Query 000378
Match_columns 1605
No_of_seqs 158 out of 227
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 18:49:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000378.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_154-158//hhsearch_pdb/000378hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 1.0 1 1 615.7 20.2 279 1176-1597 17-311 (320)
2 3mv2_A Coatomer subunit alpha; 1.0 1 1 614.4 16.9 275 1176-1597 29-320 (325)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 390.0 57.7 693 11-980 6-777 (814)
4 1vyh_C Platelet-activating fac 1.0 1 1 228.0 25.1 195 10-236 100-330 (410)
5 4gqb_B Methylosome protein 50; 1.0 1 1 227.7 22.2 186 23-235 32-248 (344)
6 1nr0_A Actin interacting prote 1.0 1 1 222.6 25.2 185 23-235 20-223 (611)
7 1nr0_A Actin interacting prote 1.0 1 1 221.9 23.0 204 3-234 44-271 (611)
8 4h5i_A Guanine nucleotide-exch 1.0 1 1 220.9 22.4 198 23-241 135-351 (365)
9 1vyh_C Platelet-activating fac 1.0 1 1 217.8 25.2 148 58-233 105-265 (410)
10 3ow8_A WD repeat-containing pr 1.0 1 1 217.2 24.6 187 15-233 30-237 (321)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=615.67 Aligned_cols=279 Identities=17% Similarity=0.255 Sum_probs=260.4
Q ss_pred CCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4345------7888633344567999889999876789899999647643335787789998776556557898821001
Q 000378 1176 RTKS------LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQ 1249 (1605)
Q Consensus 1176 ~~~s------~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~pipedff~ 1249 (1605)
.+|| +++|+||+| |++|+|| +|+
T Consensus 17 ~~nS~laadhvaAGsFe~A----------------------------~~lLnrQ------------~Gi----------- 45 (320)
T 3mkr_B 17 CNNSQLPVDHILAGSFETA----------------------------MRLLHDQ------------VGV----------- 45 (320)
T ss_dssp HHHCCCHHHHHHTTCHHHH----------------------------HHHHHHH------------SCB-----------
T ss_pred HHCCCCHHHHHHCCCHHHH----------------------------HHHHHHH------------HCC-----------
T ss_conf 8758869999970689999----------------------------9999987------------385-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47731111346899853222233323355678768999898887679999999998999998654445899999999888
Q 000378 1250 NTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSS 1329 (1605)
Q Consensus 1250 ~t~~~~~~~~~~p~~~~~l~~~~q~~~g~~~~~~~~n~~~~~~~~~~lp~ggvppq~~~qp~~~~~~igLpdgGvppq~~ 1329 (1605)
+||.|++..|+++|. + +++++|
T Consensus 46 --------vnf~PLk~~F~~~y~------------~-------s~~~l~------------------------------- 67 (320)
T 3mkr_B 46 --------TQFGPYKQLFLQTYA------------R-------GRTTYQ------------------------------- 67 (320)
T ss_dssp --------CCCGGGHHHHHHHHT------------T-------SCEEEC-------------------------------
T ss_pred --------CCCHHHHHHHHHHHH------------H-------HHHHCC-------------------------------
T ss_conf --------175566999999999------------8-------752135-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCHHH
Q ss_conf 9999998888888899998885311123478999999999999999988889977777036-999999998872199478
Q 000378 1330 GQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPD 1408 (1605)
Q Consensus 1330 ~~~~~p~q~~~~~~~~~~~~~Pl~l~~~~~p~~~~s~~~p~~~~s~p~~v~p~~vPr~l~~-~~~LK~Gyk~~t~GKF~E 1408 (1605)
..+++|||.++++|++++ +.++.++| .+|++++. .++||+||++||+|||+|
T Consensus 68 ---------------~~~~~p~l~~~~~r~~~~-----------~~~~~~lP-~i~~~l~~l~~~Lk~gyk~~t~gKf~e 120 (320)
T 3mkr_B 68 ---------------ALPCLPSMYGYPNRNWKD-----------AGLKNGVP-AVGLKLNDLIQRLQLCYQLTTVGKFEE 120 (320)
T ss_dssp ---------------SSTTSCCEEECCBTTTTT-----------CCSSSCCB-CCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------CCCCCCCCHHHHCCCCCC-----------CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ---------------778997402342178422-----------36545788-766689999999999999986578899
Q ss_pred HHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 9999999998----882377306889999999999999981089999841037998314524899999987159999556
Q 000378 1409 ALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTK 1484 (1605)
Q Consensus 1409 Al~~Fr~IL~----~vV~s~~E~~EvkelI~iCrEYilAlsLL~ELeRr~~L~~~~d~~kn~kR~LELAAYFT~c~LQp~ 1484 (1605)
|+.+||+||| ++|++++|++|++++|++||||++||+| |++||+ +++.+ +.+.+|++|||||||||+|||.
