY 1446
Score = 43 (20.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1312 HQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEE 1356
H L+ ++ R K K++ E EK +L S+Y + K++E+
Sbjct: 109 HSCLK-YLSNREKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEK 153
Score = 43 (20.2 bits), Expect = 2.0e-24, Sum P(5) = 2.0e-24
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1323 LKHKVENELPEKIERLVRCEASAYQK 1348
LK+ +EN+ E E + R S+ QK
Sbjct: 525 LKNDIENDSDETSEHIKRDSRSSCQK 550
Score = 42 (19.8 bits), Expect = 2.0e-24, Sum P(5) = 2.0e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1346 YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRN 1378
Y KL N+ SIGN + RS+ N + E N
Sbjct: 1172 YNKLCADTFN-NINSIGNEEKRSL-NVLNEQNN 1202
Score = 42 (19.8 bits), Expect = 3.8e-23, Sum P(4) = 3.8e-23
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 993 VQD-AKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
V+D + D + K +++ +K+ + + EN D VEKY VE
Sbjct: 1579 VEDICEKDNKKRKCKREKRWYKKIKKTNNPPEDSEVYRENSSD-------VEKYNCDVEK 1631
Query: 1052 EDESDQAK 1059
++ D+ K
Sbjct: 1632 DNCDDEEK 1639
Score = 41 (19.5 bits), Expect = 4.1e-64, Sum P(4) = 4.1e-64
Identities = 25/109 (22%), Positives = 47/109 (43%)
Query: 935 ERLDEVFKIKRERWRGV-NKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMV 993
E D++ IK + + NK ++K E +K + N LK + Y +
Sbjct: 432 ETKDDI--IKNSSYEHIDNK--NYYNKTGEDYKSDKENYSPTRFHNKLKKEKYDEYDTKL 487
Query: 994 QDAKSDRVNKLLK------ETEKYLQKLGSKLQEAKSMASHFENEMDET 1036
+ K + NK + E++ Y ++ +K +E + + EN+ DET
Sbjct: 488 KIEKREEENKNYEKDEHEYESDNYDKEKINKKKELILLKNDIENDSDET 536
Score = 40 (19.1 bits), Expect = 2.2e-63, Sum P(4) = 2.2e-63
Identities = 26/122 (21%), Positives = 54/122 (44%)
Query: 975 REKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMD 1034
REK+ + K + E L++ S ++ K+ EK + + K +E + + + EM
Sbjct: 118 REKMKIKKQEEEEKRLKLYSKNISSYMDVFWKKIEKLVWE--EKKRELQQTLNK-KKEMR 174
Query: 1035 ETQTVS-VVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG--KL 1091
+ V ++K + A N H L N+ + +++ E V+ + + G +L
Sbjct: 175 FKKFVKEAIKKIKDARHNN------AHELFENKYVSMSSNNNSEIVNNNASSVDNGDKEL 228
Query: 1092 RE 1093
+E
Sbjct: 229 KE 230
Score = 38 (18.4 bits), Expect = 3.3e-35, Sum P(4) = 3.3e-35
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 1577 LESLLRECKKE 1587
LE LL +CK+E
Sbjct: 1773 LEKLLSKCKRE 1783
Score = 37 (18.1 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 463 KEQQLKQLRAQCLVFLAFRNGLVPKK 488
K++ K L CL +L+ R + KK
Sbjct: 100 KKKHFKVLSHSCLKYLSNREKMKIKK 125
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 734 (263.4 bits), Expect = 4.1e-66, Sum P(2) = 4.1e-66
Identities = 189/518 (36%), Positives = 269/518 (51%)
Query: 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXX 1150
LREYQ+ G+ WL+ + N N ILADEMGLGKT+Q I + Y + K GPF
Sbjct: 1012 LREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1070
Query: 1151 XXXGWESEINFWAPRIHKIVYCGPPEERRRL------FKE---KIVH--QKFNVLLTTYE 1199
WE E W ++ +VY G R+ + +++ +I+ KF+ ++TT+E
Sbjct: 1071 TIPNWEREFRTWT-ELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIKGAYKFHAVITTFE 1129
Query: 1200 YLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXX 1259
++ D P+L + W +IIDE HR+KN +CKL LK H++LLTGTP
Sbjct: 1130 MILT--DCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEE 1187
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXX--IINRLHQVLRP 1317
F S F Q F GD + ++ RL + +
Sbjct: 1188 LFSLLNFLEPDRFPSESTFMQEF-------GDLKTEEQVQKLQGILKPMMLRRLKEDVEK 1240
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKR-VEENLGSIGNSKGRSVHNSVMEL 1376
+ + + +E EL ++ R L K G G S ++ N++MEL
Sbjct: 1241 NLAPKEETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMEL 1300
Query: 1377 RNICNHPYL-----SQLHAE--EVDTLI-PKHYLPPIVRLCGKLEMLDRLLPKLKATDHR 1428
R CNHPYL ++ E E L P+ +L +++ GKL ++D+LLPKLKA HR
Sbjct: 1301 RKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKLVLIDKLLPKLKAGGHR 1360
Query: 1429 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488
VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+FLL RA
Sbjct: 1361 VLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRA 1420
Query: 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548
GG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R T + E ++ A
Sbjct: 1421 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKA 1480
Query: 1549 EHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 1583
KLG+ QS++ N + ++ +E LLR+
Sbjct: 1481 SLKLGLDKAVLQSMSGRENAANGVQQLSKKEIEDLLRK 1518
Score = 56 (24.8 bits), Expect = 1.1e-65, Sum P(3) = 1.1e-65
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNP 210
P++ D + S+ + ++K KKA + ++IS E E ++ +S++ P
Sbjct: 634 PANCDLQQKESELKPKKKKKKKAKVSEGQECNNISSEAGGEVTALMNEGDSLITP 688
Score = 48 (22.0 bits), Expect = 7.3e-65, Sum P(3) = 7.3e-65
Identities = 33/133 (24%), Positives = 45/133 (33%)
Query: 344 PMQQ--PTVSSL--G-ANAFGKVHGAMP-IGPSSYPTGELGSSALSPVESQLFSTNRGDE 397
P QQ P SS G A G H P IG Y + + +P F E
Sbjct: 158 PFQQQPPQASSHQHGPAGPQGHAHQMGPFIGRGDYAI-QGHNQTQTPPRMNHFPQGLPQE 216
Query: 398 TSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSV-SQTPV 456
+ L + ++ G S Q +Q+ P L SV S P
Sbjct: 217 ANHFLGHVGMTQNPGMSGP--PIRHLAQPSQQHQQPNQQFLHRPGQGPVHPDSVASHNPQ 274
Query: 457 FSGMPFKEQQLKQ 469
F P ++QQ +Q
Sbjct: 275 FPQSPSRQQQQQQ 287
Score = 44 (20.5 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 417 LSDANRAVQV-GRQNSVPGTAMLRTMASRDT---GKSSVSQTPVFSGMPFKEQQLKQL 470
LS +RA GR ++ PG +D + + Q +PF++QQL+Q+
Sbjct: 508 LSPNHRATAAQGRSSTTPGGNHTEPPGPQDQRLHAQQAQCQQLQKPPLPFQQQQLQQV 565
Score = 43 (20.2 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 366 PIGPSSYPT--GELGSSALSPVESQLFST 392
P GP YPT G+ G P+ +T
Sbjct: 364 PAGPQRYPTPGGQQGPLHQQPIHVNQINT 392
Score = 42 (19.8 bits), Expect = 4.1e-66, Sum P(2) = 4.1e-66
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS--VVNPRKG 213
P S SA E KK + KRKR + S++ + + PQ + + V R
Sbjct: 742 PKSSKKPSAKKSDSESGNSTKKEA-KRKR-EPSVTSDVEKTPPQSPEEEDDDGVQKRRSS 799
Query: 214 KMNK 217
+ K
Sbjct: 800 RQVK 803
Score = 42 (19.8 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 34/126 (26%), Positives = 49/126 (38%)
Query: 260 KQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWN 319
+Q Q +P +SV + N +FP+ S S QQQ V+ R +
Sbjct: 248 QQPNQQFLHRPGQGPVHPDSVA-SHNPQFPQ----SPSRQQQ-----QQQQVMGGRP--H 295
Query: 320 QNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGS 379
QN GF QVP N + + Q P SS G N + + P+ T S
Sbjct: 296 QNM-GFNMHNQQVP---SNT-VNSSGQYPPYSSYG-NLNQGLANTSGMSPNLSLTTSSNS 349
Query: 380 SALSPV 385
+ +PV
Sbjct: 350 NPNAPV 355
Score = 41 (19.5 bits), Expect = 2.1e-63, Sum P(4) = 2.1e-63
Identities = 35/161 (21%), Positives = 58/161 (36%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQN 321
+G N T+ P + +P+ +N F V ++ Q G S + Q
Sbjct: 195 QGHNQTQTPPRMNHFPQGLPQEANH-FLGHVGMT---QNPGMSGPPIRHLAQPSQQHQQP 250
Query: 322 RAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMP---IGPSSY----PT 374
F Q P P ++ P Q P S +V G P +G + + P+
Sbjct: 251 NQQFLHRPGQGPVHPDSVASHNP-QFPQSPSRQQQQQQQVMGGRPHQNMGFNMHNQQVPS 309
Query: 375 GELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSN 415
+ SS P S + N+G ++ +S L +SN
Sbjct: 310 NTVNSSGQYPPYSSYGNLNQGLANTSGMSPNLSLTTSSNSN 350
Score = 38 (18.4 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 24/106 (22%), Positives = 38/106 (35%)
Query: 105 KDSKAGLAENEMSKI-EPFTSSRP--PVAPSGAGHDYYQASGTHRSS-QSFDHESPSSLD 160
K SK E E + EP T P P P + T +S S D
Sbjct: 695 KKSKKKPKEKEPKEPKEPKTPKTPKTPKTPKEPKEPKEKKVKTATPKPKSSKKPSAKKSD 754
Query: 161 TRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNS 206
+ S NS +E ++ K+ + + + P+ E+ + R S
Sbjct: 755 SESGNSTKKEAKR--KREPSVTSDVEKTPPQSPEEEDDDGVQKRRS 798
Score = 37 (18.1 bits), Expect = 1.1e-65, Sum P(3) = 1.1e-65
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 658 KPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQ 698
KP + +S +G ++ E R+ P+ T E P +
Sbjct: 747 KPSAKKSDSESGNSTKKEAKRKREPSVTSDVEKTPPQSPEE 787
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 438 (159.2 bits), Expect = 9.5e-66, Sum P(4) = 9.5e-66
Identities = 126/386 (32%), Positives = 185/386 (47%)
Query: 1081 EQPTCL-QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
EQP+ L Q +L+ YQ GL WL L+ + LNGILADEMGLGKT+Q IA + ++ + + D
Sbjct: 422 EQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHIYQ-EGD 480
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVY-CGPPEERRRL---FKEKIVHQKFNVLL 1195
RGP W E+N W P ++ + Y G E+R+ L ++V FNV++
Sbjct: 481 RGPHLIVVPASTLDNWIREVNLWCPELNVLFYYVGSQEDRKHLRADISNRVVD--FNVIV 538
Query: 1196 TTYEY-LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXX 1254
TTY + + DR K++ +Y I DEGH +KN S L + HRLLLTGTP
Sbjct: 539 TTYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQ 598
Query: 1255 XXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQV 1314
+F+SS S+ + F S + + I Q+
Sbjct: 599 NNLLELMSLLNFVMPHMFSSST--SE-IRRMFSSKAKTAEEQSTYEKER----IAHAKQI 651
Query: 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI--GNSKGRSVHNS 1372
++PF+LRR+K +V +LP K + + C S Q+ L + L GN K + N+
Sbjct: 652 IKPFILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKLKKTMKGNEKNSDMGNA 711
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH----R 1428
+M+LR + NHP L H +HY KL+ + +L+ LK H
Sbjct: 712 MMQLRKMANHPLL---H---------RHYYT-----ADKLKTMSKLM--LKEPTHCDANP 752
Query: 1429 VLFFSTMTRLLDVMEDYLTFKQYRYL 1454
L F MT + D E +L KQY ++
Sbjct: 753 DLIFEDMTVMTD-FELHLLCKQYSHV 777
Score = 325 (119.5 bits), Expect = 9.5e-66, Sum P(4) = 9.5e-66
Identities = 70/152 (46%), Positives = 98/152 (64%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L+RLL LK RV+ FS T +LD++E +L Q+RY+RLDG T DR LI
Sbjct: 791 GKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLI 850
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ R+V
Sbjct: 851 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREV 909
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561
V++ + T+EE + + KL + Q +TA
Sbjct: 910 KVIKLISKGTIEESMLKMNQQKLKL-EQDMTA 940
Score = 48 (22.0 bits), Expect = 9.5e-66, Sum P(4) = 9.5e-66
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 810 QKRKLL-VEQNWILKQQKTKQRM-STCFNKLKESVSSSEDISA 850
QKRK EQN + K+ K K + ST K V SED SA
Sbjct: 260 QKRKFSGKEQNCLRKKHKAKANVWST-----KTEVQDSEDESA 297
Score = 48 (22.0 bits), Expect = 9.5e-66, Sum P(4) = 9.5e-66
Identities = 27/119 (22%), Positives = 45/119 (37%)
Query: 561 DSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQL 620
DS E+ K M K P AD+ H E + +++ E Q + Q F +
Sbjct: 148 DSHINGKESDKHMTKK-PKADY--HGPEALDGSKSEIQWERQEMLVEKLQNTFPG----M 200
Query: 621 ESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRR 679
+ R L N V L R G+ P SE+++WT + + + ++
Sbjct: 201 DKEELRDVLREHNWVFHEAREAL---RVFAEDNDGVGFPSPSEVSNWTEVSANSRSDKK 256
Score = 40 (19.1 bits), Expect = 1.0e-64, Sum P(3) = 1.0e-64
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 807 MDMQK-RKLLVEQNWILKQQKTKQRMSTCFNK-----LKESVSSSEDISAKTKS 854
MD ++ R +L E NW+ + + R+ N VS+ ++SA ++S
Sbjct: 200 MDKEELRDVLREHNWVFHEAREALRVFAEDNDGVGFPSPSEVSNWTEVSANSRS 253
Score = 38 (18.4 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 601 MQSQETAESQAFFTSASQQLESAST 625
M S T+E + F+S ++ E ST
Sbjct: 615 MFSSSTSEIRRMFSSKAKTAEEQST 639
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 696 (250.1 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 152/351 (43%), Positives = 214/351 (60%)
Query: 1206 DRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXX 1265
++ L + W YIIIDE HRIKN + L+ ++ + +++RLL+TGTP
Sbjct: 307 EKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLN 366
Query: 1266 XXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKH 1325
+F+S+E F +WF + +G+N ++ +LH+VLRPF+LRRLK
Sbjct: 367 FLLPEVFSSAETFDEWF----QISGENDQQE----------VVQQLHKVLRPFLLRRLKS 412
Query: 1326 KVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI-GNSKGRSVHNSVMELRNICNHP 1383
VE LP K E +++ S QK K + +++L + G + + + N M+LR CNHP
Sbjct: 413 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHP 472
Query: 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443
YL Q AE +L V GK+ +LD+LLPKLK D RVL FS MTRLLD++E
Sbjct: 473 YLFQ-GAEPGPPYTTGDHL---VTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILE 528
Query: 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503
DYL ++ Y+Y R+DG+T G +R A I+ +N+ S F+FLLS RAGG+G+NL AD VI+
Sbjct: 529 DYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVIL 588
Query: 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554
+D+DWNPQVDLQAQ RAHRIGQK++V V RF T +E +V A KL +
Sbjct: 589 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLAL 639
Score = 563 (203.2 bits), Expect = 3.7e-49, Sum P(2) = 3.7e-49
Identities = 135/423 (31%), Positives = 226/423 (53%)
Query: 968 EKIDRIQREKINLLKINDVEGY-LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMA 1026
EK + +REK L ++ ++ ++ + D+++ ++ + K ++ LQ+ + A
Sbjct: 77 EKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKGK--GRIKYLLQQTELFA 134
Query: 1027 SHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCL 1086
+++ +Q + E+E D+ L+ E + + + + QP C+
Sbjct: 135 HFAKSDPSPSQKKGKGRGRHSSKLTEEEEDE--ECLKEEEGGIVGSGGTR--LLTQPACI 190
Query: 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXX 1146
QG KLR+YQ++GL WL+ LY N +NGILADEMGLGKT+Q I+L+ YL E + GP
Sbjct: 191 QG-KLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVV 249
Query: 1147 XXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD 1206
W +EI + P + + + G PEERR + +E +V KF++ +T++E + +
Sbjct: 250 APKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK--E 307
Query: 1207 RPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXX 1266
+ L + W YIIIDE HRIKN + L+ ++ + +++RLL+TGTP
Sbjct: 308 KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNF 367
Query: 1267 XXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHK 1326
+F+S+E F +WF + +G+N ++ +LH+VLRPF+LRRLK
Sbjct: 368 LLPEVFSSAETFDEWF----QISGENDQQE----------VVQQLHKVLRPFLLRRLKSD 413
Query: 1327 VENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI-GNSKGRSVHNSVMELRNICNHPY 1384
VE LP K E +++ S QK K + +++L + G + + + N M+LR CNHPY
Sbjct: 414 VEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPY 473
Query: 1385 LSQ 1387
L Q
Sbjct: 474 LFQ 476
Score = 44 (20.5 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 17/86 (19%), Positives = 37/86 (43%)
Query: 982 KINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSV 1041
+++ E Y ++ +D+ N ++E + L+ + + + E + + + V V
Sbjct: 8 EVSSDEAYSSEEEEQVNDQAN--VEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPV 65
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEK 1067
+ E EDE D+ K + EK
Sbjct: 66 EDDAE-----EDEEDEEKAEISKREK 86
Score = 41 (19.5 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 938 DEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKIN-LLKINDVEGYLRMVQDA 996
DEV ++ + K ++E+ +++ +++++KI +L + M
Sbjct: 60 DEVVPVEDDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKG 119
Query: 997 KSDRVNKLLKETEKY 1011
K R+ LL++TE +
Sbjct: 120 KG-RIKYLLQQTELF 133
Score = 39 (18.8 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 17/86 (19%), Positives = 37/86 (43%)
Query: 41 KSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQV 100
++S +E S S E V +Q ++ + + + ++GS D + + S +V
Sbjct: 3 RASKREVSSDEAYSSEEEEQVNDQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEV 62
Query: 101 AGVVKDSKAGLAENEMSKIEPFTSSR 126
V D++ + E ++I +R
Sbjct: 63 VPVEDDAEEDEEDEEKAEISKREKAR 88
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 664 (238.8 bits), Expect = 2.7e-64, Sum P(2) = 2.7e-64
Identities = 173/485 (35%), Positives = 253/485 (52%)
