Query 000377
Match_columns 1605
No_of_seqs 461 out of 2710
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:07:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000377.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_154-158//hhsearch_pdb/000377hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 718.9 39.3 509 1078-1605 224-759 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 665.4 40.6 485 1088-1576 53-567 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 599.9 34.0 454 1083-1577 31-493 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 457.6 32.5 446 1088-1560 151-637 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 392.2 29.7 436 1089-1556 8-493 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 370.0 30.7 469 1088-1584 246-791 (936)
7 4a2q_A RIG-I, retinoic acid in 1.0 1 1 364.6 35.9 469 1087-1584 245-791 (797)
8 2fwr_A DNA repair protein RAD2 1.0 1 1 357.5 19.3 375 1084-1555 87-471 (472)
9 4a2p_A RIG-I, retinoic acid in 1.0 1 1 352.3 29.4 463 1088-1584 5-550 (556)
10 3tbk_A RIG-I helicase domain; 1.0 1 1 343.0 25.9 467 1089-1583 3-548 (555)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=718.86 Aligned_cols=509 Identities=43% Similarity=0.701 Sum_probs=427.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 22589976589975188999999999985059885998399973799999999999984199998999946875112299
Q 000377 1078 SVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (1605)
Q Consensus 1078 ~i~~qP~~L~gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~~gPiLIVvP~SLL~nW~~ 1157 (1605)
.+..+|..+.+++|||||++|++||+.++.++.+|||||+||+|||+|+|+++.+++......+|+|||||.+++.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 02569986579975899999999999985138998998278753299999999999986077998899988038999999
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHH---------HHCCCCCEEEECHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 9977679960999839936899988855---------3027753999847788600488821246800999915853367
Q 000377 1158 EINFWAPRIHKIVYCGPPEERRRLFKEK---------IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (1605)
Q Consensus 1158 Ei~K~aP~l~vivy~Gs~~~R~kl~~~~---------i~~~~fdVVITTYe~L~k~~Dr~~L~kikwdlIIIDEAHriKN 1228 (1605)
||.+|+|.+.+++|+|....+..+.... .....++|+||||+++.+ +...+..+.|++|||||||++||
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~--~~~~l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHH--THHHHHTSEEEEEEETTGGGGCC
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHH--HHHHHHCCCCCEEEHHHHHHHCC
T ss_conf 9999779964999827777788988877622630013445667889906999986--49998337732564134444147
Q ss_pred CCCHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54069999994001341001356788998999999973318788994789988336556799999135665699999999
Q 000377 1229 ASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLII 1308 (1605)
Q Consensus 1229 ~sSKlskaL~~L~a~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Lseee~~~iI 1308 (1605)
..+++++++..+.+.+||+|||||++|++.|||++++||.|+.|.....|..... . ......+
T Consensus 382 ~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~------~-----------~~~~~~~ 444 (800)
T 3mwy_W 382 AESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ------D-----------EEQEEYI 444 (800)
T ss_dssp SSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC------T-----------THHHHHH
T ss_pred CHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC------C-----------HHHHHHH
T ss_conf 1019999999752243897227857799999999999858663674344232223------1-----------4689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC----CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999866899988666673027532578897044399999999999974002----78887423689999998826862
Q 000377 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI----GNSKGRSVHNSVMELRNICNHPY 1384 (1605)
Q Consensus 1309 ~RL~kiLrPflLRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~~i----~~~k~k~iln~L~qLRkicnHP~ 1384 (1605)
.+|+.+++||++||++.++...||++.+.++.|+|++.|+.+|+.+....... .......+++.+++||++|+||+
T Consensus 445 ~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~ 524 (800)
T 3mwy_W 445 HDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPY 524 (800)
T ss_dssp HHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHH
T ss_conf 99999975777532087664316882799997079999999999999999999861035454469999999998735865
Q ss_pred CCCHHHHHHHHCCCCC------CCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 1110166431017888------8982463003799999987874309985999974277999999998632961999958
Q 000377 1385 LSQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (1605)
Q Consensus 1385 L~~~~~eeid~~i~~~------~~~~lir~SgKle~L~~LL~kL~~~G~KVLIFSQft~~LdiLee~L~~rGikylrLdG 1458 (1605)
++....+......... ....++..++|+..|.++|..+...++||||||+|+.++++|+++|...|+.+++++|
T Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G 604 (800)
T 3mwy_W 525 LFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 604 (800)
T ss_dssp GSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEEST
T ss_pred HHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 42355789988615665557788887664276999999999997527981899963599999999999867997899969
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 99999999999998179998379998214444434866679999973899943389996600124997949999998089
Q 000377 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (1605)
Q Consensus 1459 sTs~eEReeiId~FN~gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~ 1538 (1605)
+++..+|+.+++.|+.++...++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+
T Consensus 605 ~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 605 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 99999999999996089998259997454456787760163689946878811689999998855898637999986199
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHCC
Q ss_conf 99999999999999797431026866888999---99999999999997521-----038999958999987319
Q 000377 1539 TVEEQVRASAEHKLGVANQSITAGFFDNNTSA---EDRREYLESLLRECKKE-----EAAPVLDDDALNDLLARR 1605 (1605)
Q Consensus 1539 TIEEkIlera~~Kl~l~~kVI~aG~fd~~~s~---ee~re~Le~LLe~~~~~-----e~~~v~dDdeln~lLAR~ 1605 (1605)
|+||+|++++..|+.+...+|+.|..+..... ....+.|..+|+..... .....+.++++.++|+|.