T Consensus 121 Al~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~i--El~Rr~-l~~~~--~~~~kR~lELAAYFT~c~Lqp~ 195 (320)
T 3mkr_B 121 AVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSM--ETERKK-LPKET--LEQQKRICEMAAYFTHSNLQPV 195 (320)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH--HHHHTT-SCCCS--HHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-CCCCC--CHHHHHHHHHHHHHCCCCCCHH
T ss_conf 999999999974501116687799999999999999999999--999974-36677--3048899999998664887489
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEECCCCEECCC
Q ss_conf 8999999999999980039999999999980399-0179999999999973699875569--887994154055211159
Q 000378 1485 HRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST 1561 (1605)
Q Consensus 1485 Hr~LaLRsAM~~a~K~KNY~TAAsFArRLLel~p-~~~aeqARKILa~CEqnptDaveId--~~EnpF~ICaaSltPIY~ 1561 (1605)
|++|+||+||+++||+|||+||++||||||+++| +++++|||||+++|||+|+|+++|| ++ +||+||++||||||+
T Consensus 196 H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~da~eidyD~~-~~f~iCa~s~tPIY~ 274 (320)
T 3mkr_B 196 HMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMH-NPFDICAASYRPIYR 274 (320)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCBSSCCSCCTT-SCCCBBTTTCCBCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCEECCCCCCCCC
T ss_conf 9999999999999986019999999999986499989999999999998468987631478887-863021477765669
Q ss_pred -CCCCCCCCCCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf -99422589983013789-9978642410232788787
Q 000378 1562 -IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1597 (1605)
Q Consensus 1562 -~~~V~CPfCGAkY~~~y-G~lC~VC~L~eIG~~~~~~ 1597 (1605)
+++|+||||||+|+++| |++|+||+||+||+ |+.+
T Consensus 275 g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~-~~~G 311 (320)
T 3mkr_B 275 GKPVEKCPLSGACYSPEFKGQICKVTTVTEIGK-DVIG 311 (320)
T ss_dssp TSCCEECTTTCCEECGGGTTSBCTTTSSBBSSC-CCCC
T ss_pred CCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 998703789888636634899888785740287-6337
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=1.00 E-value=1 Score=614.40 Aligned_cols=275 Identities=17% Similarity=0.240 Sum_probs=258.6
Q ss_pred CCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4345------7888633344567999889999876789899999647643335787789998776556557898821001
Q 000378 1176 RTKS------LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQ 1249 (1605)
Q Consensus 1176 ~~~s------~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~pipedff~ 1249 (1605)
.+|| +++|+||+| |++|+|| +|+
T Consensus 29 ~~nS~laadhvAAGsFetA----------------------------m~lLnrQ------------vGi----------- 57 (325)
T 3mv2_A 29 IKNSKLPAVLVAAGAFDAA----------------------------VQALSKQ------------VGV----------- 57 (325)
T ss_dssp HHHCCSHHHHHHTTCHHHH----------------------------HHHHHHH------------HCB-----------
T ss_pred HHCCCCHHHHHHCCCHHHH----------------------------HHHHHHH------------HCC-----------
T ss_conf 8748869999970689999----------------------------9999987------------385-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47731111346899853222233323355678768999898887679999999998999998654445899999999888
Q 000378 1250 NTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSS 1329 (1605)
Q Consensus 1250 ~t~~~~~~~~~~p~~~~~l~~~~q~~~g~~~~~~~~n~~~~~~~~~~lp~ggvppq~~~qp~~~~~~igLpdgGvppq~~ 1329 (1605)
+||.|++..|+++|. + +++++|
T Consensus 58 --------vnf~PLk~~F~~~y~------------~-------s~~~l~------------------------------- 79 (325)
T 3mv2_A 58 --------VKLEPLKKYFTNIYE------------G-------CRTYIP------------------------------- 79 (325)
T ss_dssp --------CCCGGGHHHHHHHHH------------H-------TEEEEC-------------------------------
T ss_pred --------CCCHHHHHHHHHHHH------------H-------HHHHCC-------------------------------
T ss_conf --------175566999999999------------8-------862036-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCHH
Q ss_conf 999999888888889999-8885311123478999999999999999988889977777036-99999999887219947
Q 000378 1330 GQTPFPYQSQVLPAQVPP-STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLP 1407 (1605)
Q Consensus 1330 ~~~~~p~q~~~~~~~~~~-~~~Pl~l~~~~~p~~~~s~~~p~~~~s~p~~v~p~~vPr~l~~-~~~LK~Gyk~~t~GKF~ 1407 (1605)
..+ ++|||.++++|++++ ++++.++| .+| +++. .++||+||++||+|||+
T Consensus 80 ---------------~~~~~lp~l~~~~~r~~~e-----------~~~~~~lP-~i~-~l~~L~~~Lk~gyk~~t~gKf~ 131 (325)
T 3mv2_A 80 ---------------STPCELPAQLGYVRAYDDT-----------VSEDQILP-YVP-GLDVVNEKMNEGYKNFKLNKPD 131 (325)
T ss_dssp ---------------CSSTTSCCEEEECBSSCSS-----------SCGGGCCB-CCC-CHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------CCCCCCCCCHHHHCCCCCC-----------CCCCCCCC-CCC-CHHHHHHHHHHHHHHHHCCCHH
T ss_conf ---------------6777787612553077422-----------36546788-878-8999999999999998658889
Q ss_pred HHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 89999999998----88237730688999999999999998108999984103799831452489999998715999955
Q 000378 1408 DALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQT 1483 (1605)
Q Consensus 1408 EAl~~Fr~IL~----~vV~s~~E~~EvkelI~iCrEYilAlsLL~ELeRr~~L~~~~d~~kn~kR~LELAAYFT~c~LQp 1483 (1605)
||+.+||+||| ++|++++|++|++++|++||||++||+| |++||+ ++ +++ ++ |++|||||||||+|||
T Consensus 132 eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~i--El~Rr~-l~-~~~-~k---R~lELAAYFT~c~LQp 203 (325)
T 3mv2_A 132 IAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSI--ELERRS-LK-EGN-TV---RMLELAAYFTKAKLSP 203 (325)
T ss_dssp HHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH--HHHHHT-CC-TTC-HH---HHHHHHHHGGGSCCCH
T ss_pred HHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-CC-CCC-HH---HHHHHHHHHCCCCCCH