Query: 1078 SVSEQPTCLQGGK---LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + G + LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 462 ALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 520
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ----- 1189
GPF W+ EI WAP+++ +VY G R + + +H
Sbjct: 521 HEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRL 580
Query: 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 1249
KFN+LLTTYE L+ D+ L + W +I +DE HR+KN L ++ L+
Sbjct: 581 KFNILLTTYEILLK--DKSFLGGLNWAFIGVDEAHRLKNDDSLL----------YKTLID 628
Query: 1250 GTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIIN 1309
F E FS W + FE +
Sbjct: 629 LVTIDSDTAPSCTIPQELWSLHFIMPEKFSSW--EDFEEEHGKGREYGYASLHKELEPF- 685
Query: 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL--GSIGNSKGR 1367
L +V + V + L KVE L ++ L + Y K ++ R + L GS G++ G
Sbjct: 686 LLRRVKKD-VEKSLPAKVEQILRMEMSALQK----QYYKWILTRNYKALSKGSKGSTSG- 739
Query: 1368 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 1427
N +MEL+ CNH YL + ++ + + L ++R GKL +LD+LL +L+ +
Sbjct: 740 -FLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGN 797
Query: 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487
RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS R
Sbjct: 798 RVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTR 857
Query: 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547
AGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE +
Sbjct: 858 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILER 917
Query: 1548 AEHKL 1552
A+ K+
Sbjct: 918 AKKKM 922
Score = 89 (36.4 bits), Expect = 2.7e-64, Sum P(2) = 2.7e-64
Identities = 38/141 (26%), Positives = 60/141 (42%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS ++
Sbjct: 2 NGHSDEESVRNSSGESSRSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--ESGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+G +E D + + P PK SE W L V+++ +LK+Q+ +Q+ ++
Sbjct: 58 SGSQSESESDTSREKKQVQAKP-PKADGSEFW--KSSPSILAVQRSAVLKKQQQQQKAAS 114
Query: 834 CFNKLKESVSSSEDISAKTKS 854
+ +E SSSED SA S
Sbjct: 115 SDSGSEEDSSSSED-SADDSS 134
Score = 82 (33.9 bits), Expect = 1.5e-63, Sum P(2) = 1.5e-63
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G + S SGS G SS + GSSSQ DS++G S+
Sbjct: 8 ESVRNSSGESSRSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSESGSESGSQSE 63
Query: 119 IEPFTS-SRPPVA---PSGAGHDYYQAS----GTHRSS---QSFDHESPSSLDTRSA-NS 166
E TS + V P G +++++S RS+ + + +S D+ S +S
Sbjct: 64 SESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDS 123
Query: 167 QSQERQKDGKKASTKRKR 184
S E D + TK+K+
Sbjct: 124 SSSEDSADDSSSETKKKK 141
Score = 74 (31.1 bits), Expect = 1.0e-62, Sum P(2) = 1.0e-62
Identities = 48/213 (22%), Positives = 85/213 (39%)
Query: 87 DSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY-QASGTH 145
DS + + + SS A D + + + K E + S + SG G D + G
Sbjct: 116 DSGSEEDSSSSEDSA----DDSSSETKKKKHKDEDWQMSGSG-SVSGTGSDSESEEDGDK 170
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG-DSSISHEPQNENPQQLDSR 204
S + + + +S S+ + K GKK++ ++KR DSS E +E+ + SR
Sbjct: 171 SSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEEEDDDEDYDKRGSR 230
Query: 205 NSV---VNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
V+ ++ + K D+ V G + VP + E F ++ M S R+ +
Sbjct: 231 RQATVNVSYKEAEETKTDSDDLLEVCGED------VPQTEEDE-FETIEKFMDS--RIGR 281
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
+G + + P A K E E+
Sbjct: 282 KGATGASTTIYAVEADGD-PNAGFEKSKELGEI 313
Score = 59 (25.8 bits), Expect = 3.9e-61, Sum P(2) = 3.9e-61
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 132 SGAGHDYYQAS-GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
SG+G +S G+ S S D ES S ++S + R+K K+ K + D S
Sbjct: 30 SGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREK--KQVQAKPPKADGS-- 85
Query: 191 HEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS 232
E +P L + S V ++ + K + S + + S
Sbjct: 86 -EFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDSSSS 126
Score = 57 (25.1 bits), Expect = 6.3e-61, Sum P(2) = 6.3e-61
Identities = 32/131 (24%), Positives = 51/131 (38%)
Query: 81 SGSQIG--DSSTAQCAGSSSQV-AGVVKDSKAGLAENEMSKIEPFTSSRPPV--APSGAG 135
S SQ G DS + +GS S+ + ++ K A+ + F S P + A
Sbjct: 43 SSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAV 102
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN 195
Q SS S E SS + SA+ S E +K K + G S+S +
Sbjct: 103 LKKQQQQQKAASSDSGSEEDSSSSED-SADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 161
Query: 196 ENPQQLDSRNS 206
++ ++S
Sbjct: 162 SESEEDGDKSS 172
Score = 55 (24.4 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 32/134 (23%), Positives = 54/134 (40%)
Query: 693 DNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHT 752
D+D G +SG+ S S S + SG+ S+ S D S +
Sbjct: 21 DDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESES-----DTSREKKQV 75
Query: 753 SQDDPKFSDGS---RTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
PK +DGS ++ P +V+ L +Q ++ K+ +DS + SE D
Sbjct: 76 QAKPPK-ADGSEFWKSSPSILAVQRSAVLKKQQQQQ-KAASSDSGSEEDSSSSEDSADDS 133
Query: 810 Q---KRKLLVEQNW 820
K+K +++W
Sbjct: 134 SSETKKKKHKDEDW 147
Score = 48 (22.0 bits), Expect = 5.6e-60, Sum P(2) = 5.6e-60
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTP 455
DE S SSG+ D S + S + G +S G++ + ++G S SQ+
Sbjct: 6 DEESVRNSSGESSRSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSESGSESGSQSE 63
Query: 456 VFSGMPFKEQQLK 468
S +++Q++
Sbjct: 64 SESDTSREKKQVQ 76
Score = 47 (21.6 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SG+ S S S SS D S+ S S + + + S D+S + P +
Sbjct: 24 SGSASGSGS-GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKA 82
Query: 202 D 202
D
Sbjct: 83 D 83
Score = 46 (21.3 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 36/157 (22%), Positives = 58/157 (36%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
ES S D + S S G + + SS S E +E+ Q +S + +K
Sbjct: 16 ESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDS-ESGSESGSQSESESDTSREKKQ 74
Query: 214 KMNKVDAPGGFSVKGAEQSNFNMVPSG---GQMEHFSSLSGNMSSILRVKQEGQNVTEKP 270
K G + S + S Q + + S + S +E + +E
Sbjct: 75 VQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS-----EEDSSSSE-- 127
Query: 271 LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
DSA+ S+S + K E+ ++S SG G S
Sbjct: 128 -DSADDSSSETKKKKHK-DEDWQMSGSGSVSGTGSDS 162
Score = 44 (20.5 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL-SSANGVLASRGT 317
D +V NS +S S ++ SASG G+S SS++G + G+
Sbjct: 6 DEESVRNSSGESSRS---DDDSGSASGSGSGSSSGSSSDGSSSQSGS 49
Score = 43 (20.2 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPAD-HSIHAEERKQL 592
GSSSG + SS + + +SG ++ S + E+KQ+
Sbjct: 33 GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQV 75
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 663 (238.4 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 173/485 (35%), Positives = 253/485 (52%)
Query: 1078 SVSEQPTCLQGGK---LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP+ + G + LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 462 ALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 520
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ----- 1189
GPF W+ EI WAP+++ +VY G R + + +H
Sbjct: 521 HEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRL 580
Query: 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 1249
KFN+LLTTYE L+ D+ L + W +I +DE HR+KN L ++ L+
Sbjct: 581 KFNILLTTYEILLK--DKSFLGGLNWAFIGVDEAHRLKNDDSLL----------YKTLID 628
Query: 1250 GTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIIN 1309
F E FS W + FE +
Sbjct: 629 LVTIDSDTAPSCTIPQELWLLHFIMPEKFSSW--EDFEEEHGKGREYGYASLHKELEPF- 685
Query: 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL--GSIGNSKGR 1367
L +V + V + L KVE L ++ L + Y K ++ R + L GS G++ G
Sbjct: 686 LLRRVKKD-VEKSLPAKVEQILRMEMSALQK----QYYKWILTRNYKALSKGSKGSTSG- 739
Query: 1368 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 1427
N +MEL+ CNH YL + ++ + + L ++R GKL +LD+LL +L+ +
Sbjct: 740 -FLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGN 797
Query: 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487
RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS R
Sbjct: 798 RVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTR 857
Query: 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547
AGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE +
Sbjct: 858 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILER 917
Query: 1548 AEHKL 1552
A+ K+
Sbjct: 918 AKKKM 922
Score = 89 (36.4 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 38/141 (26%), Positives = 60/141 (42%)
Query: 714 NSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVR 773
N H S+R+ S +D D S SG +S D GS ++
Sbjct: 2 NGHSDEESVRNSSGESSRSDDDSGSASG--SGSGSSSGSSSDGSSSQSGSSDS--ESGSE 57
Query: 774 NGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMST 833
+G +E D + + P PK SE W L V+++ +LK+Q+ +Q+ ++
Sbjct: 58 SGSQSESESDTSREKKQVQAKP-PKADGSEFW--KSSPSILAVQRSAVLKKQQQQQKAAS 114
Query: 834 CFNKLKESVSSSEDISAKTKS 854
+ +E SSSED SA S
Sbjct: 115 SDSGSEEDSSSSED-SADDSS 134
Score = 82 (33.9 bits), Expect = 1.9e-63, Sum P(2) = 1.9e-63
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 59 ETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSK 118
E+V N +G + S SGS G SS + GSSSQ DS++G S+
Sbjct: 8 ESVRNSSGESSRSDDDSGS--ASGSGSGSSSGSSSDGSSSQSGS--SDSESGSESGSQSE 63
Query: 119 IEPFTS-SRPPVA---PSGAGHDYYQAS----GTHRSS---QSFDHESPSSLDTRSA-NS 166
E TS + V P G +++++S RS+ + + +S D+ S +S
Sbjct: 64 SESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDS 123
Query: 167 QSQERQKDGKKASTKRKR 184
S E D + TK+K+
Sbjct: 124 SSSEDSADDSSSETKKKK 141
Score = 74 (31.1 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 48/213 (22%), Positives = 85/213 (39%)
Query: 87 DSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYY-QASGTH 145
DS + + + SS A D + + + K E + S + SG G D + G
Sbjct: 116 DSGSEEDSSSSEDSA----DDSSSETKKKKHKDEDWQMSGSG-SVSGTGSDSESEEDGDK 170
Query: 146 RSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRG-DSSISHEPQNENPQQLDSR 204
S + + + +S S+ + K GKK++ ++KR DSS E +E+ + SR
Sbjct: 171 SSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEEEDDDEDYDKRGSR 230
Query: 205 NSV---VNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQ 261
V+ ++ + K D+ V G + VP + E F ++ M S R+ +
Sbjct: 231 RQATVNVSYKEAEETKTDSDDLLEVCGED------VPQTEEDE-FETIEKFMDS--RIGR 281
Query: 262 EGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
+G + + P A K E E+
Sbjct: 282 KGATGASTTIYAVEADGD-PNAGFEKSKELGEI 313
Score = 59 (25.8 bits), Expect = 5.0e-61, Sum P(2) = 5.0e-61
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 132 SGAGHDYYQAS-GTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSIS 190
SG+G +S G+ S S D ES S ++S + R+K K+ K + D S
Sbjct: 30 SGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREK--KQVQAKPPKADGS-- 85
Query: 191 HEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQS 232
E +P L + S V ++ + K + S + + S
Sbjct: 86 -EFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEEDSSSS 126
Score = 57 (25.1 bits), Expect = 8.2e-61, Sum P(2) = 8.2e-61
Identities = 32/131 (24%), Positives = 51/131 (38%)
Query: 81 SGSQIG--DSSTAQCAGSSSQV-AGVVKDSKAGLAENEMSKIEPFTSSRPPV--APSGAG 135
S SQ G DS + +GS S+ + ++ K A+ + F S P + A
Sbjct: 43 SSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAV 102
Query: 136 HDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQN 195
Q SS S E SS + SA+ S E +K K + G S+S +
Sbjct: 103 LKKQQQQQKAASSDSGSEEDSSSSED-SADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 161
Query: 196 ENPQQLDSRNS 206
++ ++S
Sbjct: 162 SESEEDGDKSS 172
Score = 55 (24.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 32/134 (23%), Positives = 54/134 (40%)
Query: 693 DNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHT 752
D+D G +SG+ S S S + SG+ S+ S D S +
Sbjct: 21 DDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESES-----DTSREKKQV 75
Query: 753 SQDDPKFSDGS---RTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDM 809
PK +DGS ++ P +V+ L +Q ++ K+ +DS + SE D
Sbjct: 76 QAKPPK-ADGSEFWKSSPSILAVQRSAVLKKQQQQQ-KAASSDSGSEEDSSSSEDSADDS 133
Query: 810 Q---KRKLLVEQNW 820
K+K +++W
Sbjct: 134 SSETKKKKHKDEDW 147
Score = 48 (22.0 bits), Expect = 7.3e-60, Sum P(2) = 7.3e-60
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 396 DETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTP 455
DE S SSG+ D S + S + G +S G++ + ++G S SQ+
Sbjct: 6 DEESVRNSSGESSRSDDDSGSASGSGSGSSSG--SSSDGSSSQSGSSDSESGSESGSQSE 63
Query: 456 VFSGMPFKEQQLK 468
S +++Q++
Sbjct: 64 SESDTSREKKQVQ 76
Score = 47 (21.6 bits), Expect = 9.3e-60, Sum P(2) = 9.3e-60
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 142 SGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SG+ S S S SS D S+ S S + + + S D+S + P +
Sbjct: 24 SGSASGSGS-GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKA 82
Query: 202 D 202
D
Sbjct: 83 D 83
Score = 46 (21.3 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 36/157 (22%), Positives = 58/157 (36%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKG 213
ES S D + S S G + + SS S E +E+ Q +S + +K
Sbjct: 16 ESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDS-ESGSESGSQSESESDTSREKKQ 74
Query: 214 KMNKVDAPGGFSVKGAEQSNFNMVPSG---GQMEHFSSLSGNMSSILRVKQEGQNVTEKP 270
K G + S + S Q + + S + S +E + +E
Sbjct: 75 VQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS-----EEDSSSSE-- 127
Query: 271 LDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
DSA+ S+S + K E+ ++S SG G S
Sbjct: 128 -DSADDSSSETKKKKHK-DEDWQMSGSGSVSGTGSDS 162
Score = 44 (20.5 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 272 DSANVSNSVPRASNSKFPEEVEVSASGQQQGNSL-SSANGVLASRGT 317
D +V NS +S S ++ SASG G+S SS++G + G+
Sbjct: 6 DEESVRNSSGESSRS---DDDSGSASGSGSGSSSGSSSDGSSSQSGS 49
Score = 43 (20.2 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 551 GSSSGGFLEADSSSKEVENLKMMDKSGPPAD-HSIHAEERKQL 592
GSSSG + SS + + +SG ++ S + E+KQ+
Sbjct: 33 GSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDTSREKKQV 75
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 435 (158.2 bits), Expect = 6.2e-64, Sum P(3) = 6.2e-64
Identities = 103/308 (33%), Positives = 155/308 (50%)
Query: 1081 EQPTCLQGG-KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
+QP L KL+ YQ+ GL+WL+ L+ ++L+GILADEMGLGKT+Q IA + +L E K
Sbjct: 437 KQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYE-KGI 495
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-KFNVLLTTY 1198
+GP W E+ W P + ++Y G E+R+ L ++ + FN++++TY
Sbjct: 496 KGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTY 555
Query: 1199 EYLM-NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
+ N HDR K++ Y + DEGH +KN + L + HRLLLTGTP
Sbjct: 556 NLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNL 615
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
+F+SS SQ +K F + +I ++P
Sbjct: 616 LELMSLLNFIMPSMFSSST--SQ-ISKMFSTRSSEEESSFHKDRIAQARLI------MKP 666
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELR 1377
F+LRR+K +V ELP K+E++ C S Q L + + L N R + N +M+LR
Sbjct: 667 FILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKRLKKTPNGDKRELCNVMMQLR 726
Query: 1378 NICNHPYL 1385
+ NHP L
Sbjct: 727 KMANHPLL 734
Score = 294 (108.6 bits), Expect = 6.2e-64, Sum P(3) = 6.2e-64
Identities = 67/169 (39%), Positives = 98/169 (57%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L + L KLK RV+ FS T +LD++E L ++Y+RLDG T +R LI
Sbjct: 801 GKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLI 860
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
