BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000378
(1605 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 1401 LEQNQLPDALSCFDEA-FLAL---AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKV 1456
++ N++ +A CF +LAL A ++ A C +Y +A++ E RL +
Sbjct: 1007 VKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEE 1066
Query: 1457 QGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYA----KQMLEL 1512
A LS + S LQ H I +R AI + +++NY A ++L+L
Sbjct: 1067 DTKRAL--------ELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 1513 LLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRL-STIGYDVCDLCG 1571
S A + +L D + DP + C TL+ + S +DVC +CG
Sbjct: 1119 AESGPAAEAANRAITLGDRNPHDAFEIE-YDP-HVEMRICPKTLTPVYSGDDFDVCSVCG 1176
Query: 1572 AKF-SALSAPGCIICGMGSI 1590
A + C +C +G I
Sbjct: 1177 AVYHKGYVNEVCTVCDVGGI 1196
>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2
Length = 1421
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 1182 PGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQ 1241
P S+ L L+ QP A N T P SSAP G E P A +S AQ Q
Sbjct: 418 PASEPLN-LTQQP--ADKVNNTTNPTSSAPQGCLGNEP--FKPPPPLPVRASTSAHAQMQ 472
Query: 1242 PIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGG 1301
E + + + ++++ P G + GK P + P++ S L D G
Sbjct: 473 KFNESSYASHVSAVKLGQKSPHAGQL---------QLTKGKCCPQKRECPSSQSELSDCG 523
Query: 1302 VPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1351
Q+ Q +I S D G PQ Q P P P +P
Sbjct: 524 YGTQVENQESISTSSND--DDG--PQGKPQHQKP------PCNTKPRNKP 563
>sp|P19835|CEL_HUMAN Bile salt-activated lipase OS=Homo sapiens GN=CEL PE=1 SV=3
Length = 753
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 1291 PAADSGLP------DGGVPP--QIAPQPAIPVESIGLPDGGVPP----QSSGQTPFPYQS 1338
P DSG P D G PP A PV G D G PP SG P P
Sbjct: 617 PTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTG--DSGAPPVPPTGDSGAPPVPPTG 674
Query: 1339 QVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANP 1372
P VPP+ D A VP +GDSG P P
Sbjct: 675 DAGPPPVPPTG---DSGAPPVPPTGDSGAPPVTP 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,412,412
Number of Sequences: 539616
Number of extensions: 26169277
Number of successful extensions: 78102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 872
Number of HSP's that attempted gapping in prelim test: 74633
Number of HSP's gapped (non-prelim): 3292
length of query: 1605
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1474
effective length of database: 120,879,763
effective search space: 178176770662
effective search space used: 178176770662
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)