T ss_conf 9999999999975302216677799999999999999999989--999873-27-542-77---8999999866488748
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEECCCCEECC
Q ss_conf 68999999999999980039999999999980399-0179999999999973699875569--88799415405521115
Q 000378 1484 KHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLS 1560 (1605)
Q Consensus 1484 ~Hr~LaLRsAM~~a~K~KNY~TAAsFArRLLel~p-~~~aeqARKILa~CEqnptDaveId--~~EnpF~ICaaSltPIY 1560 (1605)
.|++|+||+||+++||+|||+||++||||||+++| +++++|||||+++|||+|+|+++|| ++ |||+||++||||||
T Consensus 204 ~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD~~-~~F~iCa~s~tPIY 282 (325)
T 3mv2_A 204 IHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPY-AKFDICAATYKPIY 282 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCCTT-SCEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEECCCCCCCC
T ss_conf 99999999999999986009999999999986589989999999999998468987532688888-87315347750256
Q ss_pred C-CCCCCCCCCCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 9-99422589983013789-9978642410232788787
Q 000378 1561 T-IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1597 (1605)
Q Consensus 1561 ~-~~~V~CPfCGAkY~~~y-G~lC~VC~L~eIG~~~~~~ 1597 (1605)
+ +++|+||||||+|+++| |++|+||+||+||+ |+.+
T Consensus 283 ~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~-~a~G 320 (325)
T 3mv2_A 283 EDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGA-PASG 320 (325)
T ss_dssp SSSCEEECTTTCCEEEGGGTTSBCSSSSCBBTTC-CCCC
T ss_pred CCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 9998703788888625634899888785742188-7635
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=389.96 Aligned_cols=693 Identities=18% Similarity=0.222 Sum_probs=456.3
Q ss_pred CCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 2213-589999999814574789645666-4391599983667862520-158955024321589996589973598087
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
.+.+ +|.+ +|.|++|||+|.+||+ +.+..|.+||..+|..+.. ..|..+|..++||| +|..|+++..|++|+
T Consensus 6 ~~~~~~h~~----~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 6 KKTFSNRSD----RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIR 80 (814)
T ss_dssp EEEEEEECS----CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEE
T ss_pred CEEEECCCC----CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCEEE
T ss_conf 004505898----568999889999899994799899998999916778733899688999968-999899992899499
Q ss_pred EECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCE-EEEEEEECCCCCCCCCC
Q ss_conf 430688842------------897379855211-1258616712478753178122334420-18764305899853344
Q 000378 88 SCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSV-TVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 88 ~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~-~~vgt~eG~~~~~~ik~ 153 (1605)
.||..+.+. ++.|+|+++.++ ++.|++| +. |+ ..+. ..+.++.+|..
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-------~v--w~----~~~~~~~~~~~~~~~~------ 141 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV-------KL--WN----WENNWALEQTFEGHEH------ 141 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEE-------EE--EE----GGGTSEEEEEEECCSS------
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE-------EE--EE----CCCCCEEEEEECCCCC------
T ss_conf 99899995879981689978999995899989999289989-------99--98----9999548799837998------
Q ss_pred CCCCCCEEEEEEC-CCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCC-CCCEEEEECC--CCEEEEEECCCCEEEEE
Q ss_conf 4578822764316-987699981486289873134319998852242222-3302476527--83089986589909963
Q 000378 154 DLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL-LGAGAFAFHP--TLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 154 dlkkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~-~g~~a~Af~P--~g~~l~~G~~dgtl~~W 229 (1605)
+|.+++|+| ++..|++++.||.|+.|++.++....++.. +. .++.+++|+| ++.++++|+.||++.+|
T Consensus 142 ----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 142 ----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp ----CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred ----CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC----CCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf ----6889999769999999994889499998999961069835----88897799999977999899999389979999
Q ss_pred ECCCCCCEEEEECC-CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCEECCC-------------C
Q ss_conf 25899980463036-525788798528999863444445577643330200024--8886010077-------------5
Q 000378 230 DVSIERPSMIGMDG-SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ--QGGEAVYPLP-------------R 293 (1605)
Q Consensus 230 ~vs~~~~~m~g~~g-~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~--~~g~~vyp~p-------------~ 293 (1605)
++.+.++. .-+.+ .-.| +.+..+|+.+ .+++- .|--.+|-+. +
T Consensus 214 d~~~~~~~-~~~~~~~~~v--~~~~~~~~~~------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 214 DYQTKSCV-ATLEGHMSNV--SFAVFHPTLP------------------IIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (814)
T ss_dssp ETTTTEEE-EEEECCSSCE--EEEEECSSSS------------------EEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred ECCCCCEE-EEECCCCCCE--EEEEECCCCC------------------EEEEEECCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 99999188-9984788887--8999859999------------------9999908996999989999477784068886
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43200134410345334402588532221467674446788887411598457778664067775644102789999998
Q 000378 294 VRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEH 373 (1605)
Q Consensus 294 ~~~~~~h~~~n~~~l~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~s~~~~~~~~l~~~~s~g~~~~h~~q~~~~~~ 373 (1605)
+..+.++|.-.