T Consensus 685 TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 759 (800)
T 3mwy_W 685 TVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHA 759 (800)
T ss_dssp SHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSHHHHHHHHTCCHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 899999999999888999997037566532112347899999999971657651145764325405799998743
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=665.39 Aligned_cols=485 Identities=31% Similarity=0.500 Sum_probs=402.2
Q ss_pred CCCCCHHHHHHHHHHHHHH-----HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCHHHH
Q ss_conf 9975188999999999985-----059885998399973799999999999984199----9989999468751122999
Q 000377 1088 GGKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPSSVLPGWESE 1158 (1605)
Q Consensus 1088 gg~LRPYQleGL~wLlsL~-----~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~----~gPiLIVvP~SLL~nW~~E 1158 (1605)
...|||||.+|+.||...+ .++.+|||||+||+|||+|+|+++..++..... .+++|||||.+++.||..|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 00351999999999998423354458887596107874299999999999997486656777857999658998879999
Q ss_pred HHHHCCC-CEEEEEC-CCHHHHHHHHHHHHHC----CCCCEEEECHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 9776799-6099983-9936899988855302----77539998477886004888212468009999158533675406
Q 000377 1159 INFWAPR-IHKIVYC-GPPEERRRLFKEKIVH----QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232 (1605)
Q Consensus 1159 i~K~aP~-l~vivy~-Gs~~~R~kl~~~~i~~----~~fdVVITTYe~L~k~~Dr~~L~kikwdlIIIDEAHriKN~sSK 1232 (1605)
|.+|++. +.++.+. |....+.......... ..++|+|+||+.+.. +...+....|++||+||||++||..++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--~~~~l~~~~~~~vI~DEaH~ikn~~~~ 210 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL--HAEVLHKGKVGLVICDEGHRLKNSDNQ 210 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH--HTTTTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHH--HHHHHHCCCCCEEEEECCEECCCHHHH
T ss_conf 999758872599980898899999999998733777787579963899876--578750488657998786224780459
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999940013410013567889989999999733187889947899883365567999991356656999999999999
Q 000377 1233 LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (1605)
Q Consensus 1233 lskaL~~L~a~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Lseee~~~iI~RL~ 1312 (1605)
.++++..+.+.+||+|||||++|++.|||++++|+.|++|++...|..+|..|+....+..... .........+..|+
T Consensus 211 ~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 211 TYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCH--HHHHHHHHHHHHHH
T ss_conf 9999985556737998467345889999999986188768999999986326154167767788--89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf 98668999886666730275325788970443999999999999740027----88874236899999988268621110
Q 000377 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQL 1388 (1605)
Q Consensus 1313 kiLrPflLRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~~i~----~~k~k~iln~L~qLRkicnHP~L~~~ 1388 (1605)
.++.||++||++.++...||++.+.++.|++++.|+.+|+.+........ .......+..++.||++|+||.++..
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99889998710876764279836999983799899999999999899999876276214599999999999579998888
Q ss_pred HHHHH-------HHCCCCCCC--CHHHHHCCHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 16643-------101788889--8246300379999998787430-9985999974277999999998632961999958
Q 000377 1389 HAEEV-------DTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (1605)
Q Consensus 1389 ~~eei-------d~~i~~~~~--~~lir~SgKle~L~~LL~kL~~-~G~KVLIFSQft~~LdiLee~L~~rGikylrLdG 1458 (1605)
..... ....+..+. ......++|+..|..++..+.. .++|+||||+++.++++|+.+|...|+.+.+++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G 448 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 448 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 87415400355776454211100057011748999999999986469987999980599999999999977997899839
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 99999999999998179998379998214444434866679999973899943389996600124997949999998089
Q 000377 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (1605)
Q Consensus 1459 sTs~eEReeiId~FN~gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~ 1538 (1605)
+++..+|+++++.|++++...++||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+
T Consensus 449 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 99999999999996399999679998445566784652389899979999813799998840322898726999988798
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHH
Q ss_conf 9999999999999979743102686-6888999999999
Q 000377 1539 TVEEQVRASAEHKLGVANQSITAGF-FDNNTSAEDRREY 1576 (1605)
Q Consensus 1539 TIEEkIlera~~Kl~l~~kVI~aG~-fd~~~s~ee~re~ 1576 (1605)
|+||+|++++..|..+.+.+++++. .....+.++.+++
T Consensus 529 tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~L 567 (644)
T 1z3i_X 529 TIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL 567 (644)
T ss_dssp SHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHH
T ss_conf 899999999999999999985686054337899999998
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=599.94 Aligned_cols=454 Identities=32% Similarity=0.556 Sum_probs=392.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 97658997518899999999998505988599839997379999999999998419999899994687511229999776
Q 000377 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (1605)
Q Consensus 1083 P~~L~gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~~gPiLIVvP~SLL~nW~~Ei~K~ 1162 (1605)
|..+. .+|+|||.+++.|+..++..+.++||||+||+|||+++++++..+... ...+++|||||.+++.||..||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred CHHHH-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 83320-033699999999999974179988998089973899999999988755-8999789990389999999999997
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 79960999839936899988855302775399984778860048882124680099991585336754069999994001
Q 000377 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (1605)
Q Consensus 1163 aP~l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L~kikwdlIIIDEAHriKN~sSKlskaL~~L~a 1242 (1605)
+|...+.+++|.... .....++|+|+||+.+.+.. .+....|++||+||||+++|..++.++++..+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~---~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred CCCCEEEEEECCCHH--------CCCCCCCEEEEEHHHHHCCC---HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 799559997267021--------00357768996379972630---2117872879980841017876899999996004
Q ss_pred CCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34100135678899899999997331878899478998833655679999913566569999999999999866899988
Q 000377 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (1605)
Q Consensus 1243 ~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Lseee~~~iI~RL~kiLrPflLRR 1322 (1605)
.++|+|||||++|++.|||++++|+.|+.|++...|..+|..|+.... .....+|+.++.|+++||
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~--------------~~~~~~l~~~l~~~~lrr 243 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFILRR 243 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC--------------HHHHHHHHHHHHHHEEEE
T ss_conf 718997467777999999999998587757998999998525111466--------------889999999976674550
Q ss_pred HHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCC-----CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 6666--73027532578897044399999999999974002788-----8742368999999882686211101664310
Q 000377 1323 LKHK--VENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNS-----KGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (1605)
Q Consensus 1323 tKkd--Ve~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~~i~~~-----k~k~iln~L~qLRkicnHP~L~~~~~eeid~ 1395 (1605)
++.+ +...||++.+..+.|++++.|..+|+.+.......... ....++..++.||++|+||.+....