DK+N F+FLLS RAGG G+NL +A+TVI+ D D NP D QA+ R HR+GQ R V
Sbjct: 861 DKYNTNPE-IFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTV 919
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLE 1578
V++ + ++E+ + + KL + Q +T ++ E E L+
Sbjct: 920 QVIKLISKDSIEDCMLRVGQEKLKL-EQDMTTDEGEDGAITEQMAELLK 967
Score = 67 (28.6 bits), Expect = 6.2e-64, Sum P(3) = 6.2e-64
Identities = 25/120 (20%), Positives = 47/120 (39%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH--EPQ 194
DY A G+ S D SP + ++ + S ++K K T+R G SS+S
Sbjct: 205 DYENALGSLLVFSSTDTSSPENQKSKQKSKSSHSKEKTDK--ITQRPSGSSSLSRWLTAA 262
Query: 195 NENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMS 254
+ + ++ S +++ + F K ++ N V + + S +MS
Sbjct: 263 SSHVPEVSSMSALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSASEDEDEIDSDVDSMS 322
Score = 53 (23.7 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 35/153 (22%), Positives = 72/153 (47%)
Query: 171 RQKDGKKASTKRK--RGDSSISHEPQNENPQQLD-SRN---SVVNPRKGKMNKVDAPGGF 224
R D + KRK R DSS S + +E+ + + SR +++ K K+ ++
Sbjct: 137 RSDDDDQPKKKRKIQRSDSSESEDEDSEDEESEEPSREKQEALLKKLKRKLPDIEKEVLR 196
Query: 225 SVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQN---------VTEKPLDSAN 275
+ ++ +++ + G + FSS + + KQ+ ++ +T++P S++
Sbjct: 197 DI--LKEHDWDYENALGSLLVFSSTDTSSPENQKSKQKSKSSHSKEKTDKITQRPSGSSS 254
Query: 276 VSNSVPRASNSKFPEEVEVSASGQQQGNSLSSA 308
+S + AS S PE +SA Q+ ++LS +
Sbjct: 255 LSRWLTAAS-SHVPEVSSMSALKTQK-SALSKS 285
Score = 49 (22.3 bits), Expect = 4.7e-62, Sum P(3) = 4.7e-62
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 937 LDEVFKIKRERWRGVNKYVKE---FHKRKERIHREKID-RIQREKINLLKINDVEG---Y 989
LD F+ +R+ G+++ + K ++ H+ K D + K + + DV
Sbjct: 6 LDR-FRFQRDNAVGIHRKSPDGSNSDKENKQAHQRKADGQFPSGKTSRQVLEDVSSDDEV 64
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKL 1015
+RM +D+ SD + K+ E + KL
Sbjct: 65 VRMGKDSASDLQQHINKDMEDKIIKL 90
Score = 48 (22.0 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKRKR 184
+SP ++ N Q+ +R+ DG+ S K R
Sbjct: 22 KSPDGSNSDKENKQAHQRKADGQFPSGKTSR 52
Score = 48 (22.0 bits), Expect = 3.8e-62, Sum P(4) = 3.8e-62
Identities = 22/116 (18%), Positives = 48/116 (41%)
Query: 961 RKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ 1020
RK++ R D ++K + + + E +D +S+ ++ ++ E L+KL KL
Sbjct: 131 RKDKGGRSDDDDQPKKKRKIQRSDSSESEDEDSEDEESEEPSR--EKQEALLKKLKRKLP 188
Query: 1021 EAKS------MASH---FENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+ + + H +EN + S + P + + ++ H E +K
Sbjct: 189 DIEKEVLRDILKEHDWDYENALGSLLVFSSTDTSSPENQKSKQKSKSSHSKEKTDK 244
Score = 39 (18.8 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 574 DKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQ 610
DK G D ++RK + E+E + E ES+
Sbjct: 133 DKGGRSDDDDQPKKKRKIQRSDSSESEDEDSEDEESE 169
Score = 39 (18.8 bits), Expect = 8.0e-21, Sum P(4) = 8.0e-21
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 779 TTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVE 817
+T EE+ S H D + M + +I+ K ++L E
Sbjct: 642 STRSSEEESSFHKDRIAQARLIM-KPFILRRVKSEVLKE 679
Score = 38 (18.4 bits), Expect = 6.7e-61, Sum P(3) = 6.7e-61
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 154 ESPSSLDTRSANSQSQERQKDGKKASTKR-KRGDSSISHE 192
+S S D S + +S+E ++ ++A K+ KR I E
Sbjct: 154 DSSESEDEDSEDEESEEPSREKQEALLKKLKRKLPDIEKE 193
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 420 (152.9 bits), Expect = 1.1e-63, Sum P(3) = 1.1e-63
Identities = 123/408 (30%), Positives = 199/408 (48%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 392 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 449
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 450 LIQERDVVIKLMNKCEDISNKLTKQVTMLTGNGGGWNTEQPSILNQSLSLKPYQKVGLNW 509
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N +GP W E+N
Sbjct: 510 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-KGPHLIVVPASTIDNWLREVNL 568
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ + ++++NV++TTY + + DR +++ +Y I
Sbjct: 569 WCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 628
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 629 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 686
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S + + I Q+++PF+LRR+K +V +LP K +R+
Sbjct: 687 E-IRRMFSSKTKPADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIE 741
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 742 LCAMSEKQEQLYMNLFNRLKKSINNMEKNTEMCNVMMQLRKMANHPLL 789
Score = 309 (113.8 bits), Expect = 1.1e-63, Sum P(3) = 1.1e-63
Identities = 68/163 (41%), Positives = 96/163 (58%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 916 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ T+EE + + KL + T D + D
Sbjct: 975 LVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPAD 1017
Score = 67 (28.6 bits), Expect = 1.1e-63, Sum P(3) = 1.1e-63
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + SPS + +S+SQ K+ K K+K S +PQN ++ + +V
Sbjct: 298 QDMQYASPSEFPNGKEVSSRSQNYPKNAAKTKLKQK-----CSMKPQNGFNKK--RKKNV 350
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 351 FNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 410
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 411 QKKAQKITELRPFNS 425
Score = 53 (23.7 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
SP SL N++ + + + K DSS+ P+N+
Sbjct: 34 SPISLSAEEENAEGEVSRAGTPDSDVTEKTEDSSVPETPEND 75
Score = 44 (20.5 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 747 EKQEQLYMNLFNRLKKSINNME 768
Score = 38 (18.4 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 283 ASNSKFPEEVEVSASGQ 299
AS S+FP EVS+ Q
Sbjct: 303 ASPSEFPNGKEVSSRSQ 319
Score = 38 (18.4 bits), Expect = 1.0e-59, Sum P(4) = 1.0e-59
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S+ E + S K+KR D E+ + + S+V
Sbjct: 213 SSSSEPFEEDEFNDDQSMKKKRLDHGEESNESAESSTNWEKQESIV 258
Score = 37 (18.1 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 893 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 932
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 417 (151.9 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 122/408 (29%), Positives = 200/408 (49%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 390 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 447
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 448 LIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNW 507
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N +GP W E+N
Sbjct: 508 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-KGPHLIVVPASTIDNWLREVNL 566
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ + ++++NV++TTY + + DR +++ +Y I
Sbjct: 567 WCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 626
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 627 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 684
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S ++ + I Q+++PF+LRR+K +V +LP K +++
Sbjct: 685 E-IRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIE 739
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 740 LCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 316 (116.3 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 69/163 (42%), Positives = 97/163 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 914 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D T D
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGTMPAD 1015
Score = 63 (27.2 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + S S + A+S+SQ K+ K K+K S +PQN ++ + +V
Sbjct: 296 QDMQYASQSEFPNGKEASSRSQNYPKNAAKTKLKQK-----CSMKPQNGFNKK--RKKNV 348
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 349 FNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 408
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 409 QKKAQKITELRPFNS 423
Score = 48 (22.0 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 19/101 (18%), Positives = 39/101 (38%)
Query: 117 SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
SKIE + P + G ++ + S S + ++ +S E ++ +
Sbjct: 15 SKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKTEDSSVPETTENER 74
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
KAS + I + + + + + S N ++ K NK
Sbjct: 75 KASISYFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNK 115
Score = 41 (19.5 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S+ E + S K+KR D E+ + + S+V
Sbjct: 211 SSSSEPYEEDEFNDDQSIKKKRLDHGEESNESAESSNNWEKQESIV 256
Score = 40 (19.1 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 252 NMSSILRVKQEGQN-VTEKPLDSANVSNSVPRASNSKFPEE--VEVSASGQQQGNSLSSA 308
N+ ++ R + E ++ + E P + S P + S EE EVS +G +
Sbjct: 2 NLFNLDRFRFEKRSKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKT 61
Query: 309 NGVLASRGTWNQNRAGFPFERSQ 331
T N+ +A + ++Q
Sbjct: 62 EDSSVPETTENERKASISYFKNQ 84
Score = 40 (19.1 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 745 EKQEQLYLGLFNRLKKSINNIE 766
Score = 39 (18.8 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNS 286
+ Q++ +K LD SN +SN+
Sbjct: 224 DDQSIKKKRLDHGEESNESAESSNN 248
Score = 37 (18.1 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 891 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 930
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 417 (151.9 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 122/408 (29%), Positives = 200/408 (49%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 390 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 447
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 448 LIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNW 507
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N +GP W E+N
Sbjct: 508 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-KGPHLIVVPASTIDNWLREVNL 566
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ + ++++NV++TTY + + DR +++ +Y I
Sbjct: 567 WCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 626
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 627 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 684
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S ++ + I Q+++PF+LRR+K +V +LP K +++
Sbjct: 685 E-IRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIE 739
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 740 LCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 316 (116.3 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 69/163 (42%), Positives = 97/163 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 914 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D T D
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGTMPAD 1015
Score = 63 (27.2 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + S S + A+S+SQ K+ K K+K S +PQN ++ + +V
Sbjct: 296 QDMQYASQSEFPNGKEASSRSQNYPKNAAKTKLKQK-----CSMKPQNGFNKK--RKKNV 348
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 349 FNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 408
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 409 QKKAQKITELRPFNS 423
Score = 48 (22.0 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 19/101 (18%), Positives = 39/101 (38%)
Query: 117 SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
SKIE + P + G ++ + S S + ++ +S E ++ +
Sbjct: 15 SKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKTEDSSVPETTENER 74
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
KAS + I + + + + + S N ++ K NK
Sbjct: 75 KASISYFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNK 115
Score = 41 (19.5 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S+ E + S K+KR D E+ + + S+V
Sbjct: 211 SSSSEPYEEDEFNDDQSIKKKRLDHGEESNESAESSNNWEKQESIV 256
Score = 40 (19.1 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 252 NMSSILRVKQEGQN-VTEKPLDSANVSNSVPRASNSKFPEE--VEVSASGQQQGNSLSSA 308
N+ ++ R + E ++ + E P + S P + S EE EVS +G +
Sbjct: 2 NLFNLDRFRFEKRSKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKT 61
Query: 309 NGVLASRGTWNQNRAGFPFERSQ 331
T N+ +A + ++Q
Sbjct: 62 EDSSVPETTENERKASISYFKNQ 84
Score = 40 (19.1 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 745 EKQEQLYLGLFNRLKKSINNIE 766
Score = 39 (18.8 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNS 286
+ Q++ +K LD SN +SN+
Sbjct: 224 DDQSIKKKRLDHGEESNESAESSNN 248
Score = 37 (18.1 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 891 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 930
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 417 (151.9 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 122/408 (29%), Positives = 200/408 (49%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 390 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 447
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 448 LIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNW 507
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N +GP W E+N
Sbjct: 508 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-KGPHLIVVPASTIDNWLREVNL 566
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ + ++++NV++TTY + + DR +++ +Y I
Sbjct: 567 WCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 626
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 627 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 684
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S ++ + I Q+++PF+LRR+K +V +LP K +++
Sbjct: 685 E-IRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIE 739
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 740 LCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 316 (116.3 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 69/163 (42%), Positives = 97/163 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 914 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D T D
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGTMPAD 1015
Score = 63 (27.2 bits), Expect = 1.2e-63, Sum P(3) = 1.2e-63
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + S S + A+S+SQ K+ K K+K S +PQN ++ + +V
Sbjct: 296 QDMQYASQSEFPNGKEASSRSQNYPKNAAKTKLKQK-----CSMKPQNGFNKK--RKKNV 348
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 349 FNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 408
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 409 QKKAQKITELRPFNS 423
Score = 48 (22.0 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 19/101 (18%), Positives = 39/101 (38%)
Query: 117 SKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGK 176
SKIE + P + G ++ + S S + ++ +S E ++ +
Sbjct: 13 SKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKTEDSSVPETTENER 72
Query: 177 KASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
KAS + I + + + + + S N ++ K NK
Sbjct: 73 KASISYFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNK 113
Score = 41 (19.5 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S+ E + S K+KR D E+ + + S+V
Sbjct: 211 SSSSEPYEEDEFNDDQSIKKKRLDHGEESNESAESSNNWEKQESIV 256
Score = 40 (19.1 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 745 EKQEQLYLGLFNRLKKSINNIE 766
Score = 39 (18.8 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 262 EGQNVTEKPLDSANVSNSVPRASNS 286
+ Q++ +K LD SN +SN+
Sbjct: 224 DDQSIKKKRLDHGEESNESAESSNN 248
Score = 37 (18.1 bits), Expect = 6.1e-61, Sum P(3) = 6.1e-61
Identities = 15/73 (20%), Positives = 27/73 (36%)
Query: 261 QEGQNVTEKPLDSANVSNSVPRASNSKFPEE--VEVSASGQQQGNSLSSANGVLASRGTW 318
++ + E P + S P + S EE EVS +G + T
Sbjct: 10 EKRSKIEEVPEAAPQPSQPGPSSPISLSAEEENAEVSRAGTPDSDITEKTEDSSVPETTE 69
Query: 319 NQNRAGFPFERSQ 331
N+ +A + ++Q
Sbjct: 70 NERKASISYFKNQ 82
Score = 37 (18.1 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 891 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 930
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 681 (244.8 bits), Expect = 1.4e-63, P = 1.4e-63