T Consensus 273 v~~~~~~~~~~--------------------------------------------------------------------- 283 (814)
T 3mkq_A 273 SWCIATHPTGR--------------------------------------------------------------------- 283 (814)
T ss_dssp EEEEEECTTCG---------------------------------------------------------------------
T ss_pred EEEEEECCCCC---------------------------------------------------------------------
T ss_conf 79999924999---------------------------------------------------------------------
Q ss_pred HHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEE
Q ss_conf 824776213002568876500123656677887666407861488877777754566533334434-7954664204799
Q 000378 374 HLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNR-ENRVLHYPVRAFY 452 (1605)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~l~~~~~~d~~~~~~d~pv~~~~h~eln~f~~-dngvl~fp~~~fy 452 (1605)
..++....-+| +.+.+... +.+.. .+++.-.++.. ........+....
T Consensus 284 ---------------~~~~~~~~~~~------------~~~~~~~~---~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 332 (814)
T 3mkq_A 284 ---------------KNYIASGFDNG------------FTVLSLGN---DEPTL-SLDPVGKLVWSGGKNAAASDIFTAV 332 (814)
T ss_dssp ---------------GGEEEEEETTE------------EEEEECSC---CSCCE-EECSSSEEEEECCTTSCTTCEEEEE
T ss_pred ---------------CEEEEEEECCC------------EEEEECCC---CCCEE-EECCCCCEEEECCCCCCCEEEEEEE
T ss_conf ---------------50999990798------------79997679---97416-7779987899776366411246653
Q ss_pred EECCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 80821788754668431011023458998311561123463453699999625960179998732575445777753248
Q 000378 453 VDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKG 532 (1605)
Q Consensus 453 i~g~~L~aynL~sg~~s~~~sL~~~i~g~~~~~pk~l~ys~~~~~fLV~~e~~g~t~elvl~r~~~~a~~~~skg~~~~G 532 (1605)
++.. .++..+... ...... .+.....++.+.++|..+.+++.. + +.+.+|.. ... .....+ ..
T Consensus 333 ~~~~----~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~spdg~~la~~~--~---~~~~i~~~-~~~-~~~~~~---~i 395 (814)
T 3mkq_A 333 IRGN----EEVEQDEPL-SLQTKE--LGSVDVFPQSLAHSPNGRFVTVVG--D---GEYVIYTA-LAW-RNKAFG---KC 395 (814)
T ss_dssp CCSC----CCCCSSSCB-CCCCEE--ECCCSSCCSEEEECTTSSEEEEEE--T---TEEEEEET-TTT-EEEEEE---EC
T ss_pred CCCC----CCCCCCCCC-EEEEEC--CCCCCCCCCEEEECCCCCEEEEEC--C---CEEEEEEC-CCC-CCCCCC---CE
T ss_conf 0465----555567620-146511--788765774068999999899942--9---88999987-454-456799---54
Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 73599789998089980799828999748951241001267643479877778775458844433223222213676520
Q 000378 533 RDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIEST 612 (1605)
Q Consensus 533 ~dA~FIG~nd~qfAILd~dg~~l~Vy~l~~~~~~~~~~~~~~v~~~~~~~~~~~~s~kgP~~f~f~~~V~riFsTPl~~v 612 (1605)
.+.+|- ++.+.+|+.+.+++ +.++..-.... ..+. ...|. .+.+|+ +.
T Consensus 396 ~~~~~s-pdg~~la~~~~~g~-v~l~~~~~~~~---------------------~~v~---~~~~s--~dg~~~----~~ 443 (814)
T 3mkq_A 396 QDFVWG-PDSNSYALIDETGQ-IKYYKNFKEVT---------------------SWSV---PMHSA--IDRLFS----GA 443 (814)
T ss_dssp SEEEEC-TTSSCEEEECTTCC-EEEEETTEECT---------------------TCCC---CCSSC--CCEEEC----SS
T ss_pred EEEEEE-CCCCEEEEEECCCC-EEEEECCCCCC---------------------CEEE---CCCCC--CCCEEC----CE
T ss_conf 799994-79985999968983-99997777752---------------------4397---37867--552365----46
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEEE------ECCEEEEEE-
Q ss_conf 6871069969997522543457676510110368804453057873899994014675389997------222489981-
Q 000378 613 LMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVL------TTQRVLIVS- 685 (1605)
Q Consensus 613 Lyf~~~g~~I~~sKl~~g~rlsts~~~~i~tk~e~k~~~~L~~nE~V~qV~WQ~~~~g~vaAIL------T~qRIlIvs- 685 (1605)
|..++.+..|.+= ++.+. +....+.... ..|.|+.+ |...++. ++.++++..