T Consensus 244 ~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~------ 317 (500)
T 1z63_A 244 TKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG------ 317 (500)
T ss_dssp CTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS------
T ss_pred CCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCC------
T ss_conf 25542411229997589998189999999999999999999986423210679999999999881799884385------
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 178888982463003799999987874309985999974277999999998632-9619999589999999999999817
Q 000377 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ 1474 (1605)
Q Consensus 1396 ~i~~~~~~~lir~SgKle~L~~LL~kL~~~G~KVLIFSQft~~LdiLee~L~~r-GikylrLdGsTs~eEReeiId~FN~ 1474 (1605)
......++|+..+.+++.++...++|+||||+++.+++.+..+|... |+.+.+++|+++..+|+++++.|++
T Consensus 318 -------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 318 -------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp -------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred -------CCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf -------2011115529999999999872688689997218899999999988538876999799999999999999608
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99983799982144444348666799999738999433899966001249979499999980899999999999999979
Q 000377 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554 (1605)
Q Consensus 1475 gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l 1554 (1605)
++. +.++|+||+++++||||+.|++||+||++|||..+.|++||++|+||+++|.||+|++.+|+||+|++++..|..+
T Consensus 391 ~~~-~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 391 NPS-VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp CTT-CCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CCC-CCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 999-8779995333557774455888999589989545899999888738987069999774898999999999999999
Q ss_pred HHHHHCCCC-CCCCCCHHHHHHHH
Q ss_conf 743102686-68889999999999
Q 000377 1555 ANQSITAGF-FDNNTSAEDRREYL 1577 (1605)
Q Consensus 1555 ~~kVI~aG~-fd~~~s~ee~re~L 1577 (1605)
++.+++++. .....+.+|.++++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~l~ 493 (500)
T 1z63_A 470 FKDIISSGDSWITELSTEELRKVI 493 (500)
T ss_dssp SSSGGGSTTGGGGSSCHHHHHHHH
T ss_pred HHHHHHCCCCHHCCCCHHHHHHHH
T ss_conf 999860685021159999999996
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=457.56 Aligned_cols=446 Identities=17% Similarity=0.183 Sum_probs=327.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCE
Q ss_conf 99751889999999999850598859983999737999999999999841999989999468751122999977679960
Q 000377 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (1605)
Q Consensus 1088 gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~~gPiLIVvP~SLL~nW~~Ei~K~aP~l~ 1167 (1605)
..+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++..+ ..+++|||||.+++.||..||.+|+ ++.
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHH-CCC
T ss_conf 999709999999999970--589889878999759999999999999818-9982999957888999999999986-998
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCC-CCCCCCCCCEEEEECCCCCCCCCCHH---HHHHHHH--H
Q ss_conf 9998399368999888553027753999847788600488-82124680099991585336754069---9999940--0
Q 000377 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASCKL---NADLKHY--Q 1241 (1605)
Q Consensus 1168 vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr-~~L~kikwdlIIIDEAHriKN~sSKl---skaL~~L--~ 1241 (1605)
+.++.+...... ..........++|+|+||+.+.+.... ..+....|++|||||||+++|..++. ++.+..+ .
T Consensus 227 v~v~~~~~~~~~-~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 227 FALFDDERYAEA-QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CEECCHHHHHHH-HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHH-HHHCCCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 799806205554-3200364456898997689986487888876415877897444676258887542999999998625
Q ss_pred CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC---------CCCCCCC-----HHHHHH-------
Q ss_conf 1341001356788998999999973318788994789988336556---------7999991-----356656-------
Q 000377 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE---------SNGDNSP-----DEALLS------- 1300 (1605)
Q Consensus 1242 a~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~~Pie---------~~g~~~~-----~e~~Ls------- 1300 (1605)
++++|+|||||++|++.|+|++++|+.|..|.+...|..++..... ....... -...+.
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 78589997687669879999999825930118989999999857889999998742678998899999988420336788
Q ss_pred -------HHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -------999-999999999986-----6899988666673027532578897044399999999999974002788874
Q 000377 1301 -------EEE-NLLIINRLHQVL-----RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGR 1367 (1605)
Q Consensus 1301 -------eee-~~~iI~RL~kiL-----rPflLRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~~i~~~k~k 1367 (1605)
.+. .......+..++ ..+++|+++..+ ..+|.+....+.+.++.....+|....... .....
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~ 460 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMG----ARKSA 460 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTT----CCSSG
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEECCCCHHHHHHHHHHHHHH----HHHHH
T ss_conf 7503622233379999999999986173326563226554-556711157523689999999999875430----21266
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 23689999998826862111016643101788889824630037999999878743099859999742779999999986
Q 000377 1368 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1447 (1605)
Q Consensus 1368 ~iln~L~qLRkicnHP~L~~~~~eeid~~i~~~~~~~lir~SgKle~L~~LL~kL~~~G~KVLIFSQft~~LdiLee~L~ 1447 (1605)
. .....+.+|...... +.. .....+..+.|+..|.+++.. ..+.|+||||+++..++.|...|.