Identities = 201/608 (33%), Positives = 305/608 (50%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ V Y
Sbjct: 91 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDDKQSLISVGDYRHR 150
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 151 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 203
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 204 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 263
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 264 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 321
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS+EDF WF+
Sbjct: 322 EKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTK-NC 380
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQK 1348
GD ++ R+ + V + L K E ++ + ++ R Y K
Sbjct: 381 LGDQKL-VERLHTVLKPFLLRRI----KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTK 432
Query: 1349 LLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE-----VDTLIPKHYLP 1403
+LMK ++ L S G + N +M+LR CNHPYL AE D I +
Sbjct: 433 ILMKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEHIVSNSGK 490
Query: 1404 PIV--RLCGKL-EMLDRLLPKLKATDHR-VLFFSTMTRLLDVME-DYLTFKQYRY----- 1453
+V +L KL E R+L + T +L M R + D T + R
Sbjct: 491 MVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKD 550
Query: 1454 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVD 1513
++ H G A I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVD
Sbjct: 551 FKIIFHEYQGSNEA-IEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 609
Query: 1514 LQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAED 1572
LQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++
Sbjct: 610 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMA 669
Query: 1573 RREYLESL 1580
+ E L+ +
Sbjct: 670 KEEMLQMI 677
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 417 (151.9 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 122/408 (29%), Positives = 200/408 (49%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 393 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 450
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 451 LIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNW 510
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N +GP W E+N
Sbjct: 511 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-KGPHLIVVPASTIDNWLREVNL 569
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ + ++++NV++TTY + + DR +++ +Y I
Sbjct: 570 WCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 629
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 630 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 687
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S ++ + I Q+++PF+LRR+K +V +LP K +++
Sbjct: 688 E-IRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIE 742
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 743 LCAMSEKQEQLYLGLFNRLKKSINNMEKNTEMCNVMMQLRKMANHPLL 790
Score = 311 (114.5 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 68/163 (41%), Positives = 97/163 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 857 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 916
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 917 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 975
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D + D
Sbjct: 976 LVIKLISQGTIEESMLKINQQKLKLEQDMTTIDEGDEGSMPAD 1018
Score = 67 (28.6 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + SPS + +S+SQ K+ K K+K S +PQN ++ + +V
Sbjct: 299 QDMQYASPSEFPNGKEVSSRSQNYPKNAAKTKLKQK-----CSMKPQNGFNKK--RKKNV 351
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 352 FNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 411
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 412 QKKAQKITELRPFNS 426
Score = 51 (23.0 bits), Expect = 6.1e-61, Sum P(4) = 6.1e-61
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKAS--TKRKRGDSSISHEPQNE 196
SP SL N++ E + G S T++ DSS+ P+NE
Sbjct: 34 SPISLSAEEENAEG-EVSRAGTPDSDVTEKTAEDSSVPEMPENE 76
Score = 41 (19.5 bits), Expect = 6.7e-60, Sum P(4) = 6.7e-60
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S+ E + S K+KR D E+ + + S+V
Sbjct: 214 SSSSEPYEEDEFNDDQSIKKKRLDHGEESNESAESSSNWEKQESIV 259
Score = 41 (19.5 bits), Expect = 7.1e-24, Sum P(3) = 7.1e-24
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 748 EKQEQLYLGLFNRLKKSINNME 769
Score = 38 (18.4 bits), Expect = 6.1e-61, Sum P(4) = 6.1e-61
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 283 ASNSKFPEEVEVSASGQ 299
AS S+FP EVS+ Q
Sbjct: 304 ASPSEFPNGKEVSSRSQ 320
Score = 37 (18.1 bits), Expect = 2.1e-60, Sum P(3) = 2.1e-60
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 289 PEEV-EVSASGQQQGNSLSS----ANGVLASRGTWNQNRAGFPFERSQVPRFPGN 338
PE + S G SLS+ A G ++ GT + + E S VP P N
Sbjct: 21 PEATPQPSRPGPSSPISLSAEEENAEGEVSRAGTPDSDVTEKTAEDSSVPEMPEN 75
Score = 37 (18.1 bits), Expect = 5.9e-35, Sum P(3) = 5.9e-35
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 894 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 933
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 408 (148.7 bits), Expect = 3.8e-63, Sum P(4) = 3.8e-63
Identities = 102/316 (32%), Positives = 156/316 (49%)
Query: 1082 QPTCLQGG-KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
QP L +L+ YQ+ GL WLV L+ N+L+GILADEMGLGKT+Q I+ + +L + N
Sbjct: 419 QPEILSSTFQLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQEGN-H 477
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ--KFNVLLTTY 1198
GP W E+N W P +VY G ++R+ + + +I++Q ++N++++TY
Sbjct: 478 GPHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADDRKYM-RYEILNQIVEYNIIVSTY 536
Query: 1199 EYLM-NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
+ N DR K++ Y + DEGH +KN + L + +RLLLTGTP
Sbjct: 537 NLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNL 596
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
+F+SS SQ K F +I ++P
Sbjct: 597 LELMSLLNFIMPNMFSSST--SQ-IAKMFSMKSSEEQSSFERDRITHAKLI------MKP 647
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELR 1377
F+LRR+K +V +LP K E++ C S Q+ L + L N + R + N +M+LR
Sbjct: 648 FILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLKHSSNGEKRELTNVMMQLR 707
Query: 1378 NICNHPYLS-QLHAEE 1392
+ NHP L Q + E
Sbjct: 708 KMSNHPLLHRQFYTTE 723
Score = 323 (118.8 bits), Expect = 3.8e-63, Sum P(4) = 3.8e-63
Identities = 78/210 (37%), Positives = 117/210 (55%)
Query: 1372 SVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLF 1431
S EL +C Y S LH +++T ++ GKL +L +LL LK RV+
Sbjct: 754 SDFELHRLCQQ-Y-SALHEYQLNT--------DVLLDSGKLSLLTQLLNSLKEKGDRVVL 803
Query: 1432 FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491
FS T +LD++E +L ++RY RLDG T DR LID+FN D F+FLLS RAGG+
Sbjct: 804 FSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNT-DQDIFVFLLSTRAGGL 862
Query: 1492 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551
G+NL +A+ VI+ D D NP D QA+ R HR+GQ + V V++ + ++E+ + E K
Sbjct: 863 GINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERK 922
Query: 1552 LGVANQSITAGFFDNNTSAEDRREYLESLL 1581
L + + + +T +D L++ L
Sbjct: 923 LKLEQEMTATQDGEEDTLPDDMTTLLKASL 952
Score = 61 (26.5 bits), Expect = 3.8e-63, Sum P(4) = 3.8e-63
Identities = 40/160 (25%), Positives = 63/160 (39%)
Query: 78 PLTSGSQIGDS-STAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGH 136
P S S I ++ T + +GSS A DS + +E S + P RP + +
Sbjct: 16 PPESDSVIPETPETKRPSGSSLSTAISDSDSDSD-SEISGSSMMPVRKLRPRKRKAASSA 74
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
D Y S P+ +R+ S SQ+ Q +KAS + I+H P
Sbjct: 75 DEYSVSDEEEEIVVKTKRRPTH--SRTTRSTSQQAQPAHQKASETV----TDIAH-PSPL 127
Query: 197 NPQQLDSRNSVVNPRK----GKMNKVDAPGGFSVKGAEQS 232
+ + +SV R+ G + D+ G V A+ S
Sbjct: 128 KTSGMAAADSVQQRRRQQMCGSSQESDSRKGGRVSAADDS 167
Score = 48 (22.0 bits), Expect = 4.8e-62, Sum P(3) = 4.8e-62
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 88 SSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIE 120
SS +C+ S + V + DS + +E +SK++
Sbjct: 287 SSEEECSDSEASVVNGLLDSDSDQSEETLSKLK 319
Score = 47 (21.6 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
Identities = 41/221 (18%), Positives = 78/221 (35%)
Query: 96 SSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHES 155
S+SQ A KA +++ P +S A S Q G SSQ D
Sbjct: 102 STSQQAQPAHQ-KASETVTDIAHPSPLKTSGMAAADSVQQRRRQQMCG---SSQESDSRK 157
Query: 156 PSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKM 215
+ + + +R KD ++ K +R H +NE L + +++ +
Sbjct: 158 GGRVSAADDSEEEGQRSKDQERMLRKLQR---KFPHLNKNELRDVLQEHDWLIDDALETL 214
Query: 216 NKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGN--MSSILRVKQEGQNVTEKPLDS 273
V+ + S+ P+ +H ++ + + ++ + +PLD
Sbjct: 215 RMFS---DLVVESEDDSSQTSTPA----KHTRRVAETRPQAQVTKLSSPPKPKPSRPLDG 267
Query: 274 ANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLAS 314
S + A + VS+ + + S NG+L S
Sbjct: 268 TRTSQRI--AKQPILAKYTYVSSEEECSDSEASVVNGLLDS 306
Score = 44 (20.5 bits), Expect = 3.8e-63, Sum P(4) = 3.8e-63
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 769 DNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKW--IMDMQKRKLLVEQNWILKQQK 826
++ R G ++ D E++ + + K+ + + R +L E +W++
Sbjct: 152 ESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEHDWLIDDAL 211
Query: 827 TKQRMSTCFNKLKESVSSSEDISAKTKS 854
RM F+ L V SED S++T +
Sbjct: 212 ETLRM---FSDL---VVESEDDSSQTST 233
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 415 (151.1 bits), Expect = 6.4e-63, Sum P(3) = 6.4e-63
Identities = 105/327 (32%), Positives = 155/327 (47%)
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136
E + P +G L +YQ+ G++WL+ +YN LN IL DEMGLGKT+Q++A + YL +
Sbjct: 380 EGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQI 439
Query: 1137 KNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQK--FNVL 1194
GP W E + W P I + Y G +ER+ L + ++ QK +V+
Sbjct: 440 -GKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHL-RHRVKKQKDHIDVI 497
Query: 1195 LTTYEYLMNKHDRPKLSK-IQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPX 1253
LTTY + +K D K K +Y+I DEGH +KN + L + ++LLTGTP
Sbjct: 498 LTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPL 557
Query: 1254 XXXXXXXXXXXXXXXXXIFNS-SEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
+FN ED + F+ G + D I
Sbjct: 558 QNNLIELISLMYFVLSKVFNKYCEDITHLLQH-FKQLGP-ALDTKNKALYQQDRI-EEAK 614
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNS 1372
+L+P++LRRLK++V LP K E+++ E QK L + E L S G S + S
Sbjct: 615 AILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEES-GDS-YGS 672
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPK 1399
+M LR NHP L + +E D + K
Sbjct: 673 LMRLRQAANHPLLRR--SEYTDQKLDK 697
Score = 317 (116.6 bits), Expect = 6.4e-63, Sum P(3) = 6.4e-63
Identities = 76/179 (42%), Positives = 107/179 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK E LD +LP+++ +VL FS T +LD++E YL + Y Y RLDG T DR +I
Sbjct: 753 GKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMI 812
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
++FN F+FLLS RAGG+G+NL +A+ +II D D+NP D QA+ R HR+GQ++ V
Sbjct: 813 NEFNLSKD-LFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPV 871
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
V R + TVE + A A+ KL + Q +T G + + E LRE K+EE
Sbjct: 872 HVTRLVSKGTVEVGMLALAKKKLQLEKQ-VTDGV---------KGQLDEDALRELKEEE 920
Score = 56 (24.8 bits), Expect = 6.4e-63, Sum P(3) = 6.4e-63
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 132 SGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
SG G + ++ G+ + S++ + ++A +++Q+ QK KKA + D
Sbjct: 205 SGKGSEKEESEGSGKDSETEEVTMKQGQSLKAAMAKAQKEQK--KKAESDE---DWEEDE 259
Query: 192 EPQNENPQQLDSRNSVVNPRKGK 214
+ N + + S +S + R+ K
Sbjct: 260 DDMNADGDETPSDDSDIEERRAK 282
Score = 49 (22.3 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 44/241 (18%), Positives = 92/241 (38%)
Query: 80 TSGSQIGDSSTAQCAGS--SSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHD 137
TS Q G+ G+ SS + + KA L++N + ++RPP +G G
Sbjct: 4 TSDFQTGERVRVAHQGNPQSSSLQADMDAKKALLSQNLNNG---HLTARPP-RTTGPGIK 59
Query: 138 YYQAS-----GTHRSSQSF-DHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH 191
Y + G+ + + D PS + N++ E D ++ ++++ S
Sbjct: 60 YGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDEDDDDYEEEGPRKRKAPSKKKL 119
Query: 192 EPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVK----GAEQSNFNMVPSGGQMEHFS 247
EN ++ DS ++ + + + K G+E N++ + QM S
Sbjct: 120 VYPRENYRREDSETPEPEMKRIRTLSDSSDDEWMTKPRLNGSESPIGNVMRT--QMAKRS 177
Query: 248 SLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
+ S ++ + E + ++ + + + ++ E +QG SL +
Sbjct: 178 AAS-KRKIVIDDESEDDFINDEEISEKGSGKGSEKEESEGSGKDSETEEVTMKQGQSLKA 236
Query: 308 A 308
A
Sbjct: 237 A 237
Score = 44 (20.5 bits), Expect = 1.2e-61, Sum P(3) = 1.2e-61
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1014 KLGSKL-QEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESD 1056
K G K ++ K E+ +DET E ++ E+ED+ D
Sbjct: 59 KYGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDEDDDD 102
Score = 42 (19.8 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 28/104 (26%), Positives = 45/104 (43%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQ 618
E+D +E E+ D P+D S EER+ K E ++Q+ E + FF A +
Sbjct: 250 ESDEDWEEDEDDMNADGDETPSDDS-DIEERR----AK-RGETKNQK--ECREFFNKAKK 301
Query: 619 QLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNS 662
+ R I + V + N I A VA + G+ + N+
Sbjct: 302 EDLLQQARINDKIADFV--LANRPFEIYGAMVAKMKGVTRGTNA 343
Score = 42 (19.8 bits), Expect = 1.2e-60, Sum P(4) = 1.2e-60
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 498 IFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPY--GR---LGNARETDRIPPGGS 552
++PRE + S + ++++ +D S +T P G +GN T +
Sbjct: 120 VYPRENYRREDSETPEPEMKRIRTLSDSSDDEWMTKPRLNGSESPIGNVMRTQMAKRSAA 179
Query: 553 SSGGFLEADSSSKEVENLKMMDKSG 577
S + D S + N + + + G
Sbjct: 180 SKRKIVIDDESEDDFINDEEISEKG 204
Score = 39 (18.8 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 13/74 (17%), Positives = 34/74 (45%)
Query: 994 QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
+D++++ V +K+ + + +E K A E+ ++ ++ P+ +++
Sbjct: 219 KDSETEEVT--MKQGQSLKAAMAKAQKEQKKKAESDEDWEEDEDDMNADGDETPSDDSDI 276
Query: 1054 ESDQAKHYLESNEK 1067
E +AK N+K
Sbjct: 277 EERRAKRGETKNQK 290
Score = 39 (18.8 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 589 RKQLATGKLEAEMQSQETAES 609
+KQL +EA QS+E+ +S
Sbjct: 649 QKQLYDNIVEALQQSEESGDS 669
Score = 38 (18.4 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEK 804
E+DE+D + D P+ + E+
Sbjct: 256 EEDEDDMNADGDETPSDDSDIEER 279
Score = 38 (18.4 bits), Expect = 3.9e-60, Sum P(4) = 3.9e-60
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 545 DRIPPGGSSSGGFLE-ADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQS 603
+ I GS G E ++ S K+ E ++ K G ++ +++Q + + + +
Sbjct: 198 EEISEKGSGKGSEKEESEGSGKDSETEEVTMKQGQSLKAAMAKAQKEQKKKAESDEDWEE 257
Query: 604 QE 605
E
Sbjct: 258 DE 259
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 420 (152.9 bits), Expect = 2.0e-62, Sum P(3) = 2.0e-62
Identities = 124/408 (30%), Positives = 199/408 (48%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVS--VVEKYEP 1047
L +QDA + + + ++K QK+ ++L+ S + F +M +T +S ++ +
Sbjct: 390 LHFLQDASIGELTLIPQCSQKKAQKI-TELRPFNSWEALF-TKMSKTNGLSEDLIWHCKT 447
Query: 1048 AVENEDESDQAKHYLE--SNE--KYYLMAHSIKESVS-EQPTCL-QGGKLREYQMSGLRW 1101
++ D + + E SN+ K M + EQP+ L Q L+ YQ GL W
Sbjct: 448 LIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNW 507
Query: 1102 LVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINF 1161
L ++ + LNGILADEMGLGKT+Q IA + YL + N+ GP W E+N