T Consensus 444 l~~~~~d~~v~~~--------------d~~~~---~~~~~~~~~~--~~v~~s~d--g~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 444 LLGVKSDGFVYFF--------------DWDNG---TLVRRIDVNA--KDVIWSDN--GELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp SEEEEETTEEEEE--------------CTTTC---CEEEEESSCE--EEEEECTT--SSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEEECCCEEEEE--------------ECCCC---CEEEEEECCC--CEEEECCC--CCEEEEEECCCCCCCCEEEEEEE
T ss_conf 9999669989999--------------98769---5999973588--87999699--99999998676667742899995
Q ss_pred ---------------------CCCCHHHCCCCCCCCCCCCCCEEEECCCEEEEEC-HHHHEEECCCCCCCEEEECCCCCE
Q ss_conf ---------------------5510111134457899987203431156367550-313201011798312785048955
Q 000378 686 ---------------------ADLDILASSSTKFDKGLPSFRSLLWVGPALLFST-ATAISVLGWDGKVRNILSISMPNA 743 (1605)
Q Consensus 686 ---------------------anL~ii~s~~~~~~~g~~~IkS~~W~gpaLLyST-~thV~yl~wdG~~~~I~SLs~p~v 743 (1605)
..++.++++++ .|+|..|++.+++|+| .+++.|. .+|+.+.+..++.+ +
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~s~~w~~~~~i~~t~~~~~~~~-~~~~~~~~~~~~~~-~ 573 (814)
T 3mkq_A 503 NKDAYLEAANNGNIDDSEGVDEAFDVLYELSE-------SITSGKWVGDVFIFTTATNRLNYF-VGGKTYNLAHYTKE-M 573 (814)
T ss_dssp CHHHHHHHHHHTCCBTTTBCTTTEEEEEEECS-------CCSEEEEETTEEEEECTTSEEEEE-ETTEEEEEEECSSC-C
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHEEEEEEECC-------EEEEEEEECCEEEEECCCCEEEEE-ECCEEEEEEECCCC-E
T ss_conf 46886666641687621250222136457642-------787659808889997688708999-69866899998966-7
Q ss_pred EEEEE-ECCCEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC-CCCCCHHHHH
Q ss_conf 89986-237468706898897777633886002320356999997323366531029999999871134-5655877999
Q 000378 744 VLVGA-LNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD-SLRITPRSLD 821 (1605)
Q Consensus 744 ~Lvg~-l~DRlL~a~~~~~~Prqk~~veI~~~~vgLlEpLliGlatl~~~~e~k~dl~~~L~~IisrfD-Ssrvs~~~Ld 821 (1605)
++++. ..++.+++.+++.+++ ...++. .+ +.|+.+.+...|++ ++..++.... .... ++++.
T Consensus 574 ~~~~~~~~~~~l~~~d~~~~~~---~~~l~~-----~~-~~~~~~~~~~~~~~------a~~~~l~~i~~~~~~-~~~~~ 637 (814)
T 3mkq_A 574 YLLGYLARDNKVYLADREVHVY---GYEISL-----EV-LEFQTLTLRGEIEE------AIENVLPNVEGKDSL-TKIAR 637 (814)
T ss_dssp EEEEEEGGGTEEEEECTTCCEE---EEECCH-----HH-HHHHHHHHTTCHHH------HHHHTGGGCCCHHHH-HHHHH
T ss_pred EEEEEEECCCEEEEECCCCCEE---EEEECC-----HH-HHHHHHHHHCCHHH------HHHHHHHCCCCHHHH-HHHHH
T ss_conf 9999983299999992888879---999890-----99-99969987079999------998887428846789-99999
Q ss_pred HHHCCCCCCCCHHHHHHCCCCCCHH--HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9971999754203452103994011--25588998811888999988999731179999999136789789999999962
Q 000378 822 ILAKGPPVCGDLAVSLSQAGPQFTQ--VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKY 899 (1605)
Q Consensus 822 ~L~k~g~~~~dLA~sla~~~pqf~q--~~R~~~Aikag~~e~A~s~lk~e~~R~~d~P~~p~ts~l~~R~r~Lgreai~~ 899 (1605)
+|++.+ ++|.|+ ++.+ ..||.+|++++||+.|+++++. ++.+ ++|.+ ||..|++.