T Consensus 461 ~------~~~~~~l~pe~~~~~-------l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~ 524 (968)
T 3dmq_A 461 E------DRARDMLYPERIYQE-------FEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLR 524 (968)
T ss_dssp G------GGTHHHHCSGGGTTT-------TTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHH
T ss_pred H------HHHHHHCCHHHHHHH-------HHH-HHHCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 7------777641085989987-------643-331356856799999999983--799978999695999999999999
Q ss_pred H-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3-296199995899999999999998179998379998214444434866679999973899943389996600124997
Q 000377 1448 F-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (1605)
Q Consensus 1448 ~-rGikylrLdGsTs~eEReeiId~FN~gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQk 1526 (1605)
. .|+++..++|+++..+|..+++.|++++..+ .+|++|+++++|||++.|++||+||+||||..+.|++||++|+||+
T Consensus 525 ~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~ 603 (968)
T 3dmq_A 525 EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA 603 (968)
T ss_dssp TTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSC
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 874983899849999999999999974799763-0898533431688855676799956999878999870114307998
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9499999980899999999999999979743102
Q 000377 1527 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (1605)
Q Consensus 1527 KeV~VyrLIt~~TIEEkIlera~~Kl~l~~kVI~ 1560 (1605)
+.|.||+++..+++|++|+..+..|..+....+.
T Consensus 604 ~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 604 HDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp SCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCC
T ss_conf 5089998057771999999999867876353799
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=392.18 Aligned_cols=436 Identities=16% Similarity=0.171 Sum_probs=297.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCHHHHHHHHC--CC
Q ss_conf 9751889999999999850598859983999737999999999999841999989999468-75112299997767--99
Q 000377 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--PR 1165 (1605)
Q Consensus 1089 g~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~~gPiLIVvP~-SLL~nW~~Ei~K~a--P~ 1165 (1605)
.+|+|||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||. +++.||..++.+|+ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHHCCCH
T ss_conf 7863999999999961----9-9899918998789999999999986--4798599997888999999999998747561
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH--HHHHH-HHC
Q ss_conf 609998399368999888553027753999847788600488821246800999915853367540699--99994-001
Q 000377 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN--ADLKH-YQS 1242 (1605)
Q Consensus 1166 l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L~kikwdlIIIDEAHriKN~sSKls--kaL~~-L~a 1242 (1605)
..+..++|......... .....+|+|+||+.+........+....|++|||||||++++...... ..+.. ...
T Consensus 81 ~~v~~~~g~~~~~~~~~----~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH----HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred HHEEEEECCCCHHHHHH----HCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 11687607753355665----33579899963999999986087156541089997875668888199999999732887
Q ss_pred CCEECCCCCCCCCCHHHHHHHHHHHCCCCC---CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 341001356788998999999973318788---99478998833655679999913566569999999999999866899
Q 000377 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIF---NSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (1605)
Q Consensus 1243 ~~RLLLTGTPlqNnl~ELwsLLnFL~P~if---~s~~~F~e~F~~Pie~~g~~~~~e~~Lseee~~~iI~RL~kiLrPfl 1319 (1605)
.++|+|||||. ++..+++.++.++.+..+ .....+...+..+... ......+.. .+..+...+.+++
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF----EWVRVDLPE-----IYKEVRKLLREML 226 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE----EEEEECCCH-----HHHHHHHHHHHHH
T ss_pred CEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCE----EEEECCCCH-----HHHHHHHHHHHHH
T ss_conf 76999956998-8857899999850700050267875878875278742----689568858-----8999999898999
Q ss_pred HHHHHHHHHHCCCCCEEE-EEEECCCHHHHHHHHHHHH--------------------HHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 988666673027532578-8970443999999999999--------------------7400278887423689999998
Q 000377 1320 LRRLKHKVENELPEKIER-LVRCEASAYQKLLMKRVEE--------------------NLGSIGNSKGRSVHNSVMELRN 1378 (1605)
Q Consensus 1320 LRRtKkdVe~eLP~K~E~-vI~veLS~~Qk~LYk~I~~--------------------~l~~i~~~k~k~iln~L~qLRk 1378 (1605)
.++.+......+...... +....+......++..+.. ................+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 99999999735565457773355789999999987533563113479999888889999999985257999999999987
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCCC----------CHHHHHCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 826862111016643101788889----------824630037999999878743--09985999974277999999998
Q 000377 1379 ICNHPYLSQLHAEEVDTLIPKHYL----------PPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYL 1446 (1605)
Q Consensus 1379 icnHP~L~~~~~eeid~~i~~~~~----------~~lir~SgKle~L~~LL~kL~--~~G~KVLIFSQft~~LdiLee~L 1446 (1605)
.+.++..... ......... ......++|+..|.++|.++. ..++|+||||+++..++.+.++|
T Consensus 307 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 307 EAKAGSTKAS-----KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHTTCCHHH-----HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 5223211455-----66665078898999999887458998699999999999843689975999976689999999999
Q ss_pred HHCCCEEEEEEC--------CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 632961999958--------999999999999981799983799982144444348666799999738999433899966
Q 000377 1447 TFKQYRYLRLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 1518 (1605)
Q Consensus 1447 ~~rGikylrLdG--------sTs~eEReeiId~FN~gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiG 1518 (1605)
...|+.+..++| +++..+|.++++.|++++.. +|++|+++++||||+.|++||+||++|||..+.|++|
T Consensus 382 ~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~G 458 (494)
T 1wp9_A 382 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 458 (494)
T ss_dssp HHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHT
T ss_pred HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCE---EEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHH
T ss_conf 9759980799656654444458999999999998669946---9998884125887143798999289887899999875
Q ss_pred HHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 00124997949999998089999999999999997974
Q 000377 1519 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556 (1605)
Q Consensus 1519 RAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l~~ 1556 (1605)
|++|.|+ +.+|+|++.+++||+++.++..|..+++
T Consensus 459 R~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 459 RTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp TSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 2257788---4699999569878999998887898730
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=369.99 Aligned_cols=469 Identities=15% Similarity=0.165 Sum_probs=289.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECCC-CCCCHHHHHHHHCC