Sbjct: 508 LALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPASTIDNWLREVNL 566
Query: 1162 WAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEY-LMNKHDRPKLSKIQWHYII 1219
W P + + Y G EER+++ F ++ +NV++TTY + + DR +++ +Y I
Sbjct: 567 WCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAI 626
Query: 1220 IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFS 1279
DEGH +KN L +++RLLLTGTP +F+SS S
Sbjct: 627 FDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST--S 684
Query: 1280 QWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 1339
+ + F S ++ + I Q+++PF+LRR+K +V +LP K +R+
Sbjct: 685 E-IRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIE 739
Query: 1340 RCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVMELRNICNHPYL 1385
C S Q+ L + L SI N K + N +M+LR + NHP L
Sbjct: 740 LCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLL 787
Score = 312 (114.9 bits), Expect = 2.0e-62, Sum P(3) = 2.0e-62
Identities = 68/163 (41%), Positives = 97/163 (59%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK +L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 914 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D + D
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPAD 1015
Score = 55 (24.4 bits), Expect = 8.4e-62, Sum P(4) = 8.4e-62
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
SP SL N++ + + + + K DSS+ P NE
Sbjct: 34 SPISLSAEEENAEGEVSRANTPDSDITEKTEDSSVPETPDNE 75
Score = 52 (23.4 bits), Expect = 2.0e-62, Sum P(3) = 2.0e-62
Identities = 32/135 (23%), Positives = 63/135 (46%)
Query: 149 QSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
Q + S S + + +S+SQ K+ K K+K S + QN ++ + +V
Sbjct: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQK-----FSMKAQNGFNKK--RKKNV 348
Query: 208 VNPRKG-KMNKVDAPG--GFSVKGAEQSNFNMVPSG--GQMEHF--SSLSGNMSSILRVK 260
NP++ + ++ D+ G S+ S ++ G G++ HF + G ++ I +
Sbjct: 349 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS 408
Query: 261 QE-GQNVTE-KPLDS 273
Q+ Q +TE +P +S
Sbjct: 409 QKKAQKITELRPFNS 423
Score = 40 (19.1 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q FN+LK+S+++ E
Sbjct: 745 EKQEQLYLGLFNRLKKSINNLE 766
Score = 38 (18.4 bits), Expect = 8.4e-62, Sum P(4) = 8.4e-62
Identities = 17/71 (23%), Positives = 25/71 (35%)
Query: 551 GSSSGG--FLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAE 608
G + GG + SSS+ E + D H EE + A E Q +
Sbjct: 199 GDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQESIVLK 258
Query: 609 SQAFFTSASQQ 619
Q F + +Q
Sbjct: 259 LQKEFPNFDKQ 269
Score = 37 (18.1 bits), Expect = 2.5e-33, Sum P(4) = 2.5e-33
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1399 KHYLPPIVRLCGKLEMLDR--LLPKLKATDHRVLFFSTMTR 1437
KH+ +RL GK ++ +R L+ + TD + F T+
Sbjct: 891 KHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTK 930
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 413 (150.4 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 105/310 (33%), Positives = 155/310 (50%)
Query: 1081 EQPTCL-QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
EQP+ L Q L+ YQ GL WL ++ + LNGILADEMGLGKT+Q IA + YL + N
Sbjct: 481 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGN- 539
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTY 1198
+GP W E+N W P ++ + Y G EER+++ F ++ +NV++TTY
Sbjct: 540 KGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTY 599
Query: 1199 EY-LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
+ + DR +++ +Y I DEGH +KN L + +RLLLTGTP
Sbjct: 600 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNL 659
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
+F+SS S+ + F S + + I Q+++P
Sbjct: 660 LELMSLLNFVMPHMFSSST--SE-IRRMFSSKTKPADEQSIYEKER----IAHAKQIIKP 712
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVME 1375
F+LRR+K +V LP K +R+ C S Q+ L + L SI N K + N +M+
Sbjct: 713 FILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQ 772
Query: 1376 LRNICNHPYL 1385
LR + NHP L
Sbjct: 773 LRKMANHPLL 782
Score = 311 (114.5 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 68/163 (41%), Positives = 96/163 (58%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 849 GKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 908
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 909 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 967
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D + D
Sbjct: 968 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPAD 1010
Score = 58 (25.5 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SP SL N++ + + + + K DSS+ P NE L
Sbjct: 34 SPISLSAEEENAEGEGSRANTPDSDVTEKTEDSSVPEPPDNERKASL 80
Score = 46 (21.3 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q S FN+LK+S+++ E
Sbjct: 740 EKQEQLYSGLFNRLKKSINNLE 761
Score = 39 (18.8 bits), Expect = 3.4e-60, Sum P(3) = 3.4e-60
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 162 RSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
R +S S+E + + S K+ RGD E + + S+V
Sbjct: 207 RKLSSSSEEDDVNDDQ-SVKQPRGDRGEESNESAEASSNWEKQESIV 252
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 419 (152.6 bits), Expect = 1.6e-61, Sum P(5) = 1.6e-61
Identities = 117/392 (29%), Positives = 179/392 (45%)
Query: 969 KIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ-EAKSMAS 1027
+ID + E+ + ++ VE ++ Q+ + + + E+E +++L + +K M
Sbjct: 426 EIDDEKEEEKQVEQVEQVEQVEQVEQEEGEEEEEEEI-ESEPTIERLIYACECFSKRMLE 484
Query: 1028 HFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQ 1087
N D T + + K ++N +H + V+ QP +
Sbjct: 485 ILSNAEDSTINTTTTAATTSTTTTTTIINNKKDK-KNNNNGPTFSHKL---VA-QPKIIN 539
Query: 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXX 1147
+R YQ+ GL W+ LY ++NGILADEMGLGKTVQ I+L+ ++ E ND GP
Sbjct: 540 K-VMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLAHIKEAYNDNGPHLVVV 598
Query: 1148 XXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL---FKEKIVHQKFNVLLTTYEYLMNK 1204
WE E W P + + Y G ER L K+K + FNV+LTTY L
Sbjct: 599 PATILANWEREFQTWCPSLSIVRYYGNLREREELRYELKKKRPGKDFNVILTTYNLLFAN 658
Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXX 1264
+DR L + + ++I+DE IKN+ K ++ + HRLLLTGTP
Sbjct: 659 NDRGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLL 718
Query: 1265 XXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLK 1324
IF S + + N+ E NGD+ I R+ ++L PF+LRRLK
Sbjct: 719 NFLMPHIFGSVKKDNYLLNQLLEYNGDDCDSA-----------ITRMKKILSPFILRRLK 767
Query: 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEE 1356
V EL KIE + C+ +Q K + E
Sbjct: 768 STVSKELKPKIEHVEICKLPKFQDETYKNIIE 799
Score = 305 (112.4 bits), Expect = 1.6e-61, Sum P(5) = 1.6e-61
Identities = 69/197 (35%), Positives = 114/197 (57%)
Query: 1392 EVDTLIPKHYLPP--IVRLCGKLEMLDRLLPK-LKATDHRVLFFSTMTRLLDVMEDYLTF 1448
E + L K+++P + K L +L K + +VL FS MTR+LD++ED L
Sbjct: 964 EHEDLGDKYWIPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDI 1023
Query: 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 1508
Y + RLDG T +R ++ID F+ +++ +FLLS +GG+G+NL A+ VI +D +
Sbjct: 1024 FGYNFTRLDGSTPVNERQSIIDHFSSKET-IPVFLLSTNSGGLGINLTCANVVIFYDLSF 1082
Query: 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN-N 1567
NPQVD QA+ RAHR+GQ+R+V++ + TV+ + SA K + + + G F+N
Sbjct: 1083 NPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESANQKKKLNDNVLEEGTFNNAE 1142
Query: 1568 TSAEDRR--EYLESLLR 1582
T + + + L+S+ +
Sbjct: 1143 TKLQSKNILKILDSIFK 1159
Score = 55 (24.4 bits), Expect = 1.6e-61, Sum P(5) = 1.6e-61
Identities = 59/299 (19%), Positives = 110/299 (36%)
Query: 137 DYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
D Y++ + SS + S S + R + KK +T SS N
Sbjct: 30 DNYESDASDYSSDNNSDYSDS--EKRRKKRVVNNNNNNTKKTTTVTNTKQSSTQSLKSNN 87
Query: 197 NPQQLDSRNSVVNP--RKGKMNKVDAPGGFSVKGAEQSN---FNMVPSGGQMEHFSSLSG 251
S N +P +K + KV+ + E+ + FN+ P+ +
Sbjct: 88 KKSSTSSNNKKSSPIKKKKQSKKVEEDEEDEDEEDEEDDEDEFNL-PNVSVEQRKKKQKQ 146
Query: 252 NMSSILRVKQEGQNVTEKPL----DSANV-SNSVPRASNSKFPEEVEVSASGQQ-QGNSL 305
++ +E + + ++P S NV +N + ++ S S +Q GN
Sbjct: 147 QEQESSKLLEETEKLLKQPSVIPWTSKNVLNNGTSKDDKKNVDTKLLFSFSSRQPNGNGT 206
Query: 306 SSANGVLASRGTWNQNRAGF--PFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHG 363
+ NG+ + +Q A PF + + P TV+S+ ++ K
Sbjct: 207 NGTNGITSPP---SQRLASIKKPFGGEIKNDYFSKFLYTGPS---TVTSVSSSLSSKPTQ 260
Query: 364 AMPIGPSSYPTGELGSSAL--SPVESQLFS--TNRGDETSAMLSSGKVLEHDGSSNTLS 418
P P++ T + ++A SP + S T T+ ++ K+ D S++T S
Sbjct: 261 QPPTKPTTTTTTDTTTTATPKSPKSPSIKSLPTTTTTTTTTTPTTPKI---DSSTSTPS 316
Score = 54 (24.1 bits), Expect = 1.6e-61, Sum P(5) = 1.6e-61
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 1352 KRVEENLGSIGNSKGRSVHNSV-MELRNICNHPYL 1385
K +E ++ N G+ V N++ M+LR NHP L
Sbjct: 877 KDMELSIKLKSNGSGQFVLNNILMQLRKAANHPLL 911
Score = 46 (21.3 bits), Expect = 1.4e-60, Sum P(5) = 1.4e-60
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 604 QETAESQAFFTSASQQLESASTRGTLAITNP 634
++ +++ F+ +S+Q T GT IT+P
Sbjct: 185 KKNVDTKLLFSFSSRQPNGNGTNGTNGITSP 215
Score = 46 (21.3 bits), Expect = 1.4e-60, Sum P(5) = 1.4e-60
Identities = 20/77 (25%), Positives = 31/77 (40%)
Query: 781 EQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKR----KLLVEQNWILKQQKTKQRMSTCFN 836
++DEED+ D P ++ ++ Q+ KLL E +LKQ S N
Sbjct: 117 DEDEEDEEDDEDEFNLPNVSVEQRKKKQKQQEQESSKLLEETEKLLKQPSVIPWTSK--N 174
Query: 837 KLKESVSSSEDISAKTK 853
L S + + TK
Sbjct: 175 VLNNGTSKDDKKNVDTK 191
Score = 45 (20.9 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
E+ + ++ NL ++ VE + Q + +KLL+ETEK L++
Sbjct: 120 EEDEEDDEDEFNLPNVS-VE-QRKKKQKQQEQESSKLLEETEKLLKQ 164
Score = 43 (20.2 bits), Expect = 7.5e-22, Sum P(3) = 7.5e-22
Identities = 16/82 (19%), Positives = 33/82 (40%)
Query: 1002 NKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHY 1061
N K+T S Q KS + ++ + +K + EDE D+ +
Sbjct: 63 NNNTKKTTTVTNTKQSSTQSLKSNNKKSSTSSNNKKSSPIKKKKQSKKVEEDEEDEDEED 122
Query: 1062 LESNEKYYLMAH-SIKESVSEQ 1082
E +E + + + S+++ +Q
Sbjct: 123 EEDDEDEFNLPNVSVEQRKKKQ 144
Score = 40 (19.1 bits), Expect = 8.3e-22, Sum P(5) = 8.3e-22
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 719 SFSIRDQWKPVSGTDSDRYSLI 740
SF I D+ + + +DS RY I
Sbjct: 670 SFLILDEAQNIKNSDSKRYKNI 691
Score = 39 (18.8 bits), Expect = 1.6e-61, Sum P(5) = 1.6e-61
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 955 VKEFHKRKERIHREKIDR-IQREKINLLK 982
++EF +K+++ +KI + I + LLK
Sbjct: 329 IEEFKDKKKKVENDKITKDILGQVDKLLK 357
Score = 38 (18.4 bits), Expect = 5.4e-33, Sum P(4) = 5.4e-33
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
GGD LID D + +++ G G
Sbjct: 861 GGDDDGLIDLTKTNDEKDMELSIKLKSNGSG 891
Score = 37 (18.1 bits), Expect = 3.9e-22, Sum P(4) = 3.9e-22
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 965 IHREKIDRIQREKINLLKINDVEGYLRMVQDAKSD 999
+++EKI+ I +++ L K L +++A +D
Sbjct: 556 LYKEKINGILADEMGLGKTVQTISLLAHIKEAYND 590
Score = 37 (18.1 bits), Expect = 8.3e-22, Sum P(5) = 8.3e-22
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 938 DEVFKIKRERWRGVNKYVKEFHKRKERIHREK 969
DE +K ER + K E +KE+ +EK
Sbjct: 791 DETYKNIIERSKSQWKLRNELLLKKEKEEKEK 822
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 409 (149.0 bits), Expect = 6.7e-61, Sum P(4) = 6.7e-61
Identities = 104/310 (33%), Positives = 155/310 (50%)
Query: 1081 EQPTCL-QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND 1139
EQP+ L Q L+ YQ GL WL ++ + LNGILADEMGLGKT+Q IA + YL + N
Sbjct: 484 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGN- 542
Query: 1140 RGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTY 1198
+GP W E+N W P ++ + Y G EER+++ F ++ +NV++TTY
Sbjct: 543 KGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTY 602
Query: 1199 EY-LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
+ + DR +++ +Y I DEGH +KN L + +RLLLTGTP
Sbjct: 603 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNL 662
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
+F+SS S+ + F S + + I Q+++P
Sbjct: 663 LELMSLLNFVMPHMFSSST--SE-IRRMFSSKTKPADEQSIYEKER----IAHAKQIIKP 715
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIGN-SKGRSVHNSVME 1375
F+LRR+K +V LP K +++ C S Q+ L + L SI N K + N +M+
Sbjct: 716 FILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQ 775
Query: 1376 LRNICNHPYL 1385
LR + NHP L
Sbjct: 776 LRKMANHPLL 785
Score = 311 (114.5 bits), Expect = 6.7e-61, Sum P(4) = 6.7e-61
Identities = 68/163 (41%), Positives = 96/163 (58%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK L +L +LK RV+ FS T +LD++E L Q+RYLRLDG T +R LI
Sbjct: 852 GKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 911
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ ++V
Sbjct: 912 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 970
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
LV++ + T+EE + + KL + T D + D
Sbjct: 971 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPAD 1013
Score = 59 (25.8 bits), Expect = 6.7e-61, Sum P(4) = 6.7e-61
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQL 201
SP SL N++ + + + + K DSS+ P NE+ L
Sbjct: 34 SPISLSAEEENAEGEVSRANTPDSDVTEKTEDSSVPEPPDNESKASL 80
Score = 46 (21.3 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q S FN+LK+S+++ E
Sbjct: 743 EKQEQLYSGLFNRLKKSINNLE 764
Score = 44 (20.5 bits), Expect = 2.4e-59, Sum P(4) = 2.4e-59
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 163 SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVV 208
S++S++ E + S K+ RGD E + + S+V
Sbjct: 210 SSSSEAYEEDEANDDQSLKKPRGDRREESNESAEASSNWEKQESIV 255
Score = 38 (18.4 bits), Expect = 6.7e-61, Sum P(4) = 6.7e-61
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 833 TCFNKLKESVSSSEDISAKTKSVIE 857
T F K+ + SED+ K+VI+
Sbjct: 424 TLFTKMSKINGLSEDLIWNCKTVIQ 448
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 390 (142.3 bits), Expect = 7.5e-61, Sum P(3) = 7.5e-61
Identities = 121/423 (28%), Positives = 202/423 (47%)
Query: 990 LRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFE-----NEMDET---QTVSV 1041
L +QDA D + + + K QK+ ++L+ S S FE N + E ++
Sbjct: 366 LSFLQDASLDELYLIPHCSHKKAQKI-TELRPFSSWESLFEKMTKSNGLSEDLIWDCQTL 424
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGK-LREYQMSGLR 1100
+++ E ++ ++ ++ L ++ EQP+ + L+ YQ GL
Sbjct: 425 IKEREVVMKLMNKCEEISRTLTKQVTQLTEDGECGWNI-EQPSIMSENLVLKPYQKIGLN 483
Query: 1101 WLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEIN 1160
WL L+ +++N ILADEMGLGKTVQ IA + +L T D GP W E N
Sbjct: 484 WLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVT-GDSGPHLVVVPASTMDNWIREFN 542
Query: 1161 FWAPRIHKIVYCGPPEERRRLFKEKIVHQ--KFNVLLTTYEYLMNK-HDRPKLSKIQWHY 1217
W P ++ ++Y G EER+ L + I+++ +FNV++TTY ++ DR +++ ++
Sbjct: 543 QWCPSMNILLYYGSQEERKHL-RYDILNKVVEFNVIVTTYNCAISSAEDRSLFRRLKLNF 601
Query: 1218 IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 1277
+ DEGH +KN S L + RLLLTGTP +F+SS
Sbjct: 602 AVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST- 660
Query: 1278 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337
S+ + F S ++ + I Q+++PF+LRR+K +V +LP K ++
Sbjct: 661 -SE-IKRLFSSKAKSTDEQTIFEKER----IAHAKQIMKPFILRRVKSEVLKQLPPKQDK 714
Query: 1338 LVRCEASAYQKLLMKRVEENLG-SI-GNSKGRSVHNSVMELRNICNHPYLSQLH--AEEV 1393
+ C+ S Q+ L + L SI K + N +M LR + NHP L + + A+ +
Sbjct: 715 IKFCQMSKKQEQLYSDLLNKLKKSIDATEKNSELCNVMMHLRKMANHPLLHRQYYTADRL 774
Query: 1394 DTL 1396
T+
Sbjct: 775 RTM 777
Score = 317 (116.6 bits), Expect = 7.5e-61, Sum P(3) = 7.5e-61
Identities = 75/197 (38%), Positives = 110/197 (55%)
Query: 1387 QLH--AEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED 1444
+LH E TL ++ GK +L++LL +K RV+ FS T +LD++E
Sbjct: 806 ELHRLCNEFTTLSQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEV 865
Query: 1445 YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504