T Consensus 638 ~l~~~~--~~~~a~-------~~~~~~~~~f~~~l~~~~~~~A~~~~~~-----~~~~------~~W~~---la~~al~~ 694 (814)
T 3mkq_A 638 FLEGQE--YYEEAL-------NISPDQDQKFELALKVGQLTLARDLLTD-----ESAE------MKWRA---LGDASLQR 694 (814)
T ss_dssp HHHHTT--CHHHHH-------HHCCCHHHHHHHHHHHTCHHHHHHHHTT-----CCCH------HHHHH---HHHHHHHT
T ss_pred HHHHCC--CHHHHE-------ECCCCCCHHEEHHHHCCCHHHHHHHHHH-----HCCH------HHHHH---HHHHHHHC
T ss_conf 998689--868960-------5278931425021450999999999986-----1767------68999---99999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 792469999999983798998997708999999999999970699789999--------998642313798513667775
Q 000378 900 GQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTGWTQGIFANFA 971 (1605)
Q Consensus 900 Gq~~~Ake~fq~~~~fe~ll~L~i~~gn~~aLrrmak~aE~~~~D~elr~~--------~eRIl~~rs~g~~q~~~A~~~ 971 (1605)
|+++.|++||++++||+++++||.+.+|.+++.+|+++++. .++.+.+++ .+.+.++++.+..+ .|+..
T Consensus 695 ~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~--~A~~l 771 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAFNAYWIAGDIQGAKDLLIKSQRFS--EAAFL 771 (814)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--HHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHH
T ss_conf 99899999998702713558998772999999999999998-5866799999988099999999999869947--89999
Q ss_pred HHCCCCCCC
Q ss_conf 411477799
Q 000378 972 AESMVPKGP 980 (1605)
Q Consensus 972 A~s~~p~G~ 980 (1605)
|+. +||
T Consensus 772 A~~---~~~ 777 (814)
T 3mkq_A 772 GST---YGL 777 (814)
T ss_dssp HHH---TTC
T ss_pred HHH---HCC
T ss_conf 987---099
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=228.03 Aligned_cols=195 Identities=19% Similarity=0.207 Sum_probs=175.4
Q ss_pred CCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 12213-589999999814574789645666-4391599983667862520-15895502432158999658997359808
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
....+ ||.. .|.|++|||++.+|++ +.|..|++||..+|..+.+ .+|..+|..++|+| +|..+++++.|++|
T Consensus 100 ~~~~l~gh~~----~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 100 EKYALSGHRS----PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTI 174 (410)
T ss_dssp CSCEEECCSS----CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred CEEEECCCCC----CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEE
T ss_conf 3076616677----689999969999899993898599998999937788816678687899859-99999999189819
Q ss_pred EEECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 7430688842------------897379855211-125861671247875317812233442018764305899853344
Q 000378 87 RSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 87 ~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
++||+.+.+. ++.|+|++..+. +|.|++| +. |. ..++..+.++.||..
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i-------~~--wd----~~~~~~~~~~~~h~~------ 235 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI-------KM--WE----VQTGYCVKTFTGHRE------ 235 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE-------EE--EE----TTTCCEEEEEECCSS------
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEE-------EE--EE----CCCCCEEEEEECCCC------
T ss_conf 999589982669982899977899996799999999689969-------99--98----999948999927886------
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCC--------------------
Q ss_conf 457882276431698769998148628987313431999885224222233024765278--------------------
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-------------------- 213 (1605)
Q Consensus 154 dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-------------------- 213 (1605)
.|.+++++|++.+|++++.|+.||+|++.++....++.. |...+.+++|+|+
T Consensus 236 ----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 236 ----WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE----HRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred ----CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC----CCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCC
T ss_conf ----289999989999999991899099998989743667337----874589999858655431012125555566788
Q ss_pred CEEEEEECCCCEEEEEECCCCCC
Q ss_conf 30899865899099632589998
Q 000378 214 LEWLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 214 g~~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
+.++++|+.||++++|++.+...
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEE
T ss_pred CCEEEEEECCCEEEEEECCCCCE
T ss_conf 88999993898499998899966
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=227.74 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=96.2
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCC------------CEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEC
Q ss_conf 981457478964566643915999836678------------62520158955024321589996589973598087430
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTG------------SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG------------~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
.+.+++|+|||++|+++-+..+++||..+. .......+..+|..++||| ++ .+++++.|++||+||
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEC-CC-EEEEEECCCEEEEEE
T ss_conf 8889999899999999908956876230565036555677654666603679878999929-98-299998979899996
Q ss_pred CCCCC----------------EEEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 68884----------------2897379855211-125861671247875317812233442018764305899853344
Q 000378 91 FDTEQ----------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 91 ~~~~q----------------~~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
+.+.+ ++++|+|+++.++ +|.|++| ++ |+ ..+...+.++.||..