Q ss_conf 9975188999999999985059885998399973799999999999984199--99899994687-51122999977679
Q 000377 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (1605)
Q Consensus 1088 gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~--~gPiLIVvP~S-LL~nW~~Ei~K~aP 1164 (1605)
..+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||+. ++.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 89877999999999980----99899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHH-
Q ss_conf --9609998399368999888553027753999847788600488821-246800999915853367540699999940-
Q 000377 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (1605)
Q Consensus 1165 --~l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L-~kikwdlIIIDEAHriKN~sSKlskaL~~L- 1240 (1605)
.+.+..++|........ .......+|+|+||+.+........+ ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHH---HHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC-HHHHHHHHH
T ss_conf 1695599997996312578---974169999994499999998717645336787999987313599866-999999999
Q ss_pred H--------CCCEECCCCCCCCCCHHH----------HHHHHHHH-CCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 0--------134100135678899899----------99999733-1878899478998833655679999913566569
Q 000377 1241 Q--------SSHRLLLTGTPLQNNLEE----------LWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (1605)
Q Consensus 1241 ~--------a~~RLLLTGTPlqNnl~E----------LwsLLnFL-~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Lse 1301 (1605)
. ..++++|||||.+++..+ +|++|+.- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHH
T ss_conf 98631378867399863885545402089999999999985497155346544899987536776237733655675799
Q ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHCCCCCEEEEEEE-CCCHHHHHHHHHHHHHH
Q ss_conf 9999999999998668----------------------999886666730275325788970-44399999999999974
Q 000377 1302 EENLLIINRLHQVLRP----------------------FVLRRLKHKVENELPEKIERLVRC-EASAYQKLLMKRVEENL 1358 (1605)
Q Consensus 1302 ee~~~iI~RL~kiLrP----------------------flLRRtKkdVe~eLP~K~E~vI~v-eLS~~Qk~LYk~I~~~l 1358 (1605)
......+..++..+.. ++....+......+|........+ .+..+... +..+...+
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~-l~~~~~al 556 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH-LRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999999999988766555320223322577999999999988774055321035799999999999-99988887
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHCC----CCC------CC---HHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHH--
Q ss_conf 002788874236899999988268----621------11---016643101788889824630037999999878743--
Q 000377 1359 GSIGNSKGRSVHNSVMELRNICNH----PYL------SQ---LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK-- 1423 (1605)
Q Consensus 1359 ~~i~~~k~k~iln~L~qLRkicnH----P~L------~~---~~~eeid~~i~~~~~~~lir~SgKle~L~~LL~kL~-- 1423 (1605)
.... .......+..+...+.. .+. .. .......... ......++|+..|.++|.+..
T Consensus 557 ~i~~---~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~-----~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 557 IISE---DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALS-----KDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHH---HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-----TSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHC---CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5002---042888999999999987632588789999998999999999764-----05677897999999999998535
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEEECCCCC
Q ss_conf 09985999974277999999998632------------9619999589999999999999817-9998379998214444
Q 000377 1424 ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAGG 1490 (1605)
Q Consensus 1424 ~~G~KVLIFSQft~~LdiLee~L~~r------------GikylrLdGsTs~eEReeiId~FN~-gds~~~VlLLSTkAGG 1490 (1605)
..++|+||||+++.+++.|.++|... |..+..++|+++..+|.++++.|+. ++.. +|++|++++
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~ 705 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVAD 705 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS---EEEEECC--
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEE---EEEEECCHH
T ss_conf 89974999969799999999998637353666616996578765678889999999999863159815---999807264
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 43486667999997389994338999660012499794999999808999999999999999797431026866888999
Q 000377 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA 1570 (1605)
Q Consensus 1491 eGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l~~kVI~aG~fd~~~s~ 1570 (1605)
+||||+.|++||+||+|||+..+.|++|| |+.+++.+|.|++.+++|++.. ....|..++.+++..-. ....
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~l~---~~~~ 777 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEKIQ---KWDE 777 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHHHH---TSCH
T ss_pred CCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHHHH---CCCH
T ss_conf 27760558989993899988999996487----7888877999986988999999-98899999999999864---4799
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999997
Q 000377 1571 EDRREYLESLLREC 1584 (1605)
Q Consensus 1571 ee~re~Le~LLe~~ 1584 (1605)
++.+..+..+-+..
T Consensus 778 ~~~~~~i~~lq~~~ 791 (936)
T 4a2w_A 778 ETFAKKIHNLQMKE 791 (936)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 7
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=364.62 Aligned_cols=469 Identities=13% Similarity=0.129 Sum_probs=292.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECCC-CCCCHHHHHHHHC
Q ss_conf 89975188999999999985059885998399973799999999999984199--99899994687-5112299997767
Q 000377 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWA 1163 (1605)
Q Consensus 1087 ~gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~--~gPiLIVvP~S-LL~nW~~Ei~K~a 1163 (1605)
...+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||+. ++.||..+|.+|+
T Consensus 245 g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 889999999999999980----9998999699972999999999999984665679969999698999999999999861
Q ss_pred C--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 9--9609998399368999888553027753999847788600488821-246800999915853367540699999940
Q 000377 1164 P--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (1605)
Q Consensus 1164 P--~l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L-~kikwdlIIIDEAHriKN~sSKlskaL~~L 1240 (1605)
+ ++.+..++|........ .......+|+|+||+.+........+ ....|++|||||||++.+... ....+..+
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~ 396 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY 396 (797)
T ss_dssp GGGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHH
T ss_pred CCCCCEEEEEECCCCHHHHH---HHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-HHHHHHHH
T ss_conf 43794699996996232469---974079999997669999999826546513377899988635588764-99999999
Q ss_pred -H--------CCCEECCCCCCCCCCH----------HHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf -0--------1341001356788998----------9999999733-187889947899883365567999991356656
Q 000377 1241 -Q--------SSHRLLLTGTPLQNNL----------EELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300 (1605)
Q Consensus 1241 -~--------a~~RLLLTGTPlqNnl----------~ELwsLLnFL-~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Ls 1300 (1605)
. ..++++|||||.+++. .++|..++.- ..........+..++..|...............