+L Q+RY+RLDG T +R LID+FN D FIFLLS +AGG+G+NL +A+ VI+
Sbjct: 866 FLRHHQHRYVRLDGKTQISERIHLIDEFNT-DMDIFIFLLSTKAGGLGINLTSANIVILH 924
Query: 1505 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
D D NP D QA+ R HR+GQ ++V V++ T+EE + ++ KL + T
Sbjct: 925 DIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLRLEQDMTTNDTG 984
Query: 1565 DNNTSAEDRREYLESLL 1581
D T D L++ L
Sbjct: 985 DEGTIPLDMATLLKTSL 1001
Score = 65 (27.9 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 39/158 (24%), Positives = 66/158 (41%)
Query: 926 FFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKIND 985
F E + K +LDEV K G+N K K+K KIDR+ + + L +D
Sbjct: 168 FNKEGSSRKRKLDEVPKDSSPVHEGINGQTK---KKK------KIDRVSSDNDSSLSEDD 218
Query: 986 VEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHF-ENEMDETQT-----V 1039
E V+ + + +E + LQ+ EA F E+E D Q V
Sbjct: 219 WEKQEASVKKLQRHFPDLDKEELREVLQEHDWSFHEALEALKLFAEDETDALQNAAKKEV 278
Query: 1040 SVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKE 1077
S +++ + +N+++S AK N + + +K+
Sbjct: 279 SNGKEFSRSNKNDNKSS-AKAKANQNSNKAMAQNGVKK 315
Score = 63 (27.2 bits), Expect = 7.5e-61, Sum P(3) = 7.5e-61
Identities = 33/160 (20%), Positives = 64/160 (40%)
Query: 61 VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIE 120
+ N+ G + K +P S S + + Q ++ V D+ + L+E++ K E
Sbjct: 167 LFNKEGSSRKR-KLDEVPKDS-SPVHEGINGQTK-KKKKIDRVSSDNDSSLSEDDWEKQE 223
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSL------DTRSANSQSQERQKD 174
P + + H SF HE+ +L +T + + +++ +
Sbjct: 224 ASVKKLQRHFPDLDKEELREVLQEH--DWSF-HEALEALKLFAEDETDALQNAAKKEVSN 280
Query: 175 GKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGK 214
GK+ S K + S + N+N + ++N V KGK
Sbjct: 281 GKEFSRSNKNDNKSSAKAKANQNSNKAMAQNGVKKKGKGK 320
Score = 47 (21.6 bits), Expect = 3.5e-59, Sum P(3) = 3.5e-59
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 148 SQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
S++ DH+S S S + QS R+++G S D ++ + + + Q+ +
Sbjct: 72 SENEDHQSKSKFS--STHQQSHPREENGTSDSVTDDSEDDYLAVKRPSASTAQVKDGSKY 129
Query: 208 VNPRKGK 214
N ++ K
Sbjct: 130 KNLQRLK 136
Score = 45 (20.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 825 QKTKQRMSTCFNKLKESVSSSE 846
+K +Q S NKLK+S+ ++E
Sbjct: 722 KKQEQLYSDLLNKLKKSIDATE 743
Score = 42 (19.8 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 37/150 (24%), Positives = 53/150 (35%)
Query: 702 FGHSGASG-----NQHANSHLSSFSIRDQWKPVSGTDSDRYSL-IPVKDASGMLRHTSQD 755
FG GAS N H++S + K V+ + + D+ Q
Sbjct: 21 FGEKGASSRPSTPNSQLEDHVTSIPETPEAKRVNNPSLFKKDKGVSFLDSDSE-NEDHQS 79
Query: 756 DPKFSDG-SRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKL 814
KFS ++ P + NG S + D ED L P A S + D K K
Sbjct: 80 KSKFSSTHQQSHPREE---NGTSDSVTDDSEDDYLAVKRPSA-----STAQVKDGSKYKN 131
Query: 815 LVEQNWILKQQKTKQRMSTCFNKLKESVSS 844
L I +Q + + KL ES S+
Sbjct: 132 LQRLKEIFPKQNNDELL-----KLIESTST 156
Score = 42 (19.8 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 35/163 (21%), Positives = 61/163 (37%)
Query: 154 ESPSSLDTR-SANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRK 212
ES S+LD +A ++ +K DSS HE N ++ + V +
Sbjct: 152 ESTSTLDGAVAAGVVLFNKEGSSRKRKLDEVPKDSSPVHEGINGQTKKKKKIDRVSSDND 211
Query: 213 GKMNKVD-APGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILR-VKQEGQNVTEKP 270
+++ D SVK Q +F + E + L +K ++ T+
Sbjct: 212 SSLSEDDWEKQEASVKKL-QRHFPDLDKEELREVLQEHDWSFHEALEALKLFAEDETDAL 270
Query: 271 LDSAN--VSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGV 311
++A VSN + ++K + A Q N + NGV
Sbjct: 271 QNAAKKEVSNGKEFSRSNKNDNKSSAKAKANQNSNKAMAQNGV 313
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 656 (236.0 bits), Expect = 2.3e-60, P = 2.3e-60
Identities = 175/530 (33%), Positives = 270/530 (50%)
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136
+S QP + GG++ +YQ GL WL + Q N ILADEMGLGKT+QVI L+ L++
Sbjct: 592 KSREAQPRIMTGGEIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQVIGLLATLVQD 651
Query: 1137 KNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ-----KF 1191
+ PF W E+ W P + + Y G R+ + ++ + +
Sbjct: 652 -HKCWPFLIVVPNSTCPNWRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFIRGDPDLRC 710
Query: 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGT 1251
+V++T+YE +++ R LS+I W +I+DEG R+K+ ++ L + ++L+TGT
Sbjct: 711 HVVITSYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSKMKFPFKVLMTGT 770
Query: 1252 PXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNK-PFESNGDNSPDXXXXXXXXXXXIINR 1310
P + N++++ FN F N+ + I
Sbjct: 771 P------------------LQNNTKEL---FNLLQFCDQSKNAEELEEKYGTLSKENIPE 809
Query: 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV--------------EE 1356
LH+++RPF LRR K +V LP ++ +V S QK L K + E
Sbjct: 810 LHELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQRNE 869
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD 1416
+ ++ +++N +M+LR HP++ EE T P+ +V GKL++L+
Sbjct: 870 EDQPLKQTERHNLNNILMQLRKCLCHPFIFSKAIEE-RTDDPEVAHRNLVDAAGKLQLLE 928
Query: 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476
+LPKL+A HRVL FS LDVMED+L + RLDG + ++ +ID +N ++
Sbjct: 929 LMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDDYNAEN 988
Query: 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 1536
SP+F FLLS R+GGVG+NL ADTVII D D+NP D+QA +RAHRIGQK VLV +
Sbjct: 989 SPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLVFQLMI 1048
Query: 1537 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK 1586
+ EE++ K+ + + I D + +D E LES+LR K
Sbjct: 1049 RGSAEEKIMQIGRKKMVLDHVLI-----DRMAAEDDDGEDLESILRHGAK 1093
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 650 (233.9 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 154/386 (39%), Positives = 214/386 (55%)
Query: 1200 YLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXX 1259
Y M ++ K W Y++IDE HRIKN KL+ + +++++RLLLTGTP
Sbjct: 250 YEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHE 309
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
+FNS+ DF WF+ GD ++ RLH VLRPF+
Sbjct: 310 LWSLLNFLLPDVFNSASDFDSWFDT--NCLGDQK-------------LVERLHAVLRPFL 354
Query: 1320 LRRLKHKVENELPEKIE-----RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVM 1374
LRR+K +VE LP K E L + + Y ++LMK ++ L S G + N +M
Sbjct: 355 LRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDI-LNSAGKMDKMRLLNILM 413
Query: 1375 ELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFST 1434
+LR CNHPYL AE +L ++ GK+ LD+LLPK++ RVL FS
Sbjct: 414 QLRKCCNHPYLFD-GAEPGPPYTTDTHL--VIN-SGKMVALDKLLPKVQEQGSRVLIFSQ 469
Query: 1435 MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN 1494
MTR+LD++EDY ++ + Y RLDG+T R ID FN +S FIF+LS RAGG+G+N
Sbjct: 470 MTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGIN 529
Query: 1495 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554
L AD VI++D+DWNPQVDLQA RAHRIGQ++ V V R T TVEE++ AE KL +
Sbjct: 530 LATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRL 589
Query: 1555 ANQSITAGFFDNNTSAEDRREYLESL 1580
+ I G + + + E L+ +
Sbjct: 590 DSIVIQQGRLIDQQNKLGKDEMLQMI 615
Score = 464 (168.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 122/398 (30%), Positives = 194/398 (48%)
Query: 997 KSDRVNK---LLKETE---KYLQKLGSKLQEA--KSMASHFENEMDETQTV-SVVEKYEP 1047
K+DR N+ LLK+TE ++Q K + K + DE Q + SV +
Sbjct: 48 KTDRANRFEFLLKQTELFAHFIQPASQKSPTSPLKVKMGRPRIKQDEKQNLLSVGDNRHR 107
Query: 1048 AVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
E E++ + L + K A ++ E P+ ++ G LR+YQ+ GL W++SLY
Sbjct: 108 RTEQEEDEE----LLSESRK----ADNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLYE 159
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIH 1167
N +NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 160 NGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLK 219
Query: 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227
+ G +ER ++ ++ +++V +T+YE ++ ++ K W Y++IDE HRIK
Sbjct: 220 AVCLIGNKDERAAFIRDVMMPGEWDVCVTSYEMVIR--EKSVFKKFNWRYLVIDEAHRIK 277
Query: 1228 NASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFE 1287
N KL+ + +++++RLLLTGTP +FNS+ DF WF+
Sbjct: 278 NEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDT--N 335
Query: 1288 SNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 1347
GD ++ R+ + V + L K E ++ + ++ R Y
Sbjct: 336 CLGDQKL-VERLHAVLRPFLLRRI----KAEVEKSLPPKKEVKIYLGLSKMQR---EWYT 387
Query: 1348 KLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
++LMK ++ L S G + N +M+LR CNHPYL
Sbjct: 388 RILMKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYL 424
Score = 44 (20.5 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 1046 EPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
+P E + ++D+A + ++ L AH I+ + + PT
Sbjct: 40 DPEYEEKRKTDRANRFEFLLKQTELFAHFIQPASQKSPT 78
Score = 41 (19.5 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 19/99 (19%), Positives = 45/99 (45%)
Query: 1390 AEEVDTLIPKH---YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446
A EV+ P+ Y C +L+ +++++ +++ + R+ ++ + LDV
Sbjct: 854 AREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDVK--IA 911
Query: 1447 TFKQ-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484
+K + LR+ T+ G + +++ F I +L
Sbjct: 912 RYKAPFHQLRIQYGTNKGKN------YTEEEDRFLICML 944
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 660 (237.4 bits), Expect = 1.0e-58, Sum P(3) = 1.0e-58
Identities = 183/520 (35%), Positives = 265/520 (50%)
Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
QP+ ++GG L YQ+ GL WL + ILADEMGLGKTVQVI+ I L ++
Sbjct: 547 QPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFY-RHKCF 605
Query: 1142 PFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKE-KIVHQKFNVLLTTYEY 1200
P WE E+ WAP + V G E+ R L ++ ++++QK ++T+
Sbjct: 606 PVLVIVPHATVANWERELKKWAPFLQINVLVGS-EKNRSLVRDYRLINQKDPKHVSTHVL 664
Query: 1201 LMNKHDRPK----LSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
+++ + + L K QW +I+DEG R+KN L L +S +LLLTGTP
Sbjct: 665 VISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNN 724
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
+FN Q+ N P + N + + + LHQ+L+
Sbjct: 725 VRE-----------LFN----LLQFLN-PMKIN---AAELEKRYSIIDTEKVTELHQILK 765
Query: 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLG------------SIGN 1363
PF LRR+K +V + P K+E ++ + QK L K + +NL S G
Sbjct: 766 PFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGG 825
Query: 1364 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKL 1422
+ S++N +M+LR HPY+ E D +P + + K +L L+PKL
Sbjct: 826 QRTTSLNNILMQLRKTLAHPYIYSPDIE--DRNLPYELAMRSLEEASCKFLILRLLVPKL 883
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
HR+L FS + LD++ED+ +K Y R DG +S +R + ID FN +S F
Sbjct: 884 ITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCF 943
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542
LLS RAGGVG+NL +ADTVII D D+NP D+QA ARAHR GQK+ VLV T +VEE
Sbjct: 944 LLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEE 1003
Query: 1543 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
++ +A+ KL V + I N+ S +D LES+LR
Sbjct: 1004 KIIQNAQKKL-VLDHLIVESLDQNHNSEKD----LESILR 1038
Score = 45 (20.9 bits), Expect = 1.0e-58, Sum P(3) = 1.0e-58
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 155 SPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNE 196
+PS + +A+ + D K +++ + S+SH N+
Sbjct: 129 NPSFVSDETASDSATSSSSDTNKKVNRKEHNELSLSHLSFND 170
Score = 41 (19.5 bits), Expect = 2.7e-58, Sum P(3) = 2.7e-58
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 738 SLIPVKDASGMLRHTSQDD-PKFSDGSRTIPV--DNSVR---NGISLTTEQDEEDKS 788
S + VK +G+ +D+ K+ +G + V + R +G +T++DEE+K+
Sbjct: 41 STLSVKFLAGVEALIKKDELDKYKNGKACLRVWLKHKSRKRYHGYMTSTDKDEEEKN 97
Score = 40 (19.1 bits), Expect = 1.0e-58, Sum P(3) = 1.0e-58
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 795 PAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLK 839
P PK T +W ++ L+E WI K + F L+
Sbjct: 499 PPPKETDRNRWKAWLKGYSDLLECLWIEKAPTASINIDLPFTNLE 543
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 636 (228.9 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 185/613 (30%), Positives = 294/613 (47%)
Query: 997 KSDRVNK---LLKETEKYLQKLGSKLQEAKSMASHFEN-----EMDETQTVSVVEKYEPA 1048
K+DR + LLK+TE + + Q++ + + + + D+ Q++ Y
Sbjct: 88 KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDDKQSLISAGDYRHR 147
Query: 1049 VENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN 1108
E E D+ L + K + ++ VS P+ ++GG LR+YQ+ GL WL+SLY N
Sbjct: 148 -RTEQEEDE--ELLSESRKTSNVC--VRFEVS--PSYVKGGPLRDYQIRGLNWLISLYEN 200
Query: 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHK 1168
+NGILADEMGLGKT+Q IAL+ YL +N GP W +E W P +
Sbjct: 201 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRV 260
Query: 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228
I + G + R +++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN
Sbjct: 261 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKN 318
Query: 1229 ASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFES 1288
KL+ ++ ++S++RLLLTGTP +FNS++DF WF+
Sbjct: 319 EKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NC 377
Query: 1289 NGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQK 1348
GD ++ R+ + V + L K E ++ + ++ R +
Sbjct: 378 LGDQKL-VERLHAVLKPFLLRRI----KTDVEKSLPPKKEIKVYLGLSKMQR----EWFV 428
Query: 1349 LLMKRVEENLGSIGNSKGRSVHNSVMELRNI--CNHPYLSQLHAEEVDTLIPKHYLPPIV 1406
+L + EN + + + N +M LR C + Q + V + H +
Sbjct: 429 ILAFFISENSNNSNKNHKLDILNVIMLLREAKCCGASFCLQKKKQNVAYINKVH-----I 483
Query: 1407 RLCGK--LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED-----YLTFKQYRYLRLDGH 1459
C K + MLD K + HR + L E+ ++ K Y ++ D
Sbjct: 484 NYCSKGIISMLDYC--KTEIEQHRCRCLCILNPLNTFFENGFLQIHIKHKPYSAIQNDPF 541
Query: 1460 TSGGD-----------RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 1508
D + I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DW
Sbjct: 542 PWNEDDTKYLFVYIIYKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDW 601
Query: 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNN 1567
NPQVDLQA RAHRIGQK+ V V R T TVEE++ AE KL + + I G D
Sbjct: 602 NPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ 661
Query: 1568 TSAEDRREYLESL 1580
++ + E L+ +
Sbjct: 662 SNKLAKEEMLQMI 674
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 635 (228.6 bits), Expect = 9.1e-57, Sum P(2) = 9.1e-57
Identities = 182/634 (28%), Positives = 314/634 (49%)
Query: 939 EVFKIKRERWR--GVNK-YVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQD 995
E+ I +ERW G K Y K + K++ R++I ++ ++K ++ +E Y +
Sbjct: 654 ELLNIHKERWTDDGNEKVYQKRLLEWKKKKIRDRIKKMDQKK----RLEVLEKYTDNLMK 709
Query: 996 AKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENE-MDETQTVSVVEKYEPAVENEDE 1054
++ N +E E L L E + + NE +DE ++ E +E E
Sbjct: 710 NNNNNNNNNNEENEDELYPSQYDLAEDE----YLNNEKLDEEAVLNKNNNNE--IEKIFE 763
Query: 1055 SDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGIL 1114
++ K E+ E+ + I E+ + P + L EYQ++ +RWL L+ + GI+
Sbjct: 764 EEEEK---EAEEEIIGDDYEIDENF-KIPFDIYKN-LFEYQVTCVRWLYELHCQETGGIV 818
Query: 1115 ADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAP--RI---HKI 1169
DEMGLGKTVQ+++ + L ++ GP W E + W P R+ H
Sbjct: 819 GDEMGLGKTVQIVSFLASLHYSRRLGGPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSS 878
Query: 1170 VYCGPPEERRRLFKEKIVH---QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI 1226
G + KE IV +K ++LLTT++ + + ++ L K W Y+I+DEGH+I
Sbjct: 879 GSGGGGNDGSD--KEDIVKKIAEKGHILLTTFDSI--RINQEILLKYHWEYVILDEGHKI 934
Query: 1227 KNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPF 1286
+N ++ K Q+ HR++L+G+P + F F+ P
Sbjct: 935 RNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSLPI 994