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i-------~i--wd----~~~~~~~~~~~~h~~------ 170 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI-------KV--WD----LAQQVVLSSYRAHAA------ 170 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE-------EE--EE----TTTTEEEEEECCCSS------
T ss_pred CCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEE-------EE--EE----CCCCCEEEEECCCCC------
T ss_conf 538874358601346789978999998998999999498939-------99--99----999969999757688------
Q ss_pred CCCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCC-CEEEEEECCCCEEEEEEC
Q ss_conf 4578822764316987-69998148628987313431999885224222233024765278-308998658990996325
Q 000378 154 DLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 154 dlkkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-g~~l~~G~~dgtl~~W~v 231 (1605)
+|.+++|+|++. +|++++.|+.||+||+.++....++.. ..|...+.+++|+|+ ++++++|+.||+|++|++
T Consensus 171 ----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 ----QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp ----CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ----CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEC--CEEECCCEEEEECCCCCCCEEEECCCCCEEEEEC
T ss_conf ----5578886589997401103443551023445520011101--0000121235661799960588615871898989
Q ss_pred CCCC
Q ss_conf 8999
Q 000378 232 SIER 235 (1605)
Q Consensus 232 s~~~ 235 (1605)
.+.+
T Consensus 245 ~~~~ 248 (344)
T 4gqb_B 245 KSTS 248 (344)
T ss_dssp CC--
T ss_pred CCCC
T ss_conf 9995
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=222.57 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=162.2
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCC------
Q ss_conf 98145747896456664391599983667862520-15895502432158999658997359808743068884------
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ------ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q------ 95 (1605)
++.+++|+|||++||++.+..|.+||..++..+.+ .+|...|..++||| ||..||++..|++|++||+.+.+
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred CEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCEEEEE
T ss_conf 23697667999979967999799945787242737658998659999999-99689999489978994898984156676
Q ss_pred --------EEEEECCCCCCCCC-CCCC--EEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf --------28973798552111-2586--167124787531781223344201876430589985334445788227643
Q 000378 96 --------SFVLHSPEKKMESI-SVDT--EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 96 --------~~v~~sp~~~~~~~-s~d~--~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~ 164 (1605)
.+++|+||++.++. +.|. .. +.|+|. ++..+++++||.. +|.+++|
T Consensus 99 ~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~-------~v~~wd------~~~~~~~l~gh~~----------~v~~v~f 155 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKRIAAVGEGRERFG-------HVFLFD------TGTSNGNLTGQAR----------AMNSVDF 155 (611)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSE-------EEEETT------TCCBCBCCCCCSS----------CEEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCCEE-------EEEEEE------CCCCCCEECCCCC----------CCEEEEE
T ss_conf 2255784489998999997999989977366-------999963------8997632547889----------8369998
Q ss_pred ECCCC-EEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 16987-699981486289873134319998852242222330247652783089986589909963258999
Q 000378 165 HPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 165 ~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
+|+++ .|++++.|++||+|++.++....+|.+ |...+.+++|+|++++|++|+.||++++|++.+.+
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCEEEEEEECCCEEEEEECCCCEEEEEECC----CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 899982999992898099997999757665200----25716999997999989999899919998899982
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=221.92 Aligned_cols=204 Identities=16% Similarity=0.110 Sum_probs=173.0
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEE--EE-CCCCCCEEEEEECCCCCCEE
Q ss_conf 333122112213-589999999814574789645666-43915999836678625--20-15895502432158999658
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRI--AS-IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~--~~-l~~~~~v~~lA~SP~~g~~l 77 (1605)
|...+...++.+ ||.. .|.+++|||+|.+||+ +.|..|++||..++... .. ..|..+|.+++||| ||..|
T Consensus 44 ~~~~~~~~~~~~~~h~~----~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l 118 (611)
T 1nr0_A 44 VPVGSLTDTEIYTEHSH----QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRI 118 (611)
T ss_dssp EETTCSSCCEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEE
T ss_pred ECCCCCCCCEEECCCCC----CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCCEE
T ss_conf 45787242737658998----65999999999689999489978994898984156676225578448999899-99979
Q ss_pred EEEECC----CCEEEECCCCC----------CEEEEECCCCCC-CC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE
Q ss_conf 997359----80874306888----------428973798552-11-125861671247875317812233442018764
Q 000378 78 VAILED----CTIRSCDFDTE----------QSFVLHSPEKKM-ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1605)
Q Consensus 78 aa~~~D----~tI~~wd~~~~----------q~~v~~sp~~~~-~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt 141 (1605)
+++..| ++|++||.... -.++.|+|++.. ++ +|.|++| ++ |. ..+.+.+.+
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v-------~l--wd----~~~~~~~~~ 185 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV-------AI--FE----GPPFKFKST 185 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE-------EE--EE----TTTBEEEEE
T ss_pred EEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEE-------EE--EE----CCCCEEEEE
T ss_conf 999899773669999638997632547889836999889998299999289809-------99--97----999757665
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEEC---CCCCCCCCEEEEECCCCEEEE
Q ss_conf 30589985334445788227643169876999814862898731343199988522---422223302476527830899
Q 000378 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLD---NTIKLLGAGAFAFHPTLEWLF 218 (1605)
Q Consensus 142 ~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~---~~~~~~g~~a~Af~P~g~~l~ 218 (1605)
+.||.. +|.+++|+|++..|++++.|++||+||+.++....++..+ ..-|...+.+++|+|++++|+
T Consensus 186 l~~H~~----------~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 186 FGEHTK----------FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp ECCCSS----------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred ECCCCC----------CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEE
T ss_conf 200257----------1699999799998999989991999889998286651366432356678789999979999999
Q ss_pred EECCCCEEEEEECCCC
Q ss_conf 8658990996325899
Q 000378 219 VGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 219 ~G~~dgtl~~W~vs~~ 234 (1605)
+|+.|+++++|++.+.