T Consensus 397 ~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 99763147887859997277554552248999999999998549848854543178899735888548884577778678
Q ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999866899----------------------988666673027532578897044399999999999974
Q 000377 1301 EEENLLIINRLHQVLRPFV----------------------LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL 1358 (1605)
Q Consensus 1301 eee~~~iI~RL~kiLrPfl----------------------LRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l 1358 (1605)
.......+..++..++.++ ....+......++... ....++..+....
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHH
T ss_conf 999999999999999998756776530000114056778999999987774034320----------2567999999999
Q ss_pred -------HCCCCCCCCCHHHHHHHHHHHHCCCCCCC--HHHHHHHHCCCCC------CCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf -------00278887423689999998826862111--0166431017888------89824630037999999878743
Q 000377 1359 -------GSIGNSKGRSVHNSVMELRNICNHPYLSQ--LHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLK 1423 (1605)
Q Consensus 1359 -------~~i~~~k~k~iln~L~qLRkicnHP~L~~--~~~eeid~~i~~~------~~~~lir~SgKle~L~~LL~kL~ 1423 (1605)
..............+..++..|....-.. ............. ........++|+..|.++|.+..
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999998876541325888999999999987504766899999999999999998763078889959999999999985
Q ss_pred --CCCCEEEEEECCHHHHHHHHHHHHH------------CCCEEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEEECCC
Q ss_conf --0998599997427799999999863------------29619999589999999999999817-99983799982144
Q 000377 1424 --ATDHRVLFFSTMTRLLDVMEDYLTF------------KQYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRA 1488 (1605)
Q Consensus 1424 --~~G~KVLIFSQft~~LdiLee~L~~------------rGikylrLdGsTs~eEReeiId~FN~-gds~~~VlLLSTkA 1488 (1605)
..++|+||||+++.+++.|.++|.. .|..+..++|+++..+|..+++.|++ +... +|++|++
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~ 703 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 703 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE---EEEECCC
T ss_conf 0589970899979589999999999747564665521898447754578989999999999851369704---9997480
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 44434866679999973899943389996600124997949999998089999999999999997974310268668889
Q 000377 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 1568 (1605)
Q Consensus 1489 GGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l~~kVI~aG~fd~~~ 1568 (1605)
+++|||++.|++||+||+||||..+.|++|| |+.+++.+|.|++.+++|++ ......|..++.++|..- ...
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l---~~~ 775 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI---QKW 775 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH---HTS
T ss_pred HHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH---HCC
T ss_conf 5447975108989994899988999985388----87878659999728768899-998889999999999987---457
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997
Q 000377 1569 SAEDRREYLESLLREC 1584 (1605)
Q Consensus 1569 s~ee~re~Le~LLe~~ 1584 (1605)
..++....+..+-++.
T Consensus 776 ~~~~~~~~i~~lq~~~ 791 (797)
T 4a2q_A 776 DEETFAKKIHNLQMKE 791 (797)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9899999999999999
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=357.52 Aligned_cols=375 Identities=16% Similarity=0.181 Sum_probs=267.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCHHHHHHHH
Q ss_conf 765899751889999999999850598859983999737999999999999841999989999468-7511229999776
Q 000377 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFW 1162 (1605)
Q Consensus 1084 ~~L~gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~~gPiLIVvP~-SLL~nW~~Ei~K~ 1162 (1605)
....+.+|+|||.+++.++.. +.++||+++||+|||++++.++..+ .+++|||||. .++.||..+|.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 455899868899999999996----5987999699998899999999980------999999987999999999999967
Q ss_pred CCCCE-EEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 79960-99983993689998885530277539998477886004888212468009999158533675406999999400
Q 000377 1163 APRIH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (1605)
Q Consensus 1163 aP~l~-vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L~kikwdlIIIDEAHriKN~sSKlskaL~~L~ 1241 (1605)
... +.+++|... ...+|+|+||+.+....+ .+ ...|++|||||||++.+.... ..+..+.
T Consensus 157 --~~~~v~~~~g~~~------------~~~~Ivv~T~~~l~~~~~--~~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 157 --GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp --CGGGEEEBSSSCB------------CCCSEEEEEHHHHHHTHH--HH-TTTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred --CCCCEEEECCCCC------------CCCCEEEEECHHHHHHHH--HH-CCCCCEEEEECCCCCCCHHHH--HHHHHCC
T ss_conf --9963699878767------------767789997689997799--73-687778999897578976899--9997357
Q ss_pred CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13410013567889989999999733187889947899883365567999991356656999999999999986689998
Q 000377 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (1605)
Q Consensus 1242 a~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~~Pie~~g~~~~~e~~Lseee~~~iI~RL~kiLrPflLR 1321 (1605)
+.++++|||||.+++..+ ..+..++ .|.+.+
T Consensus 218 ~~~~l~lSATp~~~~~~~----------------~~l~~~~---------------------------------~~~~~~ 248 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH----------------EILKEVV---------------------------------GGKVFE 248 (472)
T ss_dssp CSEEEEEESCCCCTTSGG----------------GSHHHHT---------------------------------CCEEEE
T ss_pred CCEEEEEECCCCCCCCHH----------------HHHHHHH---------------------------------CCEEEE
T ss_conf 781899932766889778----------------9999972---------------------------------985765
Q ss_pred HHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC------CCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 8666673-02753257889704439999999999997400278887------4236899999988268621110166431
Q 000377 1322 RLKHKVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKG------RSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (1605)
Q Consensus 1322 RtKkdVe-~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~~i~~~k~------k~iln~L~qLRkicnHP~L~~~~~eeid 1394 (1605)
+...++. ..+++.....+.+++++.+...|..+...+........ ..+...+. .....+..........