Query: 1287 ESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAY 1346
G + + L ++ P++LRR+K V LP K E+++ C + +
Sbjct: 995 SVGGFANASPIQVQAAYKCAVA--LRDLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTPF 1052
Query: 1347 Q-KLLMKRVEEN-LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404
Q KL ++ ++ N + S+ + + +++ + L+ ICNHP + + A + D P Y
Sbjct: 1053 QEKLYLEFLDSNDIKSVLDGRRNALYG-IDILKKICNHPDILHMDASDEDR--PHDY--G 1107
Query: 1405 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGG 1463
+ KL++++ +LP +VL F ++LD++E Y+ Q+ YLR+DG TS
Sbjct: 1108 NIERSAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIR 1167
Query: 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523
R L+++FN D FIFLL+ + GG+G+NL A+ VI+FD DWNP D+QA+ R +RI
Sbjct: 1168 QRQCLVEQFNI-DPSLFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRI 1226
Query: 1524 GQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQ 1557
GQK+ V + R T+ T+EE++ +K + N+
Sbjct: 1227 GQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNK 1260
Score = 47 (21.6 bits), Expect = 8.4e-56, Sum P(3) = 8.4e-56
Identities = 46/190 (24%), Positives = 84/190 (44%)
Query: 648 ANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGA 707
A++ S+ K S++ S +QN++ T + + + D + K G S +
Sbjct: 255 ASLISLITFEKKKLSDLKSQEK-STQNKIIEIKEKIKTDREKRINDQ---KRKPDG-SNS 309
Query: 708 SGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIP 767
SG + L S+ D+ S T+S+R LI +G + S+ K + +TI
Sbjct: 310 SGENKSIGELPLPSLFDKAFGFSTTESERDRLI----RTGKITPFSEMHSKTN--KKTIV 363
Query: 768 VDNSVRNGISLT----TEQDEEDKSLHTDSPPAPKYTMS--EKWI--MDMQKRKLLVEQN 819
+D+ V +L TEQ+E+++ K + +K D +K+K+L E+
Sbjct: 364 LDDVVDITKTLDQEKETEQNEKNQGGGGGGSGGSKIFLKPIKKTTNRFDAKKKKVLTEKE 423
Query: 820 WILKQQKTKQ 829
KQ+K K+
Sbjct: 424 K-KKQKKMKK 432
Score = 46 (21.3 bits), Expect = 9.1e-57, Sum P(2) = 9.1e-57
Identities = 23/114 (20%), Positives = 49/114 (42%)
Query: 746 SGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYT---MS 802
+G+ ++ S+ DP S+ +T + N + ++SL +Y+ +
Sbjct: 138 NGLPKNFSRFDPGNSNKFKTTTTTTTSSNNNRFNNNNNNNNQSLDLSKLGVTQYSSNYVE 197
Query: 803 EKWIMDMQKRKLLVEQNWI-LKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSV 855
K I + K L E N + +K +K + +S L ++ + +I+ K K +
Sbjct: 198 NKVIHKIDKEILYNEINELDIKLKKIRNDISEAEQFLFKN--NEREINEKNKDI 249
Score = 46 (21.3 bits), Expect = 1.9e-55, Sum P(4) = 1.9e-55
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 559 EADSSSKEVENLKMMDKSGPPADHSIHAEER-KQLATGKLEAEMQSQETAESQAFFTSAS 617
E ++ E++ K + PP S + + K+++T K +++ ++ + S S
Sbjct: 472 EEENEEDEIDIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDDDLLNLDISLS 531
Query: 618 QQLESASTRGTLAI-TNPVNDVEN 640
++ + + R L TN D +N
Sbjct: 532 GRIRTPTNRLNLTTDTNKEKDDDN 555
Score = 45 (20.9 bits), Expect = 5.2e-56, Sum P(3) = 5.2e-56
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 145 HRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISH-EPQNENPQQL 201
+ ++ + + +D + K KK+++K K+ + S +P+N N L
Sbjct: 466 YNNNNNEEENEEDEIDIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDDDL 523
Score = 45 (20.9 bits), Expect = 5.2e-56, Sum P(3) = 5.2e-56
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 781 EQDEEDKSLHTDSPPAPKYTM-SEKWIMDMQKR---KLLVEQNWILKQQKTKQRMSTCFN 836
E DE++K + D P + E+W D ++ K L+E W K++K + R+
Sbjct: 638 EDDEDEKIDYDDRIPKELLNIHKERWTDDGNEKVYQKRLLE--W--KKKKIRDRIKKMDQ 693
Query: 837 KLKESV 842
K + V
Sbjct: 694 KKRLEV 699
Score = 41 (19.5 bits), Expect = 8.4e-56, Sum P(3) = 8.4e-56
Identities = 15/95 (15%), Positives = 40/95 (42%)
Query: 123 TSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKR 182
TSS P + ++ + + ++ + ++ + ++ + + + Q++QK+G + R
Sbjct: 87 TSSYPTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNKSRASLQDQQKNGLPKNFSR 146
Query: 183 KRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNK 217
D S++ + S N+ N N+
Sbjct: 147 F--DPGNSNKFKTTTTTTTSSNNNRFNNNNNNNNQ 179
Score = 37 (18.1 bits), Expect = 4.9e-55, Sum P(4) = 4.9e-55
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 146 RSSQSFDHESPSSLDT-RSANSQSQERQKDGKKASTKRK 183
+S+Q+ E + T R Q+R+ DG +S + K
Sbjct: 276 KSTQNKIIEIKEKIKTDREKRINDQKRKPDGSNSSGENK 314
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 338 (124.0 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 92/281 (32%), Positives = 135/281 (48%)
Query: 1079 VSEQPTCLQGG-KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK 1137
V+EQP L +L+ YQ+ G+ WL LY +L+GILADEMGLGKT QV+A L+E +
Sbjct: 537 VTEQPKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLE-Q 595
Query: 1138 NDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ--KFNVLL 1195
GP W E+ + P + Y G +ER + +E I K+++L+
Sbjct: 596 GHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANI-REAIEENEIKYDILV 654
Query: 1196 TTYEYLMN-KHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXX 1254
TTY+ N K DR L + + DEGH +KN + L + ++ RLLLTGTP
Sbjct: 655 TTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQ 714
Query: 1255 XXXXXXXXXXXXXXXXIFNSS-EDFSQWFN-KPFESNGDNSPDXXXXXXXXXXXIINRLH 1312
+F+S +D F KP + D I+R
Sbjct: 715 NNLKELVSLLAFILPNMFDSDMDDLDVIFKAKP-------TADADIEQALLSKQRISRAK 767
Query: 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKR 1353
++ PFVLRR K++V N+LP+K + + C+ S Q + R
Sbjct: 768 TMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNR 808
Score = 324 (119.1 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 72/179 (40%), Positives = 111/179 (62%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK+ +L LLPK+K R+L FS T++LD++E L + Y+RLDG T R +I
Sbjct: 924 GKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDII 983
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
D+F++++ +FLLS +AGG G+NL A+ VI++D +NP DLQA+ RAHR+GQ R+V
Sbjct: 984 DQFHKEED-VTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREV 1042
Query: 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 1588
V+R T T+EE ++ A KL + + S+++ +DR E E L+++ EE
Sbjct: 1043 TVIRLITDNTIEEYIQKLANTKLAL-DMSLSS-------DGKDREEIGERLVQDMLDEE 1093
Score = 76 (31.8 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 59/244 (24%), Positives = 91/244 (37%)
Query: 77 LPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGA-- 134
LP S + + D+ + + + Q + V S+ GL S P + PPV S A
Sbjct: 2 LPYNS-NYLSDNGKRKFSDENPQ-SEVYGSSQTGLPS---SYGNPQSYGTPPVQQSSAMY 56
Query: 135 GHDYYQASGTHRSSQS--FDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHE 192
G + G + +S++ F + S + ++ S +D A+ G S +
Sbjct: 57 GVNNSMGGGMYNTSENTQFMNTDYSQTSSYASTPMSNAYSRDAP-AAINNNFGYSYVGQS 115
Query: 193 PQ---NENPQQLDSRNSVVNPRKGKMNKVDA-PGGFSVKGAEQSNFNMVPSGGQMEHFSS 248
Q + NP L S N+ P G + P G+ G +P GG H+SS
Sbjct: 116 SQPVPSYNP--LPSYNTASLPNAGIPAAMPGMPSGYP--GTVP-----IPQGGYNAHYSS 166
Query: 249 LSGNMSSILRVKQEGQNVTEKPLDSAN-VSNSVPRASNSKFPEEVEVSASGQQQGNSLSS 307
N I V + P N V S R+++ SA Q + SS
Sbjct: 167 PYNNGYPIGAVNPTSAIPAQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRSSS 226
Query: 308 ANGV 311
AN V
Sbjct: 227 ANPV 230
Score = 53 (23.7 bits), Expect = 2.7e-54, Sum P(3) = 2.7e-54
Identities = 56/223 (25%), Positives = 85/223 (38%)
Query: 195 NENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSN--FNMVPS-GGQMEHFSSLSG 251
+ENPQ +S + G + P + +QS+ + + S GG M + S +
Sbjct: 19 DENPQSEVYGSS----QTGLPSSYGNPQSYGTPPVQQSSAMYGVNNSMGGGMYNTSENTQ 74
Query: 252 NMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGV 311
M++ + + P+ +A S P A N+ F S GQ + S N
Sbjct: 75 FMNTDY---SQTSSYASTPMSNA-YSRDAPAAINNNFG----YSYVGQSS-QPVPSYNP- 124
Query: 312 LASRGTWNQNRAGFPFERSQVPR-FPGNMMIETPMQQPTVSSLGANAF--GKVH--GAMP 366
L S T + AG P +P +PG + I SS N + G V+ A+P
Sbjct: 125 LPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGYNAHYSSPYNNGYPIGAVNPTSAIP 184
Query: 367 IGPSSYPTGEL---------GSSALSPVESQLFSTNRGDETSA 400
P + P + SSA S S ST R +SA
Sbjct: 185 AQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRSSSA 227
Score = 51 (23.0 bits), Expect = 8.8e-27, Sum P(3) = 8.8e-27
Identities = 32/159 (20%), Positives = 60/159 (37%)
Query: 949 RGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKET 1008
R N+ + + K+ + I K+ Q E N LR +D K ++ +K +E+
Sbjct: 777 RRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLR--RDDKRNKRSKNDEES 834
Query: 1009 EKYLQKLGSKLQEAKSMASH---FENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESN 1065
+ G L + + A+H F D+ EK + ++ + +Q Y +N
Sbjct: 835 DGKSLSAGHVLMQLRKAANHALLFRKFYDD-------EKLKQMAKDIMQEEQ---YKNAN 884
Query: 1066 EKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVS 1104
E+Y + C L+ Y + W+ S
Sbjct: 885 EQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDDPWMDS 923
Score = 50 (22.7 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 13/66 (19%), Positives = 33/66 (50%)
Query: 1507 DWNPQVDLQAQARAHRI-GQKRDVL-VLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
D + + +++ + ++ + G +++ ++ E VQT S++ N+S+ +G
Sbjct: 1149 DGDEKANIKTEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVLSGHL 1208
Query: 1565 DNNTSA 1570
D +T A
Sbjct: 1209 DLDTEA 1214
Score = 43 (20.2 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSI 1075
GS+ + A + ENE+ V+ Y+ A N+++ KH + Y H +
Sbjct: 631 GSQQERANIREAIEENEIKYDILVTT---YQLATNNKEDRSFLKHQ-NFDVCVYDEGHYL 686
Query: 1076 KESVSEQ 1082
K +SE+
Sbjct: 687 KNRMSER 693
Score = 39 (18.8 bits), Expect = 7.7e-53, Sum P(3) = 7.7e-53
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 235 NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSV--PRASNSKFP 289
N++PS + SS S R Q ++ + P+ + V+N++ P A + P
Sbjct: 194 NVLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAPPVELP 250
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1026 ASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNE-KYYLM 1071
+S EN + E + EP ++ E + +E NE KY ++
Sbjct: 607 SSTLENWLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYDIL 653
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 614 (221.2 bits), Expect = 8.0e-56, P = 8.0e-56
Identities = 164/491 (33%), Positives = 248/491 (50%)
Query: 1078 SVSEQPTCLQGG---KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134
++ +QP + G +LR+YQ++GL WL + + ILADEMGLGKT+Q I+ + YL
Sbjct: 140 ALKKQPFYIGGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 199
Query: 1135 ETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ----- 1189
GPF W+ EI WAP+++ +VY G R + + +H
Sbjct: 200 HEHELYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRL 259
Query: 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 1249
KFN+LLTTYE L+ D+ L + W +I IDE HR+KN L L ++S+HRLL+T
Sbjct: 260 KFNILLTTYEILLK--DKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLIT 317
Query: 1250 GTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIIN 1309
GTP F E FS W + FE +
Sbjct: 318 GTPLQNSLKELWSLLH------FIMPEKFSSW--EDFEEEHGKGREFGYAS--------- 360
Query: 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSIGN-SKGR 1367
LH+ L PF+LRR+K VE LP K+E+++R E SA QK K + N ++ SKG
Sbjct: 361 -LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGS 419
Query: 1368 SVH--NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 1425
+ N +MEL+ CNH YL + ++ + + L ++R GKL +LD+LL +L+
Sbjct: 420 TSGFLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRER 478
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP----FFI 1481
+RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F
Sbjct: 479 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSENLTSLFC 538
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
+ L+ ++ + +L+ + I WNP + A + I K+ V + R T +VE
Sbjct: 539 YHLTRKSLTLKTHLRNGHNIDIIAFFWNPCSCINACFLSLNILTKKQVNIYRLVTKGSVE 598
Query: 1542 EQVRASAEHKL 1552
E + A+ K+
Sbjct: 599 EDILERAKKKM 609
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 349 (127.9 bits), Expect = 7.2e-55, Sum P(3) = 7.2e-55
Identities = 100/327 (30%), Positives = 152/327 (46%)
Query: 1072 AHSIKESVSEQPTCL-QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI 1130
+ S K QP + + K++ YQ+ G+ WL L+ N+L+ ILAD+MGLGKT QVIA +
Sbjct: 544 SRSRKARFISQPGIMAEDLKMKNYQIVGINWLSLLFENELSCILADDMGLGKTCQVIAFL 603
Query: 1131 CYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQK 1190
+L E K +GP W E + P + + Y R ++ +E+I +
Sbjct: 604 AHLYE-KGIKGPHLVVVPSSTIENWLREFQKFCPTLSVMPYYADQNVRAQI-REQIEGNR 661
Query: 1191 --FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLL 1248
NV++TTY K D L + + + DEGH +K+++ L L ++ RLLL
Sbjct: 662 DDINVVITTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLL 721
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP +F +D Q+ F SN + D I
Sbjct: 722 TGTPLQNNLQELASLLGFILPKVFQERKDDLQYI---F-SNKAKTVDESHSALLSAQRI- 776
Query: 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI------G 1362
R +L+PFVLRR KH+V +LP KI R+ CE +A Q+ + + + + + G
Sbjct: 777 ERAKSMLKPFVLRRKKHQVI-DLPAKISRVEYCEMNAAQREIYEHEKNEVKKLLEDRAAG 835
Query: 1363 NSKGRSVHNSVMELRNICNHPYLSQLH 1389
G N +M+LR HP L + H
Sbjct: 836 KKTGNKSANILMKLRQAAIHPLLHRRH 862
Score = 313 (115.2 bits), Expect = 7.2e-55, Sum P(3) = 7.2e-55
Identities = 69/154 (44%), Positives = 102/154 (66%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
GK++ L LL + K RVL FS +D++E L + +++RLDG TS DR +++
Sbjct: 926 GKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQSIM 985
Query: 1470 DKFNQQ-DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528
D F++ D P +FLLS +AGG G+NL A+ VIIFD+ +NPQ D+QA+ RAHR+GQ R+
Sbjct: 986 DTFHENTDIP--VFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTRE 1043
Query: 1529 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
V V+R T T+EEQ+ A + KL + +Q++ AG
Sbjct: 1044 VEVIRLVTKDTIEEQIYALGQTKLAL-DQAV-AG 1075
Score = 55 (24.4 bits), Expect = 7.2e-55, Sum P(3) = 7.2e-55
Identities = 25/99 (25%), Positives = 39/99 (39%)
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYL------RMVQ--DAKS--DRVNKLLKETEKYL 1012
+R+ +E R Q L + D++ Y RM++ KS D V LL + Y
Sbjct: 196 KRVRQEGPSRAQPVDTQSLSLQDIDDYQVRIKVERMLKVLPRKSVHDCVQALLAKKGSYE 255
Query: 1013 QKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVEN 1051
L L + H ++ DE T+ PA +N
Sbjct: 256 DALEC-LASTEDQNGHADSSEDELSTIKKTSPVAPAKQN 293
Score = 52 (23.4 bits), Expect = 6.6e-54, Sum P(4) = 6.6e-54
Identities = 65/289 (22%), Positives = 104/289 (35%)
Query: 39 HMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGD-------SSTA 91
H G + Y+ I+ L +++ S LT +QI D SS
Sbjct: 17 HSTPGGMDEDGEYETIATLPVNPAQNTLLATQSMTPSSQRLTQPTQIVDVPYTSKGSSVV 76
Query: 92 QCAGSSS--QVAGVVKDSKAGLAENEMSKIEPFTSSR--PPVAPSGAGHDYYQASGTHRS 147
Q A SS + + S AG +S + + +R PP A D T+R
Sbjct: 77 QVAASSPLRPASSPSRPSPAG--PGRLSSLMAPSGTRFCPP-AKRAPLIDLEDDGPTYRG 133
Query: 148 SQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSV 207
S D + S D + A S+ +K A + K SS ++P + S
Sbjct: 134 GSS-DDDIQMSTDIKPATFTSRNPEKS--TAIDRFKEITSSAIYDPSSTKRAA-----SQ 185
Query: 208 VNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVT 267
++P P G +VK Q PS Q SLS +V+ + + +
Sbjct: 186 MDP---------TPKGVAVKRVRQEG----PSRAQPVDTQSLSLQDIDDYQVRIKVERML 232
Query: 268 EKPLDSANVSNSVPR--ASNSKFPEEVEVSASGQQQGNSLSSANGVLAS 314
K L +V + V A + + +E AS + Q S+ L++
Sbjct: 233 -KVLPRKSVHDCVQALLAKKGSYEDALECLASTEDQNGHADSSEDELST 280
Score = 42 (19.8 bits), Expect = 6.6e-54, Sum P(4) = 6.6e-54
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 739 LIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPK 798
L +D +G H + + S +T PV + +N + +DK +P PK
Sbjct: 261 LASTEDQNG---HADSSEDELSTIKKTSPVAPAKQN---IKARGRIQDK---WTAPNLPK 311
Query: 799 YTMSEKWIMDMQKRKLLV 816
T+ ++ D + RK L+
Sbjct: 312 STLQKQPEEDSRPRKRLI 329
Score = 39 (18.8 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1556 NQSITAGFFDNNTSAEDRREYLES 1579
NQ + D TS EDR+ +++
Sbjct: 964 NQHLKFVRLDGTTSVEDRQSIMDT 987