T Consensus 256 s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 256 SASADKTIKIWNVATL 271 (611)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEECCCEEEEEECCCC
T ss_conf 9908980999968887
No 8
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=1.00 E-value=1 Score=220.92 Aligned_cols=198 Identities=11% Similarity=0.041 Sum_probs=161.0
Q ss_pred CCCEEEECCCCCEEEE---ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCC-CCE--
Q ss_conf 9814574789645666---4391599983667862520158955024321589996589973598087430688-842--
Q 000378 23 QPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~-- 96 (1605)
.+.+++|||||++||+ +.|..|++||+.++..+..+.+...|..++||| ||..++++..|.. +.|+..+ +..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~~-~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSSL-EVISTVTGSCIAR 212 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSCE-EEEETTTCCEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECC-CCCEEEECCCEEE-EEEEECCCCCEEE
T ss_conf 7899999289998999998999989996899983989957999568889714-8854784032058-9999526850112
Q ss_pred -----------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf -----------897379855211-12586167124787531781223344201876430589985334445788227643
Q 000378 97 -----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 97 -----------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~ 164 (1605)
+++|+|+++.+. +|.|+.. ....|+|.............++.+|.. +|.+++|
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~----------~V~~~~~ 277 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVTNRFK----------GITSMDV 277 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEESSCS----------CEEEEEE
T ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCC-----EEEEEECCCCCCEECCEEEEEECCCCC----------CEEEEEE
T ss_conf 4417889988999994899978999658863-----069961344421000012244238888----------7676798
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCEEEEE-EEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf 16987699981486289873134319998-852242222330247652783089986589909963258999804630
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYT-LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~v~~t-L~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
+||+.+|++|+.|++||+||+.++.+..+ +.+ |...+.+++|+|||++|++|+.|+||++|+++++..+..-+
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~ 351 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQA----HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSM 351 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC----
T ss_pred CCCCCCEEEECCCCEEEEEECCCCCEEEEECCC----CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf 898773599848998999999999497886374----45987999998999999999289949999958987676271
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=217.84 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCC
Q ss_conf 158955024321589996589973598087430688842------------897379855211-1258616712478753
Q 000378 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQP 124 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l 124 (1605)
.+|..+|.+++|+| ++..+++++.|++|+.||+.+.+. ++.|+|+++.++ +|.|++| ++
T Consensus 105 ~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i-------~i 176 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI-------KL 176 (410)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC-------CE
T ss_pred CCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE-------EE
T ss_conf 16677689999969-99989999389859999899993778881667868789985999999999189819-------99
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 17812233442018764305899853344457882276431698769998148628987313431999885224222233
Q 000378 125 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 125 ~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
|+ ..+...+.++.||.. +|.+++|+|++..|++|+.|+.||+|++.++....++.+ |...
T Consensus 177 --wd----~~~~~~~~~~~~h~~----------~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----h~~~ 236 (410)
T 1vyh_C 177 --WD----FQGFECIRTMHGHDH----------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----HREW 236 (410)
T ss_dssp --EE----TTSSCEEECCCCCSS----------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSC
T ss_pred --EE----CCCCCEEEEECCCCC----------CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCC
T ss_conf --95----899826699828999----------778999967999999996899699998999948999927----8862
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 02476527830899865899099632589
Q 000378 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+.+++|+|++.++++|+.||++++|++.+
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 89999989999999991899099998989
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=217.16 Aligned_cols=187 Identities=17% Similarity=0.147 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCEEEECCC----CCEEEE-ECCCEEEEEECCCCCEEE---ECCCCCCEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 589999999814574789----645666-439159998366786252---015895502432158999658997359808
Q 000378 15 GRGDHKPLQPHEAAFHPN----QALIAV-AIGTYIIEFDTLTGSRIA---SIDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~----gallA~-a~g~~I~l~d~~tG~~~~---~l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
+|.+ .|.+++|+|+ +.+|++ +.|..|++||..++.... ..+|...|.+++|+| ++..+++++.|++|
T Consensus 30 ~H~~----~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDD----AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHI 104 (321)
T ss_dssp SSSS----CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEE
T ss_pred CCCC----CEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECC-CCCEEEEEECCCCE
T ss_conf 6889----679999824888888889998499989998898997436660056778889999889-99989999379809
Q ss_pred EEECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 7430688842------------897379855211-125861671247875317812233442018764305899853344
Q 000378 87 RSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 87 ~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
++||+.+.+. +++|+|+++.++ ++.|++| +. |. ..+...+-+++++..
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v-------~i--~~----~~~~~~~~~~~~~~~------ 165 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV-------NI--FG----VESGKKEYSLDTRGK------ 165 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEE-------EE--EE----TTTCSEEEEEECSSS------
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCE-------EE--EE----CCCCCEEEEECCCCC------
T ss_conf 999789997989993798567999999999989998389919-------99--98----679946677438994------
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 45788227643169876999814862898731343199988522422223302476527830899865899099632589
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 154 dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
.|.+++++|++..|++++.||.||+||+.++....++.+ |...+.+++|+|++++|++|+.||+|++|++..
T Consensus 166 ----~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 166 ----FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp ----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred ----EEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf ----299999989999999992898399999999909999802----589601899948999899990998099987899
Done!