T Consensus 249 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~- 324 (472)
T 2fwr_A 249 LFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM---ASGYDERAYEALRAWE- 324 (472)
T ss_dssp CCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT---TTCCSSSSSTTTHHHH-
T ss_pred CCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HHCCCHHHHHHHHHHH-
T ss_conf 478987067678818999985899899999999999999999864754224466899998---7236988999999999-
Q ss_pred HCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 01788889824630037999999878743099859999742779999999986329619999589999999999999817
Q 000377 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (1605)
Q Consensus 1395 ~~i~~~~~~~lir~SgKle~L~~LL~kL~~~G~KVLIFSQft~~LdiLee~L~~rGikylrLdGsTs~eEReeiId~FN~ 1474 (1605)
.........+.|+..|.+++.. ..++++||||+++..++.+...|. +..++|.++..+|+++++.|++
T Consensus 325 -----~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 325 -----EARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp -----HHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred -----HHHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHC
T ss_conf -----9999763373899999999985--789838999797999999999748-----6556289999999999999867
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9998379998214444434866679999973899943389996600124997-949999998089999999999999997
Q 000377 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RDVLVLRFETVQTVEEQVRASAEHKLG 1553 (1605)
Q Consensus 1475 gds~~~VlLLSTkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQk-KeV~VyrLIt~~TIEEkIlera~~Kl~ 1553 (1605)
++.. +|++|+++++|+|++.+++||+||++||+..+.|+.||++|.|+. +.|.||+|++.+|+||++.++.+.|..
T Consensus 393 g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~ 469 (472)
T 2fwr_A 393 GRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAK 469 (472)
T ss_dssp SSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-------------
T ss_pred CCCC---EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 9988---8998570514846202868999899998889999876315777998539999998199853799999987650
Q ss_pred HH
Q ss_conf 97
Q 000377 1554 VA 1555 (1605)
Q Consensus 1554 l~ 1555 (1605)
.+
T Consensus 470 ~a 471 (472)
T 2fwr_A 470 GA 471 (472)
T ss_dssp --
T ss_pred CC
T ss_conf 58
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=352.30 Aligned_cols=463 Identities=15% Similarity=0.153 Sum_probs=288.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECCC-CCCCHHHHHHHHCC
Q ss_conf 9975188999999999985059885998399973799999999999984199--99899994687-51122999977679
Q 000377 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (1605)
Q Consensus 1088 gg~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~--~gPiLIVvP~S-LL~nW~~Ei~K~aP 1164 (1605)
..+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||+. ++.||..++.+|++
T Consensus 5 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 77877999999999974----99899981999718999999999999837456798699992889999999999998724
Q ss_pred --CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHH-
Q ss_conf --9609998399368999888553027753999847788600488821-246800999915853367540699999940-
Q 000377 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (1605)
Q Consensus 1165 --~l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L-~kikwdlIIIDEAHriKN~sSKlskaL~~L- 1240 (1605)
++.+..++|......... ......+|+|+|++.+........+ ....|++|||||||++.+... ....+..+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~ 156 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 156 (556)
T ss_dssp GGTCCEEECCCC-----CHH---HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHH---HHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCH-HHHHHHHHH
T ss_conf 06945999828987422289---86179999998899999999837502503077999988753588645-999999999
Q ss_pred --------HCCCEECCCCCCCCCCH-------HHHHHHHHHHCCC----CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf --------01341001356788998-------9999999733187----8899478998833655679999913566569
Q 000377 1241 --------QSSHRLLLTGTPLQNNL-------EELWALLNFLLPN----IFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (1605)
Q Consensus 1241 --------~a~~RLLLTGTPlqNnl-------~ELwsLLnFL~P~----if~s~~~F~e~F~~Pie~~g~~~~~e~~Lse 1301 (1605)
...++++|||||..++. ..+..+...+.+. .......+..++..|................
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCCCCCHHH
T ss_conf 85301368887699994785667516699999999999985398484333202677874279985379982787677599
Q ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999998668----------------------999886666730275325788970443999999999999740
Q 000377 1302 EENLLIINRLHQVLRP----------------------FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 1359 (1605)
Q Consensus 1302 ee~~~iI~RL~kiLrP----------------------flLRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~ 1359 (1605)
......+..++..+.. ++....+......+|.+ .....++..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTE 306 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHH
T ss_conf 9999999999999988863201210333344335678999999998776405432----------016789999999999
Q ss_pred C-------CCCCCCCCHHHHHHHHHHHHC----CCCCC---------CHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf 0-------278887423689999998826----86211---------101664310178888982463003799999987
Q 000377 1360 S-------IGNSKGRSVHNSVMELRNICN----HPYLS---------QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLL 1419 (1605)
Q Consensus 1360 ~-------i~~~k~k~iln~L~qLRkicn----HP~L~---------~~~~eeid~~i~~~~~~~lir~SgKle~L~~LL 1419 (1605)
. ...............+...+. +.+.. ............ .....++|+..|.++|
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~K~~~L~~~l 381 (556)
T 4a2p_A 307 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSK-----DETNENPKLEELVCIL 381 (556)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHH-----CSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHH
T ss_conf 99999999988611207899999999999987337987899999987667887642103-----7899996999999999
Q ss_pred HHHH--CCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEE
Q ss_conf 8743--09985999974277999999998632------------9619999589999999999999817-9998379998
Q 000377 1420 PKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLL 1484 (1605)
Q Consensus 1420 ~kL~--~~G~KVLIFSQft~~LdiLee~L~~r------------GikylrLdGsTs~eEReeiId~FN~-gds~~~VlLL 1484 (1605)
.+.. ..++|+||||+++.+++.|.++|... |..+..++|+++.++|.++++.|++ ++.. +|+
T Consensus 382 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLv 458 (556)
T 4a2p_A 382 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLI 458 (556)
T ss_dssp HHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEE
T ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEE---EEE
T ss_conf 99834799854999976589999999999858775500014787367765565669899999999840469658---999
Q ss_pred ECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21444443486667999997389994338999660012499794999999808999999999999999797431026866
Q 000377 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564 (1605)
Q Consensus 1485 STkAGGeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l~~kVI~aG~f 1564 (1605)
+|+++++|||++.+++||+||+|||+..+.|++|| |+.+++.+|.|++.+++|++ ......|..+...++..-
T Consensus 459 aT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i-- 531 (556)
T 4a2p_A 459 ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI-- 531 (556)
T ss_dssp EEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH--
T ss_pred ECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH--
T ss_conf 76704337775217889991899978899886387----87888418999827636777-775579999999999972--
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 88899999999999999997
Q 000377 1565 DNNTSAEDRREYLESLLREC 1584 (1605)
Q Consensus 1565 d~~~s~ee~re~Le~LLe~~ 1584 (1605)
.....++....+..+-++.