Score = 37 (18.1 bits), Expect = 5.5e-53, Sum P(3) = 5.5e-53
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 140 QASGTHRSSQSFDHESPSSLDTRSANSQSQE 170
+ SG+H S PS D+ S+S++
Sbjct: 518 EPSGSHDSGIGTPASQPSDEDSDGPGSRSRK 548
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 603 (217.3 bits), Expect = 8.6e-55, Sum P(3) = 8.6e-55
Identities = 157/505 (31%), Positives = 251/505 (49%)
Query: 1062 LESNEKYYLMAHSIKESVSEQPTCLQGG----KLREYQMSGLRWLVSLYNNQLNGILADE 1117
L+ EK + +ES +E G KL +YQ +G+RWL L+ Q GIL DE
Sbjct: 470 LQDKEKCLKLEDDSEESDAEFDDFKMPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDE 529
Query: 1118 MGLGKTVQVIALICYLMETK------NDR----GPFXXXXXXXXXXGWESEINFWAP--R 1165
MGLGKT+Q+IA + L +K N R GP W E + W P R
Sbjct: 530 MGLGKTIQIIAFLAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFR 589
Query: 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHR 1225
+ + G +++ I H +L+T+Y Y+ D +S+ WHY+I+DEGH+
Sbjct: 590 VAILHETGSYTQKKEKLIRDIAHCH-GILITSYSYIRLMQD--DISRHDWHYVILDEGHK 646
Query: 1226 IKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKP 1285
I+N + + K +++ HR++L+G+P + F + F+ P
Sbjct: 647 IRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVP 706
Query: 1286 FESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKH--KVENELPEKIERLVRCEA 1343
G ++ + L + P++LRR+K K+ LP+K E+++ C
Sbjct: 707 ITMGGYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRL 764
Query: 1344 SAYQ-KLLMKRVE-ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401
+ Q K+ ++ + + I N + + ++ LR ICNHP L + + T+
Sbjct: 765 TEEQHKVYQNFIDSKEVYRILNGD-MQIFSGLVALRKICNHPDLFSGGPKNLKTIPDDDE 823
Query: 1402 LPPIV--RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 1459
+ GK+ +++ LL RVL FS ++LD++E +L ++Y YL++DG
Sbjct: 824 EDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGT 883
Query: 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 1519
T+ R LI ++N+ D+ F+FLL+ R GG+GVNL A+ VII+D DWNP D QA+ R
Sbjct: 884 TAIASRQPLITRYNE-DTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARER 942
Query: 1520 AHRIGQKRDVLVLRFETVQTVEEQV 1544
A RIGQK+ V V R T T+EE++
Sbjct: 943 AWRIGQKKQVTVYRLLTAGTIEEKI 967
Score = 65 (27.9 bits), Expect = 8.6e-55, Sum P(3) = 8.6e-55
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEK-YEPAVEN 1051
V + K++ +K+L +T+K L+K KLQ+ A HF+ + + +E VE
Sbjct: 316 VDENKTNERSKVLSKTDKRLKKHIKKLQKR---ALHFQGRVGLPKGKKTLESDMRLKVEG 372
Query: 1052 EDESDQAKHYLESNEK 1067
E ++++ YL + E+
Sbjct: 373 NSEGEESE-YLPTEEE 387
Score = 44 (20.5 bits), Expect = 8.6e-55, Sum P(3) = 8.6e-55
Identities = 34/165 (20%), Positives = 60/165 (36%)
Query: 518 KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSG 577
K + S S +T GN + +P S++G A+ S EV K G
Sbjct: 21 KTEQSQCVSDKQEMTIKQEDDGNMEVEESLPSCSSANGPSASAEGRSSEVP------KRG 74
Query: 578 PPADH-SIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVN 636
P H H + + + LE + + + +Q++SA + A +
Sbjct: 75 PALLHIDRHQIQTVEPSAQALELQGLGVDVYDQDVLEQGVLRQVDSAIHEASRAAQ--LA 132
Query: 637 DVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPL 681
DVE + + ++ S T + +N I + + N R L
Sbjct: 133 DVEKEYRSV-LDDLTSCTTSLRQINKIIEQLSPQAATNRNVNRKL 176
Score = 38 (18.4 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKET--EKY-----LQKL 1015
E+ +R +D + +L +IN + L Q A + VN+ L +KY L+K+
Sbjct: 135 EKEYRSVLDDLTSCTTSLRQINKIIEQLSP-QAATNRNVNRKLDSVKRQKYNKEQQLKKI 193
Query: 1016 GSKLQEAKSMASHFENEMDETQTVSVVEKYEP 1047
+K + +++ E +++ E EP
Sbjct: 194 TAKQKRLQAILGGVEVQVELDHASLEEEDIEP 225
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 592 (213.5 bits), Expect = 2.2e-54, P = 2.2e-54
Identities = 173/498 (34%), Positives = 241/498 (48%)
Query: 1116 DEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPP 1175
D+MGLGKT+Q I+ + YL + GPF GW SEIN + P + + Y G
Sbjct: 77 DQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDK 136
Query: 1176 EERRRLFKEKIVHQK---------FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI 1226
R + K H K F+VLLTTY+ + D+ LS+I W Y IIDE R+
Sbjct: 137 YCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALV--DQDFLSQIPWQYAIIDEAQRL 194
Query: 1227 KNASCKL-NADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKP 1285
KN + L N L+ + RLL+TGTP +F + + F
Sbjct: 195 KNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLS----A 250
Query: 1286 FESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHK-VENE---LPEKIER---- 1337
F+ GD L +L F+LRR K +E+ LP E
Sbjct: 251 FKETGDG---LSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMV 307
Query: 1338 -LVRCEASAYQKLLMKRVEENLG-SIGNSKGRSVHNSVMELRNICNHPYLSQ-LHAEEVD 1394
LV + Y +L K + L S G S S+ N V++LR C+HPYL + E +
Sbjct: 308 PLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFE 367
Query: 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL 1454
+H +V+ GKL +LD+LL +L + HRVL FS MT LD+++D++ ++Y Y
Sbjct: 368 E--GEH----LVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYE 421
Query: 1455 RLDGHTSGGDRGALIDKFNQQ-----DSPF-----FIFLLSIRAGGVGVNLQAADTVIIF 1504
RLDG +R A I F+ + DS F+F++S RAGGVG+NL AADTVI +
Sbjct: 422 RLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFY 481
Query: 1505 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
+ DWNPQVD QA RAHRIGQ VL + T +VEE + AE KL +++ +
Sbjct: 482 EQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNME 541
Query: 1565 DNNTSAEDRREYLESLLR 1582
+ D R + L R
Sbjct: 542 EKEEDGGDLRSLVFGLQR 559
Score = 437 (158.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 135/416 (32%), Positives = 195/416 (46%)
Query: 1083 PTCLQGG---KLREYQMSGLRWLVSLYNNQLNGILA-DEMGLGKTVQVIALICYLMETKN 1138
P C + G L+ +Q+ G+ WL+ Y +N +L D+MGLGKT+Q I+ + YL +
Sbjct: 40 PDCSEFGVTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQG 99
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQK-------- 1190
GPF GW SEIN + P + + Y G R + K H K
Sbjct: 100 LPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFL 159
Query: 1191 -FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL-NADLKHYQSSHRLLL 1248
F+VLLTTY+ + D+ LS+I W Y IIDE R+KN + L N L+ + RLL+
Sbjct: 160 PFDVLLTTYDIALV--DQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLI 217
Query: 1249 TGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXII 1308
TGTP +F + + F F+ GD
Sbjct: 218 TGTPIQNNLTELWALMHFCMPLVFGTLDQFLS----AFKETGDG---LSGLDVSNDKETY 270
Query: 1309 NRLHQVLRPFVLRRLKHK-VENE---LPEKIER-----LVRCEASAYQKLLMKRVEENLG 1359
L +L F+LRR K +E+ LP E LV + Y +L K + L
Sbjct: 271 KSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLE 330
Query: 1360 -SIGNSKGRSVHNSVMELRNICNHPYLSQ-LHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 1417
S G S S+ N V++LR C+HPYL + E + +H +V+ GKL +LD+
Sbjct: 331 LSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEE--GEH----LVQASGKLLVLDQ 384
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473
LL +L + HRVL FS MT LD+++D++ ++Y Y RLDG +R A I F+
Sbjct: 385 LLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFS 440
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 589 (212.4 bits), Expect = 3.1e-54, P = 3.1e-54
Identities = 153/469 (32%), Positives = 230/469 (49%)
Query: 1119 GLGKTVQVIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEER 1178
GLGKT+Q IAL+ YL +N GP W +E W P + I + G + R
Sbjct: 3 GLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDAR 62
Query: 1179 RRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+++++ +++V +T+YE ++ ++ K W Y++IDE HRIKN KL+ ++
Sbjct: 63 AAFIRDEMMPGEWDVCVTSYEMVIK--EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 120
Query: 1239 HYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXX 1298
++S++RLLLTGTP +FNS++DF WF+ GD
Sbjct: 121 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK-NCLGDQK----- 174
Query: 1299 XXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQK----LLMKRV 1354
++ RLH VL+PF+LRR+K VE LP K E V S Q+ +L +
Sbjct: 175 --------LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFVILAFFI 226
Query: 1355 EENLGSIGNSKGRSVHNSVMELRNI--CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKL 1412
EN + + + N +M LR C + +D L + IV K+
Sbjct: 227 SENSNNSNKNHKLDILNVIMLLREAKCCGASFC----LPSLDLLPSTLSISHIVLF--KM 280
Query: 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472
+ + L+ L + L + DY + Y Y + G + I+ F
Sbjct: 281 TLFPGMKMILRQKSRCFLTSDSQFAFLSALPDYEHWPSYFYRSISGQYLFVYKKEAIEAF 340
Query: 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532
N +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V V
Sbjct: 341 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 400
Query: 1533 RFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 1580
R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 401 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 449
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 602 (217.0 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 153/477 (32%), Positives = 239/477 (50%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDR--- 1140
KL +YQ +G+RWL L+ Q GIL DEMGLGKT+Q+IA + L +K N R
Sbjct: 501 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQG 560
Query: 1141 -GPFXXXXXXXXXXGWESEINFWAP--RIHKIVYCGPPEERR-RLFKEKIVHQKFNVLLT 1196
GP W E + W P R+ + G ++ +L +E + +L+T
Sbjct: 561 LGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIRE--IASCHGILIT 618
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXX 1256
+Y Y+ D + WHY+I+DEGH+I+N + + K +++ HR++L+G+P
Sbjct: 619 SYSYIRLMQDN--IHSYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNN 676
Query: 1257 XXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLR 1316
+ F + F+ P G ++ + L +
Sbjct: 677 LKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV--LRDAIN 734
Query: 1317 PFVLRRLKH--KVENELPEKIERLVRCEASAYQKLLMKRV--EENLGSIGNSKGRSVHNS 1372
P++LRR+K K+ LP+K E+++ C + Q+ + + + + I N V +
Sbjct: 735 PYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGD-MQVFSG 793
Query: 1373 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL-----CGKLEMLDRLLPKLKATDH 1427
++ LR ICNHP L ++ +P L + GK+ +++ LL H
Sbjct: 794 LVALRKICNHPDLFS-GGPKILKCVPDADLEEADQFGYWKRSGKMIVVESLLKIWHKQGH 852
Query: 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487
RVLFF+ ++L ++E +L + Y YLR+DG T+ R LI ++N+ D FIFLL+ R
Sbjct: 853 RVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNE-DKSIFIFLLTTR 911
Query: 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544
GG+GVNL AD VII+D DWNP D QA+ RA RIGQK+ V V R T T+EE++
Sbjct: 912 VGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 968
Score = 63 (27.2 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 960 KRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSD-RVNKLLKETEKYLQKLGSK 1018
++K +H+ + Q + + + R +K+D R+ K LK+ +K+ ++ SK
Sbjct: 288 RKKLALHKRVKKKAQAKNVQCVAPTSATKEKRGKALSKTDKRLKKHLKKLQKHALQVHSK 347
Query: 1019 L---QEAKSMASHF--ENEMDETQTVSVV--EKYEP-AVENEDESDQAKHYLESNEKYYL 1070
+E K++ + + D++ V E EP AVE E+E QA + E++ Y L
Sbjct: 348 AGIPKEKKNLETTKLKPGQKDDSGESDYVPDEHLEPEAVEEEEE--QASSHAENDSDYEL 405
Score = 55 (24.4 bits), Expect = 4.5e-52, Sum P(4) = 4.5e-52
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 1009 EKYLQKLGSKLQEAKSMASH--------FENEMDETQTVSVVEKYEPAVENEDESDQAKH 1060
EKYL E K +A H +N T + EK A+ D+ + K
Sbjct: 275 EKYLADQAKLSSERKKLALHKRVKKKAQAKNVQCVAPTSATKEKRGKALSKTDK--RLKK 332
Query: 1061 YLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQ 1095
+L+ +K+ L HS K + ++ L+ KL+ Q
Sbjct: 333 HLKKLQKHALQVHS-KAGIPKEKKNLETTKLKPGQ 366
Score = 47 (21.6 bits), Expect = 2.9e-52, Sum P(3) = 2.9e-52
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 974 QREKINLLKINDVEGYLRMVQ-----DAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASH 1028
+R+K+ L K + + VQ A ++ K L +T+K L+K KLQ+ ++ H
Sbjct: 287 ERKKLALHKRVKKKAQAKNVQCVAPTSATKEKRGKALSKTDKRLKKHLKKLQK-HALQVH 345
Query: 1029 FENEMDETQTVSVVEKYEPAVENED-ESD 1056
+ + + + K +P +++ ESD
Sbjct: 346 SKAGIPKEKKNLETTKLKPGQKDDSGESD 374
Score = 39 (18.8 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 463 KEQQLKQLRAQ 473
KEQQLK+++A+
Sbjct: 184 KEQQLKKIKAK 194
Score = 39 (18.8 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 639 ENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVK 692
ENG I +++ + G++ NS+ T + EVPRR P + + ++
Sbjct: 37 ENG---ICNSDLVNHFGVH---NSDSKPSTSVAVPVEVPRRGQPLLHINRQQIQ 84
Score = 39 (18.8 bits), Expect = 2.0e-51, Sum P(3) = 2.0e-51
Identities = 33/163 (20%), Positives = 61/163 (37%)
Query: 826 KTKQRMSTCFNKLKE---SVSSSEDISAKTKSVIEXXXXXXXXXXXXXXNDFLND-FFKP 881
KT +R+ KL++ V S I K K +E +D++ D +P
Sbjct: 325 KTDKRLKKHLKKLQKHALQVHSKAGIP-KEKKNLETTKLKPGQKDDSGESDYVPDEHLEP 383
Query: 882 --ITTDMDRLKSYKKHRHGRRIKQLXXXXXXXXXXXXXXXXXXXXXF-FSEIEAHKERLD 938
+ + ++ S+ ++ ++ L F SE E H
Sbjct: 384 EAVEEEEEQASSHAENDSDYELRNLSGKGKYLVKRDSKDAGNDTDYFPSSEEEEHT---- 439
Query: 939 EVFKIKRERWR--GVNKYVKEFHKRKERIHREKIDRIQREKIN 979
V K K +RWR G Y K+ ++ +R + +R E+++
Sbjct: 440 -VGKRKVKRWRDDGDEDYYKQRLRKWQRERLKDKERSVAEELS 481
Score = 37 (18.1 bits), Expect = 4.5e-52, Sum P(4) = 4.5e-52
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDVE 987
KY KE +K + ++++ + L K+N++E
Sbjct: 181 KYNKEQQLKKIKAKQKRLQAVLGGTEILDKVNEIE 215
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 598 (215.6 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
Identities = 151/475 (31%), Positives = 241/475 (50%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDR--- 1140
KL +YQ +G+RWL L+ Q GIL DEMGLGKT+Q+IA + L +K N R
Sbjct: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
Query: 1141 -GPFXXXXXXXXXXGWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTT 1197
GP W E + W P R+ + G ++ + H +L+T+
Sbjct: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCH-GILITS 624
Query: 1198 YEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXX 1257
Y Y+ D +S+ WHY+I+DEGH+I+N + + K +++ HR++L+G+P
Sbjct: 625 YSYIRLMQD--DISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 682
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
+ F + F+ P G ++ + L + P
Sbjct: 683 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV--LRDTINP 740
Query: 1318 FVLRRLKH--KVENELPEKIERLVRCEASAYQ-KLLMKRVE-ENLGSIGNSKGRSVHNSV 1373
++LRR+K K+ LP+K E+++ C + Q K+ V+ + + I N + + + +
Sbjct: 741 YLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGE-MQIFSGL 799
Query: 1374 MELRNICNHPYLSQLHAEEVDTLIPKHYLPP----IVRLCGKLEMLDRLLPKLKATDHRV 1429
+ LR ICNHP L + + L P L + GK+ +++ LL RV
Sbjct: 800 IALRKICNHPDLFSGGPKNLKGL-PDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRV 858
Query: 1430 LFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489
L FS ++LD++E +L ++Y YL++DG T+ R LI ++N+ D+ F+FLL+ R G
Sbjct: 859 LLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFLLTTRVG 917
Query: 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544
G+GVNL A+ V+I+D DWNP D QA+ RA RIGQK+ V V R T T+EE++
Sbjct: 918 GLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Score = 50 (22.7 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 993 VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEM-DETQTVSVVEK--YEPAV 1049
V K +R+ K +K+ +K + K+ K+ +E++M E + S E+ Y P
Sbjct: 320 VLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRP-WESDMRPEAEGDSEGEESEYFPTE 378
Query: 1050 ENEDESD 1056
E E+E D
Sbjct: 379 EEEEEED 385
WARNING: HSPs involving 321 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1605 1516 0.00099 124 3 11 23 0.46 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 571
No. of states in DFA: 628 (67 KB)
Total size of DFA: 598 KB (2267 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 175.38u 0.20s 175.58t Elapsed: 00:00:10
Total cpu time: 175.53u 0.20s 175.73t Elapsed: 00:00:10
Start: Sat May 11 05:36:59 2013 End: Sat May 11 05:37:09 2013
WARNINGS ISSUED: 2