T Consensus 532 -~~~~~~~~~~~i~~~q~~~ 550 (556)
T 4a2p_A 532 -QKWDEETFAKKIHNLQMKE 550 (556)
T ss_dssp -HTSCHHHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHHHH
T ss_conf -0689678999999999999
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=342.96 Aligned_cols=467 Identities=13% Similarity=0.116 Sum_probs=280.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECCC-CCCCHHHHHHHHCC-
Q ss_conf 975188999999999985059885998399973799999999999984199--99899994687-51122999977679-
Q 000377 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP- 1164 (1605)
Q Consensus 1089 g~LRPYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALIa~Lle~k~~--~gPiLIVvP~S-LL~nW~~Ei~K~aP- 1164 (1605)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||+. ++.||..++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 8876999999999967----998899959998399999999999998466678987999968889999999999987053
Q ss_pred -CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHHH-
Q ss_conf -9609998399368999888553027753999847788600488821-2468009999158533675406999999400-
Q 000377 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHYQ- 1241 (1605)
Q Consensus 1165 -~l~vivy~Gs~~~R~kl~~~~i~~~~fdVVITTYe~L~k~~Dr~~L-~kikwdlIIIDEAHriKN~sSKlskaL~~L~- 1241 (1605)
.+.+..++|........ .......+|+|+||+.+........+ ....|++|||||||++.+...........+.
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH---HHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 894799975997401228---98736999999789999999860763440107789997754568733499999999975
Q ss_pred --------CCCEECCCCCCCCCC-------HHHHHHHHHHHCCCCC----CCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf --------134100135678899-------8999999973318788----994789988336556799999135665699
Q 000377 1242 --------SSHRLLLTGTPLQNN-------LEELWALLNFLLPNIF----NSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (1605)
Q Consensus 1242 --------a~~RLLLTGTPlqNn-------l~ELwsLLnFL~P~if----~s~~~F~e~F~~Pie~~g~~~~~e~~Lsee 1302 (1605)
..++++|||||.+++ ...++.+..++....+ .....+..++..|.................
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred HHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 41124688873999926766676522999999999999856980663323578889864699826999826766671999
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999866899-----------------------9886666730275325788970443999999999999740
Q 000377 1303 ENLLIINRLHQVLRPFV-----------------------LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 1359 (1605)
Q Consensus 1303 e~~~iI~RL~kiLrPfl-----------------------LRRtKkdVe~eLP~K~E~vI~veLS~~Qk~LYk~I~~~l~ 1359 (1605)
.....+.+++.++..++ ....+......+|.. .....++..+.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADK----------EEESRVCKALFLYTS 305 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHH
T ss_conf 9999999999999999876544431223334410246899999987666504660----------467789999999999
Q ss_pred C-------CCCCCCCCHHHHHHHHHHHHC---CCCCCCHHHHHHHHCCCC-----CCCCHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 0-------278887423689999998826---862111016643101788-----8898246300379999998787430
Q 000377 1360 S-------IGNSKGRSVHNSVMELRNICN---HPYLSQLHAEEVDTLIPK-----HYLPPIVRLCGKLEMLDRLLPKLKA 1424 (1605)
Q Consensus 1360 ~-------i~~~k~k~iln~L~qLRkicn---HP~L~~~~~eeid~~i~~-----~~~~~lir~SgKle~L~~LL~kL~~ 1424 (1605)
. ............+..+...+. ...+......-...+... .........++|+..|.++|.++..
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999998752200227999999999999876336666789999998645566654204777689899999999999715
Q ss_pred --CCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEEECCCC
Q ss_conf --9985999974277999999998632------------9619999589999999999999817-999837999821444
Q 000377 1425 --TDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAG 1489 (1605)
Q Consensus 1425 --~G~KVLIFSQft~~LdiLee~L~~r------------GikylrLdGsTs~eEReeiId~FN~-gds~~~VlLLSTkAG 1489 (1605)
.++|+||||+++.+++.|..+|... |..+..++|+++..+|.++++.|++ ++.. +|++|+++
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~ 462 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVA 462 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCT
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEE---EEEECCHH
T ss_conf 689966999967689999999999628676730024897058753345668899999999974279713---99981605
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 44348666799999738999433899966001249979499999980899999999999999979743102686688899
Q 000377 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTS 1569 (1605)
Q Consensus 1490 GeGLNLq~ADtVIiyDpdWNP~~d~QAiGRAhRIGQkKeV~VyrLIt~~TIEEkIlera~~Kl~l~~kVI~aG~fd~~~s 1569 (1605)
++|||++.+++||+||+||||..+.|++|| |+.+.+.+|.|++.+++++. ......|..+.++.+..-. ...
T Consensus 463 ~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~---~~~ 534 (555)
T 3tbk_A 463 DEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESILRLQ---TWD 534 (555)
T ss_dssp TCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHHH---HSC
T ss_pred HCCCCCCCCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEECCCCHHHH-HHHHHHHHHHHHHHHHHCC---CCC
T ss_conf 327866037989991799977887775276----76789559999758777789-9874478999999998445---788
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 000377 1570 AEDRREYLESLLRE 1583 (1605)
Q Consensus 1570 ~ee~re~Le~LLe~ 1583 (1605)
.++....+..+-+.
T Consensus 535 ~~~~~~~i~~~~~~ 548 (555)
T 3tbk_A 535 EMKFGKTVHRIQVN 548 (555)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 57788999999999
Done!